#### 1700017D01Rik_ID3123_5 --> 0 - 1 Original Alignment ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAa ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAagtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt Alignment from CESAR ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAa ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAagtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt Alignment from Spaln_aa2Genome ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAAgtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt Alignment from Spaln_nt2Genome ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAAgtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt Alignment from Pairagon ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAAgtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt Alignment from Exonerate_protein2genome ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAAgtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt Alignment from Exonerate_coding2genome ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAAgtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt Alignment from GeneWise ATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCCATCACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCTCAGAAGAAA ttacactttaaattgacgcatttgagtgattcaaacctttgtctcttcagATGGCTGGCATGATGCTCCTACAGATTTCTGTCATGTGTGCTACTACAGAGCTGGTTATTGCAATCCTTGTCTTGCACTGGTTTATTACAACACATAAGATTGAGGAACCCTCAGAAGAAAgtgagtataaagagaacacagatattgggctagaaagtaaaattttcctt #### 1700019N19Rik_ID12796_4 --> 2 - 2 Original Alignment aaTGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGca gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagaaTGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGcagtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc Alignment from CESAR aaTGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGca gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagaaTGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGcagtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc Alignment from Spaln_aa2Genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagAATGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGCAgtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc Alignment from Spaln_nt2Genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagAATGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGCAgtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc Alignment from Pairagon AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagAATGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGCAgtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc Alignment from Exonerate_protein2genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagAATGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGCAgtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc Alignment from Exonerate_coding2genome AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagAATGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGCAgtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc Alignment from GeneWise AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA gtacttttcactctttgaaaatgtctggtcatgcctctttcctcccacagAATGCAAAAATGAGAAGAAACCACTACAGGGGCCCCCTATTCCGGGCCGGGCTGGCTACCTGCCAAGAGCTCGGGTCACTGAATTTGGCTACGACACAAGGTATACCATTATTGCCAAAAAGTGCTACAAGGACTTCCTGGACTTGGTGGAGCAAGCCAAAAGGGCTCAACTCAAGCCATATGAGCAgtgagtgtagtagctggaattacatataaactgcaggagatagcagagtc #### 1700019N19Rik_ID12797_3 --> 2 - 1 Original Alignment gcTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGg agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcaggtTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGG------GCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTggtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt Alignment from CESAR gcTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGg agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcaggtTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGG------GCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTggtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt Alignment from Spaln_aa2Genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcagGTTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGG------GCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTGgtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt Alignment from Spaln_nt2Genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcagGTTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACA---GGGACCAGCAGGGTTTAAACTG------GGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTGgtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt Alignment from Pairagon GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcagGTTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACAGGGA---CCAGCAGGGTTTAAACTG------GGCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTGgtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt Alignment from Exonerate_protein2genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcagGTTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGG------GCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTGgtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt Alignment from Exonerate_coding2genome GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcagGTTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGG------GCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTGgtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt Alignment from GeneWise GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG agacttcaacctgagtactcactttctgtttgtcactgtgtttctttcagGTTTCATACCATGGCTCAGTTACCAGGAAAGCCCTAGTGAGGACCGCACGAATCCCTGTGTGAAGTTGCTTCAGGAGAGGACACAGAGATACAGG---GACCAGCAGGGTTTAAACTGG------GCTAACACACCACCCCTGAAGCCAATCTGTTCTGAAGACACGGTCCTGTGGGTGTTGCATGAGTATGCCACAAAGTACCACCCCCTTACTCTTGgtagcagctttgacaaaccctcacatcatgcatgtgatatgtcaactgtt #### 1700019N19Rik_ID12799_2 --> 0 - 1 Original Alignment AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCg gtttagaacacttcctaactttgtgcctcagttttctcccatctcaacagAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTggtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa Alignment from CESAR AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCg gtttagaacacttcctaactttgtgcctcagttttctcccatctcaacagAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTggtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa Alignment from Spaln_aa2Genome AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtttagaacacttcctaactttgtgcctcagttttctcccatctcaacagAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTGgtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa Alignment from Spaln_nt2Genome AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtttagaacacttcctaactttgtgcctcagttttctcccatctcaacagAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTGgtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa Alignment from Pairagon AGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtttagaacacttcctaactttgtgcctcagttttctcccatctcaacagAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTGgtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa Alignment from Exonerate_protein2genome CTCAAGCCAGCGGAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtttagaacacttcctaactttgtgcctcagttttCTCCCATCTCAACAGAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTGgtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa Alignment from Exonerate_coding2genome CTCAAGCCAGCGGAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtttagaacacttcctaactttgtgcctcagttttCTCCCATCTCAACAGAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTGgtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa Alignment from GeneWise CTCAAGCCAGCGGAGAGTAAAATGGAGTCTCCCAAGACCTTCATGAGAAAGCTGCCCATCACTCCAGGATACTGCG gtttagaacacttcctaactttgtgcctcagttttCTCCCATCTCAACAGAGTAAAATGGAGTCTCCCAAGACCTTTATGAGAAAGCTGCCGATCACTCCAGGGTACTGTGgtgagtagtagttatcacaaggctcctgtcctggatcagtacatgtctaa #### 1700025F22Rik_ID3133_3 --> 0 - 0 Original Alignment CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac Alignment from CESAR CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac Alignment from Spaln_aa2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac Alignment from Spaln_nt2Genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac Alignment from Pairagon CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac Alignment from Exonerate_protein2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac Alignment from Exonerate_coding2genome CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac Alignment from GeneWise CTGATCTGGACCATGACAATGAATATCCTAAGCATCTTCGCAACACTAGTTGGTTTGTTTTTAACAACAGTCGAAATGATAGTGACTTCAAGTGTATATTCTACCCTGTGGCAATAT ccagtatggaataaattcaagtactagatttacattctttgtttttccagCTCATCTGGACGATGACCATGAATACCCTCAGCATCTTTGCAACACTCCTTGGTTTGTTTCTGACAACAGTTGAAATGATAGTGACTTCCAGTGTATATTCCACTCTGTGGCAATATgtgagtatggcatttctgaaagatgttcctcataaatacataattgtgac #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAggtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAggtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGgtgagtagggccctgttgagaaccatcaatagagtgatataatataatat Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG aagaggcttgcctcctgagttgtctccattctgctcccttctctggccagAGCTGCTTTGCTGTGATGCTGGGAGGCCCTGAGGAGACAGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACAGGTGAgtagggccctgttgagaaccatcaatagagtgatataatataatat #### 1700055N04Rik_ID230_8 --> 2 - 0 Original Alignment ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagttCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag Alignment from CESAR ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagttCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag Alignment from Spaln_aa2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag Alignment from Spaln_nt2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag Alignment from Pairagon CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag Alignment from Exonerate_protein2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag Alignment from Exonerate_coding2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag Alignment from GeneWise CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCTAGCGCTTTATGCCTATTCCAACAACGCAGAG catgcgacgaaaggggcgggacatatgatttttcatatacattctttcagTTCCCACAGTGTTAGTGGATGTACAGGAGGCAGAGCCCGTGATCCAGGAGGAGATCTTTGGACCCCTCCTCCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCGATTGAGTTCATGAACCAGCGGGAAAAGCCACTAGCACTATATGTCTATTCAAACAATGCAGAGgtaatgagtgttgtcaacagtaggctatagcaacaggaggcactaagcag #### 1700123I01Rik_ID1495_7 --> 1 - 0 Original Alignment gGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcaggGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta Alignment from CESAR gGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcaggGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta Alignment from Spaln_aa2Genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta Alignment from Spaln_nt2Genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta Alignment from Pairagon GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta Alignment from Exonerate_protein2genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta Alignment from Exonerate_coding2genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta Alignment from GeneWise GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG tgacactgccacagcagtgccattcttcaatgtgccacctatgtcctcagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaaggatcaatactgggagctttggcattgtggggccccttctctgcta #### 2410127L17Rik_ID4446_2 --> 1 - 0 Original Alignment cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttccccacagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt Alignment from CESAR cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttccccacagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt Alignment from Spaln_aa2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt Alignment from Spaln_nt2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt Alignment from Pairagon CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt Alignment from Exonerate_protein2genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt Alignment from Exonerate_coding2genome TACGGCACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttcccCACAGTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt Alignment from GeneWise CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgctaaactcaacaaagactcatcttccccacagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaggcgacattgtttctattgatattcccagcacactttaattagggtt #### 2410127L17Rik_ID4451_6 --> 2 - 1 Original Alignment atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag Alignment from CESAR atGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTg ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagatGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTggtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag Alignment from Spaln_aa2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag Alignment from Spaln_nt2Genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag Alignment from Pairagon ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag Alignment from Exonerate_protein2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag Alignment from Exonerate_coding2genome ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag Alignment from GeneWise ATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTG ataaaaatactaacacaaagtgatagatatctgttttgttttgttttcagATGCCTGGGACTGTATTGCCACCTGCTTCTTCATAGACACAGCTCACAATGTAATTGAGTACATTGATACAATATGGAGAATACTCAAGCCAGGTGGAATCTGGATAAATCTTGgtgggtgcttgtacttaactaagggtttgtatataactctgagtgctgag #### 4430402I18Rik_ID6180_10 --> 1 - 0 Original Alignment gTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagaTTCCAGCCTTTTTCTCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg Alignment from CESAR gTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagaTTCCAGCCTTTTTCTCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg Alignment from Spaln_aa2Genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagATTCCAGCCTTTTTCTCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg Alignment from Spaln_nt2Genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagATTCCAGCCTTTTTCTCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg Alignment from Pairagon GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagATTCCAGCCTTTTTCTCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg Alignment from Exonerate_protein2genome GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagATTCCAGCCTTTTTCTCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg Alignment from Exonerate_coding2genome ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagattccagcctttttctcagtccacatggcagaagatccctgaaggagtacggagccttctggcatcacatcgagcttacccaaaagtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg Alignment from GeneWise GTTCCAGCCTTTTTCTCAGTCCACGTGGCAGAAGATCCCCGAGGGTGTACGAAGCCTTCTGACATCCCACCGAGCTCACCCAAAG ccatccttttgtttaattagataacacttttgttatctcatgtcctgtagATTCCAGCCTTTTTCTCAGTCCACATGGCAGAAGATCCCTGAAGGAGTACGGAGCCTTCTGGCATCACATCGAGCTTACCCAAAAgtaagctgttctggtgcaattagattctggctaataaatgtgaaaagtgg #### 4430402I18Rik_ID6186_4 --> 2 - 0 Original Alignment caTGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagcaTGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag Alignment from CESAR caTGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagcaTGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag Alignment from Spaln_aa2Genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagCATGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag Alignment from Spaln_nt2Genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagCATGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag Alignment from Pairagon CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagCATGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag Alignment from Exonerate_protein2genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagCATGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag Alignment from Exonerate_coding2genome CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagCATGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag Alignment from GeneWise CATGGGAAGAGTTGGCCTACTATGAAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCGTCCTCACACCTTGGCATGCAGAGGGAGGTGCTCATGAAGACAGCTATTTGGTTTCCA gacaccccaatatagacagcatctggccccccttttttctccacacacagCATGGGAGGAGTTGGCATATTATGCAAAAAACACCCGAGATTTCCTGTTCCCTGAGCCCAGGCTGGCATCCTCACACCTTGGCATGCAGAGAGAGGTTCTCATGAAGATGGCTATCTGGTTTCCAgtgacgcacctccccattagagcctctacagaaacaaaagtcttcaaaag #### 4430402I18Rik_ID6187_3 --> 2 - 1 Original Alignment gcTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAg ctcctgactattagacctaaacattaacttaactattgtctcttatccaggcTTCCTAACCAGGTTTGAATTAGTACAACTAGTGTCTCCAggtgagttgccaacaaacatagtattgaattaacaggtttgtctgggaggg Alignment from CESAR gcTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAg ctcctgactattagacctaaacattaacttaactattgtctcttatccaggcTTCCTAACCAGGTTTGAATTAGTACAACTAGTGTCTCCAggtgagttgccaacaaacatagtattgaattaacaggtttgtctgggaggg Alignment from Spaln_aa2Genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG ctcctgactattagacctaaacattaacttaactattgtctcttatccagGCTTCCTAACCAGGTTTGAATTAGTACAACTAGTGTCTCCAGgtgagttgccaacaaacatagtattgaattaacaggtttgtctgggaggg Alignment from Spaln_nt2Genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG ctcctgactattagacctaaacattaacttaactattgtctcttatccagGCTTCCTAACCAGGTTTGAATTAGTACAACTAGTGTCTCCAGgtgagttgccaacaaacatagtattgaattaacaggtttgtctgggaggg Alignment from Pairagon GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG ctcctgactattagacctaaacattaacttaactattgtctcttatccagGCTTCCTAACCAGGTTTGAATTAGTACAACTAGTGTCTCCAGgtgagttgccaacaaacatagtattgaattaacaggtttgtctgggaggg Alignment from Exonerate_protein2genome GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG ctcctgactattagacctaaacattaacttaactattgtctcttatccagGCTTCCTAACCAGGTTTGAATTAGTACAACTAGTGTCTCCAGgtgagttgccaacaaacatagtattgaattaacaggtttgtctgggaggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTTCCTAACCAGGTTTGAATTAGTACAGCTAGTGTCTCCAG ctcctgactattagacctaaacattaacttaactattgtctcttatccagGCTTCCTAACCAGGTTTGAATTAGTACAACTAGTGTCTCCAGgtgagttgccaacaaacatagtattgaattaacaggtttgtctgggaggg #### 4930506M07Rik_ID12856_15 --> 0 - 1 Original Alignment GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTa aggtgtaatgggtcagaaataccattagttccctatgctctgtgtctcagGGGACGCTTAACAAATCTACCAGTTCAAGAAGCTTAAAATCTCTTGGCCCTGAGAACAGTGAGACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGACAGCAGTagtgagagtctcttgaagccctctcatttctctatctgcttcatcatatat Alignment from CESAR GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTa aggtgtaatgggtcagaaataccattagttccctatgctctgtgtctcagGGGACGCTTAACAAATCTACCAGTTCAAGAAGCTTAAAATCTCTTGGCCCTGAGAACAGTGAGACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGACAGCAGTagtgagagtctcttgaagccctctcatttctctatctgcttcatcatatat Alignment from Spaln_aa2Genome GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA aggtgtaatgggtcagaaataccattagttccctatgctctgtgtctcagGGGACGCTTAACAAATCTACCAGTTCAAGAAGCTTAAAATCTCTTGGCCCTGAGAACAGTGAGACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGACAGCAGTAgtgagagtctcttgaagccctctcatttctctatctgcttcatcatatat Alignment from Spaln_nt2Genome GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA aggtgtaatgggtcagaaataccattagttccctatgctctgtgtctcagGGGACGCTTAACAAATCTACCAGTTCAAGAAGCTTAAAATCTCTTGGCCCTGAGAACAGTGAGACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGACAGCAGTAgtgagagtctcttgaagccctctcatttctctatctgcttcatcatatat Alignment from Pairagon GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA aggtgtaatgggtcagaaataccattagttccctatgctctgtgtctcagGGGACGCTTAACAAATCTACCAGTTCAAGAAGCTTAAAATCTCTTGGCCCTGAGAACAGTGAGACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGACAGCAGTAgtgagagtctcttgaagccctctcatttctctatctgcttcatcatatat Alignment from Exonerate_protein2genome GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA aggtgtaatgggtcagaaataccattagttccctatgctctgtgtctcagGGGACGCTTAACAAATCTACCAGTTCAAGAAGCTTAAAATCTCTTGGCCCTGAGAACAGTGAGACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGACAGCAGTAgtgagagtctcttgaagccctctcatttctctatctgcttcatcatatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGACACTTAACAAATCCACTAGTTCGAGAAGCTTAAAATCCCTTGGCCCTGAGAACAGTGAAACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGATAGCAGTA aggtgtaatgggtcagaaataccattagttccctatgctctgtgtctcagGGGACGCTTAACAAATCTACCAGTTCAAGAAGCTTAAAATCTCTTGGCCCTGAGAACAGTGAGACTGAGTTAGAGAGGATTTTACGTCGCAGAAAGCTGACGGCAGAAGCAGACAGCAGTAgtgagagtctcttgaagccctctcatttctctatctgcttcatcatatat #### 4930506M07Rik_ID12866_9 --> 0 - 0 Original Alignment ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgtatgcttgaggttggtacatacatcctgacccactccttccgcagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGCCACCTTCTGCTGCAGAGCTCTCTACCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCGAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagtgtccatattctgtatccattaacatgtagaaacatatacagcca Alignment from CESAR ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgtatgcttgaggttggtacatacatcctgacccactccttccgcagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGCCACCTTCTGCTGCAGAGCTCTCTACCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCGAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagtgtccatattctgtatccattaacatgtagaaacatatacagcca Alignment from Spaln_aa2Genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgtatgcttgaggttggtacatacatcctgacccactccttccgcagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGCCACCTTCTGCTGCAGAGCTCTCTACCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCGAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagtgtccatattctgtatccattaacatgtagaaacatatacagcca Alignment from Spaln_nt2Genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgtatgcttgaggttggtacatacatcctgacccactccttccgcagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGCCACCTTCTGCTGCAGAGCTCTCTACCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCGAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagtgtccatattctgtatccattaacatgtagaaacatatacagcca Alignment from Pairagon ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgtatgcttgaggttggtacatacatcctgacccactccttccgcagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGCCACCTTCTGCTGCAGAGCTCTCTACCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCGAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagtgtccatattctgtatccattaacatgtagaaacatatacagcca Alignment from Exonerate_protein2genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgtatgcttgaggttggtacatacatcctgacccactccttccgcagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGCCACCTTCTGCTGCAGAGCTCTCTACCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCGAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagtgtccatattctgtatccattaacatgtagaaacatatacagcca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgtatgcttgaggttggtacatacatcctgacccactccttccgcagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGCCACCTTCTGCTGCAGAGCTCTCTACCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCGAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagtgtccatattctgtatccattaacatgtagaaacatatacagcca #### 4930506M07Rik_ID12870_7 --> 0 - 1 Original Alignment GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAg gcatggcccccctccctctcagggaaccactctattgttataccaaacagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAggtgagttaagtatctgcagcctcgctgcttttcgcagaattttggctacc Alignment from CESAR GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAg gcatggcccccctccctctcagggaaccactctattgttataccaaacagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAggtgagttaagtatctgcagcctcgctgcttttcgcagaattttggctacc Alignment from Spaln_aa2Genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccctccctctcagggaaccactctattgttataccaaacagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagttaagtatctgcagcctcgctgcttttcgcagaattttggctacc Alignment from Spaln_nt2Genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccctccctctcagggaaccactctattgttataccaaacagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagttaagtatctgcagcctcgctgcttttcgcagaattttggctacc Alignment from Pairagon GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccctccctctcagggaaccactctattgttataccaaacagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagttaagtatctgcagcctcgctgcttttcgcagaattttggctacc Alignment from Exonerate_protein2genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccctccctctcagggaaccactctattgttataccaaacagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagttaagtatctgcagcctcgctgcttttcgcagaattttggctacc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccctccctctcagggaaccactctattgttataccaaacagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtgagttaagtatctgcagcctcgctgcttttcgcagaattttggctacc #### 4930506M07Rik_ID12871_6 --> 2 - 0 Original Alignment aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG aaaagtggaaaatgatgaccaatatttagaattgcctcttttctttctagaaCTTCAGGATCAAATTGTTGCTGTACAGGAAGAAAAGAAGGTACTAGCCAATGAGCTGGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtacgtatcctagaggtctgttgctccagtctacctatgtaatccagaag Alignment from CESAR aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG aaaagtggaaaatgatgaccaatatttagaattgcctcttttctttctagaaCTTCAGGATCAAATTGTTGCTGTACAGGAAGAAAAGAAGGTACTAGCCAATGAGCTGGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtacgtatcctagaggtctgttgctccagtctacctatgtaatccagaag Alignment from Spaln_aa2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG aaaagtggaaaatgatgaccaatatttagaattgcctcttttctttctagAACTTCAGGATCAAATTGTTGCTGTACAGGAAGAAAAGAAGGTACTAGCCAATGAGCTGGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtacgtatcctagaggtctgttgctccagtctacctatgtaatccagaag Alignment from Spaln_nt2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG aaaagtggaaaatgatgaccaatatttagaattgcctcttttctttctagAACTTCAGGATCAAATTGTTGCTGTACAGGAAGAAAAGAAGGTACTAGCCAATGAGCTGGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtacgtatcctagaggtctgttgctccagtctacctatgtaatccagaag Alignment from Pairagon AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG aaaagtggaaaatgatgaccaatatttagaattgcctcttttctttctagAACTTCAGGATCAAATTGTTGCTGTACAGGAAGAAAAGAAGGTACTAGCCAATGAGCTGGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtacgtatcctagaggtctgttgctccagtctacctatgtaatccagaag Alignment from Exonerate_protein2genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG aaaagtggaaaatgatgaccaatatttagaattgcctcttttctttctagAACTTCAGGATCAAATTGTTGCTGTACAGGAAGAAAAGAAGGTACTAGCCAATGAGCTGGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtacgtatcctagaggtctgttgctccagtctacctatgtaatccagaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG aaaagtggaaaatgatgaccaatatttagaattgcctcttttctttctagAACTTCAGGATCAAATTGTTGCTGTACAGGAAGAAAAGAAGGTACTAGCCAATGAGCTGGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtacgtatcctagaggtctgttgctccagtctacctatgtaatccagaag #### 9130011E15Rik_ID9620_24 --> 0 - 0 Original Alignment GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat Alignment from CESAR GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat Alignment from Spaln_aa2Genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat Alignment from Spaln_nt2Genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat Alignment from Pairagon GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat Alignment from Exonerate_protein2genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat Alignment from Exonerate_coding2genome GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat Alignment from GeneWise GTACTAGAAGTAGTGCGAGCCAACTACGACACACTCACACTGAAGCTGCAAGATGGCCTGGACCAATATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAAAGAGCTG agagttggtcttcaggtcaaaagcttggaaagatgttctttcctgtcaagGTGCTAGAAGTAGTGCGTGCCAACTATGATACCCTCACATTGAAGCTGCAGGATGGCCTTGACCATTATGAGCGCTACTCTGAGCAACACAAGGAGGCTGCCTTCTTCAGAGAGCTGgtaaagactgcagttctctctctgtagttctactaatctttagcacacat #### 9130011E15Rik_ID9656_15 --> 2 - 0 Original Alignment atGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagatGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct Alignment from CESAR atGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagatGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct Alignment from Spaln_aa2Genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct Alignment from Spaln_nt2Genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct Alignment from Pairagon ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct Alignment from Exonerate_protein2genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct Alignment from Exonerate_coding2genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct Alignment from GeneWise ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttgaatgctaaagaatttattttttatttcatttcaaaagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtatggctggttgtgaggcttgtgtgagtgggcagcgcttagagcagtct #### 9130011E15Rik_ID9666_11 --> 0 - 2 Original Alignment GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTAcagtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg Alignment from CESAR GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTAcagtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg Alignment from Spaln_aa2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg Alignment from Spaln_nt2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg Alignment from Pairagon GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg Alignment from Exonerate_protein2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg Alignment from Exonerate_coding2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg Alignment from GeneWise GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggataatccctgtgttgttgttgtttctgaacagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagtccatgggtgtcatttgtgtggtcttcagcttaatgtggaagtgg #### A1cf_ID6642_4 --> 1 - 1 Original Alignment gACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAg ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagcACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTC---AAAGGAGTAGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAggtgagtcatttcctcatgtggatttctcccacaattgttacagttccatc Alignment from CESAR gACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAg ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagcACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTC---AAAGGAGTAGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAggtgagtcatttcctcatgtggatttctcccacaattgttacagttccatc Alignment from Spaln_aa2Genome GACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAG ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagCACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTC---AAAGGAGTAGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAGgtgagtcatttcctcatgtggatttctcccacaattgttacagttccatc Alignment from Spaln_nt2Genome GACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAG ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagCACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTCAAAGGAGT---AGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAGgtgagtcatttcctcatgtggatttctcccacaattgttacagttccatc Alignment from Pairagon GACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAG ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagCACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTCA---AAGGAGTAGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAGgtgagtcatttcctcatgtggatttctcccacaattgttacagttccatc Alignment from Exonerate_protein2genome GACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAG ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagCACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTC---AAAGGAGTAGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAGgtgagtcatttcctcatgtggatttctcccacaattgttacagttccatc Alignment from Exonerate_coding2genome GACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAG ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagCACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTC---AAAGGAGTAGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAGgtgagtcatttcctcatgtggatttctcccacaattgttacagttccatc Alignment from GeneWise GACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTGTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAGGAAG ctacacaaatccacatttatgaagtgctcttacctctgctcttcctgcagCACTGGCCGTCTCCTGGGAGTTTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATTTTACCAGAGATGAAAAAAGTC---AAAGGAGTAGTAGATGTTATTGTCTACCCAAGTGCTGCTGATAAGACTAAAAACCGGGGGTTTGCATTTGTAGAATTTGAGAGTCACCGAGCTGCTGCCATGGCTAGGCGAAGGTTGCTGCCAGGTGAgtcatttcctcatgtggatttctcccacaattgttacagttccatc #### A1cf_ID6647_8 --> 2 - 0 Original Alignment aaATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagaaATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGATAC---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac Alignment from CESAR aaATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagaaATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGATAC---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac Alignment from Spaln_aa2Genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagAAATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGATAC---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac Alignment from Spaln_nt2Genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagAAATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGAT---ACGTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac Alignment from Pairagon AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagAAATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGAT---ACGTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac Alignment from Exonerate_protein2genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagAAATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGATAC---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac Alignment from Exonerate_coding2genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagAAATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGATAC---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac Alignment from GeneWise AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaacggttggtctcagtaaaatgccttctctccctattctatccaaatagAAATTTACATGAATGTTCCTATAGGGGCAGCGGGGGTGAGAGGACTAGGTGGGCGTGGTTATCTGGCATACACAGGCCTGGGCCGAGGATAC---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTGCCCGGGATGGAGCTCACTGCGATGAATACTGTTTCTTTGTTACCACAAGGAATTAAGCTTGCACCTCAGgtaaagtagatgattccagggattgttaaatcgggcccaggaccaagaac #### A630007B06Rik_ID12186_11 --> 0 - 1 Original Alignment GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAggtgggactttgtcgtctgtctttctgagagctctggttagctaggttata Alignment from CESAR GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAggtgggactttgtcgtctgtctttctgagagctctggttagctaggttata Alignment from Spaln_aa2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggactttgtcgtctgtctttctgagagctctggttagctaggttata Alignment from Spaln_nt2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggactttgtcgtctgtctttctgagagctctggttagctaggttata Alignment from Pairagon GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggactttgtcgtctgtctttctgagagctctggttagctaggttata Alignment from Exonerate_protein2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggactttgtcgtctgtctttctgagagctctggttagctaggttata Alignment from Exonerate_coding2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggactttgtcgtctgtctttctgagagctctggttagctaggttata Alignment from GeneWise GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaacggtgatccaaggttaacctgccaacagttgactttcctcatttcagGAGAGCAAGTTGCCCAAAGAGGAAGAGCTTCAAAAGGAGGAAGTTCAGACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTGACACAAAGGCACAAACATGCCTCTAATGTTAAGGACCTCAGCAAGCAGCTTCAGCAAGgtgggactttgtcgtctgtctttctgagagctctggttagctaggttata #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aagagtttgtttgatggccaagtccaagcagtggcttgtgtgctcagtagGAATCAGAAGAAATCAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaagtttaattcacccacactccctaatacattcattctgatggggctg #### A630007B06Rik_ID12193_4 --> 0 - 0 Original Alignment GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg Alignment from CESAR GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg Alignment from Spaln_aa2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg Alignment from Spaln_nt2Genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg Alignment from Pairagon GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg Alignment from Exonerate_protein2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg Alignment from Exonerate_coding2genome GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg Alignment from GeneWise GCCAATAAGAAATGTGAAGAGGCCCGTCAGGAAAAGGAGGCAATGGTAATGAAGTATGTGAGAGGCGAGAAGGAGGCTCTAGACCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGATGCAAGTAAGGAATTGGAGAAAAACACTAACAAAATTAAGCAGCTGTCTCAGGAGAAAGGGCGGCTGCAGCAACTCTATGAATCGAAG ttccagttgcaagtgcagtgagccttggttccctgtctgtgtcctcccagGCAAATAAAAAATGTGAAGAGGCCCGTCAGGAGAAGGAGGCAATGGTAATGAAGTATGTGAGAGGTGAGAAGGAGGCTCTAGATCTGCGAAAGGAAAAAGAAACCCTTGAGAGGAAACTTAGAGGTGCAAGTAAGGAGCTAGAGAAAAACGCTAACAAGATTAAACAGCTGTCTCAGGATAAAGGGCGGCTGCAGCAACTCTATGAATCGCAAgtatgcctagcatgtgtcttttttgcttagtccacagttttggaacattg #### Abcc2_ID8820_4 --> 0 - 0 Original Alignment CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact Alignment from CESAR CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact Alignment from Spaln_aa2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact Alignment from Spaln_nt2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact Alignment from Pairagon CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact Alignment from Exonerate_protein2genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact Alignment from Exonerate_coding2genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact Alignment from GeneWise CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggccgggggagggctgaaaaagcagtcctgtccctccttcccctccagCTTCTGGTACTGGTGATTCAACATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCCATGTTCTGGATACACTCTCTATTATGTGGTATATTTCAATTCCAGACGCTAATACGAGCACTAGTGCAGgtaagtaggaagggaggactgcttacctacaaagatgctggtgctggact #### Abcc2_ID8827_11 --> 0 - 0 Original Alignment GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt Alignment from CESAR GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt Alignment from Spaln_aa2Genome GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt Alignment from Spaln_nt2Genome GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt Alignment from Pairagon GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt Alignment from Exonerate_protein2genome GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt Alignment from Exonerate_coding2genome GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt Alignment from GeneWise GTCCAGAATATGAAGAATAAAGACAAACGCTTAAAAATCATGAATGAGATTCTTAGTGGGATTAAG catgcctacatccctgaatagtattgccagtactatttttatttttgcagGTCCAGAATATGAAGAATAAAGACAAACGCTTAAAGATCATGAATGAGATTCTTAGTGGGATTAAGgtaagggagattctgctggctgcagggcgaatgtcacatagctcttgatt #### Abcc2_ID8828_12 --> 0 - 0 Original Alignment ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAAC---TTATACCTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca Alignment from CESAR ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAACTTA---TACCTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca Alignment from Spaln_aa2Genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAACTTATAC---CTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca Alignment from Spaln_nt2Genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAACT---TATACCTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca Alignment from Pairagon ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAACT---TATACCTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca Alignment from Exonerate_protein2genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAACTTATAC---CTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca Alignment from Exonerate_coding2genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAACTTATAC---CTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca Alignment from GeneWise ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG ggtattttctcatggggcaatgtgtttctgtctttgatgtttgttaacagATCCTAAAACACTTTGCCTGGGAGCCCTCTTTTAAAGAGCAGGTTAACAGCATTCGGAAAAAAGAGCTAAGGAACTTATAC---CTCAGCCAACTGCAGTCAATTTTAATTTTCATTTTACACCTAACACCAACTTTGgtaagtaaggatatgaggagtatggaccaatgtccaaactggaaagggca #### Abcc2_ID8833_17 --> 0 - 0 Original Alignment GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCT---CTCCTGGATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg Alignment from CESAR GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCTCTCCTG---GATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg Alignment from Spaln_aa2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCTCTCCTG---GATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg Alignment from Spaln_nt2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCTCTCCT---GGATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg Alignment from Pairagon GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCTCTCCT---GGATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg Alignment from Exonerate_protein2genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCTCTCCTG---GATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg Alignment from Exonerate_coding2genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCTCTCCTG---GATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg Alignment from GeneWise GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtgactatcgcgcatttcttcacgttcgtcttagGGCTCTATAGCCTATGTCCCAAGGCAGGCCTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATGCATGTGCTCTCCTG---GATTTGGAGATGTTGCCCAGTGGAGACATGGCTGAGATCGGGGAGAAGgtgagttgggtggtggaaccttgaaggaaagcagtatgttagttggattg #### Abcc2_ID8834_18 --> 0 - 0 Original Alignment GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta Alignment from CESAR GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta Alignment from Spaln_aa2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta Alignment from Spaln_nt2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta Alignment from Pairagon GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta Alignment from Exonerate_protein2genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta Alignment from Exonerate_coding2genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta Alignment from GeneWise GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG taaaacaggtcatgggagtgttggatcagttccaatgtgcgccctcacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGACGCAGACATCTATATTCTAGAGGACCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtgagtgtgacagatgtttgcgtgtgtgtgtgtctgtctttgtaggtgta #### Abcc2_ID8837_21 --> 1 - 0 Original Alignment cTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagcTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAAA---CAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt Alignment from CESAR cTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagcTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAAA---CAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt Alignment from Spaln_aa2Genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagCTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAAA---CAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt Alignment from Spaln_nt2Genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagCTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAA---ACAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt Alignment from Pairagon CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagCTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAA---ACAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt Alignment from Exonerate_protein2genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagCTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAAA---CAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt Alignment from Exonerate_coding2genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagCTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAAA---CAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt Alignment from GeneWise CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tagcatgtctgcatgctctaaggtgctttaatggtatattttattttcagCTCTAGGTCAGGCAGCAGGTGTGGAAAGTCTCTAAAGAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAAGAAGTAGTGAAA---CAAAAACTAATTAAGAAGGAGTTTGTGGAAACTGGTAAGgtaaggatagacagccaccactactgttgagatatgttgatctgatgtgt #### Abcc2_ID8840_24 --> 0 - 0 Original Alignment GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACT---CTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt Alignment from CESAR GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACT---CTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt Alignment from Spaln_aa2Genome GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTT---AGCACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt Alignment from Spaln_nt2Genome GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAG---CACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt Alignment from Pairagon GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACT---CTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt Alignment from Exonerate_protein2genome GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGC---ACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt Alignment from Exonerate_coding2genome GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGC---ACTCTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt Alignment from GeneWise GATATTTCTACGGTGGACGACACACTCCCCCAGACTTTGCGAAGCTGGCTGCTGTGTTTCTTCGGCATAGTTAGCACT---CTCGTGATGATCTGCATGGCCACCCCCATCTTCATCATCATCATCATCCCTCTCAGCATTCTCTATGTATCTGTGCAG cttaaaagttcactggttcattgtctcttctttgtctgtcttctttctagGATGTTTCTACAGTAGACGACACACTCCCACAGACTTTGCGAAGTTGGCTGCTGTGTTTCTTTGGCATAGTCAGCACCACACTTGTGATGATCTGCATGGCCACACCCATCTTAATCATCATTATCATTCCTCTCAGCATCCTCTGTGTATCTGTGCAGgtgagttcttcaaccccctcttcatccaaaggcttctgaaaactccctgt #### Abcc2_ID8842_26 --> 1 - 0 Original Alignment gTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcaggTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc Alignment from CESAR gTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcaggTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc Alignment from Spaln_aa2Genome GTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcagGTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc Alignment from Spaln_nt2Genome GTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcagGTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc Alignment from Pairagon GTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcagGTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc Alignment from Exonerate_protein2genome GTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcagGTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc Alignment from Exonerate_coding2genome GTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcagGTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc Alignment from GeneWise GTGGCTTGCCATTCGCCTGGAGCTGGTTGGAAACCTGATTGTCTTCTGCTCGGCCTTGCTTCTGGTTATTTATAAGAATTCCTTAACCGGGGACACTGTGGGCTTTGTTCTGTCCAACGCCCTCAAC aacagaggagggacttacatacatcttttcatttccttgtcctgtggcagGTGGCTTGCCATCCGCCTGGAACTGGTGGGAAACCTAACGGTCTTTTGCTCAGCATTGCTTCTGGTGATTTATAAGAATTCCTTGACTGGGGACACTGTTGGCTTTGTGCTGTCTAATCCACTCAAGgtgagtgtggggattggctggtgtgctaactaaatcaattccactcattc #### Abcc2_ID8843_27 --> 0 - 0 Original Alignment ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga Alignment from CESAR ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga Alignment from Spaln_aa2Genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga Alignment from Spaln_nt2Genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga Alignment from Pairagon ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga Alignment from Exonerate_protein2genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga Alignment from Exonerate_coding2genome ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga Alignment from GeneWise ATCACACAAACCCTGAACTGGCTAGTGAGGATGACGTCAGAAGTAGAGACCAACATCGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAG tgtataatgtgtatgcaaatggtgtatgctcatggctgtattttctccagATCACGCAAACCCTGAACTGGCTAGTGAGGATGACATCGGAAGTTGAGACCAACATTGTGGCTGTTGAGCGAATAAATGAATACATAAATGTGGATAATGAGgtgggcgttattgaaacccaggagcaggtcccccacactctttcaagaga #### Abcc2_ID8845_29 --> 0 - 0 Original Alignment GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTTA---ATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat Alignment from CESAR GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTTA---ATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat Alignment from Spaln_aa2Genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTTA---ATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat Alignment from Spaln_nt2Genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTT---AATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat Alignment from Pairagon GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTT---AATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat Alignment from Exonerate_protein2genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTTA---ATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat Alignment from Exonerate_coding2genome GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTTA---ATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat Alignment from GeneWise GTCGGTGTGGTGGGCAGGACCGGAGCTGGAAAATCATCCCTCACAAACTGCCTCTTCAGAATCTTAGAGTCTGCAGGTGGCCAGATCATCATTGATGGGATTGATATTGCCTCCATTGGACTGCACGACCTTCGAGGGAGACTGACCATCATTCCCCAG tcgccaccataaaccccatgttaagttggagaaatcttttctttttgtagGTTGGTGTGGTGGACAGGACTGGAGCTGGAAAATCATCACTGACAAACTGCCTGTTA---ATTTCAGAGTCTGCAGGTGGCCAGATAATCATTGATGGGATTGATACTGCCTCCATTGGACTGCATGACCTACAGGGTAGACTAACTATCATTCCCCAGgtaaggtaactagaaatcaattgggcacacacagggggaaacaatgacat #### Acsl5_ID11598_3 --> 2 - 0 Original Alignment acAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagacAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct Alignment from CESAR acAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagacAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct Alignment from Spaln_aa2Genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagACAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct Alignment from Spaln_nt2Genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagACAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct Alignment from Pairagon ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagACAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct Alignment from Exonerate_protein2genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagACAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct Alignment from Exonerate_coding2genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagACAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct Alignment from GeneWise ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcacttaacataatcaaccagtcactcacctcttcccttggggaagACAATGGGCCTTGCTTGGGGTATAGAAAGCCGAACCAGCCCTATAAATGGATCTCCTATAAACAGgtaagtccacaacctcatgctctgcctatgcaccatgtgccgtcttggct #### Acsl5_ID11599_4 --> 0 - 0 Original Alignment GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg Alignment from CESAR GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg Alignment from Spaln_aa2Genome GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg Alignment from Spaln_nt2Genome GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg Alignment from Pairagon GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg Alignment from Exonerate_protein2genome GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg Alignment from Exonerate_coding2genome GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg Alignment from GeneWise GTGTCTGATCGAGCAGAGTACCTGGGCTCCTGTCTTTTGCATAAAGGATATAAGTCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAG cttggctttgttctgctccttaccacctcctttgatttggctttccttagGTGTCTGATCGAGCTGAGTACCTCGGTTCCTGCCTTTTGGATAAGGGATATAAATCATCACAGGACCAATTTGTTGGCATCTTTGCTCAAAATAGGCCAGAGgtgaccattttgacactgattataaaaatagaaatacctaatacacctgg #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from CESAR AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Spaln_nt2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Pairagon AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Exonerate_protein2genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Exonerate_coding2genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from GeneWise AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAAGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc #### Acsl5_ID11604_9 --> 2 - 0 Original Alignment gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcaggtGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa Alignment from CESAR gtGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcaggtGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa Alignment from Spaln_aa2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcagGTGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa Alignment from Spaln_nt2Genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcagGTGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa Alignment from Pairagon GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcagGTGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa Alignment from Exonerate_protein2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcagGTGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa Alignment from Exonerate_coding2genome GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcagGTGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa Alignment from GeneWise GTGACCCCAAAGGAGCTATGCTAACCCATGAAAATGTTGTTTCAAACATGGCTGCTTTCCTCAAATTTCTGGAG accagcaagccacactgctgttctttcttcagtttctggtttgtctgcagGTGATCCTGAAGGAGCCATGTTGACCCATGAAAATGTTGTTTCCAACATGGCTGCTTTTCTAAAATTTTTGGAGgtactgagtattcgccatgatctgacttgactataggagtttcaggagaa #### Acsl5_ID11605_10 --> 0 - 0 Original Alignment CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga Alignment from CESAR CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga Alignment from Spaln_aa2Genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga Alignment from Spaln_nt2Genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga Alignment from Pairagon CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga Alignment from Exonerate_protein2genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga Alignment from Exonerate_coding2genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga Alignment from GeneWise CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaacaactggacaccaaactactgccattatttcccaccattcctgacagCCTATCTTTCAGTCCACCTCCGATGATGTGACAATATCCTACCTACCTTTAGCTCATATGTTTGAGAGGCTTGTTCAGgtaaggagcttggagcaggtagctattttacaaccctacagtaggactga #### Acsl5_ID11608_13 --> 0 - 0 Original Alignment GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGTCCAC---ATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga Alignment from CESAR GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGTCCAC---ATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga Alignment from Spaln_aa2Genome GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGTCCAC---ATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga Alignment from Spaln_nt2Genome GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGT---CCACATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga Alignment from Pairagon GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGT---CCACATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga Alignment from Exonerate_protein2genome GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGTCCAC---ATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga Alignment from Exonerate_coding2genome GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGTCCAC---ATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga Alignment from GeneWise GGAAGCCTGGGGGGGAAGGTTCGCCTCATGATCACTGGAGCCGCCCCCATCTCCACTCCAGTCTTGACATTCTTCAGGGCTGCAATGGGATGTTGG atgatgaatcggccactcagtccttttgacctgctgccctgtccctgcagGGAAGCCTGAGTGGGAAGGTCCAC---ATGATCAGTGGGGCTACCCCAATCTCTACTCCAGTGCTGACATTCTTTAGGGCTGCAATGGGGTGTTGGgtggggtctcacctctccggtgattcagcacactcttgaaatagatatga #### Acsl5_ID11611_16 --> 0 - 0 Original Alignment ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat Alignment from CESAR ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat Alignment from Spaln_aa2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat Alignment from Spaln_nt2Genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat Alignment from Pairagon ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat Alignment from Exonerate_protein2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat Alignment from Exonerate_coding2genome ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat Alignment from GeneWise ATCTGCATCAAAGGTAACAATGTGTTCAAAGGCTACCTAAAGGACCCAGAGAAAACACAGGAAGTACTGGACAAGGATGGATGGCTTCACACTGGGGACATTGGTCGCTGGCTTCCA gtgttttataggtgatgtgatatatataatctctcatgtgttgcttttagATCTGTATTAAAGGCAACAATGCATTCAAAGGCTACCTAAGGGACGCAGAGAAAACACAAGAAGTACTCGACAAGGATGGATGGCTTCACGCTGGGGACATTGGTCGGTGGCTTCCAgtcaggaactctcaataatttgcaaggccttctgtgctgtgactgaggat #### Acta2_ID6908_6 --> 2 - 1 Original Alignment ccGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTg gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagccAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTggtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from CESAR ccGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTg gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagccAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTggtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Spaln_aa2Genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagCCAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Spaln_nt2Genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagCCAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Pairagon CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagCCAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Exonerate_protein2genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagCCAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Exonerate_coding2genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagCCAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from GeneWise CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gagacttgtggtagcattcatgtctactgtgtgtgcacttttgctttcagCCAAACGTGAGATAGTCCGTGACATCAAGGAGAAGTTGTGTTATGTGGCTCTGGACTTTGAAAATGAGATGGCCACAGCTGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATTGGAAATGAACACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtaagtaattaagggtgatgttattttgttctgtaccaagaacaagccta #### Acta2_ID6910_4 --> 0 - 1 Original Alignment ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTggtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga Alignment from CESAR ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTg ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTggtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga Alignment from Spaln_aa2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga Alignment from Spaln_nt2Genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga Alignment from Pairagon ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga Alignment from Exonerate_protein2genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga Alignment from Exonerate_coding2genome ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga Alignment from GeneWise ATTATGTTTGAGACCTTCAATGTCCCCGCCATGTATGTGGCTATTCAGGCTGTGCTGTCCCTCTATGCCTCTGGACGTACAACTG ggggtatactcactaatcccctatgtaagtttattattctttcctcccagATTATGTTTGAGACCTTTAATGTCCCTGCCATGTATGTGGCTATTCAGGCTGTGCTGTCACTCTATGCCTCTGGACGTACAACTGgtgagtggccaggatggtgagaaccttgatcaaaaccatccccgtcatga #### Actn3_ID698_12 --> 2 - 2 Original Alignment gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa tgatactttggctatgactgcctatggggacaatgtttttatattcacaggcAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCaagtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc Alignment from CESAR gcAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCaa tgatactttggctatgactgcctatggggacaatgtttttatattcacaggcAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCaagtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc Alignment from Spaln_aa2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactttggctatgactgcctatggggacaatgtttttatattcacagGCAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc Alignment from Spaln_nt2Genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactttggctatgactgcctatggggacaatgtttttatattcacagGCAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc Alignment from Pairagon GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactttggctatgactgcctatggggacaatgtttttatattcacagGCAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc Alignment from Exonerate_protein2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactttggctatgactgcctatggggacaatgtttttatattcacagGCAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc Alignment from Exonerate_coding2genome GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactttggctatgactgcctatggggacaatgtttttatattcacagGCAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc Alignment from GeneWise GCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGCGTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACATCGCGGCCCTGGCCCAGGAACTCAA tgatactttggctatgactgcctatggggacaatgtttttatattcacagGCAAAGAGGAAACATTAAACCAGCATGACTATGAGTCAGCCTCACTGCAGGACGTGCGAGCACTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTAGCTGCACACCAAGACCGGGTGGAACACATTGCGGCCCTGGCCCAGGAACTCAAgtaagcatggccagaggcaatgcatcatccctgcctcattagaccctggc #### Actn3_ID703_7 --> 0 - 1 Original Alignment GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAg aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAggtacttcaatggatggaagtacccctaaatggtcctcccctactctccct Alignment from CESAR GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAg aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAggtacttcaatggatggaagtacccctaaatggtcctcccctactctccct Alignment from Spaln_aa2Genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAGgtacttcaatggatggaagtacccctaaatggtcctcccctactctccct Alignment from Spaln_nt2Genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAGgtacttcaatggatggaagtacccctaaatggtcctcccctactctccct Alignment from Pairagon GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAGgtacttcaatggatggaagtacccctaaatggtcctcccctactctccct Alignment from Exonerate_protein2genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAGgtacttcaatggatggaagtacccctaaatggtcctcccctactctccct Alignment from Exonerate_coding2genome GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAGgtacttcaatggatggaagtacccctaaatggtcctcccctactctccct Alignment from GeneWise GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG aacacatgaaaaaatgcccatcatcatttctccacgccctttcgtttcagGATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTAGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCGGAAGgtacttcaatggatggaagtacccctaaatggtcctcccctactctccct #### Actr1a_ID9874_6 --> 1 - 0 Original Alignment tTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagtTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg Alignment from CESAR tTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagtTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg Alignment from Spaln_aa2Genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagTTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg Alignment from Spaln_nt2Genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagTTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg Alignment from Pairagon TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagTTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg Alignment from Exonerate_protein2genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagTTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg Alignment from Exonerate_coding2genome TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagTTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg Alignment from GeneWise TTATGCCACGGGCAGAACCACAGGCGTGGTGTTGGATTCTGGGGATGGTGTCACCCATGCAGTCCCGATTTATGAAGGCTTCGCCATGCCTCACTCCATCATGCGCATCGACATCGCTGGCCGGGATGTCTCACGCTTCCTCCGCCTCTACCTACGGAAGGAGGGCTATGATTTCCACTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAA tgcactctaaagagtgtgaggctcagtgctcactcttctctcccttgaagTTATGCCACGGGCAAAACCACAGGTGTAGTGTTGGATTCTGGGGATGGTATCACCCATGCAGTCCCAATTTATGAAGGCTTTGCCATGCCTCACTCCATCATGCGCATTGACATTGCTGGACGGGATGTGTCACGCCTCCTCCGCCTCTACTTACGGAAGGAGGGCTATGATTTCCATTCCTCCTCTGAGTTTGAGATTGTCAAGGCCATAAAGGAAgtgagtgctgaattgggggatgggcatggaattatagtgatccaccttgg #### Actr1a_ID9878_2 --> 0 - 2 Original Alignment GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACta accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACtagtgagaaattggttgtaggtagagctagcacattcaagggatatggccat Alignment from CESAR GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACta accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACtagtgagaaattggttgtaggtagagctagcacattcaagggatatggccat Alignment from Spaln_aa2Genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACTAgtgagaaattggttgtaggtagagctagcacattcaagggatatggccat Alignment from Spaln_nt2Genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACTAgtgagaaattggttgtaggtagagctagcacattcaagggatatggccat Alignment from Pairagon GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACTAgtgagaaattggttgtaggtagagctagcacattcaagggatatggccat Alignment from Exonerate_protein2genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACTAgtgagaaattggttgtaggtagagctagcacattcaagggatatggccat Alignment from Exonerate_coding2genome GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACTAgtgagaaattggttgtaggtagagctagcacattcaagggatatggccat Alignment from GeneWise GGATCCGGTGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCCAAATACTGCTTTCCAAACTA accagatgagtcatactggctggcaacttctctctcttttttttattaagGGATCAGGCGTGATTAAAGCTGGCTTTGCTGGTGATCAGATCCCTAAATACTGCTTTCCAAACTAgtgagaaattggttgtaggtagagctagcacattcaagggatatggccat #### Acy3_ID249_3 --> 0 - 1 Original Alignment CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCt cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCtgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt Alignment from CESAR CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCt cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCtgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt Alignment from Spaln_aa2Genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCTgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt Alignment from Spaln_nt2Genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCTgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt Alignment from Pairagon CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCTgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt Alignment from Exonerate_protein2genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCTgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt Alignment from Exonerate_coding2genome CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCTgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt Alignment from GeneWise CGGCAGAACCCGGGGATGCCCTGCCGCCTCTTTCTGTATGAGCCAGCTGGGACGGAGACCTTCAGCGTGGAATCTATATCCAAGAATGGAATCT cccctcaagaaagtgcagccatgactagtattctatttgtttcttcacagCGACAAAACCCTGGCATGCCCTGCCGCCTCTTTCTGTATGAGCCTGCTGGAATGGAAACCTTTAGTGTGGAATCTATATCCAAGATTGGAATCTgtaagttgacagtgagctgacaggggcaacatgggcaaagttgagttttt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacaggcATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacaggcATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc #### Add3_ID11212_4 --> 0 - 0 Original Alignment GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCC---GGCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct Alignment from CESAR GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCC---GGCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct Alignment from Spaln_aa2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCC---GGCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct Alignment from Spaln_nt2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCCG---GCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct Alignment from Pairagon GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCC---GGCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct Alignment from Exonerate_protein2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCC---GGCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct Alignment from Exonerate_coding2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCC---GGCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct Alignment from GeneWise GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcgcaagtgaatgattctaggtcttttttctctttctttgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCC---GGCCTCTCTTTTTCTGAAACAACAGCCTCCTCTTCAgtgagtttcttatttccatgttacttaccatgcatactcttgtcagacct #### Add3_ID11213_5 --> 0 - 0 Original Alignment GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc Alignment from CESAR GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc Alignment from Spaln_aa2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc Alignment from Spaln_nt2Genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc Alignment from Pairagon GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc Alignment from Exonerate_protein2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc Alignment from Exonerate_coding2genome GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc Alignment from GeneWise GTGAAAGTCAACATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCGCATGCTGCCATCTATTCAACACGCCCCGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCG ttaagtatcctggtgtgtgtcaatgaaattatccccaattttgctcctagGTAAAAGTGAATATAATCGGAGAAGTGGTGGACCAGGGGAGCACTGATCTGAAAATCGACCACACGGGCTTCAGCCCACATGCTGCCATCTATTCAATGCGCCCTGATGTGAAGTGTGTGATCCACATCCACACCCTTGCCACAGCAGCAgtaaacgagccacaggtgccagtctagcttcccaatactcatggtgcttc #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCACAACAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAGggtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCACAA---CAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGggtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCAC--AACAA-GCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCAC---AACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCA---CAACAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG tgacgcctatgatctactcgtatcatcctaactgtatcttcttctcctagTTACTGGACAGTGACCAGGAACTGTACCGCATCTTCCCTCTTACCATCGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCACCAATGCTGAAACAGACCGGCTTGAGGCACAACAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaatgacatgccacccaccttagactgcaggagtgggatgagagtcagc #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GTgtgtaagtgcccacatattcactccacgggttttgtctggcttttcaggGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from CESAR GTgt gGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg GTgtgtaattgcccacatattcactccacgggttttgtctggcttttcaggGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Spaln_aa2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Spaln_nt2Genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Pairagon GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Exonerate_protein2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from Exonerate_coding2genome GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat Alignment from GeneWise GTGT GGGCACACACGGGTACATGGCCCCCGAAGTCCTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG GTGTgtaagtgcccacatattcactccacgggttttgtctggcttttcagGGGCACACATGGGTACATAGCCCCCAAGGTACTACAAAAAGGTGTAGCCTATGACAGCAGTGCTGACTGGTTCTCCTTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgggttggcacatggggaacaagaatgttggggggagagccctgcaaat #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtaagatagcttaggggatgaaaaagtttattgttcttgcaggtGGGGAC Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtaagatagcttaggggatggttcacatttggtattttacaggtGGGGAC Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagatagcttaggggatgaaaaagtttattgttcttgcagGTGGGGAC Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagatagcttaggggatgaaaaagtttattgttcttgcagGTGGGGAC Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagatagcttaggggatgaaaaagtttattgttcttgcagGTGGGGAC Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagatagcttaggggatgaaaaagtttattgttcttgcagGTGGGGAC Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagatagcttaggggatgaaaaagtttattgttcttgcagGTGGGGAC Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttggcctgccttccatgactcagtcccaggggattgttttctagGACTGTCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtaagatagcttaggggatgaaaaagtttattgttcttgcagGTGGGGAC #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from CESAR CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Pairagon CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Exonerate_coding2genome CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from GeneWise CCATACATTGAGGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa #### Afap1l2_ID12246_17 --> 2 - 1 Original Alignment agATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAg tactatgcctcatctgtctctgcagacatagtgttatttcactcttacagagATCAAACTTGGGAAGAATCGGACAGAGGCAGAAGTAAAGCGGTTTACAGAGGAGGAGGAGAGGCTGGAGAGAAGCAAGGAGGAGGTCAGAGGGCATCTGGCTCAGCTCCGGAGAGAGAAGCGGAAGCTCAAAGAAGCCCTGTTGAGATGCACAggtgaggagcctctgcatagggggctggggtgaagtgcttgcccagcaaca Alignment from CESAR agATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAg tactatgcctcatctgtctctgcagacatagtgttatttcactcttacagagATCAAACTTGGGAAGAATCGGACAGAGGCAGAAGTAAAGCGGTTTACAGAGGAGGAGGAGAGGCTGGAGAGAAGCAAGGAGGAGGTCAGAGGGCATCTGGCTCAGCTCCGGAGAGAGAAGCGGAAGCTCAAAGAAGCCCTGTTGAGATGCACAggtgaggagcctctgcatagggggctggggtgaagtgcttgcccagcaaca Alignment from Spaln_aa2Genome AGATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAG tactatgcctcatctgtctctgcagacatagtgttatttcactcttacagAGATCAAACTTGGGAAGAATCGGACAGAGGCAGAAGTAAAGCGGTTTACAGAGGAGGAGGAGAGGCTGGAGAGAAGCAAGGAGGAGGTCAGAGGGCATCTGGCTCAGCTCCGGAGAGAGAAGCGGAAGCTCAAAGAAGCCCTGTTGAGATGCACAGgtgaggagcctctgcatagggggctggggtgaagtgcttgcccagcaaca Alignment from Spaln_nt2Genome AGATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAG tactatgcctcatctgtctctgcagacatagtgttatttcactcttacagAGATCAAACTTGGGAAGAATCGGACAGAGGCAGAAGTAAAGCGGTTTACAGAGGAGGAGGAGAGGCTGGAGAGAAGCAAGGAGGAGGTCAGAGGGCATCTGGCTCAGCTCCGGAGAGAGAAGCGGAAGCTCAAAGAAGCCCTGTTGAGATGCACAGgtgaggagcctctgcatagggggctggggtgaagtgcttgcccagcaaca Alignment from Pairagon AGATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAG tactatgcctcatctgtctctgcagacatagtgttatttcactcttacagAGATCAAACTTGGGAAGAATCGGACAGAGGCAGAAGTAAAGCGGTTTACAGAGGAGGAGGAGAGGCTGGAGAGAAGCAAGGAGGAGGTCAGAGGGCATCTGGCTCAGCTCCGGAGAGAGAAGCGGAAGCTCAAAGAAGCCCTGTTGAGATGCACAGgtgaggagcctctgcatagggggctggggtgaagtgcttgcccagcaaca Alignment from Exonerate_protein2genome AGATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAG tactatgcctcatctgtctctgcagacatagtgttatttcactcttacagAGATCAAACTTGGGAAGAATCGGACAGAGGCAGAAGTAAAGCGGTTTACAGAGGAGGAGGAGAGGCTGGAGAGAAGCAAGGAGGAGGTCAGAGGGCATCTGGCTCAGCTCCGGAGAGAGAAGCGGAAGCTCAAAGAAGCCCTGTTGAGATGCACAGgtgaggagcctctgcatagggggctggggtgaagtgcttgcccagcaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGATCAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGGAGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGTTGAGATGCACAG tactatgcctcatctgtctctgcagacatagtgttatttcactcttacagAGATCAAACTTGGGAAGAATCGGACAGAGGCAGAAGTAAAGCGGTTTACAGAGGAGGAGGAGAGGCTGGAGAGAAGCAAGGAGGAGGTCAGAGGGCATCTGGCTCAGCTCCGGAGAGAGAAGCGGAAGCTCAAAGAAGCCCTGTTGAGATGCACAGgtgaggagcctctgcatagggggctggggtgaagtgcttgcccagcaaca #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAggtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAggtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tgctctctaggcctgcagccagacagtaccgtctctttttgcttttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACCCCACGAAGCACCATGGTTAAGTTACAGGCGGAGCAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACGATGGCTTCCGCCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGCTAAGAGTTACTGGTGCAGgtaagtggactaaagccccacctagcacttataacctaacaagttagccc #### Afap1l2_ID12255_8 --> 0 - 0 Original Alignment TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagatacgccgaccccaaatgttgcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGCACTTGGCCTACAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc Alignment from CESAR TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagatacgccgaccccaaatgttgcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGCACTTGGCCTACAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc Alignment from Spaln_aa2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagatacgccgaccccaaatgttgcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGCACTTGGCCTACAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc Alignment from Spaln_nt2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagatacgccgaccccaaatgttgcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGCACTTGGCCTACAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc Alignment from Pairagon TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagatacgccgaccccaaatgttgcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGCACTTGGCCTACAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc Alignment from Exonerate_protein2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagatacgccgaccccaaatgttgcagTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGCACTTGGCCTACAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc Alignment from Exonerate_coding2genome ccaagggtctcttccttggactatagatacgccgaccccaaatgttgcagtgctacaaatcatccaaagaccacagtcctcagctggatgtgaacttgcggggcagcagcattgtgcacaaagagaagcaagtgcggaagaaaggacacaagctcaaaatcacaccaatgaatgctgatgttattgcacttggcctacagagcaaggaccaagctgagcagtggcttcgggtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc Alignment from GeneWise GTGATCAGGGACACCAGGCTCTTGTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggactatagATACGCCGACCCCAAATGTTGCAGTGCTACAAATCATCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTTATTGCACTTGGCCTACAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGGgtatctagagtacctcaccaccttctctagtgctaaaagcaagggccccc #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from CESAR GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Spaln_nt2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Pairagon GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc Alignment from GeneWise GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacgggtacccataggcagggactggttatacagtttgttttgttctcagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATTGCATGCCTCAAGAATCTGCAAATGAAAgtatttctcagggccacagtgggagggacatatgatgcacacatggctgc #### Ak3_ID6205_3 --> 2 - 0 Original Alignment gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacaggtTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag Alignment from CESAR gaTTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacaggtTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag Alignment from Spaln_aa2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacagGTTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag Alignment from Spaln_nt2Genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacagGTTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag Alignment from Pairagon GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacagGTTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag Alignment from Exonerate_protein2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacagGTTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag Alignment from Exonerate_coding2genome GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacagGTTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag Alignment from GeneWise GATTTCCAAGGACACTTCCACAGGCAGAAGCCCTGGATAAAGTTTATCAGATAGACACAGTGATAAATCTCAACGTGCCCTTTGAGGTCATTAAACAGCGCCTTACTGCTCGCTGGATACATCCTGCCAGTGGTCGAGTATACAACATTGAATTCAACCCTCCCAAGACTGTG ttcgcctaacaatctttctctcgtatgtatcagagaatgttttcctacagGTTTTCCGAGGACACTTCCACAGGCAGAGTCACTGGATAAAGTTTATCAGATAGACGCAGTGATAAATCTTAATGTGCCATTTGAGGTCATTAAACAGCGTCTTACTGCTCGCTGGATACATCCAGCAAGTGGTCGAGTACACAACATGGAATTCAACCCTCCCAAGACTGTGgtaagctagtgtagcatgctcggcagacatctatcctaacaggtgtttag #### Aldh18a1_ID7969_14 --> 2 - 0 Original Alignment tcAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagtcAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca Alignment from CESAR tcAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagtcAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca Alignment from Spaln_aa2Genome TCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca Alignment from Spaln_nt2Genome TCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca Alignment from Pairagon TCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca Alignment from Exonerate_protein2genome TCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca Alignment from Exonerate_coding2genome TCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca Alignment from GeneWise TCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAG cacttaatctctcccctctttttctccatctgccttctctacccctgcagTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAAACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAAATCATTGACACGCTCCGAGTGGAACAAgtaagtgaacacatgggaaacataagatcaccaagagtaacttccaagca #### Aldh18a1_ID7970_13 --> 0 - 1 Original Alignment GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCg acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTggtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag Alignment from CESAR GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCg acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTggtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag Alignment from Spaln_aa2Genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTGgtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag Alignment from Spaln_nt2Genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTGgtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag Alignment from Pairagon GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTGgtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag Alignment from Exonerate_protein2genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTGgtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag Alignment from Exonerate_coding2genome GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTGgtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag Alignment from GeneWise GTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCG acaccagcgagaagttgaggaaccactggcacctcattctgtctctctagGTAAACACCAGAGAAGAAGTTGAGGATCTTTGCCGTCTAGACAAAATAATAGATCTGATCATTCCCCGAGGATCCTCTCAGTTAGTAAAAGACATTCAAAAAGCTGCTAAAGGCATACCAGTGATGGGCCATAGTGAAGGTATCTATCACATGTATGTGGATTCTGAAGCCAGTGTGGATAAGGTCACCCGACTTGgtaatatgacctagaggtcctgaagcatcaagtgaaagattctcttgaag #### Aldh18a1_ID7977_6 --> 0 - 1 Original Alignment GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAg gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAggtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt Alignment from CESAR GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAg gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAggtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt Alignment from Spaln_aa2Genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAGgtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt Alignment from Spaln_nt2Genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAGgtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt Alignment from Pairagon GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAGgtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt Alignment from Exonerate_protein2genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAGgtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt Alignment from Exonerate_coding2genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAGgtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt Alignment from GeneWise GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG gccaacaaccgagttgggtgatgctactccatttttcttttgttctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTCGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGACGTAGAAGgtacgctatagtgactcttccttttgcgggcacacatgagcagtgggttt #### Aldh18a1_ID7979_4 --> 0 - 0 Original Alignment GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag Alignment from CESAR GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag Alignment from Spaln_aa2Genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag Alignment from Spaln_nt2Genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag Alignment from Pairagon GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag Alignment from Exonerate_protein2genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag Alignment from Exonerate_coding2genome GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag Alignment from GeneWise GCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTGATGGCCTTGTACGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCCCAG tcctggcctatagtgccctttttgtgtacccttccttctctgtcttgtagGCAATTCCAGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTGGACTAATGGCCTTGTATGAGGCCATGTTTACACAGTACAGCATCTGTGCTGCACAGgtatcctactgaccccatgattggatcttttaaggatggttctcatcaag #### Aldh18a1_ID7980_3 --> 0 - 0 Original Alignment GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct Alignment from CESAR GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct Alignment from Spaln_aa2Genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct Alignment from Spaln_nt2Genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct Alignment from Pairagon GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct Alignment from Exonerate_protein2genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct Alignment from Exonerate_coding2genome GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct Alignment from GeneWise GTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATG gaaagaaagactggtgctgtgactagtgtcttttgggttcttgtccccagGTTTCAGTTCTACAGAATCAGGGCCGAGAGATGATGCTAGTAACCAGTGGAGCTGTTGCCTTGGGTAAACAGCGCCTACGCCATGAAATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCATTCAGGCCAGAACCATCTGAAGGAGATGgtgagtgctcgatgctgtttcgttgtggggtttttaggtattgcttctct #### Aldh18a1_ID7981_2 --> 2 - 0 Original Alignment atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagatCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc Alignment from CESAR atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagatCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc Alignment from Spaln_aa2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc Alignment from Spaln_nt2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc Alignment from Pairagon ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc Alignment from Exonerate_protein2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc Alignment from Exonerate_coding2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc Alignment from GeneWise ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG atcgtattttgagcccatggttgtttaacaaaccatcttctctgccatagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGAGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtcagtgtcatgtgaaataactgcattatttattaagttgaactgatttc #### Aldh1a1_ID4797_10 --> 0 - 0 Original Alignment ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagATTGACAAAGAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt Alignment from CESAR ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagATTGACAAAGAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt Alignment from Spaln_aa2Genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagATTGACAAAGAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt Alignment from Spaln_nt2Genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagATTGACAAAGAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt Alignment from Pairagon ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagATTGACAAAGAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt Alignment from Exonerate_protein2genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagATTGACAAAGAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt Alignment from Exonerate_coding2genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagATTGACAAAGAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt Alignment from GeneWise AACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG attgaggaggctggcttttctcctaacattttacatttcctttttcacagattgacaaagAGCAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgagttcttgaaatgcttgttttagtcatagcaccatgtgtcatggttt #### Aldh3b1_ID200_7 --> 2 - 0 Original Alignment ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagccCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata Alignment from CESAR ccCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagccCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata Alignment from Spaln_aa2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagCCCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata Alignment from Spaln_nt2Genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagCCCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata Alignment from Pairagon CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagCCCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata Alignment from Exonerate_protein2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagCCCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata Alignment from Exonerate_coding2genome CCCCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagCCCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata Alignment from GeneWise --CCCACAGTGTTAGTGGACGTGCAGGAGACAGAGCCTGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATCGAGTTCATGAACCGGCGGGAGAAGCCACTGGCGCTGTATGCCTTCTCCAAGAGAAGCCAG ctagattttagacttggttgcctcctactgacctgtcccctggtttgcagCCCCTACAGTTTTAGTGGATGTCCAGGAGACAGAGCCTGTGATGCAGGAGGATATTTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGTCTGGATGAAGCCATTGAGTTCATGAACCGGAGGGAGAAGCCCCTAGCACTGTATGCCTTTTCCAAGCGGAGCCAGgtctgttatgtacatgaggaaagggtggatgtaggagaggtgtgttaata #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAggtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAggtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatactggcaacctcactccctttgccccaccacagaaATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAggtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatactggcaacctcactccctttgccccaccacagaaATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAggtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct #### Ankrd13d_ID463_10 --> 0 - 2 Original Alignment GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGag tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGaggtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg Alignment from CESAR GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGag tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGaggtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg Alignment from Spaln_aa2Genome GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGAG tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGAGgtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg Alignment from Spaln_nt2Genome GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGAG tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGAGgtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg Alignment from Pairagon GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGAG tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGAGgtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg Alignment from Exonerate_protein2genome GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGAG tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGAGgtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg Alignment from Exonerate_coding2genome GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGAG tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGAGgtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg Alignment from GeneWise GCTCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCTACAGCTATCTCTGCTGAGGAATACTTTGACCCCAGCTTCAGCCTGGAATCCAGAAACATTGGCCGCCCCATTGAGATGTCTAGCAAAGTGCAGAG tggggtttcctcctgtgcttttaaggctcttccaattcaatttctttcagGGTCCTGTGCAACAGTCATCCAGCCCCACCAACCCTAAAACAATCTCTGCAGAGGAATACTTTGACCCCAGCTTTAGCTTGGAATCCAAAAACATTGGTCACCCAATTGAAATGTCTAGCAAAGTGCAGAGgtaaattcttggggaagctagggtgcccaatccaaggccatccaaagatg #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagggGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagggGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagGGGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagGGGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagGGGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagGGGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagGGGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cacatcttacttagatacacaaggatctcccatcctctgtctcctttcagGGGGGAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACACTCTTCACACACTTTGgtaaggttggtgagggtaggggttggtaaggctgggtaggtggggtttcc #### Ankrd13d_ID466_7 --> 1 - 0 Original Alignment gAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcaggAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc Alignment from CESAR gAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcaggAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc Alignment from Spaln_aa2Genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc Alignment from Spaln_nt2Genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc Alignment from Pairagon GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc Alignment from Exonerate_protein2genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc Alignment from Exonerate_coding2genome GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc Alignment from GeneWise GAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTACGAGGCAAAG gctgtgtctggagagtattggccttcactgctgtctcctaaatcctgcagGAACAAATGTGGTATCTGGGGATGGCGGTCTGAGAAGATGGAGTCTGTTAGTGGCTATGAGGCAAAGgtctgtggggctgttggaagatagaccagtgggtaaacctctttatgtcc #### Ankrd13d_ID468_5 --> 2 - 1 Original Alignment taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gatctatttgggtggggcaagataccaaaactcatttttctttttaacagtaCCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATggtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca Alignment from CESAR taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gatctatttgggtggggcaagataccaaaactcatttttctttttaacagtaCCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATggtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca Alignment from Spaln_aa2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctatttgggtggggcaagataccaaaactcatttttctttttaacagTACCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATGgtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca Alignment from Spaln_nt2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctatttgggtggggcaagataccaaaactcatttttctttttaacagTACCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATGgtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca Alignment from Pairagon TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctatttgggtggggcaagataccaaaactcatttttctttttaacagTACCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATGgtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca Alignment from Exonerate_protein2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctatttgggtggggcaagataccaaaactcatttttctttttaacagTACCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATGgtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca Alignment from Exonerate_coding2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctatttgggtggggcaagataccaaaactcatttttctttttaacagTACCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATGgtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca Alignment from GeneWise TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctatttgggtggggcaagataccaaaactcatttttctttttaacagTACCTCTTGTGTCCAAAATGTGCCCAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGACACTAGTCTCTTAGGGTTTGAGCACATGACCTGGCAGCGTGGCCAGAGGAGCTACATCTTCAGGGATCATGgtttgggtcatccacccaggtgagcagggtctgtggtgtagtgggtttca #### Ankrd13d_ID470_3 --> 2 - 0 Original Alignment tcCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagtcCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg Alignment from CESAR tcCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagtcCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg Alignment from Spaln_aa2Genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagTCCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg Alignment from Spaln_nt2Genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagTCCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg Alignment from Pairagon TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagTCCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg Alignment from Exonerate_protein2genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagTCCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg Alignment from Exonerate_coding2genome TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagTCCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg Alignment from GeneWise TCCTGCAGGAGGCAGTCAGCACTGGAGACCCTGAGATGGTACAGTTGGTACTCCAGTATCGGGACTTCCAGAGGGCCACACAGAGGTTGGCTGGCATTCCAGAACTGCTCAACAAACTCCGTCAG atggtgcctacaggactaacaaggcttgaactctcacacttctttcctagTCCTGCAAGAGGCAGTAAGTACTGGTGATCCTGAGATGATACAGTTGGTACTCCAGTATCAGGATTTCCAGAGGGCCACACAGAGGTTGGCTGGCATCCCAGAACTGTTAAATAAACCTCGCCAGgtgacgcaataaactaaacaacccattcgtgctgagcctgtccttggtgg #### Ankrd1_ID7101_4 --> 0 - 0 Original Alignment ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc Alignment from CESAR ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc Alignment from Spaln_aa2Genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc Alignment from Spaln_nt2Genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc Alignment from Pairagon ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc Alignment from Exonerate_protein2genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc Alignment from Exonerate_coding2genome ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc Alignment from GeneWise ACTGAACCTGTGGATGTGCCGAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAGAAATTCCTGTCAGACAAGAACAGCCCCGACGTCTGCGATGAG gagacaagagaagaggacagagggtactccccccccgtcccctccgccagAGTGAGCCTGTGGATGTGCCAAGGTTTCTGAAAGCTGCGCTGGAGAACAAACTGCCAGTTGTAGAAAAGTTCCTCTCAGACAAGAACAGCCCCGATGTCTGTGATGAGgtatgaggaagttctgtgctcacctgcctggactagacctccataaaggc #### Ankrd1_ID7102_3 --> 0 - 0 Original Alignment CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc Alignment from CESAR CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc Alignment from Spaln_aa2Genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc Alignment from Spaln_nt2Genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc Alignment from Pairagon CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc Alignment from Exonerate_protein2genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc Alignment from Exonerate_coding2genome CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc Alignment from GeneWise CTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTGAAGAAAAGGAAAAAATACAAGAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATG acactctatttttcccacctgaactcctaatatctcatttatataaacagCTCAAAAAGAAAAAACTAGAACAAAGATCAAAGCTTGAAAACTTAGAAGACCTTGAAATAATTGTTCAACTAAAGAAACGGAAAAAATACAAAAAAACCAAAGTTCCAGTTGTGAAGGAGCCAGAACCTGAAATTATGgtatttattatttagatattgcacagcctcataagttgcagagataagtc #### Ankrd2_ID8372_6 --> 0 - 0 Original Alignment CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc Alignment from CESAR CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc Alignment from Spaln_aa2Genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc Alignment from Spaln_nt2Genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc Alignment from Pairagon CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc Alignment from Exonerate_protein2genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc Alignment from Exonerate_coding2genome CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc Alignment from GeneWise CTGGACTGCACAGCCATGCACTGGGCCTGCCGTGGGGGCCACCTGGAGGTGGTGAGACTCCTGCAAAGCCGGGGGGCCGACACCAACGTGAGAGACAAG aaactcttctcccttaaactcttgcattctggtgtgcttctctcttgcagCTGGATTGCACAGCCATGCACTGGGCTTGCCATGGGGGACACCTAGAGGTGGTGAGACTTCTGCAAAGTCGGGGGGCTGATACCAATGTGCGAGACAAGgtgagttattagttggtgtacacaacattggggtgggtctgatcaaccgc #### Ankrd2_ID8373_7 --> 0 - 0 Original Alignment CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc Alignment from CESAR CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc Alignment from Spaln_aa2Genome CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc Alignment from Spaln_nt2Genome CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc Alignment from Pairagon CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc Alignment from Exonerate_protein2genome CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc Alignment from Exonerate_coding2genome CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc Alignment from GeneWise CTACTGAGCACTCCCCTGCATGTGGCCGTCCGTACTGGACACGTGGAGATTGTGGAACATTTTCTTTCCCTGGGCTTGGATATCAATGCCAAAGACAGA cacagcgcacccaagtccatgtgtcatcagtgctctctccatccttccagCTGCTAAGTACTCCCTTGCATGTGGCTGTCCATACTGGGCATGTGGAGATTGTGGAACATTTTCTTTCCCTGGGACTGGATATTAATGCTAAAGACAGAgtatggcttacatacctccctccttagccaacatgggtctaatggcagcc #### Anxa1_ID4765_5 --> 0 - 1 Original Alignment GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAg ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAggtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat Alignment from CESAR GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAg ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAggtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat Alignment from Spaln_aa2Genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat Alignment from Spaln_nt2Genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat Alignment from Pairagon GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat Alignment from Exonerate_protein2genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat Alignment from Exonerate_coding2genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat Alignment from GeneWise GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagagcggtaaaaaaaacttccactattctctctcccaccctggctcagGGACTTGGTACAGATGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtgatacccaatatctgattgcctgagctgggcatgtaattaaacaaaat #### Apba1_ID5228_2 --> 0 - 0 Original Alignment TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac Alignment from CESAR TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac Alignment from Spaln_aa2Genome TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac Alignment from Spaln_nt2Genome TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac Alignment from Pairagon TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac Alignment from Exonerate_protein2genome TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac Alignment from Exonerate_coding2genome TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac Alignment from GeneWise TCTCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCACGGAAGCCTCCACAAATAAAGAG tctacagggcctgatgcctcagctggtctactgctatgctttattcttagTCACCATCTCCTGGGAGTTCTTCACCTTTAGGCGCAGAGTCATCCAGCGTGCCTCTTCACCCAAGTGACCCCATGGAAGCCTCCAGAAATAAAGAGgtgtgtaaaaacctgcctaacccactacggttcaacagaatgattttaac #### Apba1_ID5230_3 --> 0 - 1 Original Alignment TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggtaggtccagaagagatgagccagggggcgtttatagatacatgccagag Alignment from CESAR TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggtaggtccagaagagatgagccagggggcgtttatagatacatgccagag Alignment from Spaln_aa2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtaggtccagaagagatgagccagggggcgtttatagatacatgccagag Alignment from Spaln_nt2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtaggtccagaagagatgagccagggggcgtttatagatacatgccagag Alignment from Pairagon TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtaggtccagaagagatgagccagggggcgtttatagatacatgccagag Alignment from Exonerate_protein2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtaggtccagaagagatgagccagggggcgtttatagatacatgccagag Alignment from Exonerate_coding2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtaggtccagaagagatgagccagggggcgtttatagatacatgccagag Alignment from GeneWise TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG ttaattgagctcttcccactttgcaattaactgggtacatcttgttttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtaggtccagaagagatgagccagggggcgtttatagatacatgccagag #### Arhgap19_ID8262_11 --> 0 - 1 Original Alignment TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGggtaaggggatgccttttactcattccttcttaggcttttgcgttttccct Alignment from CESAR TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGggtaaggggatgccttttactcattccttcttaggcttttgcgttttccct Alignment from Spaln_aa2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGgtaaggggatgccttttactcattccttcttaggcttttgcgttttccct Alignment from Spaln_nt2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGgtaaggggatgccttttactcattccttcttaggcttttgcgttttccct Alignment from Pairagon TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGG--------------------ATTCTTT agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTAAGGGGATGCCTTTTACTCATTCCTTcttaggcttttgcgttttccct Alignment from Exonerate_protein2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTaaggggatgccttttactcattccttcttaggcttttgcgttttccct Alignment from Exonerate_coding2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTaaggggatgccttttactcattccttcttaggcttttgcgttttccct Alignment from GeneWise TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGATTCTTT agctctgacacctgaccatgcaaaccacctttctcctggttgctttgtagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAGGGTAAGGGGatgccttttactcattccttcttaggcttttgcgttttccct #### Arhgap19_ID8271_2 --> 1 - 1 Original Alignment tGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAg caaaccagtccttttcaaacagtcccacccctcctgctctcgcttcttagtGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAggtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag Alignment from CESAR tGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAg caaaccagtccttttcaaacagtcccacccctcctgctctcgcttcttagtGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAggtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag Alignment from Spaln_aa2Genome TGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG caaaccagtccttttcaaacagtcccacccctcctgctctcgcttcttagTGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAGgtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag Alignment from Spaln_nt2Genome TGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG caaaccagtccttttcaaacagtcccacccctcctgctctcgcttcttagTGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAGgtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag Alignment from Pairagon TGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG caaaccagtccttttcaaacagtcccacccctcctgctctcgcttcttagTGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAGgtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag Alignment from Exonerate_protein2genome TGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG caaaccagtccttttcaaacagtcccacccctcctgctctcgcttcttagTGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAGgtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag Alignment from Exonerate_coding2genome CCGGTCTGCGACTCTGGCCGGAGTGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG caaaccagtccttttcaaacagtcccaCCCCTCCTGCTCTCGCTTCTTAGTGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAGgtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag Alignment from GeneWise TGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG caaaccagtccttttcaaacagtcccacccctcctgctctcgcttcttagTGATGCAATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTCCGTGGTCAGCCTAATATATTCAATCCTGATTTTTTTGTGGAGAAACTCCAGCATGAAAAACCAGAGGTGTTCACTGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCAGGAACTGAGTTGGCCCAGCTGATGGGCGAAGTGGACCTTAAGCTGCCTGGAGGGACTGGCCCAGCAGCGGGATTCTTCAGGTCCCTAATGTCTCTCAAGCAGAAAGgtaagacttgtggctatggaaggcaattgtaaccacaagatgagcgatag #### Arl2_ID1476_3 --> 1 - 0 Original Alignment aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc Alignment from CESAR aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc Alignment from Spaln_aa2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc Alignment from Spaln_nt2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc Alignment from Pairagon ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc Alignment from Exonerate_protein2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc Alignment from Exonerate_coding2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc Alignment from GeneWise ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgggtcagggtcacagagagactgcagcttacctcctcttcctagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGCCTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaactctgtggctccaacttgtagtaaggtctgttcctttgctgagctc #### Arl3_ID9952_4 --> 0 - 0 Original Alignment ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc Alignment from CESAR ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc Alignment from Spaln_aa2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc Alignment from Spaln_nt2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc Alignment from Pairagon ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc Alignment from Exonerate_protein2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc Alignment from Exonerate_coding2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc Alignment from GeneWise ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG tcattctttcctgtgttgtgtggaagaaatgcagttccttcttcccatagATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAGGAGACAGGCCAGgtttctgaattctttttgtgttgatcttactccaacccaaccctagcacc #### Arl3_ID9954_3 --> 0 - 0 Original Alignment GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca Alignment from CESAR GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca Alignment from Spaln_aa2Genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca Alignment from Spaln_nt2Genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca Alignment from Pairagon GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca Alignment from Exonerate_protein2genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca Alignment from Exonerate_coding2genome GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca Alignment from GeneWise GGATTTAACATCAAAAGCGTGCAGTCACAAGGTTTTAAGCTGAATGTATGGGACATTGGCGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTATTTTGAAAATACTGATATTCTC gtaagaattaactgatctttttgttgggggctatttcctttctctggcagGGGTTTAACATCAAAAGTGTCCAGTCGCAAGGTTTTAAGCTGAATGTATGGGATGTTGGTGGGCAGAGGAAAATCAGACCATACTGGAGAAGTTACTTTGAGAATACTGATATACTTgtgaggaatcattgtgcactcatcattactagcattgggcagaattggca #### Asah2_ID6659_15 --> 0 - 0 Original Alignment GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc Alignment from CESAR GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc Alignment from Spaln_aa2Genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc Alignment from Spaln_nt2Genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc Alignment from Pairagon GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc Alignment from Exonerate_protein2genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc Alignment from Exonerate_coding2genome GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc Alignment from GeneWise GAATTTGCACTTTATGGGATGAAGGATATGACCGTTGTTATCGCAGGTCTAAGCAATGTTTATACACATTACATTACCACATATGAAGAATACCAG agacaatttatataaaacctatatatggactgactgcccatttctcacagGAATTTGCACTTTATGGAATGAAAGATATGACTGTTGTAATTGCAGGGCTAAGCAATGTTTATACACATTACATCACCACATATGAAGAATACCAGgtctactattttttaatagatattctttttggatctctgaaccatgtttc #### Asrgl1_ID2596_4 --> 0 - 2 Original Alignment ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaa gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTaagtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc Alignment from CESAR ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTaa gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTaagtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc Alignment from Spaln_aa2Genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTAAgtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc Alignment from Spaln_nt2Genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTAAgtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc Alignment from Pairagon ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTAAgtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc Alignment from Exonerate_protein2genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTAAgtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc Alignment from Exonerate_coding2genome ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTAAgtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc Alignment from GeneWise ACACCTCATTGCTTTCTGACTGGCCATGGTGCAGAGAAATTTGCAGAAGACATGGGGATTCCACAGGTCCCTGTAGAAAAACTGATAACTGAGAGAACCAAGAAGCACCTGGAGAAAGAGAAGCTTGAGAAGGGAGCACAGAATGCTGACTGCCCTAA gtatgtgcgctaaaaaaaaatgcaaccctctcttactctcatcttttcagACACCCCATTGCTTTCTGACTGGCCATGGAGCAGAGAAATTTGCAGATGATATGGGGATTCCACAGGTGCCAGTAGAAAAACTAATAACTGAGAAAACCAAGAGGCACTTGGAGAAGGAGAAGCTTGAGAAGGGAGCACAAAATGCTGACTGCCCTAAgtgagatccaaatcctgagcgatgttacaggggaagagcgcaactcctcc #### Asrgl1_ID2598_2 --> 2 - 1 Original Alignment ccTCCATCGATGTGAGTCTC------GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAg tgagaacaggcagaccagttcttaatgaatggcctccttttttctcatagccTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTA---GATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAggtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc Alignment from CESAR ccTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAg tgagaacaggcagaccagttcttaatgaatggcctccttttttctcatagccTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTAGATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAggtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc Alignment from Spaln_aa2Genome CCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgaatggcctccttttttctcatagCCTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTAGATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc Alignment from Spaln_nt2Genome CCTCCATCGATGTGAGTCTCG---TGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgaatggcctccttttttctcatagCCTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTAGATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc Alignment from Pairagon CCTCCATCGATG------TGAGTCTCGTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgaatggcctccttttttctcatagCCTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTAG---ATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc Alignment from Exonerate_protein2genome GCCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgaatggcctccttttttctcataGCCTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTAGATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc Alignment from Exonerate_coding2genome GCCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgaatggcctccttttttctcataGCCTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTAGATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc Alignment from GeneWise GCCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgaatggcctccttttttctcataGCCTCTATTGATGTGAGTCTGAGTCTTGTGGTGGTAGATGTCGGTGGAGCAACCAACATCTCATCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGATGGTTACAAACTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTCGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtgagctatgcttgctaggtgaatgattccaggctacaaggttcctgtcc #### Atad1_ID6723_7 --> 0 - 0 Original Alignment GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa Alignment from CESAR GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa Alignment from Spaln_aa2Genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa Alignment from Spaln_nt2Genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa Alignment from Pairagon GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa Alignment from Exonerate_protein2genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa Alignment from Exonerate_coding2genome GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa Alignment from GeneWise GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT ataacttctccaatatccttggcagttgtttaactgttctttctctttagGCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAATgtagggtgatattctctccgagtccctacagatgggctttttatgcataa #### Atl3_ID2161_3 --> 0 - 0 Original Alignment AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga Alignment from CESAR AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga Alignment from Spaln_aa2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga Alignment from Spaln_nt2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga Alignment from Pairagon AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga Alignment from Exonerate_protein2genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga Alignment from Exonerate_coding2genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga Alignment from GeneWise AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG acatgcctctagcaaagataaagatgttctccttaaattccctcctacagAGAGAGGGTGGGCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGATAGGATTTTCATGGCGTGGAGGGTCTGATCCAGAAACAACTGGGATTCAGATTTGGAGTGAAGTTTTCACAGCGAAGAAGCCATGTGGAAAAAAGgtaaatatgttggaaacaaaaaaatttagatttcacgagagaatgactga #### Atl3_ID2171_11 --> 0 - 0 Original Alignment GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt Alignment from CESAR GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt Alignment from Spaln_aa2Genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt Alignment from Spaln_nt2Genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt Alignment from Pairagon GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt Alignment from Exonerate_protein2genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt Alignment from Exonerate_coding2genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt Alignment from GeneWise GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatgttttcattttaagaacactcatgtttccccttttagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaaaggatgggagaggtacatgagatgctaggctttgtatgtgattttt #### Atrnl1_ID12432_5 --> 1 - 1 Original Alignment gATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAg ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcaggATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAggtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga Alignment from CESAR gATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAg ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcaggATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAggtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga Alignment from Spaln_aa2Genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcagGATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAGgtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga Alignment from Spaln_nt2Genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcagGATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAGgtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga Alignment from Pairagon GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcagGATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAGgtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga Alignment from Exonerate_protein2genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcagGATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAGgtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga Alignment from Exonerate_coding2genome GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcagGATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGC---ACAAGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAGgtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga Alignment from GeneWise GATCAATTCCTGTCCTAACAACTGCTCTGGTCATGGAAAGTGTACAACCAGTGTCTCTGTTGCAAGTCAAGTGTATTGTGAATGCGACAAATACTGGAAAGGGGAAGCATGTGACATTCCTTACTGTAAAGCCAATTGTGGGAGTCCAGATCATGGCTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAACGATAGTTGGCAAG ttcctaaactccagaatgggcagccatttgtgcgtgcgtttgatttgcagGATCAATTCCTGTCCTAACAACTGCTCTGGCCATGGAAAGTGCACA---AGTGTCTCTGTTGCAACTCAGGTGTATTGCGAATGTGACAAATACTGGAAAGGGGAAGCATGTGATATTCCTTACTGTAAAGCCAATTGTGAGAGTCCAGATCATGGTTACTGTGACCTAACAGGAGAGAAACTCTGTGTCTGCAATGATAGTTGGCAAGgtaaggtcatgctgcggtgtgatgggggtgctgcaaggctagcatgcaga #### Atrnl1_ID12436_9 --> 2 - 2 Original Alignment ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tatttttggtggttctgcacatcattactgcttctgattattctttgtagccTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTtggtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc Alignment from CESAR ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tatttttggtggttctgcacatcattactgcttctgattattctttgtagccTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTtggtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc Alignment from Spaln_aa2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tatttttggtggttctgcacatcattactgcttctgattattctttgtagCCTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTTGgtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc Alignment from Spaln_nt2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tatttttggtggttctgcacatcattactgcttctgattattctttgtagCCTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTTGgtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc Alignment from Pairagon CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tatttttggtggttctgcacatcattactgcttctgattattctttgtagCCTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTTGgtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc Alignment from Exonerate_protein2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tatttttggtggttctgcacatcattactgcttctgattattctttgtagCCTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTTGgtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc Alignment from Exonerate_coding2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tatttttggtggttctgcacatcattactgcttctgattattctttgtagCCTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTTGgtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc Alignment from GeneWise CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tatttttggtggttctgcacatcattactgcttctgattattctttgtagCCTCCAACACTTGGCTAGTTCCAGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCATTGCCTGGCAATAAGTATGGGCTGGTGGATGACCTCTATAAGTATGAAGTCAACACCAGGACTTGgtagatcagtcagactcttatcactcattgtctttttatagcagtgccgc #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcggaccaaccttctctgccaacactctttccccattggctctcctagATGCGCTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGGTTTGCGATTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGCCACCTTGTAGATCCAAAGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtaagagaaagggagtcagataagagaaaggggggggatctgggctgagc #### Bbs1_ID721_13 --> 2 - 1 Original Alignment gtGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAg cagaatctggtataggccagggggtggatttcttcttgttttacttgcaggcAGTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAggtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag Alignment from CESAR gtGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAg cagaatctggtataggccagggggtggatttcttcttgttttacttgcaggcAGTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAggtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag Alignment from Spaln_aa2Genome GTGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAG cagaatctggtataggccagggggtggatttcttcttgttttacttgcagGCAGTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAGgtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag Alignment from Spaln_nt2Genome GTGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAG cagaatctggtataggccagggggtggatttcttcttgttttacttgcagGCAGTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAGgtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag Alignment from Pairagon GTGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAG cagaatctggtataggccagggggtggatttcttcttgttttacttgcagGCAGTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAGgtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag Alignment from Exonerate_protein2genome GTGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAG cagaatctggtataggccagggggtggatttcttcttgttttacttgcagGCAGTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAGgtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag Alignment from Exonerate_coding2genome GTGGCGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAG cagaatctggtataggccagggggtggatttcttcttgttttacttgcagGCAGTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAGgtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag Alignment from GeneWise CGGCCTGATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCACAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAGCTGGCACAG cagaatctggtataggccagggggtggatttcttcttgttttacttgcaggcagTGGCCTAATCATCAAGATCCTGAAGCGAACAGCTGTGTTTACAGAAGGGACGGGTGAGGTGGGCCCACTGCTAGCACAGACTACAAAACTCAGTGTCCCTCGAAAAGGTCGGCTGTACGTCGATCAGACGCTGCGGGAGCGGGAAGCTGGCACAGgtaagaagatatgtaagagtcagaggatgaattggaagatggcaggatag #### Bbs1_ID724_10 --> 1 - 0 Original Alignment aGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagaGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca Alignment from CESAR aGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagaGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca Alignment from Spaln_aa2Genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagAGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca Alignment from Spaln_nt2Genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagAGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca Alignment from Pairagon AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagAGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca Alignment from Exonerate_protein2genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagAGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca Alignment from Exonerate_coding2genome AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagAGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca Alignment from GeneWise AGACTCCAAACACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGGTGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAG agctaggtgcaaactctgtgggctccataaactactttttggttttctagAGACTCTAAACATCCCAAGTACTGCATAGAATTGAGTGTCCAACCAGTGGGTCTGGTTCGGGTACACAAGGTCCTGGTCGTGGGTAGCACCCAAGAGGGCTTGCATGGCTTTACCCACAAAgtaggttagtacctctctgacatgctgcctacttcttgaggctagaccca #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCCC------ACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCaggtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCCC------ACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCaggtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCCC------ACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCC------CACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCC------CACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCCC------ACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCCC------ACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtcttagcttaggtgtattgactacattgctcctgcttctttctgcagGTATCCTTGTTATCTGTGGATGGGATGCACCAGAACCTGCCTCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCTCAGCCC------ACGGCTGCCTCAGCCAGGTCTCGTCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgagttgagctagggactgggtgagataccctttaaatgcaaccaactt #### Best1_ID2636_3 --> 2 - 1 Original Alignment gtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAg gctacaactcatgcccacccctttcgtatgttaaatttctcattttttaggtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAggtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca Alignment from CESAR gtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAg gctacaactcatgcccacccctttcgtatgttaaatttctcattttttaggtTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAggtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca Alignment from Spaln_aa2Genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacaactcatgcccacccctttcgtatgttaaatttctcattttttagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca Alignment from Spaln_nt2Genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacaactcatgcccacccctttcgtatgttaaatttctcattttttagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca Alignment from Pairagon GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacaactcatgcccacccctttcgtatgttaaatttctcattttttagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca Alignment from Exonerate_protein2genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacaactcatgcccacccctttcgtatgttaaatttctcattttttagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca Alignment from Exonerate_coding2genome GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacaactcatgcccacccctttcgtatgttaaatttctcattttttagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca Alignment from GeneWise GTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAG gctacaactcatgcccacccctttcgtatgttaaatttctcattttttagGTTTCTATGTTACATTGGTGGTGAGCCGCTGGTGGAGCCAGTACGAGAACTTGCCATGGCCCGACCGCCTGATGATACAAGTATCCAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCTGCGGCGCACACTCATTCGCTATGCCATTCTGGGCCAAGTGCTTATCCTGTGCAGCATCAGCACTTCAGTCTACAAACGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGgtatgtcatgtctggagtggagaggtagcctaactggagacaaggcctca #### Blnk_ID8058_13 --> 1 - 1 Original Alignment aCCTGTCCATCAAAAGCCTGTACCCTTGCCAa ctctatattgtgctgagcttatgatgtgacactgttttccattttcacaggCCAGTCCATCAGGAGCCTGTTCCACTGTCAagtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac Alignment from CESAR aCCTGTCCATCAAAAGCCTGTACCCTTGCCAa ctctatattgtgctgagcttatgatgtgacactgttttccattttcacaggCCAGTCCATCAGGAGCCTGTTCCACTGTCAagtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac Alignment from Spaln_aa2Genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ctctatattgtgctgagcttatgatgtgacactgttttccattttcacagGCCAGTCCATCAGGAGCCTGTTCCACTGTCAAgtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac Alignment from Spaln_nt2Genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ctctatattgtgctgagcttatgatgtgacactgttttccattttcacagGCCAGTCCATCAGGAGCCTGTTCCACTGTCAAgtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac Alignment from Pairagon ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ctctatattgtgctgagcttatgatgtgacactgttttccattttcacagGCCAGTCCATCAGGAGCCTGTTCCACTGTCAAgtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac Alignment from Exonerate_protein2genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ctctatattgtgctgagcttatgatgtgacactgttttccattttcacagGCCAGTCCATCAGGAGCCTGTTCCACTGTCAAgtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac Alignment from Exonerate_coding2genome ctctatattgtgctgagcttatgatgtgacactgttttccattttcacaggccagtccatcaggagcctgttccactgtcaagtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac Alignment from GeneWise ACCTGTCCATCAAAAGCCTGTACCCTTGCCAA ctctatattgtgctgagcttatgatgtgacactgttttccattttcacagGCCAGTCCATCAGGAGCCTGTTCCACTGTCAAgtgggcatgacatgatgattgccaatcaaaggtgaaggttaggtgcagac #### Blnk_ID8065_6 --> 2 - 0 Original Alignment atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagatAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac Alignment from CESAR atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagatAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac Alignment from Spaln_aa2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagATAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac Alignment from Spaln_nt2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagATAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac Alignment from Pairagon ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagATAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac Alignment from Exonerate_protein2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagATAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac Alignment from Exonerate_coding2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagATAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac Alignment from GeneWise ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccacatggggtaacttagaatctcatgtgcttaccctcttgatagATAATCAATCCAGCCAGCGACACTCGCCTCCCTTCAGTAAGACACTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCAAGGCTGGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTCCCAAGCCCAAAGACCTTCTTGAGGATGAGgtgagcgcagcctaggaaggtccctctacagtctcctgtctttcaaggac #### Blnk_ID8066_5 --> 0 - 1 Original Alignment GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAggtaggacagtgtggacactgagattacaggaataggcagatcctgttaca Alignment from CESAR GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAggtaggacagtgtggacactgagattacaggaataggcagatcctgttaca Alignment from Spaln_aa2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaggacagtgtggacactgagattacaggaataggcagatcctgttaca Alignment from Spaln_nt2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaggacagtgtggacactgagattacaggaataggcagatcctgttaca Alignment from Pairagon GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaggacagtgtggacactgagattacaggaataggcagatcctgttaca Alignment from Exonerate_protein2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaggacagtgtggacactgagattacaggaataggcagatcctgttaca Alignment from Exonerate_coding2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaggacagtgtggacactgagattacaggaataggcagatcctgttaca Alignment from GeneWise GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG ggacccaagtaatagacaggactaggtagacacctcttcctctcctgcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGTGATGATTCCTATGAACCGCCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaggacagtgtggacactgagattacaggaataggcagatcctgttaca #### Bscl2_ID2420_3 --> 1 - 0 Original Alignment gACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcaggACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa Alignment from CESAR gACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcaggACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa Alignment from Spaln_aa2Genome GACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcagGACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa Alignment from Spaln_nt2Genome GACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcagGACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa Alignment from Pairagon GACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcagGACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa Alignment from Exonerate_protein2genome GACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcagGACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa Alignment from Exonerate_coding2genome GACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcagGACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa Alignment from GeneWise GACAGACTGTGATTCCTCCACCGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGG taggtgaggtgacctggcatatcaccagtcgtttctctgatttaccgcagGACAGACTGTGACTCCTCCACTGCCTCTCTCTGCTCTTTCCCTGTTGCCAATGTCTCACTGGCTAAGAGTGGACGTGATCGGgtaaagcatgagcatcagacaactatctgatctttgacaaacctgagaaa #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt #### Bscl2_ID2423_6 --> 0 - 2 Original Alignment TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCaggtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca Alignment from CESAR TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCaggtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca Alignment from Spaln_aa2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCAGgtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca Alignment from Spaln_nt2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCAGgtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca Alignment from Pairagon TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCAGgtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca Alignment from Exonerate_protein2genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCAGgtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca Alignment from Exonerate_coding2genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCAGgtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca Alignment from GeneWise TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG catgtgccacagactaaatgtagacctccatgtttgttctctctctacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATGGAGCCTACCTCCGGATCCATGCCCATTTCACTGGGCTCAGgtgagtaaattacagaaggacagttttcctataatgtgtcccaaatagca #### Btaf1_ID7224_7 --> 1 - 0 Original Alignment cAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagcAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta Alignment from CESAR cAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagcAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta Alignment from Spaln_aa2Genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagCAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta Alignment from Spaln_nt2Genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagCAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta Alignment from Pairagon CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagCAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta Alignment from Exonerate_protein2genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagCAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta Alignment from Exonerate_coding2genome CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagCAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta Alignment from GeneWise CAATGACAGCACTGATGGAGAGCCAGAAGAAAAGAGACGGAAAGTAGCAAATGTTGTTATTAATCAGACTGCAAGTGATTCCAAAGTCTTGATAGATAATGTTCCAGAAAGTTCTTCCTTAATTGAAGAG acttgtatagcactttcttttcatatctcccactatccacttgcccccagCAATGACAGCGCTGATGGAGAGCCAGAAGAAAAGAGACAGAAAGTAGCAAATGTTGTTATTAACCAGACAGCAAGTGACTCCCAAGTTTTGATAGACAATGTTGCAGAGAGTTCTTCCTTGATTAAAGAGgtaagttagaattttatggtttcatcatcttcaatttctagccttattta #### Btaf1_ID7225_8 --> 0 - 0 Original Alignment ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt Alignment from CESAR ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt Alignment from Spaln_aa2Genome ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt Alignment from Spaln_nt2Genome ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt Alignment from Pairagon ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt Alignment from Exonerate_protein2genome ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt Alignment from Exonerate_coding2genome ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt Alignment from GeneWise ACAAATGAATGGCCTTTGGAAAGCTTTTGTGAAGAACTTTGCAATGACCTTTTTAATCCCTCCTGGGAG aaccctgagtccaaagttctaatctgatgagctcttgtgctctctcctagATGAATGAATGGCCTTTAGAGAGTTTTTGTGAAGAACTCTGCAATGACCTTTTTAATCCCTCCTGGGAAgtgagtcatagttttgccagcaaagaaagctgtttagttggtaggagggt #### Btaf1_ID7228_11 --> 0 - 0 Original Alignment GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc Alignment from CESAR GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc Alignment from Spaln_aa2Genome GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc Alignment from Spaln_nt2Genome GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc Alignment from Pairagon GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc Alignment from Exonerate_protein2genome GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc Alignment from Exonerate_coding2genome GTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTTGTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc Alignment from GeneWise GTTTCTGATGAAGTTGTAGCGCCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAACGAAACAGGAGTTCATAAGACAGTGGATGTGCTGCTGAAATTATTGACACAAGAACAGTGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTGGCAGTTCGTCAG ggttcaatatcagctattttctacatatgtttcctatctgtaccccacagGTT------------GTAGCACCAGTTCGTGAGACTTGTGCTCAAACGTTAGGTGTGGTTTTAAAGCACATGAATGAAACAGGAGTTTATAAGACAGTGGACGTGCTGCTGAAATTATTAACACAAGAACAGAGGGAAGTTAGACATGGTGGTCTTCTGGGAATAAAATATGCTTTAGCAGTTCGTCAGgtaagtagaatagtttccgtaacaaagtttccaaggggcaatgggcgtgc #### Btaf1_ID7232_14 --> 1 - 0 Original Alignment tATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagtATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga Alignment from CESAR tATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagtATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga Alignment from Spaln_aa2Genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagTATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga Alignment from Spaln_nt2Genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagTATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga Alignment from Pairagon TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagTATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga Alignment from Exonerate_protein2genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagTATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga Alignment from Exonerate_coding2genome TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagTATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga Alignment from GeneWise TATTCAACAGTCACTCACAGTTTTAGTCCCACGTGTCTGGCCATTTTTGCATCACACTATATCTTCAGTTCGAAGAGCAGCATTGGAAACTCTCTTTACATTATTATCAACACAGGACGAG tatgcctttaaagagggaatgactaagatgttattttaactttttcccagTATTCAACAGTCCCTCACAGTTCTAGTCCCACGTGTCTGGCCATTTTTGCATCATACTATATCTTCAGTTCGAAGAGCAGCATTGGAGACTCTCTTTACATTATTATCAATACAGGATGAGgtaagtagttgacaactagtgcctcaaagattttataattgtcatagtga #### Btaf1_ID7243_22 --> 0 - 1 Original Alignment GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTg cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTggtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga Alignment from CESAR GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTg cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTggtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga Alignment from Spaln_aa2Genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTGgtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga Alignment from Spaln_nt2Genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTGgtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga Alignment from Pairagon GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTGgtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga Alignment from Exonerate_protein2genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTGgtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga Alignment from Exonerate_coding2genome GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTGgtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga Alignment from GeneWise GGTCAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAATTTGCCTTAACAACTATAGTGAAGCATTTTGGTGCTGAAATGGCAGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCTATGATTGACCTAAATAATTTTG cagattaagaatgtaacatattatacttctcttttcttcccattctccagGGTAAGAAGCCTTACCTGGTACAGCGGAGAGGAGCTGAGTTTGCCTTGACCACTATAGTGAAACATTTTGGTGCTGAAATGGCCGTGAAGTTGCCACATCTTTGGGATGCTATGGTTGGCCCATTGAAGTCCATGATTGACCTAAATAATTTTGgtgaggagtcttttgcttaaatcgatttagtgattttgatgtgtcgggga #### Btaf1_ID7245_24 --> 0 - 1 Original Alignment CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCt tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCtgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt Alignment from CESAR CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCt tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCtgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt Alignment from Spaln_aa2Genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCTgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt Alignment from Spaln_nt2Genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCTgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt Alignment from Pairagon CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCTgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt Alignment from Exonerate_protein2genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCTgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt Alignment from Exonerate_coding2genome CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCTgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt Alignment from GeneWise CTGGTACAGCACTTGCCTCATCTTTATATGTGCCTTCAGTACCCCAGCACTGCAGTGAGGCACATGGCGGCTCGTTGCATAGGTGTCATGAGTAAAATAGCTACCATGGAAACAATGAATATTTTTTTGGAGAAGGTACTTCCTTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTGCAATTGAAGCACTTGCCT tgaactttttaagagttctctagcaggtcctgtaccccttatccccacagCTGGTACAGCACTTACCTCATCTTTATATGTGCCTCCAGTATCCTAGCACTGCAGTGAGGCACATGGCAGCTCATTGCATAGGTGTAATGAGTAAAATAGCTACCATAGAAACAATGAATATTTTTCTAAAGAAGGTGCTTCCCTGGTTGGGAGCAATTGATGACAATGTCAAGCAAGAAGGTACAATTGAGGCACTTGCCTgtgagtttgagtttgtcaaatctgaagtcgtctacttattctaatttagt #### Btaf1_ID7253_32 --> 2 - 0 Original Alignment gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacaggtGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag Alignment from CESAR gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacaggtGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag Alignment from Spaln_aa2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacagGTGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag Alignment from Spaln_nt2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacagGTGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag Alignment from Pairagon GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacagGTGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag Alignment from Exonerate_protein2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacagGTGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag Alignment from Exonerate_coding2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacagGTGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag Alignment from GeneWise GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttacgagtcctcaagcaccgactgttcccccacagGTGTGCTGGCAATGGATGCTTTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATCATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtaagtaatgcggtcattgtagatgtaggtaggatgctatttgcatgaag #### Btaf1_ID7254_33 --> 0 - 0 Original Alignment GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga Alignment from CESAR GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga Alignment from Spaln_aa2Genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga Alignment from Spaln_nt2Genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga Alignment from Pairagon GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga Alignment from Exonerate_protein2genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga Alignment from Exonerate_coding2genome GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga Alignment from GeneWise GTTCAGCTTTATGAAGATTTTGCTAAGTCGCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCGACAGGTCATGTATTCCAG gtcatgagcacacacgacacctagatcatggttttactgttttcttaaagGTTCAGCTTTATGAAGATTTTGCTAAGTCTCGTGCCAAGTGTGATGTTGATGAGACCGTGTCTTCAGCTGCACTTTCAGAAGAAACTGAAAAACCAAAACTTAAAGCAACAGGTCATGTATTCCAGgtatgagtgagactaactttagggattaaagactgtacttccatgaggga #### Btaf1_ID7256_35 --> 0 - 2 Original Alignment CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCcg agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCcagtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag Alignment from CESAR CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCcg agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCcagtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag Alignment from Spaln_aa2Genome CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCCAgtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag Alignment from Spaln_nt2Genome CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCCAgtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag Alignment from Pairagon CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCCAgtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag Alignment from Exonerate_protein2genome CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCCAgtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag Alignment from Exonerate_coding2genome CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCCAgtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag Alignment from GeneWise CTGCTGTTGGACTGTGGTTTGGGGAATGGCAGTTCTACAGAGAGTGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGTCAGCTTAAAAGCATGCTTGATATAGTAGAACATGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGCAGCATACCTCCTGGACAGCGGCATTCCATTGTTTCCCG agatacctgtatgcctcagttgagtgttttattgttatttatctttgcagCTGCTGTTGGACCGTGGTTTGGGGAATGGCAGTTCTACAGAGAGCGGCACAGAGTCTGTTGTGGCACAGCACAGAATACTGATCTTCTGCCAGCTTAAAAGCATGCTTGATATAGTAGAACACGATCTGCTCAAGCCTCACCTGCCCTCTGTCACTTACTTGAGACTAGATGGTATCATACCACCTGGACAGCGGCATTCCATTGTTTCCCAgtgagtagtaagatgatacccaagttcttgattccaaaaggtgcttgaag #### Btaf1_ID7257_36 --> 1 - 0 Original Alignment gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcaggTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat Alignment from CESAR gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcaggTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat Alignment from Spaln_aa2Genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcagGTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat Alignment from Spaln_nt2Genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcagGTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat Alignment from Pairagon GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcagGTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat Alignment from Exonerate_protein2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcagGTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat Alignment from Exonerate_coding2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcagGTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat Alignment from GeneWise GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG tgcaggtgaaagtatccttgtgtggggcaaaacccaattatctctttcagGTTTAACAACAAACCCTCAATTGATGTTCTTCTACTCACAACTCATGTCGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTGAACCCAATGTGCGATTTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgtaagctatttcacactgcattaatgctggacagagaaagctccttagat #### Btrc_ID9403_2 --> 0 - 0 Original Alignment TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgtttttttcagTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc Alignment from CESAR TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgtttttttcagTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc Alignment from Spaln_aa2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgtttttttcagTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc Alignment from Spaln_nt2Genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgtttttttcagTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc Alignment from Pairagon TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgtttttttcagTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc Alignment from Exonerate_protein2genome TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgtttttttcagTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc Alignment from Exonerate_coding2genome TTTATGTGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgttttTTTCAGTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc Alignment from GeneWise TGCTCTATGCCCAGGTCTCTGTGGCTGGGCTGCTCCAGCCTGGCGGACAGCATGCCTTCGCTGCGATGCCTGTATAACCCAGGGACTGGCGCACTCACAGCTTTCCAG acccaccctttcatttacggccaatgcctgtttgttgttgtttttttcagTGCTCTATGCCTAGATCTTTGTGGTTGGGTTGCTCAAGCTTGGCAGACAGCATGCCTTCTCTGCGATGCCTGTATAACCCAGGGACAGGTGCACTTACAGCTTTTCAGgtagagtcttggtctctatggattttcagtaggtataggtataatttatc #### Btrc_ID9449_5 --> 0 - 1 Original Alignment GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAg cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAggtgagcacccatgctatactgttataattcttctacagaagttgtggagt Alignment from CESAR GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAg cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAggtgagcacccatgctatactgttataattcttctacagaagttgtggagt Alignment from Spaln_aa2Genome GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAG cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGgtgagcacccatgctatactgttataattcttctacagaagttgtggagt Alignment from Spaln_nt2Genome GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAG cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGgtgagcacccatgctatactgttataattcttctacagaagttgtggagt Alignment from Pairagon GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAG cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGgtgagcacccatgctatactgttataattcttctacagaagttgtggagt Alignment from Exonerate_protein2genome GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAG cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGgtgagcacccatgctatactgttataattcttctacagaagttgtggagt Alignment from Exonerate_coding2genome GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAG cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGgtgagcacccatgctatactgttataattcttctacagaagttgtggagt Alignment from GeneWise GCCAAACTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCGGAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCAGAGTCTGATCAAGTGGAATTTGTAGAACACCTTATATCCCAAATGTGTCACTACCAGCATGGGCACATCAACTCCTACCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAG cacccttatgctgactacagaatgggtacctcactggaacctgcttgcagACTAATCTTGCCAATGGCACTTCCAGCATGATTGTGCCCAAGCAGCAAAAACTCTCAGCAAGCTATGAGAAGGAAAAGGAGCTGTGTGTCAAGTATTTTGAGCAGTGGTCTGAGTCTGACCAGGTGGAATTTGTAGAACACCTTGTATCCCAAATGTGCCACTACCAGCACGGGCATATCAATTCCTTCCTAAAACCTATGCTGCAGAGGGATTTCATAACTGCACTGCCAGgtgagcacccatgctatactgttataattcttctacagaagttgtggagt #### Btrc_ID9453_6 --> 2 - 2 Original Alignment caCGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCtg cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagcaCGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCtggtaccgctacctttctctacctgtggcaactgggagcctctccctctcta Alignment from CESAR caCGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCtg cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagcaCGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCtggtaccgctacctttctctacctgtggcaactgggagcctctccctctcta Alignment from Spaln_aa2Genome CACGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTG cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagCACGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCTGgtaccgctacctttctctacctgtggcaactgggagcctctccctctcta Alignment from Spaln_nt2Genome CACGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTG cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagCACGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCTGgtaccgctacctttctctacctgtggcaactgggagcctctccctctcta Alignment from Pairagon CACGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTG cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagCACGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCTGgtaccgctacctttctctacctgtggcaactgggagcctctccctctcta Alignment from Exonerate_protein2genome CACGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTG cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagCACGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCTGgtaccgctacctttctctacctgtggcaactgggagcctctccctctcta Alignment from Exonerate_coding2genome CACGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTG cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagCACGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCTGgtaccgctacctttctctacctgtggcaactgggagcctctccctctcta Alignment from GeneWise CACGGGGTCTGGACCACATCGCTGAGAACATTCTGTCATACTTGGACGCCAAGTCACTGTGTGCTGCTGAGCTCGTGTGCAAGGAATGGTACCGCGTGACGTCGGACGGCATGCTGTGGAAAAAGCTCATCGAGAGGATGGTCAGGACGGACTCTCTGTGGCGAGGCCTGGCAGAGCGCAGAGGCTG cactcagcacctgcatttttcttgttttcacgcctctctttgacccatagCACGGGGTCTAGACCACATTGCTGAGAACATTTTGTCATACTTGGACGCAAAGTCACTGTGTGCTGCCGAGCTTGTTTGCAAGGAGTGGTACCGTGTCACATCGGATGGCATGCTGTGGAAAAAACTCATTGAGAGAATGGGCAGGACAGACTCTCTGTGGCAAGGCCTGGCAGAGCGCAGGGGCTGgtaccgctacctttctctacctgtggcaactgggagcctctccctctcta #### Btrc_ID9458_8 --> 0 - 0 Original Alignment ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from CESAR ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Spaln_aa2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Spaln_nt2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Pairagon ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Exonerate_protein2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from Exonerate_coding2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc Alignment from GeneWise ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG tgagtagttagtattgtctttattgggtcactgtgttctgttttccacagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtgagtgggaccacttcagtggagaagcaaacatccatagagcagtgtgc #### Btrc_ID9464_13 --> 1 - 0 Original Alignment gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttaggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg Alignment from CESAR gAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttaggAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg Alignment from Spaln_aa2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg Alignment from Spaln_nt2Genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg Alignment from Pairagon GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg Alignment from Exonerate_protein2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg Alignment from Exonerate_coding2genome GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg Alignment from GeneWise GAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTG ttcttgttgctccttttcaccaggaaataattctttttcttttgttttagGAAAATTAAAGTGTGGGATCTTATGGCTGCTTTGGACCCGCGTGCTCCAGCAGGGACTCTCTGTCTGCGGACACTTGTGgtaagccccttgttaatagaggtgtaacaagaaggtcagcaaaatgaatg #### C030046E11Rik_ID6290_4 --> 1 - 2 Original Alignment aGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGag ctatagatgagcatattaaatatcattactttctccttctctacttgtagaGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGaggtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta Alignment from CESAR aGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGag ctatagatgagcatattaaatatcattactttctccttctctacttgtagaGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGaggtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta Alignment from Spaln_aa2Genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctatagatgagcatattaaatatcattactttctccttctctacttgtagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta Alignment from Spaln_nt2Genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctatagatgagcatattaaatatcattactttctccttctctacttgtagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta Alignment from Pairagon AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctatagatgagcatattaaatatcattactttctccttctctacttgtagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta Alignment from Exonerate_protein2genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctatagatgagcatattaaatatcattactttctccttctctacttgtagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta Alignment from Exonerate_coding2genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctatagatgagcatattaaatatcattactttctccttctctacttgtagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta Alignment from GeneWise AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctatagatgagcatattaaatatcattactttctccttctctacttgtagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgggtcttgctggtaggagtaaggtatcctgaacagggaacaccatgta #### C030046E11Rik_ID6299_13 --> 0 - 0 Original Alignment ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc Alignment from CESAR ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc Alignment from Spaln_aa2Genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc Alignment from Spaln_nt2Genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc Alignment from Pairagon ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc Alignment from Exonerate_protein2genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc Alignment from Exonerate_coding2genome ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc Alignment from GeneWise ATTTCCAGCACCTATCTAGAAAGCAATTGGCCTATACGG cctactaatgtgtgatgtgggcatagttcccactgtgtttgcactttcagATCTCTAGCACTTACCTACAAAGCAATTGGCCTATACGAgtgtgtatgcctcccattaatattgtgtggttctcctagggggggagtgc #### C030046E11Rik_ID6301_15 --> 0 - 0 Original Alignment GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca Alignment from CESAR GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca Alignment from Spaln_aa2Genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca Alignment from Spaln_nt2Genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca Alignment from Pairagon GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca Alignment from Exonerate_protein2genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca Alignment from Exonerate_coding2genome GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca Alignment from GeneWise GAGCAAAATATGATTGTGACTGGTGGCTTAGCCTGGTGGGATGACTTTATGGTCCTTGCGTGTTACAACTTAAGTGACCGTCAAGAAGAG tgtctaaaaatatggtatccattgcaagtttttgcccgctccctgtttagGAGCAAAAGATGATTGTGACTGGTGGCCTAGTCTGGTGGGATGACTTTATGGTCCTTGCATGTTACAACTTAAGTGACCGTCAAGAAGAGgtgagttcctattctctttgaaagaacagtcaatacgccattaaatctca #### C030046E11Rik_ID6304_18 --> 0 - 0 Original Alignment GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt Alignment from CESAR GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt Alignment from Spaln_aa2Genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt Alignment from Spaln_nt2Genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt Alignment from Pairagon GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt Alignment from Exonerate_protein2genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt Alignment from Exonerate_coding2genome GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt Alignment from GeneWise GCTCGTGATGCAGAGAGCATAATGCTGAACCTTGCGGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCGCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTT tgttgtcctcttattttcttgtttttccattattttcaaactcttctcagGCTTGTGATGCAGAAAGCATAATGCTGAATCTTGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCTGGCCCCCAGATCCGGGAGAAGGACAGCCACCCTAACCAAAGGAAGCTTgtgagtacggatagacagcactatttcttaggggttgcaaggacagtggt #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTagtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTagtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Spaln_aa2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Pairagon AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Exonerate_protein2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from Exonerate_coding2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt Alignment from GeneWise CTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA agccaggtgagcattctcaatggtggaacgcctgtccccatactctacagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGACCGGGATGGCTACATCGGGTACCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGGTTAgtaagtggttaccttatggcccagtgctcatagcccttaggcagatgtgt #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGGTAACTTTCCCCCTTCTTCTTCCCACatggcagcatttgtgaatggtgtt #### Cabp4_ID341_3 --> 2 - 1 Original Alignment agCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCa atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagagCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCagtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct Alignment from CESAR agCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCa atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagagCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCagtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct Alignment from Spaln_aa2Genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagAGCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCAgtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct Alignment from Spaln_nt2Genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagAGCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCAgtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct Alignment from Pairagon AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagAGCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCAgtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct Alignment from Exonerate_protein2genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagAGCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCAgtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct Alignment from Exonerate_coding2genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagAGCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCAgtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct Alignment from GeneWise AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagatgcaaggtaactttaggttggcagactgtatcacttctctgtagAGCTCCAGGCTGCCTTTGAAGAGTCTGAGACTGACCAGGATGGCTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCCATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGCAgtgagtgtgagtgagcgatcatcctttaatagtaggccttattagtggct #### Capn1_ID1360_16 --> 2 - 0 Original Alignment acAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagacAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc Alignment from CESAR acAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagacAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc Alignment from Spaln_aa2Genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagACAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc Alignment from Spaln_nt2Genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagACAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc Alignment from Pairagon ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagACAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc Alignment from Exonerate_protein2genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagACAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc Alignment from Exonerate_coding2genome ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagACAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc Alignment from GeneWise ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT ttttgttgttagttcaaaagccccttaattcttttcaaatttctctacagACAAAGACCTGCGCACAAATGGCTTCAGCCTGGAGTTGTGCCGCAGCACAGTAAACCTCATGGATgtaaaatttcacctataccggtgtgtgatagaactgagtcagaccaaggc #### Capn1_ID1364_12 --> 0 - 2 Original Alignment CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCca agacatggtggattactacagccctttaagacatcttttgcattttgcagCTGGCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATGCACAGACAGAACATTTTATCAACCTTCGGGAAGTCAGTAACCATATCCGCTTGCCACCTGGGGAGTACATAGTCGTGCCCTCAGCCTTTGAGCCTAACAAGGAAGGTGACTTCCTACTTCGTTTCTTCTCAAGGAAAAAGGCTGGGACCcagtagttcctttgccacctccctacatccctaggctgctttgactcctgtg Alignment from CESAR CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCca agacatggtggattactacagccctttaagacatcttttgcattttgcagCTGGCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATGCACAGACAGAACATTTTATCAACCTTCGGGAAGTCAGTAACCATATCCGCTTGCCACCTGGGGAGTACATAGTCGTGCCCTCAGCCTTTGAGCCTAACAAGGAAGGTGACTTCCTACTTCGTTTCTTCTCAAGGAAAAAGGCTGGGACCcagtagttcctttgccacctccctacatccctaggctgctttgactctgtgt Alignment from Spaln_aa2Genome CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGG agacatggtggattactacagccctttaagacatcttttgcattttgcagCTGGCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATgcacagacagaacattttatcaaccttcgggaagtcagtaaccatatccgcttgccacctggggagtacatagtcgtgccctcagcctttgagcctaacaaggaaggtgacttcctacttcgtttcttctcaaggaaaaaggctgggacccagtagttcctttgccacctccctacatccctaggctgctttgactcctgtg Alignment from Spaln_nt2Genome CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCG- agacatggtggattactacagccctttaagacatcttttgcattttgcagCTGGCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATgcacagacagaacattttatcaaccttcgggaagtcagtaaccatatccgcttgccacctggggagtacatagtcgtgccctcagcctttgagcctaacaaggaaggtgacttcctacttcgtttcttctcaaggaaaaaggctgggacccagtagttcctttgccacctccctacatccctaggctgctttgactcctgtg Alignment from Pairagon CTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacatggtggattactacagccctttaagacatcttttgcattttgcagCTGGCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATGCACAGACAGAACATTTTATCAACCTTCGGGAAGTCAGTAACCATATCCGCTTGCCACCTGGGGAGTACATAGTCGTGCCCTCAGCCTTTGAGCCTAACAAGGAAGGTGACTTCCTACTTCGTTTCTTCTCAAGGAAAAAGGCTGGGACCCAgtagttcctttgccacctccctacatccctaggctgctttgactcctgtg Alignment from Exonerate_protein2genome GAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacatggtggattactacagccctttaagacatcttttgcattttgCAGCTGGCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATGCACAGACAGAACATTTTATCAACCTTCGGGAAGTCAGTAACCATATCCGCTTGCCACCTGGGGAGTACATAGTCGTGCCCTCAGCCTTTGAGCCTAACAAGGAAGGTGACTTCCTACTTCGTTTCTTCTCAAGGAAAAAGGCTGGGACCCAgtagttcctttgccacctccctacatccctaggctgctttgactcctgtg Alignment from Exonerate_coding2genome GAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCA agacatggtggattactacagccctttaagacatcttttgcattttgCAGCTGGCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATGCACAGACAGAACATTTTATCAACCTTCGGGAAGTCAGTAACCATATCCGCTTGCCACCTGGGGAGTACATAGTCGTGCCCTCAGCCTTTGAGCCTAACAAGGAAGGTGACTTCCTACTTCGTTTCTTCTCAAGGAAAAAGGCTGGGACCCAgtagttcctttgccacctccctacatccctaggctgctttgactcctgtg Alignment from GeneWise GTCCCTCGGGAGCTGGCGGGTCAGCCTGTGCACTTGAAGCGTGATTTCTTCCTGGCCAACGCTTCTCGGGCGCAGTCAGAGCACTTCATCAACCTTCGGGAAGTCAGCAACCGTATCCGCCTGCCGCCCGGGGAGTACATAGTGGTGCCCTCCACCTTCGAGCCCAACAAAGAAGGCGACTTCCTGCTGCGCTTCTTCTCAGAGAAGAAGGCTGGGACCCAG-- agacatggtggattactacagccctttaagacatcttttgcattttgcagCTG------------GCAGGTCAGCCTGTGCATTTGAAGCGTGACTTGTTCCTGGCTAACGCTTCTCATGCACAGACAGAACATTTTATCAACCTTCGGGAAGTCAGTAACCATATCCGCTTGCCACCTGGGGAGTACATAGTCGTGCCCTCAGCCTTTGAGCCTAACAAGGAAGGTGACTTCCTACTTCGTTTCTTCTCAAGGAAAAAGGCTGGGACCCAGTAgttcctttgccacctccctacatccctaggctgctttgactcctgtg #### Capn1_ID1366_10 --> 2 - 0 Original Alignment ctACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagcaACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaagccagatgtgggacacccattcctgcaacaatcagaatccattgag Alignment from CESAR ctACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagcaACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaagccagatgtgggacacccattcctgcaacaatcagaatccattgag Alignment from Spaln_aa2Genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaagccagatgtgggacacccattcctgcaacaatcagaatccattgag Alignment from Spaln_nt2Genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaagccagatgtgggacacccattcctgcaacaatcagaatccattgag Alignment from Pairagon CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaagccagatgtgggacacccattcctgcaacaatcagaatccattgag Alignment from Exonerate_protein2genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAGGTCCCTCGGGA ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGGTAAGCCAGATgtgggacacccattcctgcaacaatcagaatccattgag Alignment from Exonerate_coding2genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAGGTCCCTCGGGA ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGGTAAGCCAGATgtgggacacccattcctgcaacaatcagaatccattgag Alignment from GeneWise CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAGGTCCCTCGG-- ttttttgtgtgtcaaatccgtgacttgtgagcagtgatcttgtcttccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAGGAGGTGGATGATGCAGATGATTATGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCGTCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGGTAAGCCAGATgtgggacacccattcctgcaacaatcagaatccattgag #### Carns1_ID384_8 --> 2 - 0 Original Alignment gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctaggtGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac Alignment from CESAR gcGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctaggtGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac Alignment from Spaln_aa2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctagGTGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac Alignment from Spaln_nt2Genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctagGTGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac Alignment from Pairagon GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctagGTGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac Alignment from Exonerate_protein2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctagGTGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac Alignment from Exonerate_coding2genome GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctagGTGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac Alignment from GeneWise GCGTGGACTTAGTTCTCACGGTGATCGGACGCACGCTGACGCCCGTGGTCCTTAAGCTGAACAGTGGCCTGTGCCTAGAGGCCTGCGGCGCGCTCGAGGGGCTGTGGGCCGTGCCACGCCTAAGACGCTCAGCTGAGGAGGCAGCGGCAGCGCCGCTGGTGGAGACTATGCTGCGGCGCTCAGGGCGCCACCTCATGGACGGCAAGCAGCTGCTGGTGATCGGCGCCGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGGGACTACGGACTGACG tttacttggcggctgggtgtttgaagctttcttctgccccctttccctagGTGTGGATTTAGTTCTTGCAGTGATTGGACGTACACTGACGCCTGTGGTCCTTAAGCTGAATTGTGGTCTGTGCCTAGAGGCCTGTGGTGCACTCGAAGGGCGATGGGCTGTGCCACGCTTACGACGATCAGCTGAGGAGGCGGCTGCAGCACCATTGGTTGAGACCATGCTGAGACATTCAGGGCGCCACCTAATGGATGGCAAGCAGCTGCTGGTGATTGGGACTGAGAGTGTTGGCAAGAAGTTTTTGTGGGAAGTGGCACGAGACTACAGACTCACTgtgagagaggggttggaataagatgggatcagtcccttagatgaacccac #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtaaggtgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtaaggtgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtaaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtaaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Pairagon CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtaaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtaaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtaaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtaaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtacttcttttttttttttttttacaggaGGTCCTCCACCTGG Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGG Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtacttcttttttttttttttttacagGAGGTCCTCCACCTGG Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCC----------------------------------TTACCAGGCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGGTAAGGTGTACTTCTTTTTTTTTTTTTTTTACAGGAGGTCCTCCACCTGG Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtacttcttttttttttttttttacagGAGGTCCTCCACCTGG Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtacttcttttttttttttttttacagGAGGTCCTCCACCTGG Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtacttcttttttttttttttttacagGAGGTCCTCCACCTGG Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtacatgaggtagtggtggtgggtaaagcttctttcacttgactttgtagGTGGCAGTGAGGCTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACACCTACAGGTAAAACCATCCACAGTGGTGAACACGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGACGAGAGTGTCCTTGTGGAGCCAATCTGTCCTCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtacttcttttttttttttttttacagGAGGTCCTCCACCTGG #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG acaaatatagataatgaggacagggtggtgtttgtttgtttgtttggcagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTAGGTTCTCTCAGCACCTTCCTATCGCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaaaattgtgctttaataccctaccttctcctacaaaatgggaagcccg #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagacTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagacTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggtttgacacccatcctactctgtccttgcatttcctcagACTTTTTCATTATGGTCATGGCA---CTGGGCTTTGTACTACTGCAGATCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCACATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgaggagcactaccccactcatgttcttggagagctctcaacagtaaaa #### Catsper1_ID933_10 --> 2 - 2 Original Alignment acGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGaa tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagatGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGaagtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca Alignment from CESAR acGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGaa tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagatGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGaagtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca Alignment from Spaln_aa2Genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagATGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca Alignment from Spaln_nt2Genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagATGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca Alignment from Pairagon ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagATGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca Alignment from Exonerate_protein2genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagATGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca Alignment from Exonerate_coding2genome ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagATGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca Alignment from GeneWise ACGCCAATGCACAAATGACCGAGGAGGCCTTGAAGATGCAGCTTATTGAGGGAATGTTTGGCAACATGACAGTGAA tttgtcaagtcatcttgtaaacagtaagaatggcttcactgttgttctagATGCCAATGCACGAATGACAGAGGAGGCCTTGAAGATGCAACTTATTGAGGGAATGTTTGGCAATATGACAGTGAAgtactgagtagaaatgtgggtagctccagctagtgcttgggagtcaggca #### Cbwd1_ID5353_14 --> 0 - 1 Original Alignment GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTggtgagtaacacttatgtaccactggattgccgggtctgacaatctcaatt Alignment from CESAR GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTg atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTggtgagtaacacttatgtaccactggattgccgggtctgacaatctcaatt Alignment from Spaln_aa2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTGgtgagtaacacttatgtaccactggattgccgggtctgacaatctcaatt Alignment from Spaln_nt2Genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTGgtgagtaacacttatgtaccactggattgccgggtctgacaatctcaatt Alignment from Pairagon GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTGgtgagtaacacttatgtaccactggattgccgggtctgacaatctcaatt Alignment from Exonerate_protein2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTGgtgagtaacacttatgtaccactggattgccgggtctgacaatctcaatt Alignment from Exonerate_coding2genome GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTG atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTGgtgagtaacacttatgtaccactggattgccgggtctgacaatctcaatt Alignment from GeneWise GGACTGGTGTCTATCAAAGACAAACCACAGCAAATGATTGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGAGCGTGTCAGCTGGTCTTCATTGGTAG atgtggccctaagttgaggtagaactgattcccccatttctgcatacaagGGACTAGTGTCTATCAAAGTCAAACCACATCAAATGATTGTGCAAGGTATCCATGATCTGTATGACTTGGAAGAAAGCCTTGTGAACTGGAAGGATGATGCAGAAAGAGCATGTCAGCTAGTGTTCATTGGTGAgtaacacttatgtaccactggattgccgggtctgacaatctcaatt #### Cbwd1_ID5355_12 --> 0 - 0 Original Alignment AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt Alignment from CESAR AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt Alignment from Spaln_aa2Genome aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagagtattgttacagtcacatttgaagtaccaggaagtgcaaaggaagaatgtctaaatgtatttatccaggtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt Alignment from Spaln_nt2Genome aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagagtattgttacagtcacatttgaagtaccaggaagtgcaaaggaagaatgtctaaatgtatttatccaggtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt Alignment from Pairagon AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt Alignment from Exonerate_protein2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt Alignment from Exonerate_coding2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt Alignment from GeneWise AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG aatctgtacatgactgtagaacatttcttgctgtttgaaatgtttttcagAGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGgtcagtacaaacttctatttattcctactaatcggctgaagcccgtagtt #### Cbwd1_ID5369_2 --> 2 - 1 Original Alignment gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg tctatgtttaacctgtatagcctctgtatctatttcatttttccttccaggtGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta Alignment from CESAR gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg tctatgtttaacctgtatagcctctgtatctatttcatttttccttccaggtGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta Alignment from Spaln_aa2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tctatgtttaacctgtatagcctctgtatctatttcatttttccttccagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta Alignment from Spaln_nt2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tctatgtttaacctgtatagcctctgtatctatttcatttttccttccagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta Alignment from Pairagon GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tctatgtttaacctgtatagcctctgtatctatttcatttttccttccagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta Alignment from Exonerate_protein2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tctatgtttaacctgtatagcctctgtatctatttcatttttccttccagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta Alignment from Exonerate_coding2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tctatgtttaacctgtatagcctctgtatctatttcatttttccttccagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta Alignment from GeneWise GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG tctatgtttaacctgtatagcctctgtatctatttcatttttccttccagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtaagcaaagggtagagctcaatgattgtaagcttgaggaagttttggta #### Ccdc147_ID10401_3 --> 0 - 2 Original Alignment GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCaa ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCTT---GAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCaagtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc Alignment from CESAR GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCaa ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCTT---GAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCaagtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc Alignment from Spaln_aa2Genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCTT---GAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCAAgtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc Alignment from Spaln_nt2Genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCT---TGAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCAAgtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc Alignment from Pairagon GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCT---TGAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCAAgtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc Alignment from Exonerate_protein2genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCTT---GAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCAAgtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc Alignment from Exonerate_coding2genome GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCTT---GAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCAAgtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc Alignment from GeneWise GAAATCGAGAAAGCCTGGAAGATGGTGGACTCGGCATATGACAAGGAGCAAAAGGCCAAGGAGACAATTCTTGCCCTGAAGGAGGAAATAGTGAACCTGACCAAACTAGTTGAGCAGGGGTCTGGACTGTCAATGGATCAGGACAGCAA ttcagcccaagggcctgtttctattttatttcttctctcatctccatcagGAAATTGAGAAAGCCTGGAAGATGGTGGACTCAGCATATGAAAAGGAGCAAAAGGCCAAGGAGACAATACTTACCCTGAAGGAGGAAATTGTGAATCTT---GAACTTGTTGAGCATGGGTCTGGACTATCAATGGATCAAGAGAGCAAgtaagtgaaaacatagagagagtaaccttcatctgatcttacagagcacc #### Ccdc147_ID10406_6 --> 0 - 0 Original Alignment ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg Alignment from CESAR ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg Alignment from Spaln_aa2Genome ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg Alignment from Spaln_nt2Genome ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg Alignment from Pairagon ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg Alignment from Exonerate_protein2genome ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg Alignment from Exonerate_coding2genome ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg Alignment from GeneWise ATACTGAACGAGAGAGCTGCGAAGGAGGTGGAACAGTTTCAGATGCGGAACGCGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCGCAGGAAAACCAGCAGAAGGCCCTGGAGCTCAAA gtatctagattgagagtggtattactcgacagtcctgccttaccttacagATACTGAATGAGAGGACTGCAAAGGAGGTGGAACAGTTTCAGATGCGGAATGTGAAACTGCAGCAAGAGAATGATCAGCACACTCTGACTTGTGAGCAGCTGTCACAAGAAAACCAGCAGAAGGCCCTGGAGCTCAAAgtgagtagtgcccaggtctgactcctaactattctcggtacctgtagatg #### Ccdc147_ID10418_11 --> 0 - 0 Original Alignment GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa Alignment from CESAR GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa Alignment from Spaln_aa2Genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa Alignment from Spaln_nt2Genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa Alignment from Pairagon GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa Alignment from Exonerate_protein2genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa Alignment from Exonerate_coding2genome GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa Alignment from GeneWise GATGAAATCACAGAAATGAAGAGGAAGTTAAAGATCATGACGCATCAAGTGGACCAGCTGAAGGAAGAAATCTCTGCCAAGGAAGCCGCGCTCGTGAAGCTGCATCTGGAACAGCAGCGCATTGAGAAGGAGAAAGAAACATTGAAG tgagtgcccaggcagagggcttgcccagccaccctcgtttttctttccagGATGAAATCACAGAAATGAGGAGAAAGTTGAAGATCATGACGCATCAAGTGGACCAACTGAAGGAGGAACTCTCTGCCAAGGAAGCTGCCCTGGTTAAGCTGCATCTGAAACAGCAGCGAATTGAGAAGGAGAAAGAAACATTGAAGgtgagagctctacttaaagcagtggccgtaccgtaggcgatcgcttggaa #### Ccdc172_ID12718_2 --> 2 - 0 Original Alignment taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct Alignment from CESAR taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct Alignment from Spaln_aa2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct Alignment from Spaln_nt2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct Alignment from Pairagon TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct Alignment from Exonerate_protein2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct Alignment from Exonerate_coding2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct Alignment from GeneWise TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG actgctaagatgctgttttgaggtagcttccctttcatatgtcctcacagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaggtatgctagtactgtaacttgaatgtttggggactacttactgtct #### Ccdc172_ID12722_3 --> 0 - 0 Original Alignment GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc Alignment from CESAR GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc Alignment from Spaln_aa2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc Alignment from Spaln_nt2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc Alignment from Pairagon GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc Alignment from Exonerate_protein2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc Alignment from Exonerate_coding2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc Alignment from GeneWise GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tttaattagctaagcccacagatttgtatgtcattactatctttttcaagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACCCATGAGAACACTTTGGAGAGACAGCTAAGCGAGATCATTAGTGAGCGGGACACGCTACTCCAAGGCTGTgtaacactctggccaccaatagattgtatctacagccactaaaaagcatc #### Ccdc172_ID12729_7 --> 1 - 0 Original Alignment gCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcaggCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat Alignment from CESAR gCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcaggCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat Alignment from Spaln_aa2Genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcagGCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat Alignment from Spaln_nt2Genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcagGCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat Alignment from Pairagon GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcagGCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat Alignment from Exonerate_protein2genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcagGCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat Alignment from Exonerate_coding2genome GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcagGCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat Alignment from GeneWise GCTTAAAAGGGAGTTAGATCTGTATAAAGCAGAAGACATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTCCTGGAGTTG catacagagggtgaagtttgtattcttgttcacttccctctctctttcagGCTTAAAAGGGAGTTAGGTCTGTATAAAGCAGAAGATATGGAAAGTGTCTACAGAGCTCTCCAAGCAGAAGTAGACCTTGTAGAGTTGgtgaggcccgactgctcttttcgtgaatcttcagcagtttttggtgctat #### Ccdc88b_ID1823_26 --> 2 - 1 Original Alignment gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctaggaTCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGggtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct Alignment from CESAR gaTCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGg aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctaggaTCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGggtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct Alignment from Spaln_aa2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctagGATCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct Alignment from Spaln_nt2Genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctagGATCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct Alignment from Pairagon GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctagGATCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct Alignment from Exonerate_protein2genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctagGATCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct Alignment from Exonerate_coding2genome GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctagGATCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct Alignment from GeneWise GATCTGGTGTGGAATGGGATGGCTCCATTAAGACCCTCTCGGAGCATGAAGCAGATGACACTCGAGAGG aaccaccaccccaaggcagtgaggcccacaacactctttttcatgtctagGATCTGGTGTGGAGTGGGATGGCTCAATTAAACCTCTCTCAGAGCATGAAGCAGATGACACTCGAGAGGgtaggaccaggttactagtaccaccgctggggttcagagcaagtcctgct #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcaggAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcaggAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtaagtgtacttagggtcagccaaacctcctttccatgacaggGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTaagtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtcagtgtacttagggtcagccaaacctcctttccatgacaggGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTaagtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc Alignment from GeneWise GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagtgtacttagggtcagccaaacctcctttccatgacagGGACCAACTCAATGGCTTGCACCAGCAGAAACAGAAGCTGGTTGAG---ATCATGGACCAGTACCGTGTACTAGAGCCTGGGCCCCTACCCCATACTAAgtacggtagtaccttgcggatcctgttagtagtttgccctgtcgtacccc #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTT---GCTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTG---CTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG--CTTG----CTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gaaggcagaaatgcttcaactacttgtttgtccatctcttgtgaccacagCTGCATCAGTGCCCGGTG---CTTGCTGGGGCACGGCGGGCTGGCCCTTGGACTGTGGAGACACAGAATGGGCGGCTCATTGTAGTGGAGCAAAATgtacacgaaaagatgggggcttacccaaggggtaacagggctcacaactt #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAggtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAggtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagcagcacctattatggatatcttcccaattttacctctctcacagGAGGAGCTACAGCTTCTAATCCTATCAGCACCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtgagtcttcttacttttttctaccattgctctctgttctatatccttat #### Ccnj_ID8042_3 --> 2 - 1 Original Alignment gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccaggcAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat Alignment from CESAR gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccaggcAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat Alignment from Spaln_aa2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccagGCAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat Alignment from Spaln_nt2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccagGCAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat Alignment from Pairagon GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccagGCAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat Alignment from Exonerate_protein2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccagGCAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat Alignment from Exonerate_coding2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccagGCAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat Alignment from GeneWise GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG aatgtgtgtagggcagtacctgccatagcttaactttattttctcaccagGCAAATTTGAAGAGAAGGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtgatctgtctccccttgggtcatgacacatggcaaattaagtgtttcat #### Ccs_ID664_4 --> 2 - 2 Original Alignment agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag actccatgaaattttaatgacactacatctatcaatttcctttctttcagaaAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATaggtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt Alignment from CESAR agAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATag actccatgaaattttaatgacactacatctatcaatttcctttctttcagaaAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATaggtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt Alignment from Spaln_aa2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG actccatgaaattttaatgacactacatctatcaatttcctttctttcagAAAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATAGgtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt Alignment from Spaln_nt2Genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG actccatgaaattttaatgacactacatctatcaatttcctttctttcagAAAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGA---TGGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATAGgtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt Alignment from Pairagon AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG actccatgaaattttaatgacactacatctatcaatttcctttctttcagAAAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGA---TGGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATAGgtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt Alignment from Exonerate_protein2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG actccatgaaattttaatgacactacatctatcaatttcctttctttcagAAAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATAGgtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt Alignment from Exonerate_coding2genome AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG actccatgaaattttaatgacactacatctatcaatttcctttctttcagAAAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATAGgtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt Alignment from GeneWise AGAATCTGGGAGCAGCAGTGGCCATTCTGGAGGGCTGTGGCTCCATACAGGGGGTGGTCCGCTTCCTACAGCTATCCTCTGAACTCTGCTTGATTGAGGGAACCATCGACGGCCTAGAGCCTGGGCTGCATGGACTCCATGTGCATCAGTATGGGGACCTTACGAGGGACTGCAATAG actccatgaaattttaatgacactacatctatcaatttcctttctttcagAAAATCTTGGGGCAACTGTGGCCATTCTGGAAGGTTATGGCTCCATACAGGGATTGGTCCGCTTCCTACAACTATCCTCTGAACTCTGCTTGATTGAGGGAACAATTGATGGCCTAGAT---GGACTGCATGGACTACATGTGCACCACTATGGGGACCTTTCACGTGACTGCAATAGgtgagtcatctataagaacttatgtggacacttgggcttcacccttcctt #### Cd274_ID6273_4 --> 2 - 1 Original Alignment aaCTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAg tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagaaCTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAggtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact Alignment from CESAR aaCTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAg tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagaaCTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAggtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact Alignment from Spaln_aa2Genome AACTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAG tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagAACTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAGgtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact Alignment from Spaln_nt2Genome AACTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAG tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagAACTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAGgtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact Alignment from Pairagon AACTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAG tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagAACTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAGgtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact Alignment from Exonerate_protein2genome AACTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAG tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagAACTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAGgtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact Alignment from Exonerate_coding2genome AACTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAG tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagAACTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAGgtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact Alignment from GeneWise AACTGCCTGCAACACATCCTCCACAGAACAGGACTCACTGGGTGCTTCTGGGATCCATCCTGTTGTTCCTCATTGTAGTGTCCACGGTCCTCCTCTTCTTGAGAAAACAAG tggctctgcaaagcctaactttttgtcaatgagtgccttgtgtatttcagAACTGCCTGCAACACACCCTCCGCAGAACAGGACTCACTGGGTGCTTCTGGGGTCCATCCTGTTGTTCCTTATTGTACTGTCCACAGTTCTCCTCTTTTTGAGAAAGCAAGgtgattcgaccattgctgtcagggtcaagagctcatagcaagaaatgact #### Cd5_ID2991_7 --> 2 - 1 Original Alignment gcCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAt ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcaggtCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAAtgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca Alignment from CESAR gcCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAt ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcaggtCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAAtgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca Alignment from Spaln_aa2Genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcagGTCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAATgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca Alignment from Spaln_nt2Genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcagGTCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAATgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca Alignment from Pairagon GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcagGTCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAATgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca Alignment from Exonerate_protein2genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcagGTCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAATgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca Alignment from Exonerate_coding2genome GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcagGTCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAATgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca Alignment from GeneWise GCCAAGACCCAAACCCAGCGGGCCTGGCCCCAGGCACTGTGGCAAGCATCATCCTGACCCTTGTACTCCTGGTGGTGCTGCTGGCCATGTGTGGTCCTCTGGTCTACAAGAAGCTGGTGAAGAAAT ttgctctcatcatcggggcaggatctgatgtcttgtgctctctgtttcagGTCAAGACCCAAACCCCGCAGGCCTGTCCCCAGGTACTGTGGCAATCATCATCCTAGCCCTTGTAATCTTGGTGGTGCTTTTGGCCATGTGCGGACCTCTGGTCTACAGGAAGCTGGTGAAAAAATgtgagtctaggctttccccagttcccacagcattaaacaaagccttcaca #### Cd5_ID2993_5 --> 2 - 1 Original Alignment ctCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGGGGTGGC---ACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTg aacaggtcacattgaacataccacactcttccatctttttataaaaacagctCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTggtgagtagactcggaccacactccatcagggctatctatttgtgaggaag Alignment from CESAR ctCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGGGGTGGC---ACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTg aacaggtcacattgaacataccacactcttccatctttttataaaaacagctCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTggtgagtagactcggaccacactccatcagggctatctatttgtgaggaag Alignment from Spaln_aa2Genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgaacataccacactcttccatctttttataaaaacagCTCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagactcggaccacactccatcagggctatctatttgtgaggaag Alignment from Spaln_nt2Genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgaacataccacactcttccatctttttataaaaacagCTCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagactcggaccacactccatcagggctatctatttgtgaggaag Alignment from Pairagon CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgaacataccacactcttccatctttttataaaaacagCTCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagactcggaccacactccatcagggctatctatttgtgaggaag Alignment from Exonerate_protein2genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgaacataccacactcttccatctttttataaaaacagCTCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagactcggaccacactccatcagggctatctatttgtgaggaag Alignment from Exonerate_coding2genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgaacataccacactcttccatctttttataaaaacagCTCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagactcggaccacactccatcagggctatctatttgtgaggaag Alignment from GeneWise CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGGGGTGGC---ACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgaacataccacactcttccatctttttataaaaacagCTCCTCCCAGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGTGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCTCATTCTTGACACATCTGTCTGGGACAGAGGCAGCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTGTCTCACTACAGCAGTGCTTTCAGAAAACAACAGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagactcggaccacactccatcagggctatctatttgtgaggaag #### Cd5_ID2996_2 --> 2 - 1 Original Alignment cgGCTTTCTGCCTCGGACAGTCTGGAAGGGGTGGCCTAg agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagcaGCTTTCTGC---CGAAAGTCTGGAAGGGGAGGTCTAggtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct Alignment from CESAR cgGCTTTCTGCCTCGGACAGTCTGGAAGGGGTGGCCTAg agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagcaGCTTTCTGC---CGAAAGTCTGGAAGGGGAGGTCTAggtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct Alignment from Spaln_aa2Genome CGGCTTTCTGCCTCGGACAGTCTGGAAGGGGTGGCCTAG agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagCAGCTTTCTGC---CGAAAGTCTGGAAGGGGAGGTCTAGgtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct Alignment from Spaln_nt2Genome CGGCTTTCTGCCTCGGACAGTCTGGAAGGGGTGGCCTAG agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagCAGCTTTCTGCC---GAAAGTCTGGAAGGGGAGGTCTAGgtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct Alignment from Pairagon CGGCTTTCTGCCTCGGACAGTCTGGAAGGGGTGGCCTAG agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagCAGCTTTCTGCC---GAAAGTCTGGAAGGGGAGGTCTAGgtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct Alignment from Exonerate_protein2genome CGGCTTTCTGCCTCGGACAGTCTGGAAGGGGTGGCCTAG agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagCAGCTTTCTGC---CGAAAGTCTGGAAGGGGAGGTCTAGgtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct Alignment from Exonerate_coding2genome agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagcagctttctgccgaaagtctggaaggggaggtctaggtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct Alignment from GeneWise agagtgggttggtgagccagctgggcagtcacattgaactctgcttccagcagctttctgccgaaagtctggaaggggaggtctaggtatgaaaaaacaactcaatggaaaaatttagcatccgaagctgtgtcct #### Cd6_ID3016_8 --> 2 - 1 Original Alignment ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg ggaaaaactgatagtggctattcaaaaccacctctatctatttattccagctGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAggtaaaaactcacacaacgcatggggaaaacagggagagtggagggctatc Alignment from CESAR ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg ggaaaaactgatagtggctattcaaaaccacctctatctatttattccagctGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAggtaaaaactcacacaacgcatggggaaaacagggagagtggagggctatc Alignment from Spaln_aa2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG ggaaaaactgatagtggctattcaaaaccacctctatctatttattccagCTGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaaaactcacacaacgcatggggaaaacagggagagtggagggctatc Alignment from Spaln_nt2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG ggaaaaactgatagtggctattcaaaaccacctctatctatttattccagCTGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaaaactcacacaacgcatggggaaaacagggagagtggagggctatc Alignment from Pairagon CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG ggaaaaactgatagtggctattcaaaaccacctctatctatttattccagCTGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaaaactcacacaacgcatggggaaaacagggagagtggagggctatc Alignment from Exonerate_protein2genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG ggaaaaactgatagtggctattcaaaaccacctctatctatttattccagCTGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaaaactcacacaacgcatggggaaaacagggagagtggagggctatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG ggaaaaactgatagtggctattcaaaaccacctctatctatttattccagCTGTCCCTGCTTCAGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtaaaaactcacacaacgcatggggaaaacagggagagtggagggctatc #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgctttctccccccaccctt Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgtgcccgatcatttgctct Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgctttctccccccaccctt Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgctttctccccccaccctt Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgctttctccccccaccctt Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgctttctccccccaccctt Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgctttctccccccaccctt Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggctttcctgtgggtttagtcttattctttgtggtgatgttttcccagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagatggcccaaaaacgtaaaatgtagccgctttctccccccaccctt #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg #### Cdc42bpg_ID1584_14 --> 0 - 0 Original Alignment CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from CESAR CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Spaln_aa2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Spaln_nt2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Pairagon CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Exonerate_protein2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Exonerate_coding2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from GeneWise CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga #### Cdc42bpg_ID1589_19 --> 0 - 2 Original Alignment GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTG---------CAGGAGGCTCAGCGGCAGGCTGAAcg gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCAT---ATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAAtggtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaag Alignment from CESAR GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCATATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAAtggtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaat Alignment from Spaln_aa2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCATATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAATGgtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaag Alignment from Spaln_nt2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCA---GCTGACGCAGGTG---CAGGAGGCTCAGCGGCAGGCTGAACG gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCATATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAATGgtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaag Alignment from Pairagon GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTG---------CAGGAGGCTCAGCGGCAGGCTGAACG gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCA---TATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAATGgtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaag Alignment from Exonerate_protein2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCATATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAATGgtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaag Alignment from Exonerate_coding2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCATATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAATGgtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaag Alignment from GeneWise GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAG------CAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaggtaggctgggtacccttcacctcaatgtgtcttcacttctccaccagGATCACCAGTGGAAAGCACGGAGGCTGCAGAAGATGGAGGCCTTAGCCCGGCTAGCACTTCAGTCAGCACTGGAAGCTGACATCCGTGCCAAGCAGAGTCTGCAGGAGCATATGCAGGTGCAAGAGGCACAAGAGGCTCAGCGGCAGGCTGAATGgtacgtgtctgaatgggttgggagtgaaacactttccaaggcctggcaag #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaaccctgacattcgacgccccaactcaccatgcagAAGGATTTTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCAGTCTGCGCATGGGGgtgagactctgtaccaagccagaataaaaataggtgggatttctacattg #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt #### Cep55_ID7510_5 --> 2 - 0 Original Alignment gtTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctaggtTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag Alignment from CESAR gtTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctaggtTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag Alignment from Spaln_aa2Genome GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctagGTTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag Alignment from Spaln_nt2Genome GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctagGTTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag Alignment from Pairagon GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctagGTTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag Alignment from Exonerate_protein2genome GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctagGTTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag Alignment from Exonerate_coding2genome GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctagGTTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag Alignment from GeneWise GTTATCTTCAAGTGGAGAAGCAAAAATATGATCATCTCTTGGAAAATGCCAAAAAAGATCTCGAAGTTGAGCGACAAGCCGTGACTCAGTTGCGTTTAGAACTCGATGAATTTCGAAGGAAATACGAAGAAGCTCGAAAAGAAGTTGAAGACTTAAATCAGCTGTTGAGCTCTCAGCGAAAGGCAGACATCCAGCACCTGGAGGAGGACAAGCAGAAGACGGAGAGGATCCAAAAGCTGAGGGAAGAGAGCAGTATCTTCAAGGGAAAGCTGGAAGAGGAGAGGAAGAGGTCGGAGGAGCTCTTATCCCAG atttgtactgtacatgtagcacaggataagtttgtttcttctctccctagGTTATCTTCAAGTAGAGAAACAAAAATATGATCATCTTTTGGAGAATGCCAAGAAAGATCTTGAAGTTGAGCGACAAGTTGTGACTCAGTTACGATTGGACCTTGATGAATTTCGAAGGAAGTATGAAGAAGCTCGAAAAGAGGTGGAGGACTTAAATCAGTTATTGAGCTCCCAGCGGAGGGAAGATATCCAGCACCTGGAGGTGGACAAGCAGAAGACAGAGAGGATCCAGCAGCTGAGAGAGGAGAGTAGTATCTTCAAGGGAAAGCTTGAAGAGGAGAGGAAGAGGTCAGAGGAGCTCCTATCCCAAgtgagtacacctgatgctggcacactatgctttagtgctaaaggaaaaag #### Cep78_ID3973_13 --> 0 - 2 Original Alignment CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTgggtaagaccacagggggggggaaatccacatggctcaatcatagcctacca Alignment from CESAR CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTgg ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTgggtaagaccacagggggggggaaatccacatggctcaatcatagcctacca Alignment from Spaln_aa2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagaccacagggggggggaaatccacatggctcaatcatagcctacca Alignment from Spaln_nt2Genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagaccacagggggggggaaatccacatggctcaatcatagcctacca Alignment from Pairagon CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagaccacagggggggggaaatccacatggctcaatcatagcctacca Alignment from Exonerate_protein2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagaccacagggggggggaaatccacatggctcaatcatagcctacca Alignment from Exonerate_coding2genome CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagaccacagggggggggaaatccacatggctcaatcatagcctacca Alignment from GeneWise CTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATCCTGGACGATGAAGGAGTCTTGGGCAGCATCGAGAATTCTTTTCAGAAGTTTCACGCTTTTTTGGACCTCCTTAAAGACGCTGG ttagatgactttgaagaattgcactattcccccccgtgtccttacagcagCTGGAACATGAAAATGCCCAGCTAAGAAATATAAATTTCTCCCTGTCTGAAGCCCTTCATGCACAGTCCTTGACAAACATGATACTGGACGATGAAGGAGTCTTGGGCAGCATTGAGAATTCTTTTCAGAAGTTTCATGCTTTTTTGGACCTCCTTAAAGACGCTGGgtaagaccacagggggggggaaatccacatggctcaatcatagcctacca #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAagtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAagtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttctcagtgggcagatacctaataccttcccctgtttccttttggacagGGACTGAGTAAATCAACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgaggtgattaatttaacattcatcttggtaggctggctgtatctttgg #### Cnnm1_ID8733_5 --> 0 - 1 Original Alignment GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAg acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAggtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat Alignment from CESAR GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAg acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAggtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat Alignment from Spaln_aa2Genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAGgtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat Alignment from Spaln_nt2Genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAGgtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat Alignment from Pairagon GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAGgtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat Alignment from Exonerate_protein2genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAGgtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat Alignment from Exonerate_coding2genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAGgtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat Alignment from GeneWise GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggaattgcatgatcaaagggtagatctccttctctaccctgtagGGGAAGGTGGAGGTGGAAGTTGGTAAGGAAGGCCTTCGGTTCGAGAATGGCGCCTTTACCTACTATGGTGTTCCAGCAATCATGACCAGTGCTTGCTCAGgtaatctaaatattaacccgggagtgtgtcaggaaagcagtgggggtcat #### Cnnm1_ID8742_10 --> 2 - 1 Original Alignment ctTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGa cctaataacattttggctgagggtgtgagagcctctgtcttgttgttcagctTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGagtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca Alignment from CESAR ctTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGa cctaataacattttggctgagggtgtgagagcctctgtcttgttgttcagctTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGagtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca Alignment from Spaln_aa2Genome CTTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGA cctaataacattttggctgagggtgtgagagcctctgtcttgttgttcagCTTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGAgtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca Alignment from Spaln_nt2Genome CTTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGA cctaataacattttggctgagggtgtgagagcctctgtcttgttgttcagCTTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGAgtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca Alignment from Pairagon CTTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGA cctaataacattttggctgagggtgtgagagcctctgtcttgttgttcagCTTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGAgtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca Alignment from Exonerate_protein2genome CAGCAGCTTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGA cctaataacattttggctgagggtgtgagagcctctgtcttgttGTTCAGCTTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGAgtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca Alignment from Exonerate_coding2genome CAGCAGCTTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGA cctaataacattttggctgagggtgtgagagcctctgtcttgttGTTCAGCTTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGAgtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca Alignment from GeneWise --------------ACAGCAGCTTCGGATCCTGAATGCTGTAATATCCACCTGGATCCAGAGGCCAGCCCCTGCAGCAGCGACTCTGAGGAAAACATGGGCAAGAAGCTGCTGAGAACCTTGA cctaataacattttggctgagggtgtgagAGCCTCTGTCTTGTTGTTCAGCTTCAGATTCTGAATGCTGTAATATCCACCTGGATCCAGAAGCCAGCCCCTGCAGTAGTGACTCAAAAGAAAACATGGGTGAGAAGCTGGTAAGAACCTTGAgtaagtgtccctttcctgggctattgatgctcgctaagttgttgggaaca #### Cnnm2_ID10022_3 --> 2 - 1 Original Alignment ccGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAg ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagcaGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAggtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat Alignment from CESAR ccGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAg ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagcaGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAggtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat Alignment from Spaln_aa2Genome CCGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAG ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagCAGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAGgtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat Alignment from Spaln_nt2Genome CCGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAG ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagCAGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAGgtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat Alignment from Pairagon CCGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAG ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagCAGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAGgtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat Alignment from Exonerate_protein2genome CCGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAG ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagCAGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAGgtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat Alignment from Exonerate_coding2genome CCGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAG ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagCAGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAGgtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat Alignment from GeneWise CCGATAACAGAACAAAAAAGAAAGTGGCCCACCGTGAAAGAAAGCAAGATTTCTCTGCCTTTAAGCAGACGGACAGCGAGATGAAGGTTAAAATATCACCGCAGCTTCTCCTGGCCATGCACCGTTTCCTAGCAACAG ctatccatccataaagaaccctcatcctctgatgtgtctcattcccacagCAGATAACAGAACAAAAAAGAAAGTGGCCCATCGTGAAAGAAAGCAAGACTTCTCAGCCTTCAAGCAGACCGATAGTGAAATGAAGATCAAAATATCACCCCAGCTGCTCCTAGCAATGCACTGCTTCCTAGCAACAGgtgagggtgcttaggtctgcaggccttggatcctttctcaccaaatcgat #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAggtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAggtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg agccaatggtactatatgagtcttgaagactaccaaaattccatctacagccTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAggtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from CESAR ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg agccaatggtactatatgagtcttgaagactaccaaaattccatctacagccTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAggtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Exonerate_coding2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagctTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAcgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagctTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAcgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc #### Col17a1_ID10287_35 --> 2 - 1 Original Alignment gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcaggcCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAggtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca Alignment from CESAR gtCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAg ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcaggcCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAggtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca Alignment from Spaln_aa2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcagGCCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAGgtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca Alignment from Spaln_nt2Genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcagGCCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAGgtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca Alignment from Pairagon GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcagGCCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAGgtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca Alignment from Exonerate_protein2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcagGCCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAGgtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca Alignment from Exonerate_coding2genome GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcagGCCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAGgtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca Alignment from GeneWise GTCCAGCTGGCCCTGCTGGTCTCCCAGGACAACAAG ctgccttggtgttgtagccataaatgaattgtgggtttttgtatcttcagGCCCAGCTGGCCCTGCTGGTCTACCAGGTCAACAAGgtaagcatcagcctgaggtaatcacagtctgtgaggatgaaatgcatgca #### Col17a1_ID10290_32 --> 2 - 1 Original Alignment gaCTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAg agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcaggtCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAggtgagcttctttccacgggagtattttttctctttttctccccttctccc Alignment from CESAR gaCTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAg agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcaggtCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAggtgagcttctttccacgggagtattttttctctttttctccccttctccc Alignment from Spaln_aa2Genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcagGTCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAGgtgagcttctttccacgggagtattttttctctttttctccccttctccc Alignment from Spaln_nt2Genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcagGTCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAGgtgagcttctttccacgggagtattttttctctttttctccccttctccc Alignment from Pairagon GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcagGTCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAGgtgagcttctttccacgggagtattttttctctttttctccccttctccc Alignment from Exonerate_protein2genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcagGTCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAGgtgagcttctttccacgggagtattttttctctttttctccccttctccc Alignment from Exonerate_coding2genome GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAG agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcagGTCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAGgtgagcttctttccacgggagtattttttctctttttctccccttctccc Alignment from GeneWise GACTTCCTGGTAGCCCTGGCCGACCAGGGACTAAAGGCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAGAGGGA agctgtgggacctttgatgatcttgtctcctttcaattcccctgcatcagGTCTCCCAGGTAGCCCTGGCCGACCAGGGACCAAAGGTGAG---------------------CTTCTTTCCACGGGAgtatttttt #### Col17a1_ID10294_28 --> 2 - 1 Original Alignment ggGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGg cagacatactttatagactgctggtacagactaaagttattctgttgcaggaGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGggtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca Alignment from CESAR ggGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGg cagacatactttatagactgctggtacagactaaagttattctgttgcaggaGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGggtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca Alignment from Spaln_aa2Genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacatactttatagactgctggtacagactaaagttattctgttgcagGAGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGGgtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca Alignment from Spaln_nt2Genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacatactttatagactgctggtacagactaaagttattctgttgcagGAGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGGgtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca Alignment from Pairagon GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacatactttatagactgctggtacagactaaagttattctgttgcagGAGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGGgtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca Alignment from Exonerate_protein2genome GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacatactttatagactgctggtacagactaaagttattctgttgcagGAGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGGgtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca Alignment from Exonerate_coding2genome AGGGTGAGAAGGGACCCAGAGGCCTCACAGGGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacatactttatagactgCTGGTACAGACTAAAGTTATTCTGTTGCAGGAGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGGgtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca Alignment from GeneWise GGGAGCCTGGCATTCGAGGTTTGCCTGGAGCTGTGGGTGAACCCGGAGCCAAAGGCGCAATGG cagacatactttatagactgctggtacagactaaagttattctgttgcagGAGAACCTGGAATCCGAGGTTCACCTGGAGCTGTGGGTGAGCCCGGGGCCAGAGGTGCAATGGgtatcaccacaatctgaacagagtatctcaccagtagctccctagttgca #### Col17a1_ID10299_23 --> 2 - 1 Original Alignment ggATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAg agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagggATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAggtgagttataaagactggtcttggttctcagggattgatcacatttaggg Alignment from CESAR ggATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAg agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagggATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAggtgagttataaagactggtcttggttctcagggattgatcacatttaggg Alignment from Spaln_aa2Genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagGGATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAGgtgagttataaagactggtcttggttctcagggattgatcacatttaggg Alignment from Spaln_nt2Genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagGGATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAGgtgagttataaagactggtcttggttctcagggattgatcacatttaggg Alignment from Pairagon GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagGGATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAGgtgagttataaagactggtcttggttctcagggattgatcacatttaggg Alignment from Exonerate_protein2genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagGGATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAGgtgagttataaagactggtcttggttctcagggattgatcacatttaggg Alignment from Exonerate_coding2genome GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagGGATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAGgtgagttataaagactggtcttggttctcagggattgatcacatttaggg Alignment from GeneWise GGATTGCTGGTGAACAAGGTCCTCAGGGCCTTCCTGGTGTCCCAGGTCCTCCGGGTCTCAGAG agagtacctaaattgttccttttcagtagatcgtggcgtatgctctacagGGATTGCCGGAGAACAAGGTCCTCAAGGCCTACCTGGTGTCCCAGGTCCTCTTGGTCTCAGAGgtgagttataaagactggtcttggttctcagggattgatcacatttaggg #### Col17a1_ID10303_19 --> 2 - 1 Original Alignment gtGACATGGGGAGTCAAGGACCTAAAg acaattctgcagagtgatacttctggagttctgtgaatctgtttttctaggtGATATGGGGAGTCAGGGACCTAAAggtatgtattgcaaaaatgccatagaggacagtagatgtgctgattgaatg Alignment from CESAR gtGACATGGGGAGTCAAGGACCTAAAg acaattctgcagagtgatacttctggagttctgtgaatctgtttttctaggtGATATGGGGAGTCAGGGACCTAAAggtatgtattgcaaaaatgccatagaggacagtagatgtgctgattgaatg Alignment from Spaln_aa2Genome GTGACATGGGGAGTCAAGGACCTAAAG acaattctgcagagtgatacttctggagttctgtgaatctgtttttctagGTGATATGGGGAGTCAGGGACCTAAAGgtatgtattgcaaaaatgccatagaggacagtagatgtgctgattgaatg Alignment from Spaln_nt2Genome GTGACATGGGGAGTCAAGGACCTAAAG acaattctgcagagtgatacttctggagttctgtgaatctgtttttctagGTGATATGGGGAGTCAGGGACCTAAAGgtatgtattgcaaaaatgccatagaggacagtagatgtgctgattgaatg Alignment from Pairagon GTGACATGGGGAGTCAAGGACCTAAAG acaattctgcagagtgatacttctggagttctgtgaatctgtttttctagGTGATATGGGGAGTCAGGGACCTAAAGgtatgtattgcaaaaatgccatagaggacagtagatgtgctgattgaatg Alignment from Exonerate_protein2genome GTGACATGGGGAGTCAAGGACCTAAAG acaattctgcagagtgatacttctggagttctgtgaatctgtttttctagGTGATATGGGGAGTCAGGGACCTAAAGgtatgtattgcaaaaatgccatagaggacagtagatgtgctgattgaatg Alignment from Exonerate_coding2genome GTGACATGGGGAGTCAAGGACCTAAAG acaattctgcagagtgatacttctggagttctgtgaatctgtttttctagGTGATATGGGGAGTCAGGGACCTAAAGgtatgtattgcaaaaatgccatagaggacagtagatgtgctgattgaatg Alignment from GeneWise -------AATCTCAGAGGAAGTCCTGGTCCA---AAAGGTGACATGGGGAGTCAAGGACCTAAAGGA---------GACCGAGGCCTTCCTGGGACCCCAG acaattctgcagAGTGATACTTCTGGAGTTCTGTGAATCTGTTTTTCTAGGTGATATGGGGAGTCAGGGACCTAAAGGTATGTATTGCAAAAATGCCATAGAGGACAGTAGATgtgctgattgaatg #### Col17a1_ID10306_16 --> 2 - 1 Original Alignment aaAACCATGGCTACGACCGAGGT---GGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGG---TGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGg accctggctttggctatggattttgtcctatctcatctttggctcaacagaaAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGggtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa Alignment from CESAR aaAACCATGGCTACGACCGAGGTGGCGGTGGTGGC---AGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGG---TGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGg accctggctttggctatggattttgtcctatctcatctttggctcaacagaaAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGggtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa Alignment from Spaln_aa2Genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG accctggctttggctatggattttgtcctatctcatctttggctcaacagAAAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGGgtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa Alignment from Spaln_nt2Genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG accctggctttggctatggattttgtcctatctcatctttggctcaacagAAAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGGgtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa Alignment from Pairagon AAAACCATGGCTACGACCGAGGTGGCGGTGGTGGC---AGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG accctggctttggctatggattttgtcctatctcatctttggctcaacagAAAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGGgtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa Alignment from Exonerate_protein2genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG accctggctttggctatggattttgtcctatctcatctttggctcaacagAAAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGGgtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa Alignment from Exonerate_coding2genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG accctggctttggctatggattttgtcctatctcatctttggctcaacagAAAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGGgtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa Alignment from GeneWise AAAACCATGGCTACGACCGAGGTGGCGGTGGTGGC---AGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGGTGG---AAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG accctggctttggctatggattttgtcctatctcatctttggctcaacagAAAACCATGGCTATGACCGAGGTGGTGGTGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGCAGTGGTGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCAACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGCTGGGTCTACTCTTTGGTCTGATTGCACTGGgtatctatctaggcacatccctgaggtcctgcaggttggagccttctaaa #### Col17a1_ID10315_7 --> 2 - 1 Original Alignment agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagaaAGCAAAATTCGGGTTAGGTTGCAGAGTGCACCACCATCTACCAGAtgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg Alignment from CESAR agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagaaAGCAAAATTCGGGTTAGGTTGCAGAGTGCACCACCATCTACCAGAtgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg Alignment from Spaln_aa2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagAAAGCAAAATTCGGGTTAGGTTGCAGAGTGCACCACCATCTACCAGATgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg Alignment from Spaln_nt2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagAAAGCAAAATTCGGGTTAGGTTGCAGAGTGCACCACCATCTACCAGATgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg Alignment from Pairagon AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagAAAGCAAAATTCGGGTTAGGTTGCAGAGTGCACCACCATCTACCAGATgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg Alignment from Exonerate_protein2genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagAAAGCAAAATTCGGGTTAGGTTGCAGAGTGCACCACCATCTACCAGATgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg Alignment from Exonerate_coding2genome ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagaaagcaaaattcgggttaggttgcagagtgcaccaccatctaccagatgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg Alignment from GeneWise AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcagctcttcattaatgtcggagccggctttacttcaaaccctttgcagAAAGCAAAATTCGGGTTAGGTTGCAGAGTGCACCACCATCTACCAGATgtaggtgagcatggtagtactagcattggagatttttgaaagcttctagg #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCaggtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCaggtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aacagaaaggaaggatttcatcaactgcggcttctctgtttctcccccagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCACTTCCTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGCAGTCAGCAAGTGTGAAATAGCCAGgtgcggacaatcactggggtggttgtatgtcagtgtagtgtcttaatctt #### Cpeb3_ID7269_8 --> 0 - 1 Original Alignment GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta Alignment from CESAR GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta Alignment from Spaln_aa2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta Alignment from Spaln_nt2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta Alignment from Pairagon GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta Alignment from Exonerate_protein2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta Alignment from Exonerate_coding2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta Alignment from GeneWise GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtaattgaaatatgaagttagaaccactgtctgtctttcttcccccagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtaaacggaatgacatacagggcaatagcaaaccccaataccctagctta #### Cpeb3_ID7277_4 --> 2 - 1 Original Alignment ccAGGAGCTATGGGCGGAGACGAg ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagccAGGAGCTATGGGCGGAGACAAggtatgggcttcttataatgggcttttcctgtctctttattatgattacag Alignment from CESAR ccAGGAGCTATGGGCGGAGACGAg ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagccAGGAGCTATGGGCGGAGACAAggtatgggcttcttataatgggcttttcctgtctctttattatgattacag Alignment from Spaln_aa2Genome CCAGGAGCTATGGGCGGAGACGAG ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagCCAGGAGCTATGGGCGGAGACAAGgtatgggcttcttataatgggcttttcctgtctctttattatgattacag Alignment from Spaln_nt2Genome CCAGGAGCTATGGGCGGAGACGAG ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagCCAGGAGCTATGGGCGGAGACAAGgtatgggcttcttataatgggcttttcctgtctctttattatgattacag Alignment from Pairagon CCAGGAGCTATGGGCGGAGACGAG ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagCCAGGAGCTATGGGCGGAGACAAGgtatgggcttcttataatgggcttttcctgtctctttattatgattacag Alignment from Exonerate_protein2genome CCAGGAGCTATGGGCGGAGACGAG ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagCCAGGAGCTATGGGCGGAGACAAGgtatgggcttcttataatgggcttttcctgtctctttattatgattacag Alignment from Exonerate_coding2genome ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagccaggagctatgggcggagacaaggtatgggcttcttataatgggcttttcctgtctctttattatgattacag Alignment from GeneWise ttgggattttaagataaaaaatcatggtctgattgacttttgttctatagccaggagctatgggcggagacaaggtatgggcttcttataatgggcttttcctgtctctttattatgattacag #### Cpeb3_ID7283_2 --> 0 - 1 Original Alignment GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAg taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAggtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga Alignment from CESAR GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAg taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAggtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga Alignment from Spaln_aa2Genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga Alignment from Spaln_nt2Genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga Alignment from Pairagon GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga Alignment from Exonerate_protein2genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga Alignment from Exonerate_coding2genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga Alignment from GeneWise GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG taatttcatgaagttttttatatcatctttttgtgcattttatatctaagGGCCAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCCCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAAGGTAAACACTACCCTCCAGGTGGACCAGCAATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagaaaggttcatatgttcatttctgtcggcaattcccacacttgtga #### Cpn1_ID8877_3 --> 0 - 0 Original Alignment GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact Alignment from CESAR GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact Alignment from Spaln_aa2Genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact Alignment from Spaln_nt2Genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact Alignment from Pairagon GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact Alignment from Exonerate_protein2genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact Alignment from Exonerate_coding2genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact Alignment from GeneWise GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG agacaatatgacacataagcactcatttctcacctagtctcgcttttcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTGCCCCTCCCAGACAACTGGAAAAGTCAAgtaaggagtgaaaatggtaatatggtccaattgaatcattatctggaact #### Cpt1a_ID32_4 --> 0 - 0 Original Alignment GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg Alignment from CESAR GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg Alignment from Spaln_aa2Genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg Alignment from Spaln_nt2Genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg Alignment from Pairagon GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg Alignment from Exonerate_protein2genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg Alignment from Exonerate_coding2genome GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg Alignment from GeneWise GCTATGGTCAAGGTCTTCTCGGGTCGAAAGCCCATGTTGTACAGCTTCCAGACGTCTCTGCCGCGCCTGCCTGTCCCAGCTGTCAAAGATACCGTGAGCAGG taaaccctaagagaataaacgaagttaaggtttgctgttctgcactttagGCTATGGTCAAGGTATTCTCAGGTCGAAAGACCATGTTGTACAGCTTCCAGACAGCGCTGCCGCATCTACCTGTTCCAGCTGTTAAAGATACTGTAAGCAGGgtacgtattatccccacacttgctgtgatactagtaagctagtttccatg #### Cpt1a_ID37_9 --> 2 - 2 Original Alignment acACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACag tctctatctatggcctgcgttattctattgtttctttgttacttgtacagacACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACaggtaagtgtatatataagtggattacatgtacacttcactatacacacata Alignment from CESAR acACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACag tctctatctatggcctgcgttattctattgtttctttgttacttgtacagacACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACaggtaagtgtatatataagtggattacatgtacacttcactatacacacata Alignment from Spaln_aa2Genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgttattctattgtttctttgttacttgtacagACACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtaagtgtatatataagtggattacatgtacacttcactatacacacata Alignment from Spaln_nt2Genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgttattctattgtttctttgttacttgtacagACACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtaagtgtatatataagtggattacatgtacacttcactatacacacata Alignment from Pairagon ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgttattctattgtttctttgttacttgtacagACACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtaagtgtatatataagtggattacatgtacacttcactatacacacata Alignment from Exonerate_protein2genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgttattctattgtttctttgttacttgtacagACACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtaagtgtatatataagtggattacatgtacacttcactatacacacata Alignment from Exonerate_coding2genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgttattctattgtttctttgttacttgtacagACACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtaagtgtatatataagtggattacatgtacacttcactatacacacata Alignment from GeneWise ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgttattctattgtttctttgttacttgtacagACACAATACAACATATCAAAGACAGTAGACACATAGTTGTGTACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTACCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCAGATGCTGCAGATCCTGGATGACACCTCAGAACTCCAACCTGGGGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtaagtgtatatataagtggattacatgtacacttcactatacacacata #### Cpt1a_ID39_11 --> 1 - 0 Original Alignment gTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccaggTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga Alignment from CESAR gTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccaggTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga Alignment from Spaln_aa2Genome GTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccagGTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga Alignment from Spaln_nt2Genome GTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccagGTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga Alignment from Pairagon GTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccagGTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga Alignment from Exonerate_protein2genome GTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccagGTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga Alignment from Exonerate_coding2genome GTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccagGTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga Alignment from GeneWise GTGGTTTGACAAGTCCATCACCTTTGTTGTCTTCAAAAACAGCAAGATAGGCATAAACGCAGAGCATTCCTGGGCGGACGCGCCCATCGTGGGCCATCTGTGGGAG tgacaattataagtacccccacccaaaactaaccactgcccatgtcccagGTGGTTTGACAAGTCCATCAACTTTGTTGTCTTCAAAAACAGCAAAATAGGCATAAATGCAGAGCATTCTTGGGCTGATGCACCCATAGTGGGCCATCTGTGGGAAgtgagtcatgtcattgttacctgttttcaatgtggagggtgtctttggga #### Cpt1a_ID42_14 --> 0 - 0 Original Alignment GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat Alignment from CESAR GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat Alignment from Spaln_aa2Genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat Alignment from Spaln_nt2Genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat Alignment from Pairagon GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat Alignment from Exonerate_protein2genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat Alignment from Exonerate_coding2genome GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat Alignment from GeneWise GACATGGGCAAGTTCTGCCTCACGTATGAGGCTTCCATGACTCGGCTCTTCCGAGAGGGGAGGACAGAGACTGTACGCTCCTGCACTACGGAGTCCTGCAACTTTGTGCTGGCCATGATGGACCCCACAACAACG cacatgctagcctgctagctctagcctactctctggcttggatcctccagGACATGGGTAAATTCTGCCTGACATATGGGGCTTCTATGACTCGACTCTTTCGAGAGGGGAGAACAGAGACAGTTCGCTCCTGCACAACAGAGTCCTCCAACTTTGTGCTGGCTATGATGGATCCTGCAACAACAgtgagtccatggtggcaggaggtgaccctgtttctcaacttgtgggggat #### Crtac1_ID8463_9 --> 1 - 1 Original Alignment tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagtGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAggtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag Alignment from CESAR tGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAg agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagtGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAggtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag Alignment from Spaln_aa2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagTGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAGgtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag Alignment from Spaln_nt2Genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagTGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAGgtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag Alignment from Pairagon TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagTGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAGgtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag Alignment from Exonerate_protein2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagTGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAGgtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag Alignment from Exonerate_coding2genome TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagTGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAGgtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag Alignment from GeneWise TGTCATCCGCAGGGAGCACGGGGACCCTCTCATCGAGGAGCTCAATCCTGGTGACGCCCTAGAGCCTGAGGGCCGGGGTACAG agagaccagctgcttgaagtgcccgaggtattccattgctgttcttgtagTGTCATCCGCAGGGACCATGGGGACCCTCTCATTGAGGAGCTCAATCCGGGTGATGCCCTAGAGCCTGAGGGTCGGGGTAAAGgtactagacctgaaggttgtaggaccagtcctcatctaagaagttggtag #### Crtac1_ID8485_3 --> 1 - 1 Original Alignment gTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAg agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcaggTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAggtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt Alignment from CESAR gTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAg agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcaggTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAggtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt Alignment from Spaln_aa2Genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcagGTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt Alignment from Spaln_nt2Genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcagGTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt Alignment from Pairagon GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcagGTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt Alignment from Exonerate_protein2genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcagGTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt Alignment from Exonerate_coding2genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcagGTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt Alignment from GeneWise GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agcttcctagggcaaagtcaccttgtgggcttctcctttgcttttctcagGTACACTGGTCCCAACCTGGTTTTGAAGTACAACCAGGCCCAGAATCAGCTGGTCAATATTGCAGTGGACAAGCGCAGCTCACCCTACTATGCCCTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtctgcgctggtttgtccagtctcgtcctgaccctcttgaatgtctcctt #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCggtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCggtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from CESAR AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Pairagon AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Exonerate_protein2genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Exonerate_coding2genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from GeneWise AGCGCAGAGCCAGGAAGCACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCggtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCggtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataatcgagccacatttgcgaatcaatacttttctttctttttcttacagCTCTGTAGTTTTGAAGCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACCGgtgagtgattactcaaggagactaggaagagccaagatcatacccaagta #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagagGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagagGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagAGGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGT------GAAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagAGGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagAGGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagAGGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagAGGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagtactcatctctacggccatcatctctcttgcagAGGAAGAATTCCACACCATCTACCTGATTCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCAAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATCAGgtgagggtaacttgaaattggaagaggttgcaaggcattagagagctgac #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcaggaGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcaggaGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcagGAGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcagGAGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcagGAGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcagGAGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcagGAGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaggtcatcaatttctctccaccgtttcttcagGAGGGCTGGAGACAGAGGATGACTATGGCTATCAGGGTCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCAAAAGTCTACATCAACGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaagagagggtccctgtaggtgaatcagggttaataccactgggccaaa #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACcgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACcgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttttgatgctggccccttcctgcttttcctcctgaagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGTAGCCCTTGGCTAATTGATCATGCAGTGTTGCTCGTAGGCCATGGCAACCgtacggtctgttgtctgcctcaggctacagtcagcagctagacagcagcc #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Spaln_aa2Genome GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Spaln_nt2Genome GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagagaagttgcaaccatttccctggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagagaagttgcaaccatttccctggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from GeneWise GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagagTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACagtatacaggtgggtgatgggcagatgtacaagggaaatttcccaccagaa Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagagTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACagtatacaggtgggtgatgggcagatgtacaagggaaatttcccaccagaa Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagAGTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACAgtatacaggtgggtgatgggcagatgtacaagggaaatttcccaccagaa Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagAGTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACAgtatacaggtgggtgatgggcagatgtacaagggaaatttcccaccagaa Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTC--------ACAG ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagAGTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACAGTATACAGgtgggtgatgggcagatgtacaagggaaatttcccaccagaa Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagAGTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACAgtatacaggtgggtgatgggcagatgtacaagggaaatttcccaccagaa Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagAGTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACAgtatacaggtgggtgatgggcagatgtacaagggaaatttcccaccagaa Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG ctagccactacctgtctcaaaacagaaccaggctcctccatgcttcacagAGTACACTCATCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACAGCAGGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCAACAgtatacaggtgggtgatgggcagatgtacaagggaaatttcccaccagaa #### Cutc_ID8809_4 --> 2 - 1 Original Alignment gtGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAg cccagagaatttatctcagagtcaaactaagggccctcttctttcttcaggtGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTGTGggtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca Alignment from CESAR gtGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAg cccagagaatttatctcagagtcaaactaagggccctcttctttcttcaggtGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTGTGggtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca Alignment from Spaln_aa2Genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG cccagagaatttatctcagagtcaaactaagggccctcttctttcttcagGTGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTGTGGgtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca Alignment from Spaln_nt2Genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG cccagagaatttatctcagagtcaaactaagggccctcttctttcttcagGTGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTGTGGgtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca Alignment from Pairagon GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG cccagagaatttatctcagagtcaaactaagggccctcttctttcttcagGTGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTGTGGgtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca Alignment from Exonerate_protein2genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG cccagagaatttatctcagagtcaaactaagggccctcttctttcttcagGTGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTGTGGgtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca Alignment from Exonerate_coding2genome GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTTGTAG cccagagaatttatctcagagtcaaactaagggccctcttctttcttcagGTGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTGTGGgtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca Alignment from GeneWise GTGTTCTTCAAGTAGTAAAACAGAGTGTTCAGATCCCAGTGTTTGTGATGATCCGCCCACGCGGAGGCGACTTCTTATACTCCGACCGTGAAGTTGAGGTGATGAAGGCTGACATTCGCCTTGCCAAGCTTTATGGTGCCGATGGTTTGGTGTTTGGGGCATTGACTGAAGATGGACACATTGACAAAGAGCTATGCTTGTCTCTT cccagagaatttatctcagagtcaaactaagggccctcttctttcttcagGTGTTCTTCAAGTGGTGAAACAGAGTGTTCACGTCCCAGTGTTTGTGATAATTCACCCACGTGGTGGTGACTTCCTGCACTCTGACCATGAGGTTGAGGTGATGAAGGCTGACATTCGCCTCGCCAAGCTTTATGGTGCTGATGGTTTAGTGTTTGGGGCATTGACTGAAGACGGACACGTTGACAGAGAATTATGCCTATCTCTTgtgggtgggtgttaacatcctaggtgaagtacatggaccacacaaacacagaca #### Cyb561a3_ID2891_3 --> 0 - 2 Original Alignment TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTtt cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTctgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg Alignment from CESAR TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTtt cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTctgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg Alignment from Spaln_aa2Genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTCTgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg Alignment from Spaln_nt2Genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTCTgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg Alignment from Pairagon TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTCTgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg Alignment from Exonerate_protein2genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTCTgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg Alignment from Exonerate_coding2genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTCTgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg Alignment from GeneWise TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT cactacccatagtcctgaccatgcatcacctgctgcttttcctttctcagTGGTTCCTGGGTGTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACATCTGTAATTTCAGGTATTAATGAGAAGCTTTTCTTTGTTCTgtatgttgcaatggacgcctagcacttggggatttaggagggaatagtgg #### Cyb561a3_ID2892_4 --> 1 - 0 Original Alignment gAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaaggaaaaatgccaccacccaacgcttttctcgtcacaggAAAAATGCCACCAAGCCC---------------------------------TACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc Alignment from CESAR gAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaaggaaaaatgccaccacccaacgcttttctcgtcacaggAAAAATGCCACCAAGCCCTAC---------------------------------AGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc Alignment from Spaln_aa2Genome GAAAAATGCC---ACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaagGAAAAATGCCACCACCCAACGCTTTTCTCGTCACAGGAAAAATGCCACCAAGCCCTACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc Alignment from Spaln_nt2Genome GAAAAATGCCACCA---AGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaagGAAAAATGCCACCACCCAACGCTTTTCTCGTCACAGGAAAAATGCCACCAAGCCCTACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc Alignment from Pairagon GAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaaggaaaaatgccaccacccaacgcttttctcgtcacagGAAAAATGCCACCAAGCCCT---------------------------------ACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc Alignment from Exonerate_protein2genome GAAAAATGCC---ACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaagGAAAAATGCCACCACCCAACGCTTTTCTCGTCACAGGAAAAATGCCACCAAGCCCTACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc Alignment from Exonerate_coding2genome GAAAAATGCC---ACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaagGAAAAATGCCACCACCCAACGCTTTTCTCGTCACAGGAAAAATGCCACCAAGCCCTACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc Alignment from GeneWise GAAAAATGCCACCAAGCCCTACTCCAGCCTGCCTGGTGAGGCTGTCTTTGCCAACAGCACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTTCTCTATGTTCTTCTGGCTTCATCATGGAAGCGTCCAGATCCAGGAGCTCTGACTGATAGACAG cacatcattttaaggaaaaatgccaccacccaacgcttttctcgtcacagGAAAAATGCCACCAAGCCCTACAGC---------------------------------ACAGGGCTCTTGGTGGTGGCTTTTGGCTTGCTGGTGCTCTATGTGCTTCTGGCTTCATCATGGAAGCGACCAGATCCAGGAGCTCTAACTGATAGAGAGgtaatacactagtctctctttaagatgttggcacatgttaggaaagattc #### Cyp2c29_ID7759_2 --> 0 - 1 Original Alignment TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTg tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATggtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg Alignment from CESAR TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTg tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATggtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg Alignment from Spaln_aa2Genome TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATGgtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg Alignment from Spaln_nt2Genome TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATGgtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg Alignment from Pairagon TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATGgtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg Alignment from Exonerate_protein2genome TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATGgtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg Alignment from Exonerate_coding2genome TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATGgtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg Alignment from GeneWise TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG tccaggttacatatgtgtgcagatgtttaccccccaccttgacctgcaagTTCTCAAAAGCTTATGGGCCTGTGTTCATTCTGTATTTGGGCTCAAAGCCCACTGTAATATTGCATGGGTATGAAGCAGTGAAGGAAACCCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGGGGAAGCTTCCCAATGGCTGAAAAGATCATTAAAGGCTATGgtatgtatgtgtgtgtgctcatgcgtcttgtacagtgagtaaaagatatg #### Cyp2c29_ID7763_6 --> 0 - 1 Original Alignment GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTggttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg Alignment from CESAR GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAg agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTggttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg Alignment from Spaln_aa2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg Alignment from Spaln_nt2Genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg Alignment from Pairagon GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg Alignment from Exonerate_protein2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg Alignment from Exonerate_coding2genome GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg Alignment from GeneWise GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG agtgataagctaccctagtaaatcaaatctccccccaccctttcctgcagGTAAACCACATTGAACCCTCAGAGTTCTCACTTGAAAATCTGGCAAGCACAATAAATGACCTCTTTGGGGCAGGGACAGAGACCACACGCACAACACTGAGATATGCCCTCCTACTCTTGCTGAAATACCCAGATGTCACTGgttagaccacacacagttggtgcatcacaacacggactgctggaaaggtg #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcaggcCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATtgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcaggcCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATtgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacacctgtatctttttcttctgcagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCACTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGGTCGCATTCAAGAGGAAGCACATTGTCTTGTTGAGGAACTTAGGAAGACCAATTgtacaactaggtttatatcagtgattttgttcttatcaaattcgactatc #### Cyp2c37_ID7843_6 --> 0 - 1 Original Alignment GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAg ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAggtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga Alignment from CESAR GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAg ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAggtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga Alignment from Spaln_aa2Genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAGgtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga Alignment from Spaln_nt2Genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAGgtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga Alignment from Pairagon GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAGgtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga Alignment from Exonerate_protein2genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAGgtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga Alignment from Exonerate_coding2genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAGgtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga Alignment from GeneWise GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG ttgctatacttgatagacttgtgtgttatttccttctgcccccgccacagGAAGATGGCAATCAACCATTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACCGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCACATGTCACAGgtggggctgacacaggtattgaggcagtgtgtcctcgtcaaggttttaga #### Cyp2c38_ID7772_8 --> 0 - 1 Original Alignment GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAg attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCTG------------GAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAggtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg Alignment from CESAR GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAg attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCTG------------GAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAggtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg Alignment from Spaln_aa2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAG attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCTG------------GAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAGgtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg Alignment from Spaln_nt2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAG attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCT------------GGAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAGgtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg Alignment from Pairagon GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAG attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCT------------GGAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAGgtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg Alignment from Exonerate_protein2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAG attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCTG------------GAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAGgtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg Alignment from Exonerate_coding2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAG attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCTG------------GAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAGgtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg Alignment from GeneWise GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCCAACCCAGAGATGTTTGACCCTGGCCACTTTCTAGACGCTAATGGAAACTTTAAGAAAAGTGACTACTTCATGACTTTCTCAGCAG attaagtcactacaggaccttttcattccctctgaatctgttgtctgcagGGAACAACAGTTGTTGCATCACTGGCATCTGTTCTG------------GAGTTCCCCAACCCAGAGACTTTCGACCCTGGCCACTTTCTTGATGCTAACAGAAACTTCAAAAAAAGTGATTATTTCATGACATTCTCTGTAGgtaagtgaggcacatttgtatagtattgggggcactggtggggatctgtg #### Cyp2c38_ID7773_7 --> 2 - 0 Original Alignment ctAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagctAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGT---------------CGTGCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg Alignment from CESAR ctAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagctAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGTCGT---------------GCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg Alignment from Spaln_aa2Genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagCTAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGTCGT---------------GCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg Alignment from Spaln_nt2Genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagCTAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGTCG---------------TGCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg Alignment from Pairagon CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagCTAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGTCG---------------TGCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg Alignment from Exonerate_protein2genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagCTAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGTCGT---------------GCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg Alignment from Exonerate_coding2genome CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagCTAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGTCGT---------------GCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg Alignment from GeneWise CTAAAGTCCAAGAAGAGATTGACCATGTGGTTGGTAGACACCGTAGCCCCTGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACCTACCCCATGCAGTGACCTGTGACATTAAATTCAGAAACTACATCATCCCCAAG ggatgtcaatcccaatgtacccatttccgcttccctccatctggaactagCTAAAGTCCAAGAAGCTACTGACCACGTGGTTGGTAGACACTGCAGTCCCTGCATGCAAGACAGGAGTCGT---------------GCCATGATCCACGAGGTCCAGAGATTCATCAATCTTGTCCCCAAGAACCTACCCCATGCAGTAACCTGTGACATTGAATTCAGAAACTATATCATCCCCAAGgtaagtttggcagttctgctgcactttgtgctcttgataatcctagaagg #### Cyp2c38_ID7774_6 --> 0 - 1 Original Alignment GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAg tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAggtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt Alignment from CESAR GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAg tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAggtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt Alignment from Spaln_aa2Genome GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAGgtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt Alignment from Spaln_nt2Genome GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAGgtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt Alignment from Pairagon GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAGgtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt Alignment from Exonerate_protein2genome GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAGgtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt Alignment from Exonerate_coding2genome GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAGgtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt Alignment from GeneWise GCAAACCACATCGAACAAGCAGAATATTCACTTGAAAATCTGGTCTGCACTATCAATAATCTCTTTGCTGCAGGAACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG tgcaataatatatgatacctgtactgatatgtactttgctttctttaaagGCAAACCACATTGAACAAGCAGAATATTCACTTGAAAACCTAGTCTGCACTATCAATAATCTGTTTGCTGCAGGAACAGAAACAACAAGCACAACACTGAGATATGCTCTCCTCCTCCTAATGAAGTACCCCGATGTCACAGgtgagggattagcaatttaaccacagttagcctatagcatagtgtcttgt #### Cyp2c38_ID7776_4 --> 2 - 0 Original Alignment gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccaggcTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt Alignment from CESAR gcTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccaggcTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt Alignment from Spaln_aa2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt Alignment from Spaln_nt2Genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt Alignment from Pairagon GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt Alignment from Exonerate_protein2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt Alignment from Exonerate_coding2genome GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt Alignment from GeneWise GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tgaccatgcttagccttactatgctcccaacagtctagtttctttaccagGCTCACCTTGTGACGCCACATTCATTCCAAGCTGTGCTCCATGCAATGTCACCTGCTCAATTATATATCAGGATCGTTTTGATTACAAGGACAAAGATTTCCTTATGCTTATGAAAAAACTAAATGAGAATGTCAAGATTTTGAGCTCTCCGTGGTTGCAGgtaacctcaagtaattttttcctctgtgaaaacatttctaatgccatatt #### Cyp2c39_ID7786_5 --> 0 - 0 Original Alignment GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt Alignment from CESAR GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt Alignment from Spaln_aa2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt Alignment from Spaln_nt2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt Alignment from Pairagon GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt Alignment from Exonerate_protein2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt Alignment from Exonerate_coding2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt Alignment from GeneWise GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG tgtatctgagttaatgttggtttcagacttagctttgtttttattgatagGTCTGCAATAATTTTCCCTTGCTTATTGACTATTGTCCAGGGAGTCATCACAAAGTACTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTCGAGAAAATAGAAGAACACCAAGAATCACTGGATGTTACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAAAAACAGgtgagttgttaatgtaagactattttattgtttgtgcattatttgggctt #### Cyp2c39_ID7789_8 --> 0 - 1 Original Alignment GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACAT---GGCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAggtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta Alignment from CESAR GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAg tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACAT---GGCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAggtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta Alignment from Spaln_aa2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACAT---GGCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAGgtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta Alignment from Spaln_nt2Genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACATG---GCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAGgtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta Alignment from Pairagon GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACATG---GCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAGgtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta Alignment from Exonerate_protein2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACAT---GGCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAGgtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta Alignment from Exonerate_coding2genome GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACAT---GGCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAGgtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta Alignment from GeneWise GGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGACAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAGAAAAGTGACCACTTCATGCCTTTCTCAGCAG tggagactgttttttgataacctggttttttttccatttctctcttccagGGAACGACAGTAGTAACATCACTGACATCAGTTCTACAT---GGCAAGGAATTCCCAAACCCAGAGTTGTTTGACCCTTGCCACTTTCTAGGCGCTAATGGAAACTTTAAGAAGAGTGACAGATTAATGCCTTTTTCAGCAGgtaagtgaaaaccagtctcagggctctagtgacaaaaagtctgtagagta #### Cyp2c40_ID7817_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagctAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagctAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagCTAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagCTAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagCTAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagCTAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagCTAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG ctaggctatacttctcacattgcaatatctttttccttttttggccttagCTAAAGTCCAAGAAGAGATAGATAATGTGAATGGAAGACACCACAGCCCCTGTATGCAGGACAGGAACCATATGCCTTACACAAATGCCATGGTGCATGAGGTTCAGCGATACAATGACCTTGGTCCGAATGGTGTGGTGCATGAAGTTACCTGTGACACCAAGTTAAGGAACTACCTCATCCCCAAGgtgagtatgcttcttcttgttcacataaatatgatgatgaggacaggtat #### Cyp2c40_ID7818_6 --> 0 - 1 Original Alignment AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAggtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca Alignment from CESAR AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAggtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca Alignment from Spaln_aa2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAGgtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca Alignment from Spaln_nt2Genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAGgtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca Alignment from Pairagon AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAGgtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca Alignment from Exonerate_protein2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAGgtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca Alignment from Exonerate_coding2genome AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAGgtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca Alignment from GeneWise AAAAATGGCATTGAGCACATGGACTATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcattgtgaaagacaatccttcactgatctgtctttccttttttttttagAAAAATGGCATTGAGCACATGGACTATGCCATTGAACACCTGGCAACATTAGTGACTGATTTAGTTTTTGGGGGGACAGAGACATTAAGCTCCACAATGAGATTTGCCCTTGTGCTCTTGATGAAGCACACGCACATCACAGgtaagtagtcaacagacacctggtgaactgaactgattttaaacaattca #### Cyp2c44_ID8884_7 --> 2 - 0 Original Alignment ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagcaAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt Alignment from CESAR ccAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagcaAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt Alignment from Spaln_aa2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagCAAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt Alignment from Spaln_nt2Genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagCAAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt Alignment from Pairagon CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagCAAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt Alignment from Exonerate_protein2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagCAAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt Alignment from Exonerate_coding2genome CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagCAAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt Alignment from GeneWise CCAAAGTTCATGAAGAACTTGATCGTGTGATTGGACGCCACCAACCCCCCAGCATGAAGGACAAGATGAAGCTGCCCTATACAGATGCCGTGCTGCATGAGATTCAAAGATACATCACTCTCCTTCCTTCTAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTCAGACACTATGTCATCCCCAAG tgggtttcctgggcatactggcccaaggttaaaaaaacattgtctttaagCAAAAGTTCATGAGGAACTTGACCGTGTGATTGGGTGCCACCAACCCCCCAGCATGAAGGACAAGATGAGGCTGCCCTATACAGATGCTGTGCTTCATGAGATTCAAAGGTACATTACTCTCCTTCCATCGAGTCTGCCCCATGCTGTGGTCCAGGACACAAAATTTAGACACTACGTCATCCCCAAGgtacgctccactcacaaagatatgggggaaggaaagagttaacatggatt #### Cyp2c44_ID8887_4 --> 2 - 0 Original Alignment ctCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagctCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg Alignment from CESAR ctCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagctCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg Alignment from Spaln_aa2Genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagCTCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg Alignment from Spaln_nt2Genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagCTCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg Alignment from Pairagon CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagCTCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg Alignment from Exonerate_protein2genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagCTCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg Alignment from Exonerate_coding2genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagCTCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg Alignment from GeneWise CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG atcactaacagtccactgatcttagttttgaatgctctcttcttctccagCTCAACCCTTTGACCCCACGTTCATCCTTGCCTGCACTCCTTGCAATGTGATCTGCTCCATACTTTTCAACAAGCGATTCCCATACAATGACAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagtcctggggtcttcgtaagtatggcccacctagtcctcacctagtg #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGggtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGggtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agagaatgtgtgagcccaattccagctatccctgctccttcccacttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg agagaatgtgtgagcccaattccagctatccctgctccttcccacttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG agagaatgtgtgagcccaattccagctatccctgctccttcccacttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaggacaggtgcagactcagaacttggtgtgatcttaatcaggtttttc #### Cyp2c50_ID7863_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacaggcTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa Alignment from CESAR gcTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacaggcTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacagGCTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacagGCTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa Alignment from Pairagon GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacagGCTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacagGCTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacagGCTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa Alignment from GeneWise GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAACTGAATGAAATAACCAAGATAATGAGCACCCCTTGGTTGCAG gagatagtctctgacttccatgtgtattcctcactctctctcccccacagGCTCACCCTGTGATCCCGCCTTCATCTTGGGCTGTGCTCCCTGCAATGACATCCGCTCAATCATTTTTGATGATCGGTTTGAGTATAAAGATCGGGATTTTCTTAATTTGATGGAAAAGCTGAATAAGATATCTAAAATAATGAGCATGCCTTGGCTACAAgtatcgtcatggctttgtgactccatggaaagtctgttaatccttattaa #### Cyp2c50_ID7864_5 --> 0 - 0 Original Alignment GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAA---GAAGAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg Alignment from CESAR GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAA---GAAGAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg Alignment from Spaln_aa2Genome GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAAGAA---GAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg Alignment from Spaln_nt2Genome GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAA---GAAGAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg Alignment from Pairagon GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAA---GAAGAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg Alignment from Exonerate_protein2genome GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAA---GAAGAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg Alignment from Exonerate_coding2genome GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAA---GAAGAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg Alignment from GeneWise GTTTGCAATACATTTCCTGTTCTGCTTGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAAAAATTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAATGGAGGCCAG tttgtccatttatccatttgataaacactatgactttcctacccttccagGTTTGCAATACATTTCCTGTTCTGCTGGATTATTGTCCAGGAAGTCATAACAAAGTTTTTAATAACTATGCTTGTATTAAAAATTTCCTTTTGGAGAAAATAAAAGAA---GAAGAATCATTGGATGTGACAATTCCTCGGGATTTTATTGATTATTTCCTTATTAATGGAGGTCAAgtaagtaggttagattcacatatacaatttcaaagcttactaaggttttg #### Cyp2c50_ID7865_6 --> 0 - 1 Original Alignment GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAg tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAggtgagttgcggatcccccagctcaattgttaatattttttttatgatcag Alignment from CESAR GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAg tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAggtgagttgcggatcccccagctcaattgttaatattttttttatgatcag Alignment from Spaln_aa2Genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAGgtgagttgcggatcccccagctcaattgttaatattttttttatgatcag Alignment from Spaln_nt2Genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAGgtgagttgcggatcccccagctcaattgttaatattttttttatgatcag Alignment from Pairagon GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAGgtgagttgcggatcccccagctcaattgttaatattttttttatgatcag Alignment from Exonerate_protein2genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAGgtgagttgcggatcccccagctcaattgttaatattttttttatgatcag Alignment from Exonerate_coding2genome GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAGgtgagttgcggatcccccagctcaattgttaatattttttttatgatcag Alignment from GeneWise GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG tcagtaaaagtcaagaaataaataacatgtggtcttgatttctgttttagGAAAATAGTAACTATCCACTGGAGAATAAACTTGAGCACCTGGCAATCACAGTGCTTGATCTTTTCTCCGCTGGTCCAGAGACAACCAGTACAACACTGAGATATGCTATCCTACTCCTGCTAAAGTACTCACATGTTACAGgtgagttgcggatcccccagctcaattgttaatattttttttatgatcag #### Cyp2c55_ID7728_5 --> 0 - 0 Original Alignment GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac Alignment from CESAR GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac Alignment from Spaln_aa2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac Alignment from Spaln_nt2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac Alignment from Pairagon GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac Alignment from Exonerate_protein2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac Alignment from Exonerate_coding2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac Alignment from GeneWise ---TACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaatatagtgagtgactgattcacgcatccctctttgccttgcagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATTAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtgagtggttaatttataccattaaaaaatttacttatcattcattaaac #### Cyp2c55_ID7731_8 --> 0 - 1 Original Alignment GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAg tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAggtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat Alignment from CESAR GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAg tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAggtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat Alignment from Spaln_aa2Genome GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAGgtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat Alignment from Spaln_nt2Genome GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAGgtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat Alignment from Pairagon GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAGgtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat Alignment from Exonerate_protein2genome GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAGgtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat Alignment from Exonerate_coding2genome GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAGgtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat Alignment from GeneWise GGCACAGAGTTAGTAACATCACTGACTTCTGTGCTGCATGATGACAAAGAATTTCCCAACCCAGAAGTATTTGACCCTGGCCATTTTCTGGATGAGAATGGGAACTTTAAGAAGAGTGACTACTTTATGCCTTTCTCAATAG tggggtcctatcctttattggggggtcctgtgctctgtctgtcttttcagGGTACAGAGTTAGTATCATCACTAACTTCTGTTCTGCATGATGACAACGAATTTCCCAATCCAGAAGTTTTTGAACCAGGCCATTTTCTGGACGAGAATGGGAACTTTAAGAAGAGTGACTATTTTATGCCTTTCTCAATAGgtaattttttttctgatttttaaggttcaaggtaaaccatttgagggcat #### Cyp2c65_ID7736_2 --> 0 - 1 Original Alignment TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAAGCTGTG---AAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCg agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTggtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac Alignment from CESAR TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAAGCT---GTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCg agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTggtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac Alignment from Spaln_aa2Genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac Alignment from Spaln_nt2Genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGA---AGCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac Alignment from Pairagon TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGA---AGCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac Alignment from Exonerate_protein2genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac Alignment from Exonerate_coding2genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac Alignment from GeneWise TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG agttttgaataccttcacgctctatttttgtatattgtttatacttgcagTTTTCAAAAGTATATGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCTGTGGTGCTACACGGATACGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtaagcgttgttgtgcctatctgcacaagcatccagatgtacttgtgtac #### Cyp2c65_ID7739_5 --> 0 - 0 Original Alignment ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg Alignment from CESAR ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg Alignment from Spaln_aa2Genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg Alignment from Spaln_nt2Genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTTA---ATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg Alignment from Pairagon ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTTA---ATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg Alignment from Exonerate_protein2genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg Alignment from Exonerate_coding2genome ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg Alignment from GeneWise ATTTGCAATAATTTTCCTGCTGTCATTGATTATCTACCAGGAAGACACAGAAAATTACATAAAAATTTTGCCTTTGCAGAACATTACTTTTTGTCAAAAGTAAAACAGCATCAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAACAG gcaagagcacttgtgcatgtgttgttaataatatcctcttctctttctagATTCGCAATAATTTTCCTGCTGTCATTGATTATCTTCCAGGAAGGCACAGAAAATTACATAAAAATTTTGCTTTTGCAGAACTTTACCTTCTGTCACAAGTAAGAAAACATCAAGAGTCACTGGATATTAACAATCCTAGGGACTTT---AATTGTTTCCTAATCAAGATGGAACAGgtaagttatttgtctgtttgagctgtggtgttagtcccattaattgtttg #### Cyp2c65_ID7742_8 --> 0 - 1 Original Alignment GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAggtgggaataattacctccttatttttttgaatcttacagaagctcaagtc Alignment from CESAR GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAggtgggaataattacctccttatttttttgaatcttacagaagctcaagtc Alignment from Spaln_aa2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGgtgggaataattacctccttatttttttgaatcttacagaagctcaagtc Alignment from Spaln_nt2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGgtgggaataattacctccttatttttttgaatcttacagaagctcaagtc Alignment from Pairagon GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGgtgggaataattacctccttatttttttgaatcttacagaagctcaagtc Alignment from Exonerate_protein2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGgtgggaataattacctccttatttttttgaatcttacagaagctcaagtc Alignment from Exonerate_coding2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGgtgggaataattacctccttatttttttgaatcttacagaagctcaagtc Alignment from GeneWise GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCCCAACCCAGAGAAGTTTGACCCCAGTCACTTTCTGGATGAGCGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG gcttttaatctcttgataggactttactccccagctggctgtcattgcagGGTACTACTGTCATAGCATCACTGACTTCTGTGCTGTATGATGATAAAGAATTCCCTAATCCAGAGAGGTTTGACCCCAGTCACTTTTTAGAGGAACATGGCAGGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAGgtgggaataattacctccttatttttttgaatcttacagaagctcaagtc #### Cyp2c68_ID7806_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagccAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGCAA---GTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGC---AGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagccAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGCAA---GTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagCCAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGC---AGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagCCAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGCA---AGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACA---CCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagCCAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGC---AAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagCCAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagCCAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtacaggcagatttttcccatatgtgtattgtgttttttcccctgtagCCAAAGTCCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCCATGGTGCATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagtttccttgaatgtgttatttcagttccttgttaccgtttgggtgc #### Cyp2c69_ID7828_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagctAAAGTCCAGGAAGAGATCGAT---GGGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagctAAAGTCCAGGAAGAGATCGATGGG---ATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagCTAAAGTCCAGGAAGAGATCGATGGG---ATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagCTAAAGTCCAGGAAGAGAT---CGATGGGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagCTAAAGTCCAGGAAGAGATCG---ATGGGATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagCTAAAGTCCAGGAAGAGATCGATGGG---ATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagCTAAAGTCCAGGAAGAGATCGATGGG---ATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGCAGCCCCTGTATGCAGGACAGGAAACATATGCCTTACACAAATGCCATGGTGCATGAGGTCCAACGATACGTTGACCTTGGCCCAACTAGTTTGGTGCATGAAGTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCCAAG gtctattccttatcccaaagctatatttgtcaaacttcctttctctccagCTAAAGTCCAGGAAGAGATCGATGGG---ATTGGGAGACCCCGCAGCCGTTGTATGCAGGACAGGAAAGACATGCCGTACACAAACGCCATGGTGCATGAGGTCCAACGATATGTTGATGTTTGCCCGACTAGTTTGGTGCATGAGCTAACCTGTGACACTAAGTTCAGAAACTACTTCATCCCTAAAgttagtctggttcctggcagtttctgtgcttctggtgttcccaaatacaa #### Cyp2c70_ID7872_8 --> 0 - 1 Original Alignment GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAg caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAggtgagtagttggattcatatacattcaggcccagtgaaggtaatcaggac Alignment from CESAR GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAg caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAggtgagtagttggattcatatacattcaggcccagtgaaggtaatcaggac Alignment from Spaln_aa2Genome GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAG caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAGgtgagtagttggattcatatacattcaggcccagtgaaggtaatcaggac Alignment from Spaln_nt2Genome GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAG caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAGgtgagtagttggattcatatacattcaggcccagtgaaggtaatcaggac Alignment from Pairagon GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAG caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAGgtgagtagttggattcatatacattcaggcccagtgaaggtaatcaggac Alignment from Exonerate_protein2genome GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAG caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAGgtgagtagttggattcatatacattcaggcccagtgaaggtaatcaggac Alignment from Exonerate_coding2genome GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAG caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAGgtgagtagttggattcatatacattcaggcccagtgaaggtaatcaggac Alignment from GeneWise GGCACAAGTGTAATGGCATGTCTGACTTCTGTCCTGAATGATGACAAAGAATTTCCCAACCCAGAGAAGTTTGATCCTGGCCACTTTCTTGATGAGAAAGGGAACTTCAAAAAGAGTGACTACTTTGTGGCTTTCTCAGCAGGAAG caggcttccctcttcccttatagggctcctggttcttttcttctttgcagGGCACAAGTGTTATGGCATGTCTGACTTCCATCCTGAATGATGAGAAAGAATTTCCCAACCCAGAAAAGTTTGATCCTGGTCACTTTCTTGATGAAAAAGGGAACTTTAAAAAGAGTGACTACTTTGTGGCTTTCTCAGAAGGTGAgtagttggattcatatacattcaggcccagtgaaggtaatcaggac #### Cyp2c70_ID7877_3 --> 2 - 1 Original Alignment gcATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATg caatctctattgatgagaaaaggtttcttatgttgttcattccttaataggcATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATggtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta Alignment from CESAR gcATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATg caatctctattgatgagaaaaggtttcttatgttgttcattccttaataggcATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATggtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta Alignment from Spaln_aa2Genome GCATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATG caatctctattgatgagaaaaggtttcttatgttgttcattccttaatagGCATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATGgtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta Alignment from Spaln_nt2Genome GCATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATG caatctctattgatgagaaaaggtttcttatgttgttcattccttaatagGCATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATGgtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta Alignment from Pairagon GCATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATG caatctctattgatgagaaaaggtttcttatgttgttcattccttaatagGCATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATGgtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta Alignment from Exonerate_protein2genome GCATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATG caatctctattgatgagaaaaggtttcttatgttgttcattccttaatagGCATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATGgtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta Alignment from Exonerate_coding2genome GCATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATG caatctctattgatgagaaaaggtttcttatgttgttcattccttaatagGCATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATGgtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta Alignment from GeneWise GCATCGTCTTCAGCAATGGAGAAACATGGAAACAAACCCGGCGTTTCTCCCTCATGGTCTTAAGGTCTATGGGGATGGGAAAGAAAACTATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCACTGAGAAAAACCAATG caatctctattgatgagaaaaggtttcttatgttgttcattccttaatagGCATTGTCTTCAGCAATGGAGAAACATGGAAACAAACTCGGCGTTTCTCCCTCATGGTCTTAAGGTCGATGGGTATGGGAAAGAAAACCATTGAAGACCGAATTCAGGAGGAAATCCTTTATATGTTGGATGCATTGAGAAAAACCAATGgtaagtatccatgtgtgtagtaaacatatggtagagatgatttctgttta #### Cyp2c70_ID7878_2 --> 0 - 1 Original Alignment CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAggtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa Alignment from CESAR CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAggtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa Alignment from Spaln_aa2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAGgtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa Alignment from Spaln_nt2Genome CAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagttagCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAGgtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa Alignment from Pairagon CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAGgtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa Alignment from Exonerate_protein2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAGgtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa Alignment from Exonerate_coding2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAGgtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa Alignment from GeneWise CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG tcaccaatgtagcatgtgtggcaaacactatttcttgtgtctaataacagTTAGCAAAAATGTATGGCCCTGTATTTACTGTATACGTGGGCATGAAGCCTACCGTGGTGCTGCATGGGTACAAAGCAATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGTAGAACCAGCCAAGGCCTAGgtcagtccccttgttggggtgcatccagaccagtgcacttgtgagaggaa #### D19Bwg1357e_ID5836_16 --> 2 - 2 Original Alignment gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacaggcTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCaggtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc Alignment from CESAR gtTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCag ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacaggcTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCaggtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc Alignment from Spaln_aa2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacagGCTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCAGgtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc Alignment from Spaln_nt2Genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacagGCTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCAGgtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc Alignment from Pairagon GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacagGCTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCAGgtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc Alignment from Exonerate_protein2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacagGCTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCAGgtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc Alignment from Exonerate_coding2genome GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacagGCTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCAGgtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc Alignment from GeneWise GTTGTTTTGCAAAAACCCTTGTAGAGCGTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAG ttgcaaaaacccttgtagagcgtgtcggctgctgcttttccccctaacagGCTGTTTTGCAAAAACCCTTGTAGAGCGTGTCGGTATGAAGAACCTCAAGTCTTGGGCCAGCATCAACCAAGGTGCCATTATTCTCTCCAGgtgaggcgctgggtcctgttacacacacagagacttatcttcactttttc #### D19Bwg1357e_ID5839_13 --> 0 - 2 Original Alignment GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACaggtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc Alignment from CESAR GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACaggtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc Alignment from Spaln_aa2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc Alignment from Spaln_nt2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc Alignment from Pairagon GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc Alignment from Exonerate_protein2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc Alignment from Exonerate_coding2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc Alignment from GeneWise GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG caacaaactggtaacctagttaccaacaagctacattgtttcctatacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAATGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagtgcgcggtcattgcttcaaaaaatcgcctaaccacatgctccccc #### D19Bwg1357e_ID5841_11 --> 0 - 0 Original Alignment GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca Alignment from CESAR GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca Alignment from Spaln_aa2Genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca Alignment from Spaln_nt2Genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca Alignment from Pairagon GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca Alignment from Exonerate_protein2genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca Alignment from Exonerate_coding2genome GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca Alignment from GeneWise GACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAAT tggtagacttactgggtacctgtatacaaccctgttacttttctcctcagGACAGGAAAGTGATTGTGAAAACAATGAAGACATATGTGGAGAAGGTTGCGAATgtaagtggtgcaattggatgttccctaggatcttgctgacttaatgtcca #### D19Bwg1357e_ID5843_9 --> 1 - 0 Original Alignment gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcaggGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg Alignment from CESAR gGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcaggGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg Alignment from Spaln_aa2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg Alignment from Spaln_nt2Genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg Alignment from Pairagon GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg Alignment from Exonerate_protein2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg Alignment from Exonerate_coding2genome GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg Alignment from GeneWise GGAAGCTGTGATTAAGCACTCACTCGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCA ggtcattttacctgcaagagctaacactggtgcctcttcctcaccttcagGGAAGCTGTGATTAAGCACTCACTTGTTCATAAAGTATTCTTGGACTTTTTTACCTACACACCACCAAAACCTCGATCAgtcagttcttgctttctgtcctttaaagaagtcattaaaggtcctgatgg #### D19Bwg1357e_ID5851_2 --> 2 - 1 Original Alignment agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg acactttaccaagtacccaaatttgcattgttgttccccctcccctggagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTggtaaggtcattactgaggtttcctggccaagacacacataactctaggca Alignment from CESAR agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg acactttaccaagtacccaaatttgcattgttgttccccctcccctggagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTggtaaggtcattactgaggtttcctggccaagacacacataactctaggca Alignment from Spaln_aa2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG acactttaccaagtacccaaatttgcattgttgttccccctcccctggagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaggtcattactgaggtttcctggccaagacacacataactctaggca Alignment from Spaln_nt2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG acactttaccaagtacccaaatttgcattgttgttccccctcccctggagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaggtcattactgaggtttcctggccaagacacacataactctaggca Alignment from Pairagon AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG acactttaccaagtacccaaatttgcattgttgttccccctcccctggagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaggtcattactgaggtttcctggccaagacacacataactctaggca Alignment from Exonerate_protein2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG acactttaccaagtacccaaatttgcattgttgttccccctcccctggagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaggtcattactgaggtttcctggccaagacacacataactctaggca Alignment from Exonerate_coding2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG acactttaccaagtacccaaatttgcattgttgttccccctcccctggagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaggtcattactgaggtttcctggccaagacacacataactctaggca Alignment from GeneWise AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG acactttaccaagtacccaaatttgcattgttgttccccctcccctggagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCGACAAAACCTGGCAAGAAGGGTGTGAAACAGTTCAAGAACAAGCCACAAGGGGGCAAGGGACCAAGGGATAAATTTCATAGAGCAAATAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaggtcattactgaggtttcctggccaagacacacataactctaggca #### D19Ertd737e_ID13182_6 --> 0 - 2 Original Alignment CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGgg ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGgggtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt Alignment from CESAR CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGgg ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGgggtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt Alignment from Spaln_aa2Genome CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGGG ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGGGgtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt Alignment from Spaln_nt2Genome CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGGG ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGGGgtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt Alignment from Pairagon CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGGG ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGGGgtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt Alignment from Exonerate_protein2genome CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGGG ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGGGgtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt Alignment from Exonerate_coding2genome CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGGG ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGGGgtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt Alignment from GeneWise CTCGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGAAGAAACTGGCATGGGGG ttgtataatctatgtgtatgtaccaattctgcgtccttttctttctctagCTTGGTGTAAAAATTGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGCCAAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAGAAGGAAAAACTGGCATGGGGGtaagctcagttaacagtaaaggacagtctcctgggctagagagctgggt #### D19Ertd737e_ID13188_5 --> 0 - 0 Original Alignment TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt Alignment from CESAR TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt Alignment from Spaln_aa2Genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt Alignment from Spaln_nt2Genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt Alignment from Pairagon TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt Alignment from Exonerate_protein2genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt Alignment from Exonerate_coding2genome TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt Alignment from GeneWise TCAGGCCTTGAGAAGAGGATTGACCAGGCTGTGGAGGAGTGGGATGTTGAGAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCGAGAG ataggttatatctcttgcaaaacatgcggcttaccatttctctgtggcagTTGGGCCTTGAAAAGAGAGTTGACCAGGCTGTAGAGGAGTGGGATGCTGAGAAGGCAGAAGAACTCAGCAACCAGCTGGCTACTCGAGAGgtaatgcagacttccccttgccatctgtcacgatacaattcccccatttt #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGggtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGggtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAAGGAATCTCA tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGGTACGTACTCTTAAATCCTTAAATCTAGcttaggatgttggataggctta Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta #### Dagla_ID2756_14 --> 1 - 2 Original Alignment tGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCag tcttattatgttcattccccccatttttacctcctgaccctggtccctagtGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCaggtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact Alignment from CESAR tGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCag tcttattatgttcattccccccatttttacctcctgaccctggtccctagtGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCaggtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact Alignment from Spaln_aa2Genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcttattatgttcattccccccatttttacctcctgaccctggtccctagTGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCAGgtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact Alignment from Spaln_nt2Genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcttattatgttcattccccccatttttacctcctgaccctggtccctagTGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCAGgtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact Alignment from Pairagon TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcttattatgttcattccccccatttttacctcctgaccctggtccctagTGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCAGgtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact Alignment from Exonerate_protein2genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcttattatgttcattccccccatttttacctcctgaccctggtccctagTGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCAGgtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact Alignment from Exonerate_coding2genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcttattatgttcattccccccatttttacctcctgaccctggtccctagTGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCAGgtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact Alignment from GeneWise TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcttattatgttcattccccccatttttacctcctgaccctggtccctagTGAGGATGCTATGGAATACTCAAAAGAGTTTGTGACTGCTGTAGTTCTGGGCAAAGACCTTGTTCCCAGgtgaggtcacctcccttgccatacactctgacctcatctcaatccaaact #### Dagla_ID2762_8 --> 0 - 2 Original Alignment CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCtcgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt Alignment from CESAR CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCtcgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt Alignment from Spaln_aa2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCTCgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt Alignment from Spaln_nt2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCTCgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt Alignment from Pairagon CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCTCgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt Alignment from Exonerate_protein2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCTCgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt Alignment from Exonerate_coding2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCTCgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt Alignment from GeneWise CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC cttctggctcgatagtgtaaggtcacaagcatctgacatatttcttacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTACATGCTCTTGGCCCTGGCTGCCTATGGCTGGCCTATGTACTTGATGAGGAAGCCCACCTGTGGCCTCTGTCAGCTTGCACGGTCCTGCTCgtatacccttgcttgcttcctcattggagacttactggtagcacctcggt #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccggggtctgtgagcaggcctatgtgcccccagCTGGACTCTCTGTGGTCAGCAGCACAGGAATTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCTTACTAAAGCAGTCAAGgtgagtgcattcagctataattgagctgtacaatcaagtacccaaagctc #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTGGTG---TATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTGGTG---TATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTAT---CGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCAC---TGGTGTATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGC---AGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGT---ATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGC---AGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTAT---CGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTAT---CGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTAT---CGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat #### Dak_ID2910_3 --> 2 - 1 Original Alignment gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg cagttaacagctgttaactcaactcagctggggctgtcttatccctacaggtTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag Alignment from CESAR gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg cagttaacagctgttaactcaactcagctggggctgtcttatccctacaggtTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag Alignment from Spaln_aa2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagttaacagctgttaactcaactcagctggggctgtcttatccctacagGTTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag Alignment from Spaln_nt2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagttaacagctgttaactcaactcagctggggctgtcttatccctacagGTTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag Alignment from Pairagon GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagttaacagctgttaactcaactcagctggggctgtcttatccctacagGTTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag Alignment from Exonerate_protein2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagttaacagctgttaactcaactcagctggggctgtcttatccctacagGTTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag Alignment from Exonerate_coding2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagttaacagctgttaactcaactcagctggggctgtcttatccctacagGTTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag Alignment from GeneWise --TTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagttaacagctgttaactcaactcagctggggctgtcttatccctacagGTTTTATTGGTAAAGGAATGCTTACAGGTGTCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtaggttgtgcatgtacaggagaatgtggtggatgggttgtgttggggag #### Dclre1a_ID12125_2 --> 2 - 1 Original Alignment aaTGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCg cagagtgcttttcagattctctttctacttcctttgtgttttctctttagaaTGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTT---ACTGCC---------TCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCTCC---TCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAG---AAGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTggtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg Alignment from CESAR aaTGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCg cagagtgcttttcagattctctttctacttcctttgtgttttctctttagaaTGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTTACTGCC------------TCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCTCC---TCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAG---AAGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTggtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg Alignment from Spaln_aa2Genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG cagagtgcttttcagattctctttctacttcctttgtgttttctctttagAATGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTTACTGCC------------TCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCTCC---TCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAG---AAGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg Alignment from Spaln_nt2Genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG cagagtgcttttcagattctctttctacttcctttgtgttttctctttagAATGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTTACTGC------------CTCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCT---CCTCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAGA---AGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg Alignment from Pairagon AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG cagagtgcttttcagattctctttctacttcctttgtgttttctctttagAATGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTTACTGC------------CTCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCT---CCTCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAGA---AGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg Alignment from Exonerate_protein2genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG cagagtgcttttcagattctctttctacttcctttgtgttttctctttagAATGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTTACTGCC------------TCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCTCC---TCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAG---AAGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg Alignment from Exonerate_coding2genome AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG cagagtgcttttcagattctctttctacttcctttgtgttttctctttagAATGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTTACTGCC------------TCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCTCC---TCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCA---GTGAGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAG---AAGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg Alignment from GeneWise AATGTCCCGAGGGTTTGCTATGTACTTCCACAATTCCTTCCCATTATAAGAAATACACTCACATCCTGCTCGCTCAAAGTCGAGATAGCAAGGAGCCTCTGGGCAGCCCCTCGGATGCATTGGCTGGGCTGTTTGCTGCAGCAGCGCCAGGTTCTCCTTGTAACCTTGAGGAAAGACGCTCTATGACTCTGAAAACTGAGAACTTAAGAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACATCTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGTTCTCAAACATCGCCAGTTCCACAGTGTGCAGAGTTCGTCAAGAGAGACCAGCTGGTGGGAGGTGGATCGCCTCTTGCTGAGGTTGCATTAAACAGCCAAAGCAAGTCAGGGAGTATGGGTTTGCCATTGCCAGAAAATGACACTGACAGCTGTGAGATCTCTTATTCTCCGCTGCACAGTGATGAAGAGACTTACGACATAGACCAAGAGCTGGATGATTCACAGCAGGAACTATTTTTTACCCAAAGCTCTAAAGACAGCAGCCTAGAAGAAGATGGCTCTGCCATATTTGAAAACCTTCATGGTCCCTCCCCAAAGGAAGCAGAGGGGATCCGGCCCACAGCGAAGAGCCTGGTTGCCCAGGCTAGGTGTAGTGCACCGAGTGAAGGCAGTACACTAAGTGACTCTTTTCTGCTTCTCTTCTACACCTCGAACAGGCTTTCCCAAGAAGACCTACCACACACAGATGCGGCCTTCCACTTGCTTTCACCTGCCTTGGCAGTGGGAGGTGCTGCTTCTAATTATCAGACCAGTAAGGCCAAGCTCGACGAGCCAGAAAAATTCCTCTCACTTGCATCAAGTCATCAGCAACAGAAAATTGAAACATCAGCTGTTGGCAATCAGACTTCTCTGCCGTTACTTACAAGAGCCAGGTCAAAGCCACTTGAAAAGGAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGTCAGACCAGAGGATCACCGCGCAAGGGCTTGGGTGCTCCAGGGGCTAACTGTGCCTGCAGGAATGCACAGAAGCGCTCTAGCATGCCTCTTGACAAGCCCTTGGGCACATCGCCTTCCAGTCCCAAGTGCAGCCCGAGCCAACCGTCTAAGAAAGTAATGAAGCAAATGGATATAGGCGTGTTTTTTGGACTACCACCCAAAAGACAAGAGACGTCACTGAGGGAAAGCGCATCAGAAGGGCCCAATGTCAGTCCAGTTGTGAGTCCCAACCAAAAGAGGCCCCGGTTGTGCAAGAGGAAAGCCCAGAGCTCTCTGAGTGACTTAGAGTTTGATGCAAAGAATTTAAATGAGAGTCAGCACTCTGTGGGACTGTCTGGAGAGAAGCGGCAACATCGAAGAAAGAGACATAAAACGTCAAATTCACCACGGGAAGGACCATGCCAGAGAAGGTCAGGTCACCTCATGAACAACCCAGAGTTGGGACCAGTCATCCTCAGCAAAGGCAAAGCCTTCGTGAGACGGACTCGTGGCAGGACGCAGAGAGGGAACATGAACATTTCAGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCGTTCTATAAGAGAATCCCCG cagagtgcttttcagattctctttctacttcctttgtgttttctctttagAATGTCCTGAGGGGTTGTTATGTACCTCCACAGTTGCTTCTCATTATAAGAAATACACTCACATCCTGCTTGCTCAAAGTCGTGATAGCAAGGAACCACTTGGTAGCCCCTCAGATGCATTGGCTGGGTTGTTTACTGCC------------TCCCCCTGTAACCTTGAAGAAAGACGCTGTATGGCTCTTAAAACAGAGAACTTAAAAAAAGTCTCAGATCACTCTTTGTTGATGATGCAGTATCTAGAAACAACTCAGCCTTCAGCTGAAATCAACAGGAAGAATGTCTCTTCCCCATGCTCACAAACTTTGCCTGTTCCCCAGTGTGCAGAGTTTGTGAAGAGAGATCAGCTGGTGGGGGGAGGATCACCTCTTGCTGAGGTCGCATTAAACAGCCAAAGCAAGTCTGGCAGTATGGGATTGCCATTGCCAAAAAATGACACTGACGGTTGTGAAACTTCTTATTCCCCACTGCATAGTGATGATGAAACTTATGACATAGACAAAGAGCTGGACGATTCACAGCAGGAGCTATTCTTCACCCAGGGTTCTAAAGACAGTAGCCTAGATGAAGATGGCTCTGCCATATTTGAAAATGTGCATGGTCCCTCTCCAAAGGAAGCAGAAGGGATCCGGCCCATGGCAAAGAGCCTGGTGGCTCTAGCTAGGTGTAGTGCACCAAGTGAAGGCAGTACTCTAAGTGACTCCTTTCTGTTGCTCTTCTATACGGCAAATAGGCTTTCCCAAGAAGATCTGCCTCATGCAGATGTGGCTGTCCACTTGCTTTCACCTGCTTTGGCAGTGGGAAGTGCTGCTTCAAACTATCAGACTAGTAAGGCCGAGCTTGATGAGCCAGAAAAATTCCTCTCACTTGCGGCAAGCCATCAGCAACAGAGAATTAAAACATCAGCTGTTGGCAATCAGACTTCTTTGCCCTTACTCACAAGAGCCAGGTCAAGGCCACTTGACAAGAAGGGAGGCAAGTGTCTGCCTTTGCATCCAACCCAAAGCGAGACCCGGGGATCACCACGCAAGGGATTGGGTGCTCCAGGGGCTAACTGTGCTTGCAGGAATGCACAGAAGCGCTCCAGTATGCCTCTTGACAAGCCCTTGGGCACCTCC---TCTGGTCCCAAACACAGTTCAAGCCAACCATCTAAGAAAGTAATGAAGCAGATGGATATCGGCGTGTTCTTTGGATTACCACCCAAAAGACAAGAGACTGCACTGAGGGAAAGTGCATCAGATGGGCCCAATGTCAGTCCAGTG---AGTCCCAACCAAAAGAGGCCACGGTTGTGCAAAAGGAAGGCCCAGAGCTCTCTGAGTGACTTGGAGTTTGATGCAAAAAACTTAAATGAG---AAGCACTCTGTAGGACTGTGTGGAGAGAAGCAGCAACATCGAAGGCGGAGGCATAAAACATCTAATTCACCACAGAAAGGACCATGCCAGAGAAGGTCAGGTCATCTAATGAACAACCCAGAGTTGGGACCAGTTATCCTCAGCAAAAGCAAAGCCTTAGTGAGACGGACTCATGGCAGGACGCAAAGAGGGAATATGAACATTTCTGAGTCCTCTGGTGCAGGGGAAGTGAGAAGAACATGTCCATTCTATAAGAGAATCTCTGgtgagctggattactccgcatcagtatatacagtagcaactgtcacatgg #### Ddb1_ID2920_5 --> 0 - 1 Original Alignment GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAggtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct Alignment from CESAR GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAggtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct Alignment from Spaln_aa2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAGgtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct Alignment from Spaln_nt2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAGgtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct Alignment from Pairagon GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAGgtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct Alignment from Exonerate_protein2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAGgtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct Alignment from Exonerate_coding2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAGgtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct Alignment from GeneWise GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTC---------AACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccccacagcctggggcctaaccaatcccctttgtgattccccttcagGATCCTCAGGGGCGACACGTTAAAACTTACGAGGTGTCTCTTCGAGAGAAAGAGTTCAAAGAGTTCAACAATGGCCCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCAATAGTAATGGCAGgtaaggtgcttagatgggaggtcccgttaggatgtagttctctcccctct #### Ddb1_ID2921_6 --> 2 - 0 Original Alignment tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagttCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat Alignment from CESAR tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagttCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat Alignment from Spaln_aa2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagTTCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat Alignment from Spaln_nt2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagTTCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat Alignment from Pairagon TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagTTCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat Alignment from Exonerate_protein2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagTTCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat Alignment from Exonerate_coding2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagTTCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat Alignment from GeneWise TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG gaaaagggtcccttttaattctgaatatctggacggggtgtgtgtttcagTTCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCAATTACCTATCATAATGGTGATAAATACCTAGCAATTGCTCCTCCTATCATTAAGgtaagtaaatattttactatctatgttgccttctgttccatctgggccat #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagtCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTaggtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagtCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTaggtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaataggaccctagaattctgactgcgttgccttcctagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCACATCCGCACAGTCCCCCTCTATGAGTCTCCTAGgtaggtctagacctgagaagcagaagagggggagggtcagtgatgggtca #### Ddb1_ID2933_18 --> 1 - 0 Original Alignment gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaaggAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata Alignment from CESAR gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaaggAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata Alignment from Spaln_aa2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaagGAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata Alignment from Spaln_nt2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaagGAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata Alignment from Pairagon GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaagGAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata Alignment from Exonerate_protein2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaagGAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata Alignment from Exonerate_coding2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaagGAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata Alignment from GeneWise GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG tcatatcataatttgtccagtggttccattacttttgtttcttttaaaagGAAAATTTGCTACGAGGAAGTGTCCCAGTGCTTTGGGGATCTATCCAGTCGCATTGAGGTTCAAGATAGTTGTGGGGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaagtgcagtggaggaggatgacagtggagctagcaaacacttctcata #### Dmrt1_ID5475_2 --> 0 - 1 Original Alignment GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAggtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat Alignment from CESAR GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAggtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat Alignment from Spaln_aa2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAGgtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat Alignment from Spaln_nt2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAGgtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat Alignment from Pairagon GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAGgtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat Alignment from Exonerate_protein2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAGgtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat Alignment from Exonerate_coding2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAGgtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat Alignment from GeneWise GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG ccaatggtagagctgttctaaagtgtgttttctcttttgtgccttgtcagGTGGGTCTGAGAAGACAGCAGGCGCAGGAAGAAGAACTTGGCATCAGCCACCCAATCCCTCTGCCAAGTGCAGCTGAGCTCCTGGTTAAAAGAGAGAATAATGCCAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGCACCCCAACCCCTGCTGCCTCAGgtgagtaaaggatgtggtttcctgtaggacccaaccaagggaagcaagat #### Dnajc4_ID1965_3 --> 0 - 2 Original Alignment CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACag tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACaggtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc Alignment from CESAR CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACag tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACaggtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc Alignment from Spaln_aa2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACAGgtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc Alignment from Spaln_nt2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACAGgtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc Alignment from Pairagon CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACAGgtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc Alignment from Exonerate_protein2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACAGgtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc Alignment from Exonerate_coding2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACAGgtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc Alignment from GeneWise CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTATACGCAACAGACACACAG tctgcatccatgtccatttgagtcgcataatacgaggaaatgtcttgcagCTGCGCCCTGATCGAGACCCGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAGCTGAACGAG------CGTGTGCTCAGCCATGAGGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCAGGGAGCACTGCTGAGCCTAAGTATACACAACACACTCACAGgtaaggtacaaagggcacaacataattttgccctcaacttggtagtaggc #### Dnmbp_ID8853_13 --> 0 - 1 Original Alignment CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGAC---AGGggtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg Alignment from CESAR CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAg tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGAC---AGGggtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg Alignment from Spaln_aa2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGAC---AGGGgtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg Alignment from Spaln_nt2Genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGACA---GGGgtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg Alignment from Pairagon CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACGGAG tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGACA---GGGgtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg Alignment from Exonerate_protein2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAA tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGACAGgggtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg Alignment from Exonerate_coding2genome CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAA tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGACAGgggtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg Alignment from GeneWise CCAAGCTACATGCTGCAGTCGGAAGAGCTGCGGAGCTCCCTGCTGGCGAGGTACCCGCCGGAAAAGCTCTTCCACGTCCAGCGGAACTTCAACGCTGCGCAGGACTTGGATGTCTCCCTTTTGGAAGGCGACCTGGTGGGCGTGATCAAAAAGAAAGACCCCATGGGCAGCCAGAACCGCTGGCTCGTGGACAACG tagcaattggtaaacatccaaaagatctcttcacctgtcccatgcctcagGCAAGTTACACAGTGCAGTCAGAAGAGCTACGGAGCTCCCTGCTGGCAAGGTACCCATTGGAGAAGCTCTTCCATGTCCAGCGGAACTTTATTGCTGTCCAGGACTTGGATGTTTCTCTTTTGGAGGGTGACCTTGTGGGTGAGATCAAAAAGAAAGACTCCATGGGCAGCCAGAACCGTTGGCTAGTGGACAGGGgtgggtctcagactcagcatgtcttttgagttaattcactccgaacggtg #### Dnmbp_ID8856_10 --> 0 - 0 Original Alignment GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc Alignment from CESAR GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc Alignment from Spaln_aa2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc Alignment from Spaln_nt2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc Alignment from Pairagon GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc Alignment from Exonerate_protein2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc Alignment from Exonerate_coding2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc Alignment from GeneWise GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT ggttggaaagtcccccacattgctcactatcttttgttctctcaaatcagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTTGAGAAAGTGCATCAGTACATCAGTGACCAGCTGTTTACACGATTCgtgggcagtattgctctactacccccatgaccccccatccacttgtctcc #### Dnmbp_ID8865_3 --> 2 - 1 Original Alignment gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagaaGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCCA------CCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACA---ACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAggtgagtatgactataaatacacaaaggttttactgcatgagaaactccct Alignment from CESAR gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagaaGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCCA------CCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACA---ACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAggtgagtatgactataaatacacaaaggttttactgcatgagaaactccct Alignment from Spaln_aa2Genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagAAGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCCA------CCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACA---ACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtgagtatgactataaatacacaaaggttttactgcatgagaaactccct Alignment from Spaln_nt2Genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagAAGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCC------ACCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACAC---AACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtgagtatgactataaatacacaaaggttttactgcatgagaaactccct Alignment from Pairagon GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagAAGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCC------ACCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACA---ACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtgagtatgactataaatacacaaaggttttactgcatgagaaactccct Alignment from Exonerate_protein2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagAAGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCCA------CCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACA---ACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtgagtatgactataaatacacaaaggttttactgcatgagaaactccct Alignment from Exonerate_coding2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagAAGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCCA------CCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACA---ACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtgagtatgactataaatacacaaaggttttactgcatgagaaactccct Alignment from GeneWise GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattcttgttaatgttcttgtcccattcaactccattcagAAGACTTGGTGATTCTTGACGACAGTGCTCCAACTGCAGGATGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCGTGTGCCCTCATGGGCCTTTCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTGATTACAATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTATTTTTCCAGAAGGCTTTGTAGAAGTGCTGGGGCCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTAGGAGATAGAATTCAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTCTTTCCCCATCACTTTGTAAAGTTATGTCCTAGCAATAGGTCTGAGGAAACCACAGCTCAGCCCCAGGAAAGTAGTTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCTGTGGTGGAGGAAGCGAGACAGGAATCATGGGATTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCACCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAGCCA------CCCATTCATCCCAAGGTACAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAATCCAGAACCCGAGACTACTCCAGCTTGCCTCCTAGAAGACCATATGCCCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCAAGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACCGCAGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAACAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGCACAGAGCCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAGGCATTCCCCGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACAACACCAATTTCTTCCCACTTGCTAGTTGACCAGAGCCCAAAACCTGTACCTACCTTGGTTGTTCGGCCCTCCCGGCCAGCCTCTCTGCCTCCACCTGCCCAGCAGAGGATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCGGTCTGGGAGGCCCCGGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGGACATTTCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACA---ACCAGGGCTCAGGAAGAGCTGAACTTGCTGTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACTCTAAGATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtgagtatgactataaatacacaaaggttttactgcatgagaaactccct #### Dock8_ID5379_4 --> 1 - 2 Original Alignment aGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGaa tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagaGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGaagtaagattattccctctttatatacataaacctctgttttcttaaatata Alignment from CESAR aGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGaa tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagaGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGaagtaagattattccctctttatatacataaacctctgttttcttaaatata Alignment from Spaln_aa2Genome AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagAGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGAAgtaagattattccctctttatatacataaacctctgttttcttaaatata Alignment from Spaln_nt2Genome AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagAGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGAAgtaagattattccctctttatatacataaacctctgttttcttaaatata Alignment from Pairagon AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagAGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGAAgtaagattattccctctttatatacataaacctctgttttcttaaatata Alignment from Exonerate_protein2genome AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagAGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGAAgtaagattattccctctttatatacataaacctctgttttcttaaatata Alignment from Exonerate_coding2genome AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagAGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGAAgtaagattattccctctttatatacataaacctctgttttcttaaatata Alignment from GeneWise AGTTGAACTGGATCCTCACGTCAGAGACTGTGTTCAGACCTATATTCGAGAGTGGCTGATTGTAAACCGGAA tgcataaagtaccagtgcttggtgaagcacctctcagctggcctttccagAGTTGAACTGGACCCTCATGTCAGAGACTGTGTACAGACGTATATTCGAGAGTGGCTGATTGTAAACCGGAAgtaagattattccctctttatatacataaacctctgttttcttaaatata #### Dock8_ID5382_5 --> 1 - 0 Original Alignment aAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagaAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca Alignment from CESAR aAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagaAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca Alignment from Spaln_aa2Genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagAAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca Alignment from Spaln_nt2Genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagAAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca Alignment from Pairagon AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagAAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca Alignment from Exonerate_protein2genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagAAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca Alignment from Exonerate_coding2genome AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagAAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca Alignment from GeneWise AAACCAAGGAAGTTCAGAGTTTTGCAGCTTTAAAAAGACGGGATCTCGCAGAGATTTTCAGAAGACGCTTCAGAAACAGACGTTTGAGTCAGAAACCTTGGAGTGCAGTGAACCGGACACTCAG ctctactggccctcatttcccccaaattagtttctgttcattttccacagAAACCAGGGGAGTCCAGAGTTTTGCAGCTTTAAAAAGACAGGGTCTCACAGAGATTTTCAGAAGATGCTTCAGAAGCAAACATTTGAGTCAGAAACCCTGGATTGCAGTGAACCAGACACTCAGgtgggttcctgtcagtaaacatggttacaaggtttctgatgtaacattca #### Dock8_ID5397_18 --> 0 - 0 Original Alignment TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta Alignment from CESAR TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta Alignment from Spaln_aa2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta Alignment from Spaln_nt2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta Alignment from Pairagon TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta Alignment from Exonerate_protein2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta Alignment from Exonerate_coding2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta Alignment from GeneWise TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgtcagccactcatactttgtttttcttttactatagTGGCTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCAGTCACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaaggagcaccactttagctgaggtaaccagccctgccctgctgctgta #### Dock8_ID5402_23 --> 0 - 0 Original Alignment ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat Alignment from CESAR ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat Alignment from Spaln_aa2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat Alignment from Spaln_nt2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat Alignment from Pairagon ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat Alignment from Exonerate_protein2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat Alignment from Exonerate_coding2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat Alignment from GeneWise ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG gttctgctcatgatctccaggaatgcctggtaactgctctctttgtccagATTGCTGATCGCAACTGCACCCGGATGTCTTACTATTGCCCTGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgcatagctgggtggaaaaagagtagcttcaccccaagggaggcttaat #### Dock8_ID5409_28 --> 0 - 2 Original Alignment AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATgg tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATgggtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc Alignment from CESAR AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATgg tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATgggtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc Alignment from Spaln_aa2Genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATGGgtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc Alignment from Spaln_nt2Genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATGGgtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc Alignment from Pairagon AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATGGgtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc Alignment from Exonerate_protein2genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATGGgtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc Alignment from Exonerate_coding2genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATGGgtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc Alignment from GeneWise AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tggccagagatttgttacaatagttgcacttgtgtgaccttctcttccagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTGGATGCTGAGGGTGATGGgtaggagtctgttgcctaaaatggaacctgaaatgaaaggtattaacacc #### Dock8_ID5410_29 --> 1 - 1 Original Alignment aATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAg ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagaATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAggtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat Alignment from CESAR aATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAg ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagaATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAggtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat Alignment from Spaln_aa2Genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagAATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAGgtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat Alignment from Spaln_nt2Genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagAATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAGgtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat Alignment from Pairagon AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagAATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAGgtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat Alignment from Exonerate_protein2genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagAATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAGgtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat Alignment from Exonerate_coding2genome AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagAATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAGgtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat Alignment from GeneWise AATTAGCAGAGTACAGAGAAAAGCCGTGAGTGCCATCCACAGCCTTCTGTGTTCTCACGACCTGGATCCACGGTGTCGCAAACCGGAAGTGAAAGTCAAAATCGCCGCCCTTTACCTGCCGTTGGTCGGCATCATTCTGGACGCTCTGCCACAGCTCTATGACTTTACAG ttgtggcttgatatgctgttattggtattctgtcccctttctccctgcagAATCAGCAGAATCCGGAGAAAAGCTGTAAGTGCTGTCCATAGTGTCCTGTGTACTCACGATCTGGATCCACGGTGTCGCAAACCAGAGGTGAAAATCAAAATTGCTGCCCTGTACTTACCATTGGTTGGCATCATCCTGGATGCTCTGCCACAATTATATGACTTTACAGgtaagtgtccattaatgctagtatttcaaaacagtaagccagccttacat #### Dock8_ID5419_37 --> 0 - 0 Original Alignment AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat Alignment from CESAR AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat Alignment from Spaln_aa2Genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat Alignment from Spaln_nt2Genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat Alignment from Pairagon AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat Alignment from Exonerate_protein2genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat Alignment from Exonerate_coding2genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat Alignment from GeneWise AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG gcttaccaggtacccactgactcttttttgtgtttacttttaacttacagAACTTTGCAAGGGTTAAGATGCAAGTGACCATGGCACTGGCATCCCAGGTAGGCAAAGCACCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGAACAATATTGGCCTACTCAGAGGAGGACATGGCCATGCAGACAACTCCGTTCCCCATGCAGgtgagcccagaagatggcctaagccttttcatggatttgaaattaaccat #### Dock8_ID5421_39 --> 1 - 0 Original Alignment aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagaATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCCA---GGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga Alignment from CESAR aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagaATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCCA---GGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga Alignment from Spaln_aa2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagAATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCCA---GGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga Alignment from Spaln_nt2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagAATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCC---AGGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga Alignment from Pairagon AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagAATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCC---AGGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga Alignment from Exonerate_protein2genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagAATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCCA---GGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga Alignment from Exonerate_coding2genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagAATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCCA---GGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga Alignment from GeneWise AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgcattgatgttggaaggttgtccatgacccaacctgttccttgacccagAATTGCGAAGAGTTACCAGGCATCACCTGACCTACGGCTGACCTGGCTCCAGAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCTGGTGCATGCAGCTGCCCTAGTGGCTGAGTACCTGAGCATGCTAGAGGACCACCGATACCTGCCA---GGAAGCATTAGCTTCCAAgtaaggcaggcagtgtatcaaaccaagagtcagattccttcaactttaga #### Dock8_ID5428_46 --> 0 - 2 Original Alignment GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcggtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac Alignment from CESAR GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcggtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac Alignment from Spaln_aa2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac Alignment from Spaln_nt2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac Alignment from Pairagon GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac Alignment from Exonerate_protein2genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac Alignment from Exonerate_coding2genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac Alignment from GeneWise GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG gggggcccttcccacctcctttcttctttaaactttgttttatcttctagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTAGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgtgtaagggggtgatggacactagagtgtaactatatgggggtatcac #### Dpcd_ID9491_2 --> 2 - 1 Original Alignment ggAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTg gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagggAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTggtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga Alignment from CESAR ggAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTg gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagggAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTggtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga Alignment from Spaln_aa2Genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagGGAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTGgtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga Alignment from Spaln_nt2Genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagGGAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTGgtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga Alignment from Pairagon GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagGGAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTGgtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga Alignment from Exonerate_protein2genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagGGAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTGgtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga Alignment from Exonerate_coding2genome GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagGGAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTGgtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga Alignment from GeneWise GGAAGAGGATGGTGCACTATTTGTTCCCAGACGGGAAGGAAATGGCAGAAGAATATGACGAGAAGACCAGTGAACTCCTTG gggaaaatactgaaagacgtatagtgagtaatgctgttgatgcttggcagGGAAGAGGATGGTGCACTATTTGTTCCCAGATGGGAAGGAAATGCTAGAGGAGTATGATGAGAAGACCAGTGAACTTCTTGgtaaatgtgcaccatgaaggggcatgtgtcaatatggagccatgatgaga #### Dpp3_ID737_16 --> 0 - 1 Original Alignment GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAg ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGggtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg Alignment from CESAR GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAg ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGggtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg Alignment from Spaln_aa2Genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGGgtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg Alignment from Spaln_nt2Genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGGgtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg Alignment from Pairagon GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGGgtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg Alignment from Exonerate_protein2genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGGgtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg Alignment from Exonerate_coding2genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGGgtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg Alignment from GeneWise GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatatgggtgagttcccatgaaaactgttttccttggccatgtagGTTCTAAAGTCCACAGGGGATGTTGTGGCAGGGCGGGCCCTATATGAAGGCTATGCAGCTGTTACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTCAACCTAATACATGCCTTGAGGgtgagtagttacactatttgattgaccaacagcacagatcatgaaattgg #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcaggATATTCGGCTATGAGGGAACTGATGCCGAT---GTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcaggATATTCGGCTATGAGGGAACTGATGCC---GATGTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcagGATATTCGGCTATGAGGGAACTGATGCC---GATGTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCT---ACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcagGATATTCGGCTATGAGGGAACTGATGC---CGATGTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcagGATATTCGGCTATGAGGGAACTGATGC---CGATGTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcagGATATTCGGCTATGAGGGAACTGATGCC---GATGTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcagGATATTCGGCTATGAGGGAACTGATGCC---GATGTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta Alignment from GeneWise GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTC---TACACCCCAGAGGCAGCCAACTGGCGACAG acactaaaccctccaaattctcaaggtagatcttctatatcccccagcagGATATTCGGCTATGAGGGAACTGATGCC---GATGTCATCTATGTGAACTGGCTCAATAAGGTTCAAGCAGGCTTGTTGGCTTTGGATTTCCAGCACACCCCAAAGGCAGCCAACTGGCAGCAGgtactgaaacagaacaggtgcatccctcaaggccagacgagcttaaacta #### Dpp3_ID742_11 --> 0 - 0 Original Alignment GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt Alignment from CESAR GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt Alignment from Spaln_aa2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt Alignment from Spaln_nt2Genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt Alignment from Pairagon GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt Alignment from Exonerate_protein2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt Alignment from Exonerate_coding2genome GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt Alignment from GeneWise GACCTGTATATCCGCTGGAAGGGGCCGTCCTTTGATGTGCAGGTGGGGTTACACGAGCTGTTGGGCCATGGCAGCGGCAAGCTCTTTGTACAG tgccatagtgaggttgtggtggtcagcgcaaacaagttttcttctaatagGATCTGTATATCCACTGGAAGGGGCCATCATTTGATGTGCAGGTGGGCTTACACGAGCTATTAAGCCATGGCAGTGGCAAGCTCTTTGTGCAGgtaccaaggtgccgcctgccatgtcctgtatgtaggtgaaggctttcgtt #### Dpp3_ID745_8 --> 1 - 1 Original Alignment tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagtTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAggtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg Alignment from CESAR tTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagtTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAggtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg Alignment from Spaln_aa2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg Alignment from Spaln_nt2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg Alignment from Pairagon TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg Alignment from Exonerate_protein2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg Alignment from Exonerate_coding2genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg Alignment from GeneWise TTACATTGGCTTCATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tctcttccaatgcactctgtgggtttggtattgcacctcgattcactcagTTACATTGGCTTCATTAAAAGCTACCGTGATCCCTTTGGCTCTCAAGGGGAGTTCAAAGgtaatgacttggggagtggaggatttatgtgaacctttctgcttatcagg #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGaggtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGaggtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtaagtagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgagtagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_coding2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaagtagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagccCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACctgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagccCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACctgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT tctgaggtgtgggactaaggcactccaccttgtcctcttctttgtaatagCCCGGGCCCTTGAGCTCTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGACCATGACCACATCTCACCTgtaaggggctgttgccaagctggaagggctttcaaagttacggggtcaga #### Dtx4_ID3397_7 --> 0 - 0 Original Alignment GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat Alignment from CESAR GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat Alignment from Spaln_aa2Genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat Alignment from Spaln_nt2Genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat Alignment from Pairagon GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat Alignment from Exonerate_protein2genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat Alignment from Exonerate_coding2genome GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat Alignment from GeneWise GATGGGAGTTTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCTGGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAG agaggtgggtcatgaactagatgggactagaattatgtttttgatttcagGATGGGAGTCTACAGTGCCCAACATGTAAGACCATTTATGGCGTCAAGACAGGCACCCAACCTCCAGGAAAGATGGAACACCACCTCATCCCCCACTCCTTGCCTGGCCACCCAGACTGCAAGACAATCCGGATTATCTACAGTATCCCCCCTGGCATTCAGgtgagcggagaaaattgcatctgtaggctaatccatcatctaaggttcat #### Dtx4_ID3398_6 --> 0 - 0 Original Alignment GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca Alignment from CESAR GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca Alignment from Spaln_aa2Genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca Alignment from Spaln_nt2Genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca Alignment from Pairagon GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca Alignment from Exonerate_protein2genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca Alignment from Exonerate_coding2genome GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca Alignment from GeneWise GATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAAGGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCTACTGCCTGGTGGCTATGTACAACAATGGGAACAAG caaataccttatttgtgccttgctttacatctcctttttcctctacccagGACTGTACCTTCTGTATGGAGCGTCTCACAACCCATTCAGGCTACAAAAGCCCACAGCCTACAGTCAAGCCTGAGCTGGTGGGAAAACTATCAAGGTGTGGTCATGTCTACCACATTCATTGCTTAGTGGCAATGTACAACAATGGGAACAAGgtgagggtatgatgtgtgtaagtgtgtacaagctgtgttgggtctagaca #### Eef1g_ID2560_2 --> 0 - 0 Original Alignment ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttagACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg Alignment from CESAR ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttagACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg Alignment from Spaln_aa2Genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttagACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg Alignment from Spaln_nt2Genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttagACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg Alignment from Pairagon GACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttaGACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg Alignment from Exonerate_protein2genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttagACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg Alignment from Exonerate_coding2genome ACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttagACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg Alignment from GeneWise GCGGCTGGGACCCTGTACACATACCCTGAAAATTGGAGGGCCTTCAAGGCCCTCATCGCTGCTCAGTACAGCGGGGCTCAGGTCCGCGTGCTCTCCGCACCACCCCACTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCCGGCAAG aagtatatctggggaattgccttgtatacttatgtgctctttttccttag---------ACACTGTACACATACTCTGAAAATTGGAAGGCCTTTAAGGCACTCATTGCTGCTCAGTACAGTGGGGCTCAGGTCCGAGTGCTCTCTGCTCCACCCCATTTCCACTTTGGCCAAACCAACCGCACCCCTGAATTTCTCCGAAAATTTCCTGCTGGCAAAgtaagttgagcagcacgcagtatctctagaagtccaatattgtggagatg #### Efemp2_ID1034_7 --> 2 - 1 Original Alignment atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg ccccagattttccccactacccaaggtccctcattggtcccttcttccagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAggtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga Alignment from CESAR atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg ccccagattttccccactacccaaggtccctcattggtcccttcttccagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAggtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga Alignment from Spaln_aa2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccagattttccccactacccaaggtccctcattggtcccttcttccagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga Alignment from Spaln_nt2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccagattttccccactacccaaggtccctcattggtcccttcttccagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga Alignment from Pairagon ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccagattttccccactacccaaggtccctcattggtcccttcttccagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga Alignment from Exonerate_protein2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccagattttccccactacccaaggtccctcattggtcccttcttccagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga Alignment from Exonerate_coding2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccagattttccccactacccaaggtccctcattggtcccttcttccagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga Alignment from GeneWise ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccagattttccccactacccaaggtccctcattggtcccttcttccagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCAGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggagacaaacagcccagaacttaccatga #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcaggctcccccaccttctccctctttcagatTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACaagtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcaggctcccccaccttctccctctttcagatTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACaagtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagaaTGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGgtgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagaaTGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGgtgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGGTgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGGTgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGGTgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGGTgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGGTgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtcttctaacaaatactcttccatagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAGCAACTTCTGCTGGAGGAGCTTGTGTCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTGGATCAGAAGGAGCGGGTgtaagaatctgagtgtccttggttttgaggagcccccagggtgcaaaact #### Ehbp1l1_ID1229_6 --> 1 - 1 Original Alignment gGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagaGATGATGACATGCAAAGTCTGGCCAGCCTCATGAGCGTGAAGCCTAGTGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCAGACCCGAGGCCCCCAGTCCggtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc Alignment from CESAR gGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagaGATGATGACATGCAAAGTCTGGCCAGCCTCATGAGCGTGAAGCCTAGTGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCAGACCCGAGGCCCCCAGTCCggtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc Alignment from Spaln_aa2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagAGATGATGACATGCAAAGTCTGGCCAGCCTCATGAGCGTGAAGCCTAGTGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCAGACCCGAGGCCCCCAGTCCGgtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc Alignment from Spaln_nt2Genome GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagAGATGATGACATGCAAAGTCTGGCCAGCCTCATGAGCGTGAAGCCTAGTGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCAGACCCGAGGCCCCCAGTCCGgtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc Alignment from Pairagon GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagAGATGATGACATGCAAAGTCTGGCCAGCCTCATGAGCGTGAAGCCTAGTGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCAGACCCGAGGCCCCCAGTCCGgtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc Alignment from Exonerate_protein2genome gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagagatgatgacatgcaaagtctggccagcctcatgagcgtgaagcctagtgatgtgggaaacctggacgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggtccagacccgaggcccccagtccggtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc Alignment from Exonerate_coding2genome gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagagatgatgacatgcaaagtctggccagcctcatgagcgtgaagcctagtgatgtgggaaacctggacgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggtccagacccgaggcccccagtccggtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc Alignment from GeneWise GGATGATGACATGCAGAGTCTGGCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG gcacctgggctcggcagctgtgagcccagaatctcttccctggctctcagAGATGATGACATGCAAAGTCTGGCCAGCCTCATGAGCGTGAAGCCTAGTGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCAGACCCGAGGCCCCCAGTCCGgtcagtttacagttggccagatcgccagtacctgaggtggatacaactcc #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCAGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCGGTC---CTGCTACAAGAAGGCCGTGCCacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCAGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCG---GTCCTGCTACAAGAAGGCCGTGCCacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCAGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCG---GTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCAGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCT---TGCGGTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCAGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCT---TGCGGTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Exonerate_protein2genome attgcaactatctatcttcacacttcccgataggcttctgctggggccaggagtcaaagggacagcggaaagtactggccacagttgatgtcaacttagaccatcacgcagggcctatacctgcccagatctcacttcaactgcggcagaagcccaagtctgtgaaagttgtgcatgctgagcttagcctcacccttgcggtcctgctacaagaaggccgtgccacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from Exonerate_coding2genome attgcaactatctatcttcacacttcccgataggcttctgctggggccaggagtcaaagggacagcggaaagtactggccacagttgatgtcaacttagaccatcacgcagggcctatacctgcccagatctcacttcaactgcggcagaagcccaagtctgtgaaagttgtgcatgctgagcttagcctcacccttgcggtcctgctacaagaaggccgtgccacgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatctatcttcacacttcccgataggcttctgctggggccagGAGTCAAAGGGACAGCGGAAAGTACTGGCCACAGTTGATGTCAACTTAGACCATCACGCAGGGCCTATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTGAGCTTAGCCTCACCCTTGCG---GTCCTGCTACAAGAAGGCCGTGCCACgtgaatacacaccaatcctctactgggcacctgggctcggcagctgtgag #### Ehd1_ID1562_3 --> 2 - 0 Original Alignment gtTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttataggtTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa Alignment from CESAR gtTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttataggtTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa Alignment from Spaln_aa2Genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttatagGTTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa Alignment from Spaln_nt2Genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttatagGTTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa Alignment from Pairagon GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttatagGTTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa Alignment from Exonerate_protein2genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttatagGTTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa Alignment from Exonerate_coding2genome GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttatagGTTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa Alignment from GeneWise GTTATGACTTTGCGGCTGTCCTTGAGTGGTTCGCAGAGCGTGTGGACCGCATCATCTTGTTGTTCGACGCCCACAAGCTGGACATCTCAGACGAGTTCTCAGAAGTCATCAAGGCCCTCAAAAATCACGAGGACAAGATCCGTGTGGTGCTGAACAAGGCTGATCAGATCGAGACGCAGCAGCTGATGCGAGTATACGGGGCCCTCATGTGGTCCCTGGGGAAGATCATCAACACCCCCGAGGTGGTCAGAGTCTACATCGGCTCCTTCTGGTCACACCCACTGCTCATCCCTGACAACCGGAAGCTCTTCGAGGCAGAGGAGCAGGACCTCTTCAAAGACATCCAGTCTCTGCCGAGAAACGCCGCCCTCAGGAAGCTCAATGACCTCATCAAGCGGGCCAGGCTGGCCAAG tgcagtttagatcattgagctgattgagaccttcctttcttcttttatagGTTATGACTTCGCAGCTGTGCTTGAATGGTTTGCAGAGCGAAAGGACCGTATCATCTTGTTATTTGACGCTCACAAGTTGGACATCTCAGATGAGTTCTCAGAAGTCATTAAAGTGCTCAAAAATCATGAAGACAAGATCCGTGTGGTGCTGAACAAAGCTGATCAGATTGAGACACAACAACTGATGCGCGTAGATGGGGCCCTCATGTGGTCCCTGGGGAAGAGTATCAACACTCCTGAGGTGGTCAGAGTTTACATCGGCTCTTTCTGGTCACATCCACTACTTATTCCTGATAACCGAAAGCTCTATGAGGCAGAGAAGCAGGACCTCTTCAAAGAAATTCAGTCTCTGCCAAGAAATGCTGCTCTCAGAAAGCTCAATGACCTCATCAAACGAGCCAGGTTGGCTAAAgtagctcatgtgctccgtgaatagtatctaggaggccaagatatagccaa #### Ehd1_ID1563_4 --> 0 - 0 Original Alignment GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt Alignment from CESAR GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt Alignment from Spaln_aa2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt Alignment from Spaln_nt2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCAA---TGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt Alignment from Pairagon GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCAA---TGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt Alignment from Exonerate_protein2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt Alignment from Exonerate_coding2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt Alignment from GeneWise GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtgggatgccaagctagacccacacagtggttggcatcttctctagGTCCATGCCTATATTATCAGCTCTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTGGGAGAGATCTACCAGAAAATTAAGCAGGAGCACCAAGTCTCCTCTGGTGACTTCCCA---ATGCGTAAGATGCAGgtgggaacgttcagccagcctatccagctgaacttgctgtctggcacttt #### Eif3a_ID13314_16 --> 0 - 1 Original Alignment GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAg ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGggtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca Alignment from CESAR GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAg ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGggtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca Alignment from Spaln_aa2Genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca Alignment from Spaln_nt2Genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca Alignment from Pairagon GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca Alignment from Exonerate_protein2genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca Alignment from Exonerate_coding2genome GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca Alignment from GeneWise GAAAAACTGAAACAGTTTGAAGAGCGCTTAGCAGAAGAAAGGCATAGTCGCCTAGAAGATCGGAAAAGGCAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAGGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAAG ttcatgtctatctagacaaatggcctattattgcgcattgtattaaacagGAAAAACTGAAACAGTTTGAAGAGCGTTTGGCAGAAGAAAGGCACAGCCGCCTTGAAGATCAGGAAAGGAAGCGGAAAGAAGAACGCAAAATAACTTATTACAGAGAAAAAGAAGAAGAAGAGCAGAGGAGGGCAGAGGAGCAGATGCTCAAGGgtgcgtgttgtaactgtaaaactatacaggtgtgggtagtgtgttttgca #### Eif3a_ID13320_10 --> 0 - 0 Original Alignment GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa Alignment from CESAR GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa Alignment from Spaln_aa2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa Alignment from Spaln_nt2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa Alignment from Pairagon GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa Alignment from Exonerate_protein2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa Alignment from Exonerate_coding2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa Alignment from GeneWise GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG cctgtgttatgtagtgatgttcatactattctttctgcttgtcctgctagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgtaagagttataaagaaggatggcagattagtaggaacttgagtactgaa #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagtCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact Alignment from CESAR cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagtCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagTCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagTCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact Alignment from Pairagon CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagTCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagTCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagTCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattaagatttaatgccttcacactggctctgccaagTCTTGCTGTTCATCCTGATGGTGTTCATGTTGCTTCAGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagagcaaggaaggtactgaacagatgggatgagattatgggtcaact #### Eml3_ID2516_15 --> 0 - 0 Original Alignment CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtaagtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa Alignment from CESAR CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtgcgtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa Alignment from Spaln_aa2Genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtaagtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa Alignment from Spaln_nt2Genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtaagtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa Alignment from Pairagon CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtaagtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa Alignment from Exonerate_protein2genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtaagtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa Alignment from Exonerate_coding2genome CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtaagtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa Alignment from GeneWise CCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CCCCTGTTATCCAGgtaagtattgtagccctctcccttcttgcttcttagGGACACACTGATGAGCTCTGGGGCTTGTGTACACATCCATCTCAGAATCGCTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGACGGGGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgccctttatcagcctcaccaaacatgttctgatacgcaaa #### Eno4_ID12831_3 --> 0 - 2 Original Alignment TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCag agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTaggtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat Alignment from CESAR TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCag agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTaggtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat Alignment from Spaln_aa2Genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTAGgtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat Alignment from Spaln_nt2Genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTAGgtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat Alignment from Pairagon TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTAGgtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat Alignment from Exonerate_protein2genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTAGgtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat Alignment from Exonerate_coding2genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTAGgtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat Alignment from GeneWise TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG agtaatatgaatgtttccgatgatgcaggtgtattttataaaccttgcagTACATATGCGCTGTGGCGATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGCCGGAGGCATTGGATGTAGAAGACTCAGAAAGGGCCCAGGCTGTTAAC---------CAGTGGATCAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAACCAGGCAGAGGTAGACCACAGAACTAGgtaagtctttcaactagaaaataataacaaccacatgtaagctccccaat #### Eno4_ID12834_6 --> 0 - 0 Original Alignment GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgtactggatatggaaaccctgtctacaagcagacaaacagtcaaacaata Alignment from CESAR GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgtactggatatggaaaccctgtctacaagcagacaaacagtcaaacaata Alignment from Spaln_aa2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgtactggatatggaaaccctgtctacaagcagacaaacagtcaaacaata Alignment from Spaln_nt2Genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgtactggatatggaaaccctgtctacaagcagacaaacagtcaaacaata Alignment from Pairagon GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgtactggatatggaaaccctgtctacaagcagacaaacagtcaaacaata Alignment from Exonerate_protein2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgtactggatatggaaaccctgtctacaagcagacaaacagtcaaacaata Alignment from Exonerate_coding2genome GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAAAGTGTCGAGTTG---CTTCTGGAAATTCAGAAACAAGTTAACAGAGCGAT ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGGTACTGGATATGGAAACCCTGTCTACAAGCAGACAAACAGTCAAACAATA Alignment from GeneWise GAGCAGCCGTCAACATTCTCTATGCCTTTGCTGATGGGATCTGTACTGAGCTGTGGGAAGTCGTCACCTGGGAAGCTACATTTAATGAAAGAAGTGATTTGTATTCCCAGTCCTGGATTAACAGCCAAACAA ctctcaggagctgttttcttcactcctctctcctctgtgctgccctacagGAGCAGCCATCAACATTCTCTATGCCCTTGCTGATGGGATCCATACTGAGTTGTGGGAAGTCATCCCCTGGGAAACTACATTTAATGAAAGAGGTAATTTGTATTCCTAGTCCTGGTTTAACAGCTAAACAGgtactggatatggaaaccctgtctacaagcagacaaacagtcaaacaata #### Eno4_ID12835_7 --> 0 - 0 Original Alignment AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagAGTGTCAAGTTGCTT---CAAATTCAAAAGCAAGTTAATAGAGCAAAGGAGACAgtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt Alignment from CESAR AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagAGTGTCAAGTTGCTT---CAAATTCAAAAGCAAGTTAATAGAGCAAAGGAGACAgtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt Alignment from Spaln_aa2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagAGTGTCAAG---TTGCTTCAAATTCAAAAGCAAGTTAATAGAGCAAAGGAGACAgtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt Alignment from Spaln_nt2Genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagAGTGTCAAGTTGCTTC---AAATTCAAAAGCAAGTTAATAGAGCAAAGGAGACAgtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt Alignment from Pairagon AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagAGTGTCAAGTTGCTTC---AAATTCAAAAGCAAGTTAATAGAGCAAAGGAGACAgtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt Alignment from Exonerate_protein2genome AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagAGTGTCAAG---TTGCTTCAAATTCAAAAGCAAGTTAATAGAGCAAAGGAGACAgtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt Alignment from Exonerate_coding2genome tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagagtgtcaagttgcttcaaattcaaaagcaagttaatagagcaaaggagacagtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt Alignment from GeneWise AGTGTCGAGTTGCTTCTGGAAATTCAGAAACAAGTTAACAGAGCGATGGAGACG tgggagaggggtgcccaccattgcccaggaccctggccgtttctcttcagAGTGTCAAGTTGCTT---CAAATTCAAAAGCAAGTTAATAGAGCAAAGGAGACAgtttgcaaagaaggctttgggtgatttgtccctcaaatccaccctgagtt #### Eno4_ID12838_10 --> 0 - 0 Original Alignment AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact Alignment from CESAR AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact Alignment from Spaln_aa2Genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact Alignment from Spaln_nt2Genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact Alignment from Pairagon AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact Alignment from Exonerate_protein2genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact Alignment from Exonerate_coding2genome AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact Alignment from GeneWise AGTAAAGGGAAGTACGAAGTGATGGTGGGCACCCACAAAAGCGCAGCTGAGATGGTGGAGCTCTACGTGGACCTGATCAACAAGTATCCTTCCATAATCGCCTTAATTGATCCTTTCAGGAAGGAG tcaggatcttaatccacccgtaatccattcatctctttttttccccccagAGCAAAGCAAAATATGAAGTGATGGTGAGCACTCACAAAACCACAGCTGATATGGTGGAGCCCTATGTGGACCTGATCAACAAGTATCCCTCCATAATTACCTTGACTGATCCTTTTAGGAAGGAGgtattaagggctcaatgtctttgttccagtgcatgctgtctacaccaact #### Entpd1_ID8007_2 --> 2 - 0 Original Alignment atTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcattccatatctccagatTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc Alignment from CESAR atTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcattccatatctccagatTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc Alignment from Spaln_aa2Genome ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcattccatatctccagATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc Alignment from Spaln_nt2Genome ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcattccatatctccagATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc Alignment from Pairagon ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcattccatatctccagATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc Alignment from Exonerate_protein2genome GATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcattccatatctccaGATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc Alignment from Exonerate_coding2genome GATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcattccatatctccaGATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc Alignment from GeneWise GAAGATATAAAGGATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG aggaaactccattgtttcctgaggtcttacaaggcatTCCATATCTCCAGATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTAATCATCCTTGGTTTCACCGCTATCTTGGCTGTGATAGCGTTGATTGCGGTGGGATTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtaagcgaaatttcaaacattatcaattccggactttattatttattatc #### Entpd1_ID8010_5 --> 1 - 0 Original Alignment aATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG actggtcaactactacatcccaagataatcagctaaccacttctacctaggATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCATgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca Alignment from CESAR aATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG actggtcaactactacatcccaagataatcagctaaccacttctacctaggATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCATgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca Alignment from Spaln_aa2Genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG actggtcaactactacatcccaagataatcagctaaccacttctacctagGATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCATgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca Alignment from Spaln_nt2Genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCAG------TGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTC actggtcaactactacatcccaagataatcagctaaccacttctacctagGATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCatgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca Alignment from Pairagon AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG actggtcaactactacatcccaagataatcagctaaccacttctacctagGATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCATgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca Alignment from Exonerate_protein2genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG actggtcaactactacatcccaagataatcagctaaccacttctacctagGATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCATgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca Alignment from Exonerate_coding2genome AATGGAAAGCGAACAATCGGCAGACGAGGTCCTG------GCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG actggtcaactactacatcccaagataatcagctaaccacttctacctagGATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCATgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca Alignment from GeneWise AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCA------GTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG actggtcaactactacatcccaagataatcagctaaccacttctacctagGATGGAGAGTGAACAATCAGCTGATGAGGTCCTGGCCACAGCCACTGTATTGACAAGCCTTAAGAGCACCCCATTTGAGTTTCAAGGTGCCAAGATTATCACTGGACATGAGGAAGGCGCCTATGGGTGGATTACTATTAACTACCTGCTGGGGAGATTCACTCATgtgagcacaatgatagttagacaaaaaatgggtgggcaggtctgttcaca #### Entpd1_ID8011_6 --> 0 - 0 Original Alignment GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacagGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt Alignment from CESAR GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacagGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt Alignment from Spaln_aa2Genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacagGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt Alignment from Spaln_nt2Genome AGGAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacAGGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt Alignment from Pairagon GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacagGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt Alignment from Exonerate_protein2genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacagGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt Alignment from Exonerate_coding2genome GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacagGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt Alignment from GeneWise GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG actctgcaaagaaggatgcccgggaattcctgtgtgtgtcttctccacagGAGCAGAGTTGGATTAGCCTCATCTCAGACAGCCAAAAACAGGAAACCTTTGGTGCTTTAGACCTTGGTGGAACTACCATACAGATCACCTTTGTGCCCCAAAATAGCGCTATAGAGTCCCCACAAAACTCCCTGCAATTCCGTCTTTATGGTGCAGACTACACTGTGTATACACACAGCTTTCTGTGCTATGGGAAGGATCAGGCTATCTGGCAGAAACTAGCCAAGGATGTACAGgtgagcggttcctaaagtctttcaggccccactcacatctggtccactgt #### Entpd7_ID8798_7 --> 2 - 0 Original Alignment agTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagagTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag Alignment from CESAR agTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagagTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag Alignment from Spaln_aa2Genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag Alignment from Spaln_nt2Genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag Alignment from Pairagon AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag Alignment from Exonerate_protein2genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag Alignment from Exonerate_coding2genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag Alignment from GeneWise AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctgttcctatctctgggtaattgtcttgcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGACCTTCCTCCCAAACAGgtaggctactgtacatgggtgtgcagttggtattgctggggcttctgaag #### Erlin1_ID8895_9 --> 2 - 1 Original Alignment aaGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAg tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagaaGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAggtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct Alignment from CESAR aaGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAg tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagaaGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAggtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct Alignment from Spaln_aa2Genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagAAGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct Alignment from Spaln_nt2Genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagAAGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct Alignment from Pairagon AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagAAGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct Alignment from Exonerate_protein2genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagAAGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct Alignment from Exonerate_coding2genome AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagAAGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct Alignment from GeneWise AAGCAGAGAAGATTGCACAAGTAGCAAAAATTCGATTTCAACAGAAAGTGATGGAGAAAGAAACTGAAAAACGCATTTCTGAGATTGAAG tgtactgctgattctaaaatatgttttttagccacctgtccccatcatagAAGCAGGAAAGATTGCACAAGTAGCAAAAATTCGGTTCCAACAGAAAGTGATGGAGAAAGAGACTGAAAAACACATTTCTGAGATTGAAGgtaaagcaatgaaagtgaaatgctgcagttttgaattcctgtactgtcct #### Erlin1_ID8896_8 --> 1 - 1 Original Alignment gGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAg atacatatataggttgagtcctcttcgatccccccccattccttcctcaggGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAggtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga Alignment from CESAR gGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAg atacatatataggttgagtcctcttcgatccccccccattccttcctcaggGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAggtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga Alignment from Spaln_aa2Genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatataggttgagtcctcttcgatccccccccattccttcctcagGGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAGgtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga Alignment from Spaln_nt2Genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatataggttgagtcctcttcgatccccccccattccttcctcagGGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAGgtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga Alignment from Pairagon GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatataggttgagtcctcttcgatccccccccattccttcctcagGGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAGgtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga Alignment from Exonerate_protein2genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatataggttgagtcctcttcgatccccccccattccttcctcagGGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAGgtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga Alignment from Exonerate_coding2genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatataggttgagtcctcttcgatccccccccattccttcctcagGGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAGgtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga Alignment from GeneWise GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atacatatataggttgagtcctcttcgatccccccccattccttcctcagGGAGGCAGATAAGACTAAACTTCTCATAGCTGCACAGAAACAAAAAGTGGTGGAGGAAGACGCTGAGACAGAGCGGAAAAGAGCAGTTATAGgtgagaggatcgtctgtgcacaatggtagagaagcagcttggccccttga #### Erlin1_ID8901_3 --> 0 - 2 Original Alignment ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtgggtcccctttctccttggttcattcacagtgctacagcaacagtact Alignment from CESAR ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtgggtcccctttctccttggttcattcacagtgctacagcaacagtact Alignment from Spaln_aa2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgggtcccctttctccttggttcattcacagtgctacagcaacagtact Alignment from Spaln_nt2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgggtcccctttctccttggttcattcacagtgctacagcaacagtact Alignment from Pairagon ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgggtcccctttctccttggttcattcacagtgctacagcaacagtact Alignment from Exonerate_protein2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgggtcccctttctccttggttcattcacagtgctacagcaacagtact Alignment from Exonerate_coding2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgggtcccctttctccttggttcattcacagtgctacagcaacagtact Alignment from GeneWise ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agaaaaaaaccctatatagaaataaatctactgtctttttttcttttcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtgggtcccctttctccttggttcattcacagtgctacagcaacagtact #### Ermp1_ID6320_10 --> 2 - 0 Original Alignment gtGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtaggtGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg Alignment from CESAR gtGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtaggtGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg Alignment from Spaln_aa2Genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtagGTGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg Alignment from Spaln_nt2Genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtagGTGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg Alignment from Pairagon GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtagGTGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg Alignment from Exonerate_protein2genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtagGTGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg Alignment from Exonerate_coding2genome GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtagGTGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg Alignment from GeneWise GTGCCCAAGGAAGATTTGTTGCTCTGTACCTTTTGGGGATGTTTATCCCATATCTTTACGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCTATCCTGGGAAGAAGCGGGTCGGAGATCCCCCCCGACGTTGTGCTGGCCTCCATCCTGGCTGTCTGTGTGATGATCCTCTCTTCCTATTTT ctgtattgtgccctgtacctcatagaattcaatgtgtgcctattttgtagGTGCCCAAGGAAGATTTGTCACCCTGTACCTGTTAGGTATGTATATCCCATACCTATATGGGCTCTACCTCATCTGGGCTGTGTTTGAGATGTTCACTCCCATCCTGGGAAGAAGTGGTTCAGAGATCCCCCCCGGTGTTGTATTGGCCTCTGTCTTGGCTGTCTGTGTGACAATCCTATCTTCCTACTTTgtacatagatgtggtgggccatcatattatacttccttggcctgagattg #### Ermp1_ID6322_8 --> 2 - 0 Original Alignment atGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagatGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt Alignment from CESAR atGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagatGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt Alignment from Spaln_aa2Genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagATGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt Alignment from Spaln_nt2Genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagATGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt Alignment from Pairagon ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagATGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt Alignment from Exonerate_protein2genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagATGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt Alignment from Exonerate_coding2genome ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagATGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt Alignment from GeneWise ATGCTAATTACATGAGAGACTTCTTGTGTGGACTCGGGATCACATTCATTAGCTGGTTCACTAGCCTTGTTACCGTCCTCATTATAGCAGTGTTCATCTCTCTCATTGGACAGTCTCTCTCATGGTATAACTACTTTTATATTGCCGTTTGCCTGTATGGAACTGCAACAGTCGCCAAAATCATATTCATTCATACTCTTGCAAAAAGATTTTATTATATG ttaactggttttgtaaagtcaatgttagtctcgtttgcctcttcctccagATGCTAATTAC---AGAGACTTCTTGTGTGGTCTGGGGATCACATTCATTAGCTGGTTCACCAGCCTTGTTACTGTCCTCACTATAGCAGTATTCATCTCCCTCATTGGGCAATGTCTCTCCTGGTACAATTACTTCTATATTGCTGTTTGCCTGTATGGAACTGCCACAGTTGCAAAAATCATTTTCATTCATACTCTTGCAAAGAGGTTTTATTATATGgtaggttttgactatgtgttttcagatccaggcacccccgcagagcaagt #### Ermp1_ID6323_7 --> 2 - 1 Original Alignment gtGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGa aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcaggcGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAagtgagtctttccttctacaatctgcttctgaggcagggctggaattttat Alignment from CESAR gtGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGa aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcaggcGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAagtgagtctttccttctacaatctgcttctgaggcagggctggaattttat Alignment from Spaln_aa2Genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcagGCGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAAgtgagtctttccttctacaatctgcttctgaggcagggctggaattttat Alignment from Spaln_nt2Genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcagGCGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAAgtgagtctttccttctacaatctgcttctgaggcagggctggaattttat Alignment from Pairagon GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcagGCGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAAgtgagtctttccttctacaatctgcttctgaggcagggctggaattttat Alignment from Exonerate_protein2genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcagGCGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAAgtgagtctttccttctacaatctgcttctgaggcagggctggaattttat Alignment from Exonerate_coding2genome GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcagGCGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAAgtgagtctttccttctacaatctgcttctgaggcagggctggaattttat Alignment from GeneWise GTGACAACATTTTAGCAGTTCTTAAACACCTGGCTACGTCTGACACCCTGGCTTCTTCGTCTGAGTACCGGCATGGGAGCATGGTGTTCTTCGATGTGCTCGGCCTGCTGGTCATTGCGTACCCTTCTCGTGTCGGCTCCATAATCAACTACATGGTGGTCATGGCCGTGGTTCTGTACCTGGGGAAGAAACTTCTGCGGCCCAAGCACAGGA aagtcaaaattgagtagacttcatagacctctcatcttttgtctctgcagGCGACAACATCTTGGCAGTACTTAAACAACTG---ACATCTGACACCCAGGCTTCTCTGTTTGAGTACCAGCATGGGAGTATGGTGTTCTTTGATGTGCTTCGTCTGCTGGTCATTGCATACTCTTCTCGTGTCGGCCCCATAATCAACTACATGGTTGTCATGGCTGTGGTCCTGTACCTGGGAAAAGAACTCCTGCGGCCCAAGCATAGAAgtgagtctttccttctacaatctgcttctgaggcagggctggaattttat #### Exoc6_ID7362_2 --> 1 - 0 Original Alignment aTCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagaTCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtaagctacccttgataggtgttaggtgttaataatacttcagtacatca Alignment from CESAR aTCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagaTCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtaagctacccttgataggtgttaggtgttaataatacttcagtacatca Alignment from Spaln_aa2Genome ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagATCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtaagctacccttgataggtgttaggtgttaataatacttcagtacatca Alignment from Spaln_nt2Genome ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagATCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtaagctacccttgataggtgttaggtgttaataatacttcagtacatca Alignment from Pairagon ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagATCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtaagctacccttgataggtgttaggtgttaataatacttcagtacatca Alignment from Exonerate_protein2genome ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagATCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtaagctacccttgataggtgttaggtgttaataatacttcagtacatca Alignment from Exonerate_coding2genome ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAGGTGCAGGTTACCGA gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagATCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGGTAAGCTACCCTTGataggtgttaggtgttaataatacttcagtacatca Alignment from GeneWise ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAG gaaagtacctcaccagttgagacatttaccattttctattgtcaatatagATCTGTGTATGATGATCAGCCAAACGCACACAAGAAATTTATGGAAAAGCTAGACGCATGTATCCGCAATCATGACAAGGAAATTGAAAAGATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACAGAACTCCTCAAAGTAAGGGCCGATGCAGAAAAACTGAAGgtaagctacccttgataggtgttaggtgttaataatacttcagtacatca #### Exoc6_ID7365_4 --> 0 - 1 Original Alignment GTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAg catcctccatacatacccctgtccagcgaacatgtgtttctctcttccagGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAggtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac Alignment from CESAR GTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAg catcctccatacatacccctgtccagcgaacatgtgtttctctcttccagGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAggtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac Alignment from Spaln_aa2Genome GTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAG catcctccatacatacccctgtccagcgaacatgtgtttctctcttccagGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAGgtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac Alignment from Spaln_nt2Genome GTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAG catcctccatacatacccctgtccagcgaacatgtgtttctctcttccagGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAGgtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac Alignment from Pairagon GTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAG catcctccatacatacccctgtccagcgaacatgtgtttctctcttccagGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAGgtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac Alignment from Exonerate_protein2genome GTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAG catcctccatacatacccctgtccagcgaacatgtgtttctctcttccagGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAGgtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac Alignment from Exonerate_coding2genome TACCAACCGAAGGTTTCAAGATGCAGGAAAAGAGGTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAG catcctccatacatacCCCTGTCCAGCGAACATGTGTTTCTCTCTTCCAGGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAGgtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac Alignment from GeneWise GTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAG catcctccatacatacccctgtccagcgaacatgtgtttctctcttccagGTTATAATCCAAACAGAAGATATTGTTCGATGTAGGATACAGCAGAGAAACATTACAACTGTAGTGGAGAAATTACAACTATGCCTTCCAGgtaagtcacccccacatctccctcgtatggatgtttgatgtgggtgaaac #### Exoc6_ID7368_7 --> 0 - 0 Original Alignment GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAAT---AACAGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt Alignment from CESAR GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAATAAC---AGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt Alignment from Spaln_aa2Genome GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAATAAC---AGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt Alignment from Spaln_nt2Genome GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAATAA---CAGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt Alignment from Pairagon GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAATA---ACAGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt Alignment from Exonerate_protein2genome GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAATAAC---AGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt Alignment from Exonerate_coding2genome GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAATAAC---AGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt Alignment from GeneWise GCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAG ttgattagtaccagtgcctcaatgatatttattatattcttttattctagGCACAACAACAAAAGAGCTTCAGCTTTGCCCTGCAGGAGCAAAACAATATGAGGTTTGGGAAAAACATGCATGTAAATAAC---AGGATCATCGAAGAGAAAAGTGATATCATACCAAGCCATGCACTGGAAGAAGAGGCAGAGAATGATGAAGAGgtaagtgctctcctcacaccttcactagcggttgctctatcaggtgctgt #### Exoc6_ID7378_15 --> 0 - 2 Original Alignment CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAaggtgagactgttcacattatacctgcctttatggaagtcaaaactttctct Alignment from CESAR CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAaggtgagactgttcacattatacctgcctttatggaagtcaaaactttctct Alignment from Spaln_aa2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAAGgtgagactgttcacattatacctgcctttatggaagtcaaaactttctct Alignment from Spaln_nt2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAAGgtgagactgttcacattatacctgcctttatggaagtcaaaactttctct Alignment from Pairagon CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAAGgtgagactgttcacattatacctgcctttatggaagtcaaaactttctct Alignment from Exonerate_protein2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAAGgtgagactgttcacattatacctgcctttatggaagtcaaaactttctct Alignment from Exonerate_coding2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAAGgtgagactgttcacattatacctgcctttatggaagtcaaaactttctct Alignment from GeneWise CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG tactgtgaaaccacttagtttaatctttcatttcactgtctcctaaaaagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAATTTTCAGAGTCACTACGCCGAAGgtgagactgttcacattatacctgcctttatggaagtcaaaactttctct #### Exoc6_ID7381_17 --> 0 - 0 Original Alignment CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgcag---CTGCAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa Alignment from CESAR CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgcagCTG---CAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa Alignment from Spaln_aa2Genome CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgcagCTG---CAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa Alignment from Spaln_nt2Genome CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgcagC---TGCAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa Alignment from Pairagon CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgcagC---TGCAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa Alignment from Exonerate_protein2genome CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgCAGCTGCAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa Alignment from Exonerate_coding2genome CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgCAGCTGCAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa Alignment from GeneWise CTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAG ttgcacagatgtagctagcatatatcaaaacttattctctgtctctgcagCTG---CAAGTCATCATGAACACAACACACCTAGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAACATTTCTCGAGAAAATGTTCACACTACAAGACTTTTTGGTCTTTCCACTTTTAAGgtaagattacaacaactgaatgatgagctttggtgaaattttacaaccaa #### Fads1_ID2688_2 --> 0 - 0 Original Alignment GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTCTCTT---CTTGGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATgcaaggaagtagaccccaaaaatcaaagataccatggttgctctttggaa Alignment from CESAR GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTCTCTTCTT---GGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATgcaaggaagtagaccccaaaaatcaaagataccatggttgctctttggaa Alignment from Spaln_aa2Genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTCTCTTCTT---GGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATgcaaggaagtagaccccaaaaatcaaagataccatggttgctctttggaa Alignment from Spaln_nt2Genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTC---TCTTCTTGGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATgcaaggaagtagaccccaaaaatcaaagataccatggttgctctttggaa Alignment from Pairagon GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTCTCTTC---TTGGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATgcaaggaagtagaccccaaaaatcaaagataccatggttgctctttggaa Alignment from Exonerate_protein2genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTCTCTTCTT---GGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATgcaaggaagtagaccccaaaaatcaaagataccatggttgctctttggaa Alignment from Exonerate_coding2genome GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTCTCTTCTT---GGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATgcaaggaagtagaccccaaaaatcaaagataccatggttgctctttggaa Alignment from GeneWise GATCCTTTTGTGGCATTCCACATCAACAAGGGTCTTGTGAGAAAGTATATGAACTCTCTTCTGATTGGAGAGCTGGCTCCGGAGCAACCCAGCTTTGAACCCACCAAGAAT-AAAGCG- ggaacctgattgagtagggtcctcactgattataactgtgactaacttagGATCCTTTTGTGGCATTCCACATCAACAAGGGTCTCGTGAGGAAGTATATGAACTCTCTTCTT---GGGGAGCTGGCTCCAGAACAACCCAGCTTTGAACCCACCAAGAATGCAAGGAAgtagaccccaaaaatcaaagataccatggttgctctttggaa #### Fads2_ID2681_3 --> 0 - 0 Original Alignment TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCCTC---ACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt Alignment from CESAR TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCCTC---ACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt Alignment from Spaln_aa2Genome TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCCTC---ACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt Alignment from Spaln_nt2Genome TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCCTC---ACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt Alignment from Pairagon TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCC---TCACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt Alignment from Exonerate_protein2genome TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCCTC---ACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt Alignment from Exonerate_coding2genome TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCCTC---ACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt Alignment from GeneWise TCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAGCCTTGCCTGGTTCATCCTCTCGTACTTCGGCACTGGCTGGATTCCTACCCTCGTCACAGCCTTTGTCCTCGCTACCTCTCAG ccagtcacatatcacctactagagccaacgatgcctcttctcctggacagTCCCAGATCACTGAGGATTTCAGGGCACTGAAGAAGACTGCTGAGCAGATGAACCTCCTCAAAACCAACCACCTGTTCTTTTTTCTCCTCCTCTCACACATCATTGTTATGGAAAGCCTCACCTGGTTCATCCTCTCATACTTTGGTACAGGCTGGATACCTACCCTC---ACAGCGTTTGTCCTTGCTACTTCTCAAgtaggatctgcctttgctgattcttccaacatccccgtgccagcctcatt #### Fads3_ID2663_6 --> 0 - 1 Original Alignment TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGa tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGagtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag Alignment from CESAR TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGa tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGagtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag Alignment from Spaln_aa2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGAgtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag Alignment from Spaln_nt2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGAgtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag Alignment from Pairagon TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGAgtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag Alignment from Exonerate_protein2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGAgtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag Alignment from Exonerate_coding2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGAgtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag Alignment from GeneWise TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA tctgagcccagagagctgttctccctggtgtgctttctttcctcttccagTATGGTAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCTATACTTCTTCCTGAgtaagtcggtaccaacaagcctttgtgggtgggaatcctaaagtagacag #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaataggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaataggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTgtgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTgtgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT caatatggtgtgcctgactggaaagttcacccttcttcacatctgtccagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTAGAGAATGGACTGATAGCAGGTGCTGTgtaagtgcccactctgtaagtggcatctcctcagtcaagagttggtgtga #### Fam178a_ID9219_2 --> 1 - 1 Original Alignment gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg tatgccattattgtagctattgacctataaaagctttctcactcttttaggAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAggtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga Alignment from CESAR gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg tatgccattattgtagctattgacctataaaagctttctcactcttttaggAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAggtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga Alignment from Spaln_aa2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tatgccattattgtagctattgacctataaaagctttctcactcttttagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAGgtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga Alignment from Spaln_nt2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tatgccattattgtagctattgacctataaaagctttctcactcttttagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAGgtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga Alignment from Pairagon GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tatgccattattgtagctattgacctataaaagctttctcactcttttagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAGgtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga Alignment from Exonerate_protein2genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tatgccattattgtagctattgacctataaaagctttctcactcttttagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAGgtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga Alignment from Exonerate_coding2genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tatgccattattgtagctattgacctataaaagctttctcactcttttagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAGgtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga Alignment from GeneWise GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tatgccattattgtagctattgacctataaaagctttctcactcttttagGAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACAAGgtgagtccattaatgcgattttgattagtgtgaccttttgccatgtctga #### Fam178a_ID9222_5 --> 2 - 0 Original Alignment gcTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcaggcTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGgtaagaagtgctgcactgacttatcttggcttgatgaggcaagacagtgt Alignment from CESAR gcTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcaggcTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGgtaagaagtgctgcactgacttatcttggcttgatgaggcaagacagtgt Alignment from Spaln_aa2Genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcagGCTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGgtaagaagtgctgcactgacttatcttggcttgatgaggcaagacagtgt Alignment from Spaln_nt2Genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcagGCTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGgtaagaagtgctgcactgacttatcttggcttgatgaggcaagacagtgt Alignment from Pairagon GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcagGCTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGgtaagaagtgctgcactgacttatcttggcttgatgaggcaagacagtgt Alignment from Exonerate_protein2genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcagGCTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGgtaagaagtgctgcactgacttatcttggcttgatgaggcaagacagtgt Alignment from Exonerate_coding2genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATGGAATATGCTCAGAGCGGAACTTACACAAATACCTTAGA ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcagGCTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGGTAAGAAGTGCTGCACTGACTTATCTTGGCTTGATGAGgcaagacagtgt Alignment from GeneWise GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG ggatctgtttgacgctgacggtgggttggactctgacccgtgttcttcagGCTCTAAACAAAATAAGTTTTCTGACAAAAGAAAGAGAAACTCTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATCATACCAGAAGCAAGAGAGTCCTTCCTTGAGAAGCACCCAGACCCATCTCACCAGAGAGAAAAATTTATCAAACACATTGCACTCAAGACTCCAGGTGGTGTTCTGCGCCTCGAGGACATAGCTAAGGAGCCTGAGGATGAGACAGATCAGTCCTCTGCAGACTCTGCACCTTCAAATGCTGGCCACCACTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTTCCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTCCAGAAAAATAAGCCTGCTGGATCTGTGACATCAAAAGAGACAAAGCTGCCTTTGCTTTCCCATGTTCCAAGTGCTGTTTCCTCTCAAGTACCACTAAATGCTAAAAATTGCACTCTTCCTGTTCCTGAAAAGGATAAAGAGCATTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCGAAACACAAGGAACACAGGGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGAAAAAATTCTGGAGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAATTCAGGGATGATTTCGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTAAAATCTTTGGAAGAAATAATGGCACTGAACTTGAGTCGGACTCCTACGAGTTCAGGAAAGCCTCCAGCAGTTTCTAGGGGGCTTAGATCTCAGTCGTCAGACTACATGgtaagaagtgctgcactgacttatcttggcttgatgaggcaagacagtgt #### Fam178a_ID9234_15 --> 1 - 0 Original Alignment gCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcaggCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa Alignment from CESAR gCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcaggCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa Alignment from Spaln_aa2Genome GCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcagGCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa Alignment from Spaln_nt2Genome GCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcagGCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa Alignment from Pairagon GCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcagGCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa Alignment from Exonerate_protein2genome GCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcagGCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa Alignment from Exonerate_coding2genome GCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcagGCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa Alignment from GeneWise GCAGCTGAGGCAGTGCCTCAGTCTGGTGATGATGTCAAAGCTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAACCTTCAG tagagactggaactccctgtatcaaattgctgatggctcttttctttcagGCAGGTGAGACAGTGTCTTACTCTAGTAATGATGTCAAAACTTTTGGATGAAAAGCATGAAGATATTCCTAATGCCAATAATCTTCAAgtaagtaagatagacttctgtttctaagaagtaagagtgttacttggaaa #### Fam178a_ID9236_17 --> 0 - 0 Original Alignment GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga Alignment from CESAR GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga Alignment from Spaln_aa2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga Alignment from Spaln_nt2Genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga Alignment from Pairagon GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga Alignment from Exonerate_protein2genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga Alignment from Exonerate_coding2genome GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga Alignment from GeneWise GCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGG aatgtattcatgctgccatattcatgggatgtacctttctctccttgcagGCATATTACCTGACCTACATCCTTCTTCATTTAGTTGGGGAAGTTAGTTGCTCTCATTCTCTTTCTTCTGGACAACGGgtgagttgtaattagttttattgtaaattattctggttcattgtgacaga #### Fam178a_ID9237_18 --> 0 - 0 Original Alignment AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc Alignment from CESAR AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc Alignment from Spaln_aa2Genome AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc Alignment from Spaln_nt2Genome AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc Alignment from Pairagon AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc Alignment from Exonerate_protein2genome AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc Alignment from Exonerate_coding2genome AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc Alignment from GeneWise AAACACTTCGTGCTGCTTTGTGGGGCTTTGGAAAAGCATGTTAAGTGTGATATTAGGGAAGATGCAAGACTTTTCTACAGAACTAAA tctcaggctcactttgatctcatctggtggacattatgtcttcttaccagAAACACCTCGTGCTGCTGTGTGGGGCTTTGGAGAAGCATGTCAAGTGTGATATTAGGGAGGATGCAAGGCTTTTCTATAGAACTAAAgtaagtgtattgtttacagttagtgtataatcagtctagaattgtttgtc #### Fam189a2_ID5250_8 --> 0 - 1 Original Alignment GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAggtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag Alignment from CESAR GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAggtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag Alignment from Spaln_aa2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAGgtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag Alignment from Spaln_nt2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAGgtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag Alignment from Pairagon GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAGgtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag Alignment from Exonerate_protein2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAGgtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag Alignment from Exonerate_coding2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAGgtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag Alignment from GeneWise GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAA- agagcaagaaccaaaaacaatgtcccccctcctccccctggtgttcccagGAAACCTCATTCCAAATGCCTGAAGGACCAGAAACTGCTGCAAGTCCTGCGGAGCCAGTTTGTACGCAGATAACCCAAGgtaagtcacgctgtttctatatcaggccatgggaatagagatgtctatag #### Fam45a_ID13335_3 --> 0 - 2 Original Alignment GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTag aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTaggtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt Alignment from CESAR GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTag aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTaggtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt Alignment from Spaln_aa2Genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTAGgtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt Alignment from Spaln_nt2Genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTAGgtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt Alignment from Pairagon GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTAGgtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt Alignment from Exonerate_protein2genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTAGgtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt Alignment from Exonerate_coding2genome GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTAGgtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt Alignment from GeneWise GTGACTCATTTTTCTATTGTTCTGACCGCCAAAGATTTTAACCCAGAGAAATATGCCGCCTTCACTAGGATATTGTGTAG aatattgcctttgatcaaaagcactgatgaacgtcttgcttggtctgcagGTGACTCATTTTTCGATTGTTCTGACTGCTAAAGATTTTAACCCAGACAAATATGCCGCCTTCACTAGGATACTGTGTAGgtcagcatacaaactactgagtgcgaatttaccaaattagagattgaatt #### Fam45a_ID13336_4 --> 1 - 1 Original Alignment aATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAg ttttctctacattacacccactttcaacgaccctctgcctctgcccacagaTTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAggtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc Alignment from CESAR aATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAg ttttctctacattacacccactttcaacgaccctctgcctctgcccacagaTTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAggtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc Alignment from Spaln_aa2Genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG ttttctctacattacacccactttcaacgaccctctgcctctgcccacagATTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAGgtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc Alignment from Spaln_nt2Genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG ttttctctacattacacccactttcaacgaccctctgcctctgcccacagATTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAGgtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc Alignment from Pairagon AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG ttttctctacattacacccactttcaacgaccctctgcctctgcccacagATTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAGgtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc Alignment from Exonerate_protein2genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG ttttctctacattacacccactttcaacgaccctctgcctctgcccacagATTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAGgtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc Alignment from Exonerate_coding2genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG ttttctctacattacacccactttcaacgaccctctgcctctgcccacagATTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAGgtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc Alignment from GeneWise AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG ttttctctacattacacccactttcaacgaccctctgcctctgcccacagATTCTATTTAAAGTATGGAAGTTCAGTTAAAATGATGGAAAGCTACATTGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCAAAAAAGgtaagtacaaacggatgaccaatcaaacagcatatgtagagcatgctctc #### Fam45a_ID13340_8 --> 2 - 0 Original Alignment agGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagaaGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca Alignment from CESAR agGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagaaGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca Alignment from Spaln_aa2Genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagAAGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca Alignment from Spaln_nt2Genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagAAGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca Alignment from Pairagon AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagAAGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca Alignment from Exonerate_protein2genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagAAGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca Alignment from Exonerate_coding2genome AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagAAGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca Alignment from GeneWise AGGCCATGACGATGGGCAAACTGCATAAAGAGATTGGTCAACTAATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGACAGCCAGGTTATACAG gcacattagtagtcctttggtcagagctgaccatcccttctgcccttcagAAGCTATGACCATGGGGAAACTGCATAAAGAGATTGGTCAACTGATTGTGCAATCTGCAGAAGACCCAGAGAAATCAGATAGTCAGGTTATACAGgtgagtctggcatgcctcatgcatgataagcaattttatgctatctgcca #### Fas_ID6923_4 --> 2 - 2 Original Alignment gtTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCtc aattgtcacacctactactacaattaactgggatctctgtcttcttacaggtCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCAtcgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc Alignment from CESAR gtTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCtc aattgtcacacctactactacaattaactgggatctctgtcttcttacaggtCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCAtcgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc Alignment from Spaln_aa2Genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactactacaattaactgggatctctgtcttcttacagGTCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc Alignment from Spaln_nt2Genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactactacaattaactgggatctctgtcttcttacagGTCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc Alignment from Pairagon GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactactacaattaactgggatctctgtcttcttacagGTCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc Alignment from Exonerate_protein2genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactactacaattaactgggatctctgtcttcttacagGTCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc Alignment from Exonerate_coding2genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactactacaattaactgggatctctgtcttcttacagGTCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc Alignment from GeneWise GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactactacaattaactgggatctctgtcttcttacagGTCTTGAGGTGGAAACGAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaagcaattaacacttagtgcctaagacattggccaatgagatggaacc #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTggtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTggtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagaCTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagaCTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acactgtaagatgcacttatcttgcagaccttctttttctgatgaatcagACTCCTTGATCTGCCTTGGGAAGATGTGCTGCTCCTGCATGTTCTAAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTAGAGCCTTCGGGGCACTTATTCAGTTACATTTGGCAAGGCTGCGCCGCTTTGATGCTGCTCAGgtagcatggtgattggggctgcccttgtccctgtgctgctttgataccgc #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttttactttataaggatgtatttctgtagtgAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAaggtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag acatctgggggccttatagggttttactttataaggatgtatttctgtagtgAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAaggtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCT------CCTACTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTAC------TCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG acatctgggggccttatagggttttactttataaggatgtatttctgtagTGAATGATGCAGTGGCTCTACATGTGCGTTCTGGCATTTTAGAGCAGACCGGGGCCACCACAGGAGTGCTCCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTGTTACGTCCACCCCCAAAGCTCCTA------CTCATCTTCCAGATTCCTCCTGCCCGCCAGACTCTCCTCATTGAAAGgtaaggaacagggtggttggtggggtgggtactgacaggagtgtcatcag #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagcCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagcCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggttacaacactcagtttatagaaaatcttttgatttctttctcagCCTAGTTTGCACTGCCCTTCGGGGAAAGCTCGGTGTCTTCTCTGAGATGGAAACCAACTTCAAGgtaagttgacttggcagtcagagccctctgcatagatcaccaagtgacct #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCcggtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCcggtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc #### Fra10ac1_ID7560_9 --> 2 - 2 Original Alignment gaTTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACag tataatccgttgggttcagtaggctcactgttcttttttgggtgttacaggaTTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACcggtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca Alignment from CESAR gaTTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACag tataatccgttgggttcagtaggctcactgttcttttttgggtgttacaggaTTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACcggtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca Alignment from Spaln_aa2Genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tataatccgttgggttcagtaggctcactgttcttttttgggtgttacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACCGgtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca Alignment from Spaln_nt2Genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tataatccgttgggttcagtaggctcactgttcttttttgggtgttacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACCGgtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca Alignment from Pairagon GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tataatccgttgggttcagtaggctcactgttcttttttgggtgttacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACCGgtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca Alignment from Exonerate_protein2genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tataatccgttgggttcagtaggctcactgttcttttttgggtgttacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACCGgtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca Alignment from Exonerate_coding2genome GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tataatccgttgggttcagtaggctcactgttcttttttgggtgttacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACCGgtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca Alignment from GeneWise GATTATGCCAAGAATGTTCCTTTAAATTAAATTTTCATCACAG tataatccgttgggttcagtaggctcactgttcttttttgggtgttacagGATTATGCCAAGAATGCTCCTTTAAATTAAATTTTCACCACCGgtgagctttattcgtaaagtatcatttttaatgtttgacaatctagttca #### Fra10ac1_ID7564_6 --> 1 - 0 Original Alignment gGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcaggGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata Alignment from CESAR gGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcaggGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata Alignment from Spaln_aa2Genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcagGGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata Alignment from Spaln_nt2Genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcagGGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata Alignment from Pairagon GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcagGGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata Alignment from Exonerate_protein2genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcagGGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata Alignment from Exonerate_coding2genome GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcagGGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata Alignment from GeneWise GGAGAAGAGACTTGCAAAGAAATACTATGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAG attgctgtttgaattcctcaaaaagcaagaatgcacacttcttcctgcagGGAGAAAAGGCTTGCAAAGAAATACTACGATAAATTATTCAAGGAATACTGCATAGCTGATCTCAGTAGATACAAAGAAAATAAGgtaagtcctaggaacactttctactggcactcttgtccagctacaggata #### Frmd8_ID1283_5 --> 0 - 2 Original Alignment ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGag agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCcggtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta Alignment from CESAR ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGag agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCcggtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta Alignment from Spaln_aa2Genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCCGgtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta Alignment from Spaln_nt2Genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCCGgtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta Alignment from Pairagon ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCCGgtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta Alignment from Exonerate_protein2genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCCGgtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta Alignment from Exonerate_coding2genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCCGgtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta Alignment from GeneWise ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttgagctcctctgaaccatgccttctttcccttcttgtttctagATCTATGATGAAGAGGTCTTGCGACTGCTCTATGAAGAAGCCAAGGGCACTGTACTGGCTGCTCGATACCCTTGTGACTTAGAGGACTGCAAAGTGTTGGGTGACCTTGTGTGCCGTGTGCAGCTTGGTCCCTATCAGCCTGGCCAACCTGCCTCCTGCACCCTCCGgtaaatacagcaaagttaacataggcatttggaggaaaaattactgtgta #### Frmd8_ID1285_3 --> 2 - 1 Original Alignment agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGg atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagagGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGACGAC---------ATGggtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac Alignment from CESAR agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGg atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagagGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGACGAC---------ATGggtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac Alignment from Spaln_aa2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGACGAC---------ATGGgtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac Alignment from Spaln_nt2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGA---------CGACATGGgtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac Alignment from Pairagon AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGACGA---------CATGGgtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac Alignment from Exonerate_protein2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGAT atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGACGACATGggtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac Alignment from Exonerate_coding2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGAT atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGACGACATGggtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac Alignment from GeneWise AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGAT- atggccatggagatgttagctgggtaggtgctgccctctggggcttgcagAGGTGCAATTAAAGCCAAAACACCAGCCCTATAAACTGGGTCGGCAGTGGCTAGAGCTGGTGTTGCGCTTCACAAAAGCTTCCGACGACATGGgtaatgagcttggaccagggtgctttgaaggaggctttagaaggatagac #### Fxn_ID5299_2 --> 0 - 2 Original Alignment CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAaggtaagtagaagccattctaccctcctgcatctatttcctctctctccata Alignment from CESAR CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAaggtaagtagaagccattctaccctcctgcatctatttcctctctctccata Alignment from Spaln_aa2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAAGgtaagtagaagccattctaccctcctgcatctatttcctctctctccata Alignment from Spaln_nt2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAAGgtaagtagaagccattctaccctcctgcatctatttcctctctctccata Alignment from Pairagon CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAAGgtaagtagaagccattctaccctcctgcatctatttcctctctctccata Alignment from Exonerate_protein2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAAGgtaagtagaagccattctaccctcctgcatctatttcctctctctccata Alignment from Exonerate_coding2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAAGgtaagtagaagccattctaccctcctgcatctatttcctctctctccata Alignment from GeneWise CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG agcagaataaatgctgacatgggaattactctttcttccttgcctttcagCATCTGAACCTACATTACCTGCAGATATTGAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTGGGTACATTGGACAATCCAAGgtaagtagaagccattctaccctcctgcatctatttcctctctctccata #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from CESAR gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Pairagon GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from GeneWise TGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaagTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca #### Gal_ID64_2 --> 0 - 1 Original Alignment GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTG------GGCCCAc cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGGTCCAcgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc Alignment from CESAR GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTGGGC------CCAc cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGGTCCAcgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc Alignment from Spaln_aa2Genome GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTGGGCCCAC cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGgtccacgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc Alignment from Spaln_nt2Genome GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTGGGCCCAC cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGgtccacgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc Alignment from Pairagon GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTGGGCCCA------C cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGGTCCACgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc Alignment from Exonerate_protein2genome GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTGGGCCCAC cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGgtccacgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc Alignment from Exonerate_coding2genome GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTGGGCCCAC cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGgtccacgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc Alignment from GeneWise GCAAAGGAGAAGAGAGGTTGGACCCTGAACAGCGCTGGCTACCTTCTGGGCCCAC cctcctcccaagatcctaggctgtctaaataattgtgtttctctcttaagGCTAAAGAGAAGAGAGGTTGGACCCTTAACAGTGCAGGCTATCTCCTGGGCCCAGgtccacgtgagctccagagatagctagcaccactctcaaggccctcaaaccccatc #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagaGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagaGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattgggctcacttgagcattcagtgtaagagagaggtggggtcacacagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCGATGGCTCTGTATGGGTCTGTCCCTGTGCTG---GCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCGGCTGAGACTTGGGTTGATATATCATCCAACACAGCCGGGAAGgtacatccaaggcatgggagacatgtgggagggctttgccatgcctcctg #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaagttctgctgtcaatgaaatagtcatgatgattttcctttcctacca Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtaagttctgctgtcaatgaaatagtcattgttatggttttgttttgtca Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcatgatgattttcctttcctacca Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcatgatgattttcctttcctacca Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACATCAAG------GTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcatgatgattttcctttcctacca Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcatgatgattttcctttcctacca Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcatgatgattttcctttcctacca Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggatggccatggtagtctaaacaatttcgttgtgtcccctgtgtccccagCTAGTTGCTACTGTGGACCCCCATATCAAGGTTAAAGTAGACTCCGGCTACCGAGTTCATGAAGAGTTGCAAAACCATGGCCTGTACATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtaagttctgctgtcaatgaaatagtcatgatgattttcctttcctacca #### Ganab_ID2475_14 --> 2 - 0 Original Alignment gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG tgtggtctgctgtcaatgaaatagtcattgttatggttttgttttgtcaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from CESAR gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG taagttctgctgtcaatgaaatagtcattgttatggttttgttttgtcaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Spaln_aa2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG tgtggtctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Spaln_nt2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG tgtggtctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Pairagon GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG tgtggtctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Exonerate_protein2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG tgtggtctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from Exonerate_coding2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG tgtggtctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt Alignment from GeneWise GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG tgtggtctgctgtcaatgaaatagtcattgttatggttttgttttgtcagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtgagtatctggtaatgttgatcatcattatcctgttgatcgtcgatagt #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggtcccataagtgtgtataacatggtattctttgctctctccttccgcagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAAgtactacaccaaatatagcagccaaagggacaaaaacatagatgccctat #### Gbf1_ID9781_4 --> 2 - 0 Original Alignment atCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagatCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca Alignment from CESAR atCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagatCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca Alignment from Spaln_aa2Genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagATCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca Alignment from Spaln_nt2Genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagATCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca Alignment from Pairagon ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagATCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca Alignment from Exonerate_protein2genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagATCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca Alignment from Exonerate_coding2genome ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagATCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca Alignment from GeneWise ATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAG ttccttttctcctttcttcaagacagagggaccctgatcgtgttccccagATCCAACTCACGAAGGCACTGCAGAGGGCATGGAGAATATAGCAGATGCTGTCACTCATACCCGCTTTGTGGGCACTGATCCTGCCAGTGATGAAGTTGTCCTTATGAAAATCCTTAAAgtgagtaggaaagagtaagaaaaaggcttatgtcaacaggtccacaatca #### Gbf1_ID9789_8 --> 0 - 1 Original Alignment CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTg ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTggtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc Alignment from CESAR CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTg ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTggtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc Alignment from Spaln_aa2Genome CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTGgtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc Alignment from Spaln_nt2Genome CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTGgtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc Alignment from Pairagon CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTGgtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc Alignment from Exonerate_protein2genome CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTGgtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc Alignment from Exonerate_coding2genome CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTGgtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc Alignment from GeneWise CTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCTCTAACCTTACTG ttcttttcactactgtttagaatggagagtttggattttctgttttctagCTGAAAATGAGAGCAGAAGGCATGAGTGACTCATCCAAGTGGAAGAAACAAAAAAGATCTCCTCGACCTCCACGTCATACAACCAAGGTCACACCAGGTTCAGAGCTGCCCACCCCAAACGGAGCCACATTACCCTCTAACCTCACTGgtgaggggtatgggtaacctcctattaaaaaacattgagaagatcctttc #### Gbf1_ID9791_10 --> 0 - 1 Original Alignment GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAg ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAggtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt Alignment from CESAR GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAg ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAggtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt Alignment from Spaln_aa2Genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt Alignment from Spaln_nt2Genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt Alignment from Pairagon GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt Alignment from Exonerate_protein2genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt Alignment from Exonerate_coding2genome GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt Alignment from GeneWise GAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGGACTACGTCAATCCTCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGAAG ttttctgccttacttttgttcatctgtatggattttactttatcatctagGAAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCAGTGGAGACCATCCCTGAAGTGTTAGAGGAATGCACATCTCCTGCTGACCACTCTGACTCAGCCTCTGTCCATGATATGGACTATGTTAATCCTCGGAGTGTGCGCTTTACCCAGTCCTCCCAGAAAGAAGgtgagcactctcttaaagggtgattctgtttccagtagatacaagatatt #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatggcgtatgttcctaccacaagtattgctccatcctttcctttttagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgtgtcatcttatgctgttcttattgttattctattatgtccgtactcc #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac #### Gbf1_ID9802_21 --> 1 - 2 Original Alignment gAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCag aatacattgcaagtggttacagggtgccatattgctcctttacaattcagaAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCaggtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt Alignment from CESAR gAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCag aatacattgcaagtggttacagggtgccatattgctcctttacaattcagaAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCaggtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt Alignment from Spaln_aa2Genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttacagggtgccatattgctcctttacaattcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCAGgtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt Alignment from Spaln_nt2Genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttacagggtgccatattgctcctttacaattcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCAGgtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt Alignment from Pairagon GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttacagggtgccatattgctcctttacaattcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCAGgtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt Alignment from Exonerate_protein2genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttacagggtgccatattgctcctttacaattcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCAGgtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt Alignment from Exonerate_coding2genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttacagggtgccatattgctcctttacaattcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCAGgtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt Alignment from GeneWise GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttacagggtgccatattgctcctttacaattcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGTGTGTTGCTTCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCTTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAGCCATTTCTGGCTTCAGgtgaaagctcatctcctgtctttaccatccactgctaagtttaacctgtt #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacaggaGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacaggaGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacagGAGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacagGAGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacagGAGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacagGAGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacagGAGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG ttccatggcccatatcagtttgtactctgctcctctgacttgaaccacagGAGCACAGTCAGATAGTGAGATCCCATTATACCATCAAAATGATGTTAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGAAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtgagtttcctctcattttaggtaaacaaatgggttgtagttctcagaat #### Gda_ID4891_12 --> 2 - 0 Original Alignment ccCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCT---CCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagccTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGA------------------------------------ACAGACTCTCCCCCCATTGACCTATTTTATGGTGATTTCGTTGGTGATATTTCTCAGgtaagtgtacacattaaacaaaaggttctttagagtgaggggaaagggat Alignment from CESAR ccCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagccTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGAACAGAC------------------------------TCT---CCCCCCATTGACCTATTTTATGGTGATTTCGTTGGTGATATTTCTCAGgtaagtgtacacattaaacaaaaggttctttagagtgaggggaaagggat Alignment from Spaln_aa2Genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagCCTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGAACAGAC---------------------------------TCTCCCCCCATTGACCTATTTTATGGTGATTTCGTTGGTGATATTTCTCAGgtaagtgtacacattaaacaaaaggttctttagagtgaggggaaagggat Alignment from Spaln_nt2Genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagCCTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGAACAGA----------CTCT--------CCC---------------CCCATTGACCTATTTTATGGTGATTTCGTTGGTGATATTTCTCAGgtaagtgtacacattaaacaaaaggttctttagagtgaggggaaagggat Alignment from Pairagon CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCT---CCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagCCTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGAA------------------------------------CAGACTCTCCCCCCATTGACCTATTTTATGGTGATTTCGTTGGTGATATTTCTCAGgtaagtgtacacattaaacaaaaggttctttagagtgaggggaaagggat Alignment from Exonerate_protein2genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAA gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagCCTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGAACAGACtctccccccattgacctattttatggtgatttcgttggtgatatttctcaggtaagtgtacacattaaacaaaaggttctttagagtgaggggaaagggat Alignment from Exonerate_coding2genome CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAGG gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagCCTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGAACAGACTCTCCCCCCATTGACCTATTTTATGGTGATTTCGTTGGTGATATTTCTCAGGTAAGTGTACACATTAAACAAAAGGTTCTTTAGAgtgaggggaaagggat Alignment from GeneWise CCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTTATGGGGATTTTGTTGGTGATATTTCTGAG gagaatacaggggatgttttcatctgaatttatattttaaaaacatttagCCTTGGGACTTGATGGTGAGATTGGAAACTTTGAAGTTGGAACAGAC---------------------------------TCTCCCCCCATTGACCTATTTTATGGTGATTTCGTTGGTGATATTTCTCAGgtaagtgtacacattaaacaaaaggttctttagagtgaggggaaagggat #### Gfra1_ID12582_8 --> 0 - 0 Original Alignment GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta Alignment from CESAR GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta Alignment from Spaln_aa2Genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta Alignment from Spaln_nt2Genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta Alignment from Pairagon GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta Alignment from Exonerate_protein2genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta Alignment from Exonerate_coding2genome GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta Alignment from GeneWise GCACAGAAGCTGAAATCCAATGTATCGGGCAGTACACATCTCTGTCTTTCTGAT tctgccctattacgtcaaacttcctttttctaaactcctgcctcttccagGCACAGAAGCTTAAATCCAATGTCTCAGGTAGTACACATCTCTGCCTATCTGATgtaagttaccatcctttttatctcccctcacaggcatattgacttgtcta #### Gfra1_ID12679_3 --> 2 - 1 Original Alignment gaAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAg ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagggAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAggtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag Alignment from CESAR gaAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAg ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagggAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAggtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag Alignment from Spaln_aa2Genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagGGAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAGgtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag Alignment from Spaln_nt2Genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagGGAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAGgtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag Alignment from Pairagon GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagGGAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAGgtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag Alignment from Exonerate_protein2genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagGGAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAGgtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag Alignment from Exonerate_coding2genome GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagGGAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAGgtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag Alignment from GeneWise GAAATGACCTACTGGAAGATTCCCCATATGAGCCGGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCGTTCATATCAG ttggcaagaaaactcaacttctgatgagtgctgctgccttggtctttcagGGAATGACTTGCTTGAGGATTCCCCATATGAGCCAGTTAACAGCAGGCTGTCAGATATATTCCGGGCAGTCCCATTTATATCAGgtcaggtgaacagtaaaggccatttataacctttcatacatctgctccag #### Gfra1_ID12683_2 --> 2 - 1 Original Alignment atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gaatccccagtagtctgctgtattcaaaatccctctgtccccccgcacagatTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtttgtattacataaccccaccagcacagagcactgcttagacagccaga Alignment from CESAR atTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGg gaatccccagtagtctgctgtattcaaaatccctctgtccccccgcacagatTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGggtttgtattacataaccccaccagcacagagcactgcttagacagccaga Alignment from Spaln_aa2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtagtctgctgtattcaaaatccctctgtccccccgcacagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtttgtattacataaccccaccagcacagagcactgcttagacagccaga Alignment from Spaln_nt2Genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtagtctgctgtattcaaaatccctctgtccccccgcacagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtttgtattacataaccccaccagcacagagcactgcttagacagccaga Alignment from Pairagon ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtagtctgctgtattcaaaatccctctgtccccccgcacagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtttgtattacataaccccaccagcacagagcactgcttagacagccaga Alignment from Exonerate_protein2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtagtctgctgtattcaaaatccctctgtccccccgcacagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtttgtattacataaccccaccagcacagagcactgcttagacagccaga Alignment from Exonerate_coding2genome ATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gaatccccagtagtctgctgtattcaaaatccctctgtccccccgcacagATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtttgtattacataaccccaccagcacagagcactgcttagacagccaga Alignment from GeneWise TTCCTAGCCACTCTGTACTTCGTGCTGCCACTC---------CTGGATTTGCTGATGTCGGCCGAGGTGAGTGGTGGGGACCGCCTGGACTGTGTGAAAGCCAGTGATCAGTGCCTGAAGGAACAGAGCTGCAGCACCAAGTACCGCACACTGAGGCAGTGCGTGGCGGGCAAGGAAACCAACTTCAGCCTGACATCCGGCCTCGAGGCCAAGGATGAGTGCCGCAGCGCTATGGAGGCCTTGAAGCAGAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGTCTGCGTATCTACTGGAGCATGTACCAGAGCCTGCAGG gtag---------TCTGCTGTATTCAAAATCCCTCTGTCCCCCCGCACAGATTTACTGATGTCGGCTGAGGTTAGTGGTGGGGATCACCTGGACTGTGTGAAAGCAAGTGATCACTGCCTGAAGAAACAGAGCTGCAGTACCAAGTACCGCACACTGAGGCAGTGTGTGGCAGGTAAGGAAACCAACTTCAGCCTGACATCCAGCCTTGAGGCTAAGGATGAGTGCCGCAGCACAATGGAGGCCTTGAAGCAAAAGTCTCTCTACAACTGCCGCTGCAAGCGGGGCATGAAGAAAGAGAAGAATTGCCTGCGAATCTACTGGAGCATGTACCAGAGCCTGCAGGgtttgtattacataaccccaccagcacagagcactgcttagacagccaga #### Gif_ID3278_2 --> 2 - 1 Original Alignment ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagctGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAggtaagacactaggggcccatccctgacacctggatcttccacacacaccc Alignment from CESAR ctGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAg gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagctGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAggtaagacactaggggcccatccctgacacctggatcttccacacacaccc Alignment from Spaln_aa2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagCTGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAGgtaagacactaggggcccatccctgacacctggatcttccacacacaccc Alignment from Spaln_nt2Genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagCTGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAGgtaagacactaggggcccatccctgacacctggatcttccacacacaccc Alignment from Pairagon CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagCTGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAGgtaagacactaggggcccatccctgacacctggatcttccacacacaccc Alignment from Exonerate_protein2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagCTGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAGgtaagacactaggggcccatccctgacacctggatcttccacacacaccc Alignment from Exonerate_coding2genome CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagCTGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAGgtaagacactaggggcccatccctgacacctggatcttccacacacaccc Alignment from GeneWise CTGTGCCCCCAGATCAGCAACCCTGGGTCGATGGCCTACAAGCGCTCATGGAGAACTCGGTGACTGACTCAGACTTCCCAAACCCCAGCATCCTGATTGCCATGAACCTGGCCGGCGCCTACAACGTGGAGGCCCAGAAACTCCTGACTTACCAGCTCATGGCCAGTGACAGTGCAG gaactgcaattagctaagcgatttttgtccctacctggcttcccccccagCTGTACCCCCAGATCAGCAACCCTGGGTTGAGGGCTTACAAACACTCATGGAGAATTCAGTGACTGACTCAGATTTCCCAAACCCGACCATCTTGATTGCCATGAACCTGGCTGGTGCTTACATTGTGGAGCCCCAAAAACTCCTGACTTACCAGCTTATGGCCAGTGACAGTGCAGgtaagacactaggggcccatccctgacacctggatcttccacacacaccc #### Gldc_ID6390_24 --> 0 - 0 Original Alignment ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc Alignment from CESAR ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc Alignment from Spaln_aa2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc Alignment from Spaln_nt2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc Alignment from Pairagon ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc Alignment from Exonerate_protein2genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc Alignment from Exonerate_coding2genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc Alignment from GeneWise ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG aaccatacttcctacaagaactgattgcctcatcgcgctcctcctcccagATGTCTCCGCATTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCCTATTCTCGCGAGGTAGTCGCATTTCCACTGgtgagtcctctagatgaattaatcccacaatggagtcatcttgagcaggc #### Gldc_ID6406_9 --> 0 - 1 Original Alignment GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAggtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc Alignment from CESAR GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAggtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc Alignment from Spaln_aa2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc Alignment from Spaln_nt2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc Alignment from Pairagon GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc Alignment from Exonerate_protein2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc Alignment from Exonerate_coding2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc Alignment from GeneWise GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgtcttcaaatacatagttgattctgtttttttcttttatctctgtagGCCCTTTTAGCCAACATGGCAGCCATGTTTGCTATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtaagttgataatgctaagctcacagtatgacatgacagtaagtttctcc #### Glis3_ID5980_2 --> 0 - 0 Original Alignment GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCAC---CCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattattttttatttcacagGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc Alignment from CESAR GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCA---GCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattattttttatttcacagGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc Alignment from Spaln_aa2Genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCA---GCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattattttttatttcacagGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc Alignment from Spaln_nt2Genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACC---CAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattattttttatttcacagGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc Alignment from Pairagon GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACC---CAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattattttttatttcacagGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc Alignment from Exonerate_protein2genome ATGTCCACGGATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCA---GCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattattttttATTTCACAGGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc Alignment from Exonerate_coding2genome ATGTCCACGGATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCA---GCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattattttttATTTCACAGGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc Alignment from GeneWise GTATCCATGTCCACGGATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCT---CCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataataagttctgccctcagattttgaggttattaTTTTTTATTTCACAGGATTTTATGGCCAGCTGTAGACACTCGGTCCCTCACATTATCCTAATTCCCAAAGAATTGTGCCACCCGGCAGCAGCTCCTGCAGTATGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACAGAGCCTTCTCAACATACTCAAGCCTCAGAGgtatgtgaatctcacaaccaatgaggtcagtaactggcggcacaggatgc #### Glyat_ID3429_2 --> 0 - 0 Original Alignment GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga Alignment from CESAR GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga Alignment from Spaln_aa2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga Alignment from Spaln_nt2Genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga Alignment from Pairagon GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga Alignment from Exonerate_protein2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga Alignment from Exonerate_coding2genome GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga Alignment from GeneWise GTTTATGGGACCGTCTATCACATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAACACAGTGGTTGTCCGCCCTCAAGAACAG aggtaaattccccataacctaaacaaaaccctcactgtgctcctgcttagGTTTATGGGACTGTCTATCATATGATCCATGGAAACCCATTCAACCTAAAAGCCCTAGTTGACAAGTGGCCTGATTTTAATACAGTGGTTGTCCGCCCTCAAGAACAGgtgagagcatctggcatggagcagacaaacctttagaccaagcctgatga #### Glyat_ID3431_4 --> 2 - 2 Original Alignment gtTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCat atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacaggtTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCatgtaatgttgacaagatctgctagattcttctatccttctacatctacaga Alignment from CESAR gtTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCat atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacaggtTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCatgtaatgttgacaagatctgctagattcttctatccttctacatctacaga Alignment from Spaln_aa2Genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtaatgttgacaagatctgctagattcttctatccttctacatctacaga Alignment from Spaln_nt2Genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtaatgttgacaagatctgctagattcttctatccttctacatctacaga Alignment from Pairagon GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtaatgttgacaagatctgctagattcttctatccttctacatctacaga Alignment from Exonerate_protein2genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtaatgttgacaagatctgctagattcttctatccttctacatctacaga Alignment from Exonerate_coding2genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtaatgttgacaagatctgctagattcttctatccttctacatctacaga Alignment from GeneWise GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT atcatccctcctgatcatatcacaatgtcctgctgtgtttctcttcacagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtaatgttgacaagatctgctagattcttctatccttctacatctacaga #### Gm815_ID5778_2 --> 0 - 1 Original Alignment TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt tatttaccacactacaccattttattttaatagtgggtcttctcttgcagTCCCTAGGAACAATGCTTCTGTGC------------------------------------------------------------TCACAGACT------CACCACtgtaacctaagctagtgcactcataagctcagtagttaatggtgactgctc Alignment from CESAR TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt tatttaccacactacaccattttattttaatagtgggtcttctcttgcagTCCCTAGGAACAATGCTTCTGTGC------------------------------------------------------------TCACAGACT------CACCACtgtaacctaagctagtgcactcataagctcagtagttaatggtgactgctc Alignment from Spaln_aa2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAA tatttaccacactacaccattttattttaatagtgggtcttctcttgcagTCCCTAGGAACAATGCTTCTGTGCTCA---CAGACTCACCACTGTAACCTAAGCTAgtgcactcataagctcagtagttaatggtgactgctc Alignment from Spaln_nt2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGC-CCA-T tatttaccacactacaccattttattttaatagtgggtcttctcttgcagTCCCTAGGAACAATGCTTCTGTGCT-CACAGACTCACCACTgtaacctaagctagtgcactcataagctcagtagttaatggtgactgctc Alignment from Pairagon TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT tatttaccacactacaccattttattttaatagtgggtcttctcttgcagTCCCTAGGAACAATGCTTCTGTGCT------------------------------------------------------------CACAGACT------CACCACTgtaacctaagctagtgcactcataagctcagtagttaatggtgactgctc Alignment from Exonerate_protein2genome CTGTCTGAGTCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATG tatttaccacactacaccattttattttaatagtgggtcttCTCTTGCAGTCCCTAGGAACAATGCTTCTGTGCTCACAGACTCACCACTGTAACctaagctagtgcactcataagctcagtagttaatggtgactgctc Alignment from Exonerate_coding2genome tatttaccacactacaccattttattttaatagtgggtcttctcttgcagtccctaggaacaatgcttctgtgctcacagactcaccactgtaacctaagctagtgcactcataagctcagtagttaatggtgactgctc Alignment from GeneWise tatttaccacactacaccattttattttaatagtgggtcttctcttgcagtccctaggaacaatgcttctgtgctcacagactcaccactgtaacctaagctagtgcactcataagctcagtagttaatggtgactgctc #### Gm8369_ID3207_3 --> 0 - 0 Original Alignment GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt Alignment from CESAR GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt Alignment from Spaln_aa2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt Alignment from Spaln_nt2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt Alignment from Pairagon GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt Alignment from Exonerate_protein2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt Alignment from Exonerate_coding2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt Alignment from GeneWise GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG catgctctttctctttgtataaatggctgtttttaattctccattaacagGGTTCAGATGCGCTGAAGTTAGTTTTAAATATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCCAGAGAGgtatgtagcagttcctgtggatgatgttcagttaggtcggattcgccagt #### Gnaq_ID4029_4 --> 1 - 2 Original Alignment cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagcTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTaggtaatcccagagttcattaaaacccgccagataccattggataagccaag Alignment from CESAR cTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCag taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagcTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTaggtaatcccagagttcattaaaacccgccagataccattggataagccaag Alignment from Spaln_aa2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagCTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTAGgtaatcccagagttcattaaaacccgccagataccattggataagccaag Alignment from Spaln_nt2Genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagCTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTAGgtaatcccagagttcattaaaacccgccagataccattggataagccaag Alignment from Pairagon CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagCTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTAGgtaatcccagagttcattaaaacccgccagataccattggataagccaag Alignment from Exonerate_protein2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagCTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTAGgtaatcccagagttcattaaaacccgccagataccattggataagccaag Alignment from Exonerate_coding2genome CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagCTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTAGgtaatcccagagttcattaaaacccgccagataccattggataagccaag Alignment from GeneWise CTATCTGAATGACTTGGACCGTGTAGCCGACCCTTCCTATCTGCCTACACAACAAGACGTGCTTAGAGTTCGAGTCCCCACTACAGGGATCATCGAATACCCCTTTGACTTACAAAGTGTCATTTTCAG taggcttagaccaatggcaactgacatcggttgtattgatgttgttgcagCTATTTGAATGACTTAGACCGTGTAGCTGACCCTTCCTATCTCCCAACACAACAAGATGTGCTTAGAGTCCGTGTCCCCACAACAGGGATCATTGAGTATCCCTTTGACCTACAAAGTGTTATATTTAGgtaatcccagagttcattaaaacccgccagataccattggataagccaag #### Gnaq_ID4030_5 --> 1 - 0 Original Alignment aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg Alignment from CESAR aATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagaATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg Alignment from Spaln_aa2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg Alignment from Spaln_nt2Genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg Alignment from Pairagon AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg Alignment from Exonerate_protein2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg Alignment from Exonerate_coding2genome AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg Alignment from GeneWise AATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGACAATGAG ttttgacaccgaacggctttgtttgtaatgtgcgctcctcttttctccagAATGGTCGATGTAGGGGGCCAAAGGTCAGAGAGAAGAAAATGGATACACTGCTTTGAAAATGTCACCTCCATCATGTTTCTAGTAGCGCTTAGCGAATATGATCAAGTTCTTGTGGAGTCAGATAATGAGgtatgttggatcaatgattgagcactctatctctagataggagcaaatgg #### Got1_ID8749_6 --> 0 - 1 Original Alignment CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATagtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg Alignment from CESAR CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATagtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg Alignment from Spaln_aa2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg Alignment from Spaln_nt2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg Alignment from Pairagon CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg Alignment from Exonerate_protein2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg Alignment from Exonerate_coding2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg Alignment from GeneWise CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA gcttctgggtgagaccctgctcagaccctagctggtgcttcttcctgcagCGCCGTTTTTTGTTCCCATTCTTTGACTCAGCCTACCAGGGCTTTGCCTCTGCGGATTTGGAGAAAGATGCATGGGCAATTCACTATTTTGAATCCGAAGGCTTCCAACTTTTCTGTGTTCAGTCCTTTTCCAGGAACTTTGGGCTCTATAgtgagtgctacgcagagtatcagcattgtctctcccccagaaccccactg #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagagAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtatgccccagtatttatatttattgccttctccccacagAGAACCATAATGCTGTATTTTCTGCTGCTGGCTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCAGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTGAATGATCTGGAGgtcagagatatagaagcacagggaattctgtttaggtgcagcaagagata #### Gpam_ID11532_17 --> 0 - 0 Original Alignment CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat Alignment from CESAR CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat Alignment from Spaln_aa2Genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat Alignment from Spaln_nt2Genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat Alignment from Pairagon CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat Alignment from Exonerate_protein2genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat Alignment from Exonerate_coding2genome CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat Alignment from GeneWise CAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGACAGTGACTTTGGTGAGGAGCAGCGAGATTGCTATCTCAAG ttgaaggcttggctatgtgtctaggataaaacttttcgttttcctttaagCAAGATGACCAGGAAGATGTCAGTCCTGGTCTTGCAGAACAGCAGTGGGACAAAAAGCTTCCAGAACTGAACTGGAGAAGTGATGAGGAAGATGAAGAAAGTGACTATGGTGAGGAACAGCAAGATTGCTACCTAAAGgtagagggtggtggatacttggtcaagaatagcattgagaaaggatggat #### Gpam_ID11535_14 --> 0 - 1 Original Alignment GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAg aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGGAATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGT---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAggtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga Alignment from CESAR GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAg aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGGAATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGT---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAggtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga Alignment from Spaln_aa2Genome GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGGAATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGT---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAGgtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga Alignment from Spaln_nt2Genome GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGGAATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCG---TGTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAGgtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga Alignment from Pairagon GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGGAATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGTG---TTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAGgtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga Alignment from Exonerate_protein2genome GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGGAATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGT---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAGgtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga Alignment from Exonerate_coding2genome GCAGGGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGG-AACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGG----AATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCG---TGTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCT-GGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAGgtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga Alignment from GeneWise GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aaagaagtttgtggaaattacactatttcccatcttcttatgtccctcagGGAATTCACCTTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGT---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACCCATACAAGCAGGAAAGACAAGTTTTTTATTACTCCAAGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATAATGGAAGCCATTATAGgtaagggagtgtgttgatttcatgatgacattagcactttgctctagaga #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg #### Gpam_ID11544_5 --> 1 - 2 Original Alignment aGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCag cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagaGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCaggttggccagactagggttgcaagggccaagccagctggttcccctcaagt Alignment from CESAR aGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCag cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagaGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCaggttggccagactagggttgcaagggccaagccagctggttcccctcaagt Alignment from Spaln_aa2Genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagAGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCAGgttggccagactagggttgcaagggccaagccagctggttcccctcaagt Alignment from Spaln_nt2Genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagAGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCAGgttggccagactagggttgcaagggccaagccagctggttcccctcaagt Alignment from Pairagon AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagAGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCAGgttggccagactagggttgcaagggccaagccagctggttcccctcaagt Alignment from Exonerate_protein2genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagAGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCAGgttggccagactagggttgcaagggccaagccagctggttcccctcaagt Alignment from Exonerate_coding2genome AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagAGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCAGgttggccagactagggttgcaagggccaagccagctggttcccctcaagt Alignment from GeneWise AGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG cctatcacctagcattgtgcttagtcaagcttcctgctctccctgtccagAGTCAGTGAAGCAATTGCTGAAGTGGCTGCAGAGTTGAACCCAGATGGATCTGCACAACAGCAGTCCAAAGCCATTCATAAGGTGAAAAGGAAAGCCAGAAAAATCCTTCAGGAAATGGTTGTTACAGTGTCACCAGGGATGATCAGgttggccagactagggttgcaagggccaagccagctggttcccctcaagt #### Gpam_ID11547_2 --> 0 - 0 Original Alignment GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat Alignment from CESAR GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat Alignment from Spaln_aa2Genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat Alignment from Spaln_nt2Genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat Alignment from Pairagon GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat Alignment from Exonerate_protein2genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat Alignment from Exonerate_coding2genome GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat Alignment from GeneWise GTTGACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGG agtgtagtagtgtcaagacaatttttgcggctctctctttttttttttagGTTGACTGTGGGTTCAAACCTACCTTCTTTAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCAGCAGAGGCCCTTTGTAGGAAGGTGCTGTTATTCCTGCACTCCGCAGAGCTGGgtgagtagctttgctgtcgcagggggttttcattcaaattgtgataacat #### Gpha2_ID1505_2 --> 2 - 0 Original Alignment ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagcaTTCAACGTTGCAGCAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca Alignment from CESAR ccTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagcaTTCAACGTTGCAGCAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca Alignment from Spaln_aa2Genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagCATTCAACGTTGCAGCAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca Alignment from Spaln_nt2Genome CCTTCAATGTGACGG---TGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagCATTCAACGTTGCAGCAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca Alignment from Pairagon CCTTCAATGTGACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagcattcaacgttgcag------------CAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca Alignment from Exonerate_protein2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagCATTCAACGTTGCAGCAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca Alignment from Exonerate_coding2genome CCTTCAATGTG---ACGGTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagCATTCAACGTTGCAGCAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca Alignment from GeneWise CCTTCAATGTGACG---GTGCGCAGTGATCGCCTCGGCACTTGCCAGGGCTCCCACGTGGCACAGGCCTGTGTAGGACACTGTGAGTCTAGTGCTTTCCCTTCCCGGTACTCTGTGCTGGTGGCCAGTGGCTATCGGCACAACATCACCTCTTCCTCCCAGTGCTGCACCATCAGCAGCCTCAGAAAG cagtttgatgggtatcccagttcatcagcccacctgctcttcttctgtagCATTCAACGTTGCAGCAGTGCGTAGTGACCGCCTTGGAAAGTGTCAGGGATCCCATGTAGCACAGGCCTGTGTGGGACACTGTGAGTCCAGCGCTTTTCCCTCCCGGTACTCTGTATTGGTGGTCAGTGGTTATCGGCACAATACTACGTCATCATCCCCATGCTGTACTATCAGCAGCCTTAGAAAGgtaagtggcctgtgcctggtggagcagccgagcctgggctatgatagaca #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct #### Grk5_ID13411_6 --> 1 - 2 Original Alignment gTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAag cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccaggTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAaagtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag Alignment from CESAR gTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAag cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccaggTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAaagtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag Alignment from Spaln_aa2Genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag Alignment from Spaln_nt2Genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag Alignment from Pairagon GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag Alignment from Exonerate_protein2genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag Alignment from Exonerate_coding2genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag Alignment from GeneWise GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG cttctatgtgggggtcaaagcacacttagtgaattctgcctgacttccagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTAGAAAAgtacgggctctgcagggctcatgggtacaattgtataacaggtcacagag #### Grk5_ID13419_12 --> 2 - 0 Original Alignment ccCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagccCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct Alignment from CESAR ccCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagccCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct Alignment from Spaln_aa2Genome CCCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagCCCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct Alignment from Spaln_nt2Genome CCCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagCCCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct Alignment from Pairagon CCCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagCCCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct Alignment from Exonerate_protein2genome CCCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagCCCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct Alignment from Exonerate_coding2genome CCCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagCCCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct Alignment from GeneWise CCCCAGAAGTTCTGAACAACCAGCGATATGGACTGAGCCCTGACTACTGGGGCCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAGTCACCATTTCGAGGTCGCAAGGAGAAGGTTAAGCGGGAAGAGGTGGATCGCCGGGTGCTGGAGACTGAGGAAGTGTATTCCTCCAAGTTCTCTGAAGAGGCCAAGTCCATCTGCAACATG gggtgtcttctaccactgctgactactagggtggtttatttctttttcagCCCCAGAAGTTCTGAACAACCAACGATATGGACTGAGCCCTGACTATTGGGGTCTGGGCTGCCTCATCTATGAGATGATTGAAGGCCAATCACCATTTCAAGGGCGAAAGGAGAAGGTGAAGCGAGAGGAGGTGGATCGCCGGGTGCTGGAGACTGAAGAAGTGTATTCCTCCAAGTTCTCTGAGGAGGCCAAGTCCATCTGCAACATGgtaagcccccagaatgacagatcacagccatacacatgttagctcaagct #### Grk5_ID13420_13 --> 0 - 0 Original Alignment CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga Alignment from CESAR CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga Alignment from Spaln_aa2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGGAAC------TTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga Alignment from Spaln_nt2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAG------GAACTTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga Alignment from Pairagon CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAG------GAACTTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga Alignment from Exonerate_protein2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga Alignment from Exonerate_coding2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga Alignment from GeneWise CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taccttctttgtctcttttgttcatttgcactgatgatgtgtttttatagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGGAAC------TTCAAGCACTTGGAGGCTGGGATGTTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgcccttgttgtaagtcacatgtccaagctgtgttttttga #### Gsto1_ID10375_3 --> 1 - 0 Original Alignment gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttaggCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag Alignment from CESAR gCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttaggCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag Alignment from Spaln_aa2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttagGCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag Alignment from Spaln_nt2Genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttagGCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag Alignment from Pairagon GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttagGCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag Alignment from Exonerate_protein2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttagGCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag Alignment from Exonerate_coding2genome GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttagGCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag Alignment from GeneWise GCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGGCTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGGATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCTTGAGTCATTCTCTAAG tgcctcagcatatcaattatcaacatgtgttttgttatttttcattttagGCACAACGTAATCAATGTCAACCTGAGAAATAAATCAGACTGGTTCTTTGAGAAGAATCCTCTTGGGCTGGTCCCAGTTCTAGAAAATAGTCAGGGGCACTTGGTCACTGAATCTGCTGTCACCTGTGAGTACCTAGATGAGGCCTTCCCAGAAAAAAAATTATTTCCAGATGATCCATACAGAAAGACGCGTCAGAAAATGACTCTGGAATCATTCTCTAAGgtgagttgaaagaaactcataactaaggtaataccctcctcttgttctag #### Gsto1_ID10376_4 --> 0 - 0 Original Alignment GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt Alignment from CESAR GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt Alignment from Spaln_aa2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt Alignment from Spaln_nt2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt Alignment from Pairagon GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt Alignment from Exonerate_protein2genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt Alignment from Exonerate_coding2genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt Alignment from GeneWise GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG accaggcattggcctctcgctgatgatctgctacatggttgtcattgcagGTGCCACCCTTAATTGCAAGCTTTGTCAGATCCAAGAGAAAGGAAGATTCTCCCAACCTAAGGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaatgacctcttttgaattttatggctggtgtggctgcttgattgttgt #### Gsto2_ID10385_2 --> 2 - 2 Original Alignment gaAGCTGTCCCCCAGGGCCGGTCCCTGAGGGT---------------------GTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCag accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagaaACCTGTCCCCCAGGACCAGTCCCTGAGGGTGCAGAGCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCaggtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat Alignment from CESAR gaAGCTGTCCCCCAGGGCCGGTCCCTGAGGGT---------------------GTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCag accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagaaACCTGTCCCCCAGGACCAGTCCCTGAGGGTGCAGAGCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCaggtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat Alignment from Spaln_aa2Genome GAAGCTGTCCCCCAGGG------CCGGTCCCTGAGGGTGTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCAG accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagaaacctgtcccccagGACCAGTCCCTGAGGGTGCAGAGCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCAGgtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat Alignment from Spaln_nt2Genome GGCCGGTCCCTGAGGGTGTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCAG accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagaaacctgtcccccaggaccagtccctgagggtgcagAGCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCAGgtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat Alignment from Pairagon GAAGCTGTCCCCCAGG---------------------GCCGGTCCCTGAGGGTGTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCAG accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagAAACCTGTCCCCCAGGACCAGTCCCTGAGGGTGCAGAGCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCAGgtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat Alignment from Exonerate_protein2genome CCGGTCCCTGAGGGTGTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCAG accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagaaacctgtcccccaggaccagtccctgagggtgcagagCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCAGgtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat Alignment from Exonerate_coding2genome CCGGTCCCTGAGGGTGTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCAG accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagaaacctgtcccccaggaccagtccctgagggtgcagagCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCAGgtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat Alignment from GeneWise AGCTGTCCCCCAGGGCCGGTCCCTGAGGGT---------------------GTGATCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCATCAG accaggttgccctccccaataggctcttatgtgtcctctgttctttgtagaaACCTGTCCCCCAGGACCAGTCCCTGAGGGTGCAGAGCCAGTCCCTGAGGGTGTGATCCATATCTACAGTATGAGGTTCTGCCCCTACTCACAGAGGGCACGCCTGGTGCTGAAGGCCAAAGGCATCAGgtaagttacagaagcaaagtgctcacctgccatctctggaggtgatctat #### Gsto2_ID10387_4 --> 0 - 0 Original Alignment GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg Alignment from CESAR GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg Alignment from Spaln_aa2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg Alignment from Spaln_nt2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg Alignment from Pairagon GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg Alignment from Exonerate_protein2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg Alignment from Exonerate_coding2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg Alignment from GeneWise GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG gaaaaggtttcacaacaccctgaccaacgaactctggatattttcaccagGTCCCACCACTGAGCAAGGAATGTCTGATCGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGTCAGGAGTTGTGCAACATGGAAGAGgtgagaaggatctgactcattagggatggttgacctgtgtagtgccgctg #### Gucy2g_ID11572_19 --> 2 - 1 Original Alignment gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcaggtCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTAcgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc Alignment from CESAR gtCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGc tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcaggtCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTAcgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc Alignment from Spaln_aa2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc Alignment from Spaln_nt2Genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc Alignment from Pairagon GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc Alignment from Exonerate_protein2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc Alignment from Exonerate_coding2genome GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc Alignment from GeneWise GTCCTGTGGTGGCCGGTGTGGTGGGAATCACCATGCCCAGGTACTGTCTGTTTGGAGACACTGTGAACATGGCATCCAGGATGGAAAGCAGCAGCTTGC tcgattccagttcaagaggcattgttaatctgccgccctgttccccgcagGTCCTGTGGTGGCTGGTGTGGTGGGAATCACCATGCCCAGGTACTGCCTGTTTGGAGACACTGTGAACATGGCATCCACTATGGAAAGCAGCAGCTTACgtgagtggttgaggctgagtaggtcaaaagccatggactctatcaccagc #### Gucy2g_ID11573_18 --> 0 - 1 Original Alignment GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAggtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta Alignment from CESAR GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAggtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta Alignment from Spaln_aa2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta Alignment from Spaln_nt2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGA---GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta Alignment from Pairagon GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGA---GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta Alignment from Exonerate_protein2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta Alignment from Exonerate_coding2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta Alignment from GeneWise GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaacaataaggacttcccttctctcgtatcccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTACATCTACTCAGTGTCACCACCCACTTCCAGATTGGGCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtgagcagcattgctagcgtgggtggttgctgcactctaccaatatgtta #### Gucy2g_ID11577_14 --> 2 - 1 Original Alignment agCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGg tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagagCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGggtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag Alignment from CESAR agCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGg tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagagCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGggtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag Alignment from Spaln_aa2Genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagAGCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGGgtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag Alignment from Spaln_nt2Genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagAGCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGGgtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag Alignment from Pairagon AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagAGCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGGgtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag Alignment from Exonerate_protein2genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagAGCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGGgtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag Alignment from Exonerate_coding2genome AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagAGCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGGgtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag Alignment from GeneWise AGCTCTACTGGACAGCCCCAGAGCTGCTGCGGCTTCGGGAGAGTCCCTGTTCTGGCACCCCTCAGGGAGACGTTTACAGCTTTGCCATTCTCCTGAGGGACTTGATCCACCAGCAGGCCCACGGGCCCTTTGAGGACCTCGAGGCAGCTCCAGAGG tctctcacagttgtcctgcagagctccacgacgcgcgttgtcgcccgcagAGCTTTACTGGACAGCACCTGAGTTACTGCAGCTGCAAAAGAGTCCCTGCTCTGGCACACCTCAGGGAGATGTGTACAGCATTACCATTCTCCTGAGGGACCTAATCCATCAGCAGGCACATGGGCCCTTTGAGGACCTTGAGGCGGTTCCGGAGGgtgaggccagaggatgccctgatggtggggcaagaagcctgtatggagag #### Gucy2g_ID11579_12 --> 0 - 0 Original Alignment GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt Alignment from CESAR GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt Alignment from Spaln_aa2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt Alignment from Spaln_nt2Genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt Alignment from Pairagon GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt Alignment from Exonerate_protein2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt Alignment from Exonerate_coding2genome GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt Alignment from GeneWise GATGTTATGAGGAACTCCGATCATGAGATAGATTGGATATTCAAGCTCTCCTTTGCGTATGACATAGTCAAT ttgtatgtcagctctaggctgcggagtgacatatctttatttgctatcagGATGTTATGAGGAATTCTGATCATGAGATAGACTGGATATTCAAGCTCTCCTTTGCATATGACATAGTCAATgtatgtttcccactgtagtattacattctatggttgcgcccttttgtagt #### Gucy2g_ID11582_9 --> 0 - 0 Original Alignment CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca Alignment from CESAR CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca Alignment from Spaln_aa2Genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca Alignment from Spaln_nt2Genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca Alignment from Pairagon CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca Alignment from Exonerate_protein2genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca Alignment from Exonerate_coding2genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca Alignment from GeneWise CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ctcgcatgtatgaaatgttatactgggcttacttatatggcatattttagCTGTCTCACCGAGGCACGCCTGTATCAAGACGTAATGTCAGTGATACATCCACTGTGAAGGCTTCTGCAGATTGTGGATCCCTGGTTAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTACCAGgtgagtgcgtactatcatcactaaacgaactgggacttgactacacttca #### Gucy2g_ID11583_8 --> 2 - 0 Original Alignment gtATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacaggcATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag Alignment from CESAR gtATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacaggcATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag Alignment from Spaln_aa2Genome GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacagGCATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag Alignment from Spaln_nt2Genome GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacagGCATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag Alignment from Pairagon GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacagGCATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag Alignment from Exonerate_protein2genome GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacagGCATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag Alignment from Exonerate_coding2genome GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacagGCATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag Alignment from GeneWise GTATGACAGTGACTGTGACTGCTGTGATCCCCACGGTGACGTTCCTGGTTCTTGCCTCGGCAGCTGCCATCACAGGTCTGATGTTATGGAGGTTGAGAGGGAAAGTGCAGAGCCATCCTGGAGACACCTGGTGGCAGATCCGTTATGACAGCATCACTCTTCTGCCTCAGCACAAA ctttcaactggacataggcaggcctgcaataatttttaaattcaatacagGCATGACAGTGACTGTGACTGCTGTGATCCCCACAGTGACATACCTAGTCCTTGCGTCAGCAGCTACCATCACAGGTCTGATGCTATGGTGGTTGAGAGGGAAAGTACAAAGCCATCTTGGGGACACCTGGTGGCAGATCCGCTATGACAGCATAACTCTTCTGCCTCAACACAAAgtattcatcacacttcctctttagcccataaccacaagagcagcacccag #### Gucy2g_ID11584_7 --> 1 - 1 Original Alignment aCCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAg acaataaacacattctatgctgaccacccacatctgctatcattactcaggCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAggtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca Alignment from CESAR aCCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAg acaataaacacattctatgctgaccacccacatctgctatcattactcaggCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAggtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca Alignment from Spaln_aa2Genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG acaataaacacattctatgctgaccacccacatctgctatcattactcagGCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAGgtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca Alignment from Spaln_nt2Genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG acaataaacacattctatgctgaccacccacatctgctatcattactcagGCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAGgtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca Alignment from Pairagon ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG acaataaacacattctatgctgaccacccacatctgctatcattactcagGCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAGgtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca Alignment from Exonerate_protein2genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG acaataaacacattctatgctgaccacccacatctgctatcattactcagGCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAGgtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca Alignment from Exonerate_coding2genome ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG acaataaacacattctatgctgaccacccacatctgctatcattactcagGCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAGgtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca Alignment from GeneWise ACCCTGGAGGAATGACTCGAACACCTCATGGCCCCATGGCTCCCTTCCTGAGTATAAACCTGGCTGTGGATTTCATAACGACCTTTGCAAAACGAAGCCACCCACTGTAGCAG acaataaacacattctatgctgaccacccacatctgctatcattactcagGCCCTGGAGGAACGAATCAAACACCTCATGGCCCCATGGCTCTCTGCCTGATTACAAACCTGGCTGTGGATTTTATAATGGCCTTTGTAAAACAAAGACACCTACAGTAACAGgtgagccatacctccaaatattggggaatgcaaaatgtgttttaagttca #### Gucy2g_ID11589_2 --> 0 - 1 Original Alignment GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGTGGGGGGCT---GTTGAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGg atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGggtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata Alignment from CESAR GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGTGGGGGGCTGTT---GAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGg atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGggtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata Alignment from Spaln_aa2Genome GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGTGGGGGGCTGTT---GAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGG atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGGgtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata Alignment from Spaln_nt2Genome GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGT---GGGGGGCTGTTGAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGG atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGGgtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata Alignment from Pairagon GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGTGGGGGGCTGT---TGAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGG atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGGgtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata Alignment from Exonerate_protein2genome GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGTGGGGGGCTGTT---GAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGG atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGGgtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata Alignment from Exonerate_coding2genome GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGTGGGGGGCTGTT---GAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGG atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGGgtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata Alignment from GeneWise GTTATTGGTTTATTGGCCTCTGAGTGGAACATCCCTTTGTTTGACTTCGTTGGACAAATGGCAGCCCTGAAAGACCACTTCTGGTGTGACACCTGCGTGACACTTGTGCCACCCAAGCAGGAAATCAGTGCGGTGCTTCGGGAAAGCCTGCGGTACCTGGGCTGGGAACATATCGGGGTGTTTGGAGGTTCCTCTGCAGATTCCTCCTGGGAACAAGTGGATGAGATGTGGGGGGCTGTT---GAGGATGGACTCCAGTTCCATTTCAACATCACTGCCAGCATGAGGTACAACAGCAGCAGCTCAGACCTTCTGCAGGAAGGCCTCAGGAACATGTCGTATGTCGCCAGGG atgttgggtgagcttcatcacaggaaaattccctatctcaactcctacagGTGATTGGTTTGTTGGCCTCTGAGTGGAACATTCCTCTGTTTGACTTTGTTGGACAAACAGCAGCCTTGAAGGATCACTTCTGGTGTGACACCTGTGTGACACTTGTGCCACCCAACCAAGAAATCAGTGCAGTACTTCGGGAGAGCCTGCGCTACCTGGGCTGGGAGCATATTGGGGTGTTTGGGGGTTCCTCCATAGACTCCACTTGGGAACAAGTAGATGAGATGTGGGGGGCTGTTGATGAGGATGGACTACAGTCCCATTTCAACATAACTGCCAGTATGAGGTACAACAGCAGCAGCTCAGACTTATTGCAGGAAAGCCTCAGGATCATGTCATATGTTACTAGGGgtaggtaggctggacatggacacaaaaatcaacagtttagctattgtata #### Habp2_ID12057_3 --> 2 - 1 Original Alignment atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cctctttgcattattcctctttgatcttttgtggtggggactggatacagatCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTggtatgtgtataactaagcatccctattctcatggaattcacaatgccacc Alignment from CESAR atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cctctttgcattattcctctttgatcttttgtggtggggactggatacagatCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTggtatgtgtataactaagcatccctattctcatggaattcacaatgccacc Alignment from Spaln_aa2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttttgtggtggggactggatacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTGgtatgtgtataactaagcatccctattctcatggaattcacaatgccacc Alignment from Spaln_nt2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttttgtggtggggactggatacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTGgtatgtgtataactaagcatccctattctcatggaattcacaatgccacc Alignment from Pairagon ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttttgtggtggggactggatacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTGgtatgtgtataactaagcatccctattctcatggaattcacaatgccacc Alignment from Exonerate_protein2genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttttgtggtggggactggatacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTGgtatgtgtataactaagcatccctattctcatggaattcacaatgccacc Alignment from Exonerate_coding2genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttttgtggtggggactggatacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTGgtatgtgtataactaagcatccctattctcatggaattcacaatgccacc Alignment from GeneWise AGTCATTGGGCTCTCACTGATGTCCTTCATTGCG---CCCCCAGACCCAGATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG CCTCTTTGCATTATTCCTCTTTGATCTTTTGTGGTGGGGACTGGATACAGATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGACTGTATCCTCAGAGGGGATACCTTCACTTGTAGCTGTCCCGCCCCCTTCTCAGGAAGCCGATGCAAGACTGgtatgtgtataactaagcatccctattctcatggaattcacaatgccacc #### Habp2_ID12064_10 --> 2 - 1 Original Alignment ctTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAg atgggacctcattcggttccctccagctaccagctcactctgttttacagctCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAggtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta Alignment from CESAR ctTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAg atgggacctcattcggttccctccagctaccagctcactctgttttacagctCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAggtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta Alignment from Spaln_aa2Genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG atgggacctcattcggttccctccagctaccagctcactctgttttacagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAGgtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta Alignment from Spaln_nt2Genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG atgggacctcattcggttccctccagctaccagctcactctgttttacagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAGgtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta Alignment from Pairagon CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG atgggacctcattcggttccctccagctaccagctcactctgttttacagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAGgtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta Alignment from Exonerate_protein2genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG atgggacctcattcggttccctccagctaccagctcactctgttttacagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAGgtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta Alignment from Exonerate_coding2genome CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG atgggacctcattcggttccctccagctaccagctcactctgttttacagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAGgtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta Alignment from GeneWise CTTTGCTCAAGTTAAAGCCAGTGGGTGGTCACTGTGCTCTGGAATCCAGATATGTGAAGACTGTATGTTTGCCCAGCGACCCCTTTCCCTCTGGAACTGAGTGCCACATCTCTGGCTGGGGTGTTACAGAAACAG atgggacctcattcggttccctccagctaccagctcactctgttttacagCTCTACTCAAGTTAAAGCCAGTGGGTGGACACTGTGCTCTAGAATCCAGATATGTGCAGACTGTATGTTTGCCCAGCGACCCCATTCCCTCTGGCACAGAATGCCACATCTCTGGATGGGGTGTTACAGAAACAGgtgggtgggtcttctacatggtggttcatacccacatgagaccaatacta #### Habp2_ID12065_11 --> 2 - 0 Original Alignment ggGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaaggtGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg Alignment from CESAR ggGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaaggtGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg Alignment from Spaln_aa2Genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaagGTGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg Alignment from Spaln_nt2Genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaagGTGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg Alignment from Pairagon GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaagGTGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg Alignment from Exonerate_protein2genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaagGTGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg Alignment from Exonerate_coding2genome GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaagGTGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg Alignment from GeneWise GGGAAGGGTCCCGCCAGCTCCTGGATGCTAAAGTCAAGCTAATCGCTAACCCTTTGTGCAACTCCCGACAACTCTATGACCACACCATCGATGACAGTATGATTTGTGCGGGGAACCTTCAGAAGCCCGGATCAGACACCTGCCAG catacatatccttctagctatcactgtaagaccttctgctctgttttaagGTGAAGGGTCTCACCAGCTCCTGGATCTTAAAGTCAAGCTGATTGCCAACCCTTTGTGTAACTCCCGCAAACTCTATGACCACACCATTGATGACAGTATGGTTTGTGCAGGGAACCTTCAGAAACCGGGTTCAGACACATGCCAGgtaagtaactcccatcagaagctcacagaatatagccagctcagtgggtg #### Hectd2_ID7146_4 --> 1 - 0 Original Alignment gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacaggGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa Alignment from CESAR gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacaggGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa Alignment from Spaln_aa2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa Alignment from Spaln_nt2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa Alignment from Pairagon GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa Alignment from Exonerate_protein2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa Alignment from Exonerate_coding2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa Alignment from GeneWise GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagaggctggtttgcctgtaatcggcccggtgcgcccttctctacagGGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtaaggaagggcatgcaaaagaaagatacttctccctcccttgtttcaaa #### Hectd2_ID7149_7 --> 1 - 0 Original Alignment tCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagtCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa Alignment from CESAR tCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagtCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa Alignment from Spaln_aa2Genome TCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagTCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa Alignment from Spaln_nt2Genome TCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagTCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa Alignment from Pairagon TCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagTCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa Alignment from Exonerate_protein2genome TCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagTCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa Alignment from Exonerate_coding2genome TCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagTCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa Alignment from GeneWise TCCACGAACAAAAGATGATCTTAGAGCATATTTTATACTGTTACAG catgccttaaagcactcaactgatactatgacagcatctctcttctgcagTCCACGGACAAAAGATGATCTTAGGGCACATTTTATATTGTTGCAGgtgagttgagacttatgaaacagtactataatctctgtgtgtggataaaa #### Hectd2_ID7159_15 --> 0 - 0 Original Alignment CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca Alignment from CESAR CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca Alignment from Spaln_aa2Genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca Alignment from Spaln_nt2Genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca Alignment from Pairagon CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca Alignment from Exonerate_protein2genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca Alignment from Exonerate_coding2genome CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca Alignment from GeneWise CTCATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTTCCTCCCTGCTGTTACAAAAAATTACTGAGCCCTCCTGTCGTACCAAGTGATCAGAGTACACCAGTAGGCATCTGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCT cctcattctttggtgactttgtgttcatccaaatctaccctcccacacagCTCATGGGATTAGCTGTTTATAACAGCATCACCTTGGATATTCATTTTCCTCCCTGCTGCTACAAAAAACTACTGAGCCCTCCTGTTGTACCAAGTGATCAGAGTACACCAGTAGGCATATGCAGTGTTACCATTGACGACTTGTGCCAGGTTATGCCTgtgaggttattgttatcaccttgctggttgtgttgtgctatctgccatca #### Hectd2_ID7161_17 --> 0 - 1 Original Alignment GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAg ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAggtaaggtcaacatccactccctggcttagatagcagatttatacctcccc Alignment from CESAR GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAg ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAggtaaggtcaacatccactccctggcttagatagcagatttatacctcccc Alignment from Spaln_aa2Genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgtaaggtcaacatccactccctggcttagatagcagatttatacctcccc Alignment from Spaln_nt2Genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgtaaggtcaacatccactccctggcttagatagcagatttatacctcccc Alignment from Pairagon GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgtaaggtcaacatccactccctggcttagatagcagatttatacctcccc Alignment from Exonerate_protein2genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgtaaggtcaacatccactccctggcttagatagcagatttatacctcccc Alignment from Exonerate_coding2genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgtaaggtcaacatccactccctggcttagatagcagatttatacctcccc Alignment from GeneWise GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgtcgttgtataggtgatgatcccagagtttctgttttctactctgtagGTTTTTCAAGAAGAATTTGGAGTAATTAAGTCCTATAACTTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgtaaggtcaacatccactccctggcttagatagcagatttatacctcccc #### Hectd2_ID7164_20 --> 1 - 2 Original Alignment aTACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACtg ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagaTACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACtggtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt Alignment from CESAR aTACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACtg ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagaTACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACtggtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt Alignment from Spaln_aa2Genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt Alignment from Spaln_nt2Genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt Alignment from Pairagon ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt Alignment from Exonerate_protein2genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt Alignment from Exonerate_coding2genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt Alignment from GeneWise ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaatacttcatttgaatggatcctgacctccctgtcacccccagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtgagttctgggcaagaacaaagttaatttgattggttggttgctctgtt #### Hells_ID7700_7 --> 0 - 0 Original Alignment GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg Alignment from CESAR GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg Alignment from Spaln_aa2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg Alignment from Spaln_nt2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg Alignment from Pairagon GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg Alignment from Exonerate_protein2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg Alignment from Exonerate_coding2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg Alignment from GeneWise GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG gatgcctatcaggctgcaccctatcatttatctcaatgttttctatttagGATGAAAGCTCTTCGACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgtgcgtagttgtcttctctttttctctcaaaatggtactttgtgtctctg #### Hells_ID7704_11 --> 1 - 0 Original Alignment cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagcTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca Alignment from CESAR cTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagcTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca Alignment from Spaln_aa2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca Alignment from Spaln_nt2Genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca Alignment from Pairagon CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca Alignment from Exonerate_protein2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca Alignment from Exonerate_coding2genome CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca Alignment from GeneWise CTTTGAGTCTTGGTTTGATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTACATATGCTGCACCAG actcttgggtttgcggccaaacctcaattgcaccttcttttcctttttagCTTTGAGTCTTGGTTTGATATCACTAGTCTTTCAGAAACTGCTGAAGATATTATAGCTAAAGAGAGAGAACAGAATGTTTTATATATGCTGCATCAGgtgggtatctaactacctcaatttagactatgtatgtttgtatatatcca #### Hells_ID7709_16 --> 0 - 0 Original Alignment GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat Alignment from CESAR GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat Alignment from Spaln_aa2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat Alignment from Spaln_nt2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat Alignment from Pairagon GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat Alignment from Exonerate_protein2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat Alignment from Exonerate_coding2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat Alignment from GeneWise GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT atcttcagcttcatacaggtcagtgtagcaccagttgtttgtttctttagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCATCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGTCTTATTCAGAAAGGGAAAAGAATgtcagtcctgacaagtgctactgtatggagctttccttcaccattaatat #### Hif1an_ID9065_3 --> 1 - 1 Original Alignment gTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAg ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcaggTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAggtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc Alignment from CESAR gTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAg ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcaggTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAggtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc Alignment from Spaln_aa2Genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcagGTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAGgtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc Alignment from Spaln_nt2Genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcagGTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAGgtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc Alignment from Pairagon GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcagGTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAGgtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc Alignment from Exonerate_protein2genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcagGTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAGgtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc Alignment from Exonerate_coding2genome GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcagGTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAGgtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc Alignment from GeneWise GTTGTATCTGCAGCAGACACTCAATGACACCGTGGGGAGGAAGATTGTCATGGACTTCTTGGGTTTTAACTGGAACTGGATCAATAAACAGCAGGGGAAACGCGGCTGGGGGCAGCTGACCTCTAACCTGTTGCTCATTGGCATGGAAG ccaggaccacacagtgacactgatgggggctgtgtcctctccctctgcagGTTATATCTGCAGCAGACACTCAATGACACTGTGGGGAGAAAGATAGTCATGGATTTCTTGGGTTTTAACTGGAATTGGATCAATAAGCAGCAGGGGAAACGTGGCTGGGGGCAGCTAACCTCTAACTTGTTGCTTATTGGTATGGAAGgtgagtcacaatagcaggcacacatggttttgtaccatgcgaacttctgc #### Hif1an_ID9066_4 --> 2 - 0 Original Alignment gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacaggaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc Alignment from CESAR gaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacaggaAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc Alignment from Spaln_aa2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacagGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc Alignment from Spaln_nt2Genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacagGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc Alignment from Pairagon GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacagGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc Alignment from Exonerate_protein2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacagGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc Alignment from Exonerate_coding2genome GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacagGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc Alignment from GeneWise GAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAAGGCCATAAGAGATGCATCTTATTTCCTCCGGATCAGTTCGAGTGCCTCTATCCATACCCTGTCCATCACCCCTGTGACAGGCAGAGCCAG tgtacagttaacacatggggatcattgcttcttgtcacccttctcaacagGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTTTTTGCCCAAATAAAGGGCCATGAAAGATGTATCTTATTCCCGCCTGATCAATTTGAGTGCCTCTATCCATTCCCTGTACAGCACCCCTGTGACAGGCAGAGCCAGgtaggattacgtggttgtccataactctgggctatatctttgccactccc #### Hnrnpul2_ID2403_7 --> 0 - 0 Original Alignment AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac Alignment from CESAR AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac Alignment from Spaln_aa2Genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac Alignment from Spaln_nt2Genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac Alignment from Pairagon AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac Alignment from Exonerate_protein2genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac Alignment from Exonerate_coding2genome AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac Alignment from GeneWise AATTTTGAGACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTGGGTGTGGCATTCCGAATTAGCAAGGAGTCTCTGGCAGATCGAGCCCTTCTACCCCATGTCCTTTGCAAGAATTGTGTCGTAGAATTAAACTTTGGTCAGAAGGAGGAGCCCTTTTTCCCACCACCAGAAGAGTTTGTGTTCATCCATGCTGTGCCTGTTGAGGAACGTGTGCGGACTGCAGTCCCTCCCAAGACCATAGAGGAGTGTGAG agcatggtgtatattcttgggcatgtcatatgcttggtgtttctttctagAATTTTGCAACTGAAGAAGTTGAGCTTTCCTTCTCCAAGAATGGAGAAGACTTAGGTGTGGCATTCCGAATTAGCAAGGAATCTCTGGCAGATCGAGCCCTCCTACCTCATGTCCTTTGTAAGAACTGTGTTGTAGAATTAAACTTTGGTCAAAAGGAGGAGCCCTTTTTTCCACCACCAGAAGCATTTGTGTTCATCCATGCTGTGCCTGTTGAGGAGCGTGTGCGGACTGCAGTCCCTTCCAAGACCATAGAGGATTGTGAGgtaagtcaaagtataggtttcaaactatagaagaagtggtaaatacatac #### Hnrnpul2_ID2405_9 --> 0 - 0 Original Alignment ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc Alignment from CESAR ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc Alignment from Spaln_aa2Genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc Alignment from Spaln_nt2Genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc Alignment from Pairagon ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc Alignment from Exonerate_protein2genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc Alignment from Exonerate_coding2genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc Alignment from GeneWise ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatcctgcaactgactatgtaagtacttatttttttcccctcacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTCATTCTTGATCAGgtgagtataaacagatctggagacaaaaatcttgcgtgaattccagattc #### Hnrnpul2_ID2406_10 --> 0 - 1 Original Alignment TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAg aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAggtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt Alignment from CESAR TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAg aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAggtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt Alignment from Spaln_aa2Genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt Alignment from Spaln_nt2Genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt Alignment from Pairagon TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt Alignment from Exonerate_protein2genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt Alignment from Exonerate_coding2genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt Alignment from GeneWise TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG aagtgactgctgttcaagacattctccatgctttttttattttaaatcagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTCAAGGCATTCTCCAGAAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttggaagatagagaatccactccatgcttagtgtaaccaatggtt #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagccATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tgggatgaactgatccagtattgctttgaatctttcttctttattcccagCCATGCAAGCTACAGTAGAGATGACTGTTAGCATGGCCCAGGTAGGTGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCACATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtaagggggaatggtagatgtgggctggaggtcaggattgaaagagacag #### Hoga1_ID8381_4 --> 0 - 0 Original Alignment GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag Alignment from CESAR GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag Alignment from Spaln_aa2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag Alignment from Spaln_nt2Genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag Alignment from Pairagon GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag Alignment from Exonerate_protein2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag Alignment from Exonerate_coding2genome GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag Alignment from GeneWise GTTGCTGACGTTTCTCCAATCCCTGTGGTGTTGTACAGTGTCCCAGCCAATACGGGGCTAGAGCTACCTGTGGATGCCGTGGTTACATTGTCTCAGCACCCAAATATCATCGGCTTGAAGGACAGTGGTGGAGAT ttgagcctgcagtgagacaaaggcttgctatctgaattattttgttcaagATTGCTGACGTTTCCCCAATCCCTGTAGTATTATACAGTGTCCCAGCCAATACAGGGCTAGAGCTACCTGTGGATGCTGTGGTTACATTGTCTCAACACCCAAATATCATTGGCCTGAAGGACAGTGGTGGAGATgtacccatctgcagcacccaatttgcccagtgtggtagcacttaccccag #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gcctctggtctggtgtccctgtctcaattagcatgtctgcttttcctcagAGCCCTGGCACCCCACTCACCCTAATTTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGCCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTCATCAAGAATCGGGTTGGGCAGGAGATTCAGgtatgttcacaggactaacatgtgccagttttggaggagatttagtgctg Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gcctctggtctggtgtccctgtctcaattagcatgtctgcttttcctcagAGCCCTGGCACCCCACTCACCCTAATTTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGCCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTCATCAAGAATCGGGTTGGGCAGGAGATTCAGgtatgttcacaggactaacatgtgccagttttggaggagatttagtgctg Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gcctctggtctggtgtccctgtctcaattagcatgtctgcttttcctcagAGCCCTGGCACCCCACTCACCCTAATTTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGCCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTCATCAAGAATCGGGTTGGGCAGGAGATTCAGgtatgttcacaggactaacatgtgccagttttggaggagatttagtgctg Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gcctctggtctggtgtccctgtctcaattagcatgtctgcttttcctcagAGCCCTGGCACCCCACTCACCCTAATTTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGCCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAACA---ACAAGTTCATCAAGAATCGGGTTGGGCAGGAGATTCAGgtatgttcacaggactaacatgtgccagttttggaggagatttagtgctg Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gcctctggtctggtgtccctgtctcaattagcatgtctgcttttcctcagAGCCCTGGCACCCCACTCACCCTAATTTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGCCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAACA---ACAAGTTCATCAAGAATCGGGTTGGGCAGGAGATTCAGgtatgttcacaggactaacatgtgccagttttggaggagatttagtgctg Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gcctctggtctggtgtccctgtctcaattagcatgtctgcttttcctcagAGCCCTGGCACCCCACTCACCCTAATTTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGCCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTCATCAAGAATCGGGTTGGGCAGGAGATTCAGgtatgttcacaggactaacatgtgccagttttggaggagatttagtgctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG gcctctggtctggtgtccctgtctcaattagcatgtctgcttttcctcagAGCCCTGGCACCCCACTCACCCTAATTTTGTACCAACTGCTGGATGGATTCTCCCTCCTGGAGAAAAAGTTAAAGGAGGGCCAGGAGGCTGGAAGTGCCCTACGATCCCAGCCCTTTGTGGCTGACCCACGCCAGAAC---AACAAGTTCATCAAGAATCGGGTTGGGCAGGAGATTCAGgtatgttcacaggactaacatgtgccagttttggaggagatttagtgctg #### Hpse2_ID8648_10 --> 0 - 2 Original Alignment GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACaagtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct Alignment from CESAR GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACaagtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct Alignment from Spaln_aa2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct Alignment from Spaln_nt2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct Alignment from Pairagon GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct Alignment from Exonerate_protein2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct Alignment from Exonerate_coding2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct Alignment from GeneWise GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA taagtcttccctggtcggtctcctgacttgtgtttttactctattactagGACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtacgttttccctcaaatggtgggagtagatgatcacccaatagcagcct #### Hrasls5_ID2196_2 --> 2 - 2 Original Alignment acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagacTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAgggttagtgtctctgaagatttcagtagggataacagtcttactatgagggc Alignment from CESAR acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagacTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAgggttagtgtctctgaagatttcagtagggataacagtcttactatgagggc Alignment from Spaln_aa2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagACTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAGGgttagtgtctctgaagatttcagtagggataacagtcttactatgagggc Alignment from Spaln_nt2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagACTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAGGgttagtgtctctgaagatttcagtagggataacagtcttactatgagggc Alignment from Pairagon ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagACTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAGGgttagtgtctctgaagatttcagtagggataacagtcttactatgagggc Alignment from Exonerate_protein2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagACTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAGGgttagtgtctctgaagatttcagtagggataacagtcttactatgagggc Alignment from Exonerate_coding2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagACTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAGGgttagtgtctctgaagatttcagtagggataacagtcttactatgagggc Alignment from GeneWise ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG agcagagtgtattgttcatggagctcccccttgacctccatcaccttcagACTCAGCAGGTTCTCAAGCACTGTTTGTCCAGTTCTTGCCAAAACAACTCAAGCAAGACCGCCAATTGGAACAGGCCCGAAGCTTCCAGCAAGGgttagtgtctctgaagatttcagtagggataacagtcttactatgagggc #### Hspa12a_ID12807_8 --> 2 - 1 Original Alignment ctAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAg caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagctAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAggtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac Alignment from CESAR ctAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAg caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagctAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAggtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac Alignment from Spaln_aa2Genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagCTAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac Alignment from Spaln_nt2Genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagCTAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac Alignment from Pairagon CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagCTAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac Alignment from Exonerate_protein2genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagCTAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac Alignment from Exonerate_coding2genome CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagCTAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac Alignment from GeneWise CTAAGGAACATGTTCGACGTAACCGGCAGAGTCGGACCTTTTTGGTGGAGAATGTCATAGGAGAAATCTGGTCTGAGCTGGAGGAAG caaactgtcttatgcctggcccattctaactcttctgtgtctactaacagCTAAGGAACATCTTCGACGTAACAGACAGAGTAGGACCTTTTTGGTGGAGAATGTCATAGGAGAGATCTGGTCTGAGCTGGAGGAAGgtaagttgtagggcctttatcctcatcttatcatagctttttccttgaac #### Hspa12a_ID12811_4 --> 1 - 0 Original Alignment gAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacaggAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct Alignment from CESAR gAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacaggAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct Alignment from Spaln_aa2Genome GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacagGAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct Alignment from Spaln_nt2Genome GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacagGAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct Alignment from Pairagon GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacagGAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct Alignment from Exonerate_protein2genome GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacagGAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct Alignment from Exonerate_coding2genome GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacagGAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct Alignment from GeneWise GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG cattgtgctgaataaactggtggtaaacgtcgttcttttattctccacagGAGATGGGAGGGAGGTGACCCTGGGGTCTCCAACCGCAAAACCCCAACTGCCATTCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGGGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGGgtgagcgacccttttagggggggagcaaggtattgcattatagggatcct #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc #### Incenp_ID2607_12 --> 0 - 0 Original Alignment GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca Alignment from CESAR GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca Alignment from Spaln_aa2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca Alignment from Spaln_nt2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAA------GGAAGATGTAGAGGCAAAAAGGA---AGGAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca Alignment from Pairagon GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAA------GGAAGATGTAGAGGCAAAAAGGA---AGGAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca Alignment from Exonerate_protein2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca Alignment from Exonerate_coding2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca Alignment from GeneWise GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG tgctcacactaacagggagactgcttgaaaagcattgatcttctcaacagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCCAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAGGCTCGTAGGCTCAGGTGGGTCCAACAAgtgagtttggattgaacatagaaacagttggcaaaacagcaattggtgca #### Jak2_ID6230_6 --> 0 - 0 Original Alignment GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc Alignment from CESAR GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc Alignment from Spaln_aa2Genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc Alignment from Spaln_nt2Genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc Alignment from Pairagon GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc Alignment from Exonerate_protein2genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc Alignment from Exonerate_coding2genome GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc Alignment from GeneWise GACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAGTATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTGTCCATAAACAAGATGGTAAAGTTTTG tgtgaaagtacaattattatgtcactgtgctgtatgtgtttccactgcagGATGTACAGTTATATTGTGGTTTCCCTGATATTATTGATGTTAGTATTAAGCAAGCCAACCAAGAATGCTCAAATGAGAGTAGAATTGTTACAGTCCATGAGCAAGATGGTAAGGTTCTGgtaagtccgtatacacttgctggtccgtatacacttgctgtgtctccatc #### Jak2_ID6235_11 --> 0 - 0 Original Alignment AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc Alignment from CESAR AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc Alignment from Spaln_aa2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc Alignment from Spaln_nt2Genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc Alignment from Pairagon AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc Alignment from Exonerate_protein2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc Alignment from Exonerate_coding2genome AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc Alignment from GeneWise AATGAAAGTCTTGGCCAAGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGAGATTATGGTCAACTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGCACATAGGAACTATTCAGAG ttatcaatcgttgtgctcttcttgtttccacagtctctttattctctcagAATGAGAGTCTTGGCCACGGTACTTTTACAAAAATTTTTAAAGGTGTAAGAAGAGAAGTTGGGGATTATGGCCAATTGCACAAAACGGAAGTTCTTTTGAAAGTCCTAGATAAAGGACATAGGAACTATTCAGAGgtaagtttagttggactcattacatagatttgaacaaaatggataaattc #### Jak2_ID6236_12 --> 0 - 1 Original Alignment TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGagtatggagggcagcagataagggcagacatataagtcgcaggcttggatg Alignment from CESAR TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGagtatggagggcagcagataagggcagacatataagtcgcaggcttggatg Alignment from Spaln_aa2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtatggagggcagcagataagggcagacatataagtcgcaggcttggatg Alignment from Spaln_nt2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtatggagggcagcagataagggcagacatataagtcgcaggcttggatg Alignment from Pairagon TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtatggagggcagcagataagggcagacatataagtcgcaggcttggatg Alignment from Exonerate_protein2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtatggagggcagcagataagggcagacatataagtcgcaggcttggatg Alignment from Exonerate_coding2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtatggagggcagcagataagggcagacatataagtcgcaggcttggatg Alignment from GeneWise TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA tgttgaggatgtaccctcacatttcttatgtttccttttcccacaaacagTCTTTCTTCGAAGCAGCAAGCATGATGACTCAGCTTTCTCACGAACATTTGGTTTTGAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtatggagggcagcagataagggcagacatataagtcgcaggcttggatg #### Jak2_ID6241_17 --> 2 - 0 Original Alignment atTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagatTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg Alignment from CESAR atTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagatTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg Alignment from Spaln_aa2Genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg Alignment from Spaln_nt2Genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg Alignment from Pairagon ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg Alignment from Exonerate_protein2genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg Alignment from Exonerate_coding2genome ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg Alignment from GeneWise ATTATGAACTACTAACAGAAAATGACATGCTACCAAACATGAGAATAGGTGCCCTAGGGTTTTCTGGTGCTTTTGAAGACAGGGACCCTACACAGTTTGAAGAGAGACACTTGAAGTTTCTACAGCAGCTTGGCAAA ttagagacagtatctggctgtttactgttaatgagtcctctcccctgcagATTACGAACTACTCACAGAGAATGACATGCTTCCAAACATGAGAATAGGTGCCCTAGGCTTTTCTGGTGCTTTTGAAGATAGGGACCCTACACAATTTGAAGAGAGACATCTGAAATTTCTACAGCAGCTTGGCAAAgtgagatgtcataagcttttctggaataagaggttttctggaacaagacg #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtactacaaaacactgtgtcttcctcatgatttctagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGTCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtaagtaccacttcacatgtctcttgtacatgctgatctaagtaattata #### Jak2_ID6244_20 --> 0 - 2 Original Alignment GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCtg ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCtggtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt Alignment from CESAR GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCtg ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCtggtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt Alignment from Spaln_aa2Genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGgtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt Alignment from Spaln_nt2Genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGgtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt Alignment from Pairagon GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGgtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt Alignment from Exonerate_protein2genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGgtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt Alignment from Exonerate_coding2genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGgtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt Alignment from GeneWise GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG ccacataaactatcgttatattggcttttgcttctccgccttgtctctagGGGATGGAATTTCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAAAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAAAGCCCCATATTCTGgtaacttgaacatggtgggccttccaaaaatagcaacaattatcctatgt #### Kank1_ID5455_2 --> 2 - 1 Original Alignment aaAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTAT---AACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAg gtctgacctatgtaatgcatacgatgtcacgtcctcccccactcctctagaaAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAAC---AAAGACAGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGC------AATTATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCTA---------ATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGAG---ACTCATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAggtaaggggtaccctcaccccactcctctggatgagaataaagacttggag Alignment from CESAR aaAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAg gtctgacctatgtaatgcatacgatgtcacgtcctcccccactcctctagaaAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAACAAA---GACAGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGCAAT---TATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCTA---------ATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGAG---ACTCATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAggtaaggggtaccctcaccccactcctctggatgagaataaagacttggag Alignment from Spaln_aa2Genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG gtctgacctatgtaatgcatacgatgtcacgtcctcccccactcctctagAAAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAACAAA---GACAGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGCAAT---TATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCTA---------ATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGAG---ACTCATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAGgtaaggggtaccctcaccccactcctctggatgagaataaagacttggag Alignment from Spaln_nt2Genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG gtctgacctatgtaatgcatacgatgtcacgtcctcccccactcctctagAAAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAACA---AAGACAGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGCAAT---TATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCT---------AATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGA---GACTCATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAGA---TGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAGgtaaggggtaccctcaccccactcctctggatgagaataaagacttggag Alignment from Pairagon AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG gtctgacctatgtaatgcatacgatgtcacgtcctcccccactcctctagAAAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAACA---AAGACAGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGCAAT---TATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCT---------AATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGA---GACTCATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAGA---TGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAGgtaaggggtaccctcaccccactcctctggatgagaataaagacttggag Alignment from Exonerate_protein2genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG gtctgacctatgtaatgcatacgatgtcacgtcctcccccactcctctagAAAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAACAAA---GACAGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGCAAT---TATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCTA---------ATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGAG---ACTCATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAGgtaaggggtaccctcaccccactcctctggatgagaataaagacttggag Alignment from Exonerate_coding2genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG gtctgacctatgtaatgcatacgatgtcacgtcctcccccactcctctagAAAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAACAAA---GACAGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGCAAT---TATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCTA---------ATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGAG---ACTCATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAGgtaaggggtaccctcaccccactcctctggatgagaataaagacttggag Alignment from GeneWise GCTTATACCACAAAAGTTAATGGCTGTGCTGCAGAAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG gtctgacctatgtaatGCATACGATGTCACGTCCTCCCCCACTCCTCTAGAAAAAGCAGATGGAGTTCTGAATGGAGAACATAACAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTCAGCTAGACTTAGATTTTGTTAAGTATGTTGATGATATACAAAAGGGAAATATTATCAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGACCATTCCAGGCCATCAAAGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAACAAAGAC---AGCAAGCAGTGTCCGACCTTCCTGCTGGCCAGAAGCCATGTCACCTCAACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCAGAAAACCAACACCTGCTGCCCCCTCCCTCAGCACAACTCCCCAGGCATAACCTCCATGTCACCAAGACCTTGATGGAGACCCATGGAAGATTAGAAGAAGGGCAAGTTACCATGCAGATGGCACCAGGTGACGTTAGAAGGCCTAGGTTGGCAAGTTTTGGAGGCACAGGCTCCACAAGCTCTATTCCATCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACACCAGCTCCAGAACGGCTACCAAGGCAAT---TATTACAACAGCTATGTCCCAGCAGCCCCTACTACATCTTCTATGGGTAGCTCTGCCCGGCACACCCCATTGTGTTCAGGGATCTCCACCCCAGTGACCAATGTGAGCCCCATGCATCTGCAGCACATCCGAGAGCAGATGGCTATTGCCTTACAACACCTGAAGGATCTTGAGGAGCAGGTGAGGACCATCCCGGTGCTCCAAGTCAAGATCTCTGTCTTACAAGAAGAAATGAGGCAGTTGGCTTCAGAGTTGAAAAGCCAGAGGGCCTCATCCCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTACAGTGCAGGTAATGCCTCCCAGCTGGAACTACTTGCCCGAGCACGGAGAGGCAGTGGGGAATTATACATTGATTATGAGGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAGTTTCAACAGCTA---------ATGCAGGCACTGGAGCAAAAGATTCAGGATAGCAGCTGTGAGGTAGCATCAGAGCTCAGAGGGAATGGGCAGTGTCCATCCCGGGAGTGCAAGTCTGTGGCTGTGGGTAGTGATGAGAATATGAATGATGTTGTTGTGTACCACAGGGACTTACGGGCTTGCAAGGATACAGCTGTAGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCAATGCTTGGAGTTATCACTGAAGCTGATAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTTTACCGTCTAGAAGTACAACTTAAAGAGACT---CATGACCGTGAGATGACCAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAGAAAGTTGACAAGGCCACAAAGGTTCAACCATTGGTCTTTAGCAAATTGGTGGAGGCACTGGTACCAACAAGAGATCAAATGGTAGGCACTCATGTGGACACAAGGGAGTCATGTGCTGGCACGTCTGTGCAAACGAGTAGTATAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCTGAGCTGCCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCCCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGAGTGATCTGGCACTCCTTAAAACTAACTTGAACCTCAAAGTCGTGCGATCTATTGGCTGTGGAGATTGTTCTGTGGCTGTGATTGTTTGTTTCCCCAAGGAATGCACCTCACGTAGCATGAACACAGAGGCTGTAGGCCAAGAGGAAGCAGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCACACCAGCACCAATCTAGAGCAGGTAGACCTGTGCACTAACACAGAGGCAGCAACCCTAGTAGAGTCCTGTACCAATACTCTCCTAAGTACCATAGACAGGAAGACAAGCACCCAGACTGTAGAGATGCGAACATTGGCTATTGGAGAGGGCCGTGTGAGAGACATAAACCCCTCCACGAAGACTCAGTCTGTTGGTGCTGGGACAGTGCTGTCTGGCAACTCCGAATTTGCAAGGCCATGTGCAGTGAAGACCAAGGAGTCAGGAGTGGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAAATGCGAACCATAGCATGCGGTCCTCCACAGTTGACTGTGGGGTTAATAGGGAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCAGGTTGCATCTGGAATGGTGACAGGCTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGATCAACAGACACTTCTGGTTGAGAACTATGGCGAGCTGGCAGAGGCATTTGGGGAGCCTCATTCGCAGATTGGCTCCCTCAACTCACAACTCATAAGCACCTTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTTAGGAAGTCTGACTTCCAAAAACCCAGTCTGGGTAAAACTGCAGgtaaggggtaccctcaccccactcctctggatgagaataaagacttggag #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcggcattccctcctcattttgctttcttctctagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAACTACCTAAAAAAGAGGCCCAGACACCCACCAAGAATGGACTCCCTGGGTCCCACCCTGGCTCTCCCAAAAGGGAGGTGgtgtgtagattgcccatttcttcctacctctctggtccatcttgtcttcc #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga #### Kcnk18_ID12922_2 --> 2 - 1 Original Alignment tgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGg gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagtgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGggtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa Alignment from CESAR tgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGg gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagtgGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGggtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa Alignment from Spaln_aa2Genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGG gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGGgtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa Alignment from Spaln_nt2Genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGG gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGGgtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa Alignment from Pairagon TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGG gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGGgtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa Alignment from Exonerate_protein2genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGG gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGGgtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa Alignment from Exonerate_coding2genome TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGG gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGGgtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa Alignment from GeneWise TGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCATCTGCAACACCTCAAGCCCCAGTGGCTCAAGGCGCCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACAGTGG gcaaaaatctctggacaggtgtcccttctgagctcctatgctggttgcagTGGTTGAAGGTAGCAGGAAGAACTTGTGTGAGCACCTGCAACACCTCAAGCCCCAGTGGCTGAAGGCACCCCAGGACTGGTCCTTCCTGAGCGCTCTCTTCTTCTGCTGCACAGTGTTCAGCACGGTGGgtaagtgtatacaatgcacgttgtcaagggaggggctcatcctactgtaa #### Kdm2a_ID504_16 --> 0 - 2 Original Alignment AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAAtg gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAAtggtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc Alignment from CESAR AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAAtg gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAAtggtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc Alignment from Spaln_aa2Genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAATGgtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc Alignment from Spaln_nt2Genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAATGgtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc Alignment from Pairagon AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAATGgtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc Alignment from Exonerate_protein2genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAATGgtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc Alignment from Exonerate_coding2genome AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAATGgtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc Alignment from GeneWise AAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTCTTACGGCCCCTGAGGAGCTGCGAGGAGCCTCTCACACCCCCGCCTCACTCACCTACTTCCATGCTGCAGCTCATCCACGACCCGGTTTCTCCCCGGGGTATGGTGACTCGGTCATCCCCTGGGGCTGGCCCCAGCGACCACCACAGTGCCAGCCGTGATGAACGCTTCAAACGGCGGCAGTTGCTGCGGCTACAAGCCACCGAGCGCACCATGGTACGGGAAAAGGAGAACAATCCCAGCGGCAAAAAGGAGCTGTCTGAAGTTGAGAAAGCCAAGATCCGGGGATCGTACCTCACTGTCACTCTACAGAGGCCCACCAAAGAGCTCCACGGGACATCCATTGTGCCCAAGCTGCAGGCCATCACGGCCTCCTCTGCCAACCTTCGCCCTAACCCCCGCGTGCTAATGCAGCACTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGAGGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGTTGGGCTCAGGATGGAGACGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTCCGCTACCTCAGCCGCAAAGAACTTTGTGAATGTATGCGAGTGTGCAAGACATGGTATAAATG gcttgtgagaattaaagatgagtagtgtcccatgggtcccttccctccagAAGCGGAAAATAGAAGAGAGTGATGAAGAAGCTGTACAAGCCAAAGTATTACGGCCCCTGAGGAGCTGCGAAGAACGTCTCACTCCCCCACCTCACTCACCTACTTCCATGCTGCAGCTCATCCATGACCCGGTATCTCCCCGGGGTATGGTAACTCGGTCATCCCCTGGGGCTGGCCCCAGCGATCACCACAGTGCCAGCCGTGATGAGCACTTCAAACGGCGGCAGTTGCTGCGGCTCCAAGCCACTGAACGCGCCAAGGTACGGGAGAAGGAGAACAATCCCAGTGGCAAAAAGGAGCTGTCTGAAGTCGAGAAAGCCAAGATCCGGGGATCATACCTCACTGTCACTTTACAGAGGCCCAGCAAAGAACTCCATGGGACATCCATTGTGCCCAAGTTACAAGCCATCACAGCTTCTTCTGCCAACCTTCGCCCTAACCCCCGCGTACTAATGCAGCATTGCCCAGCCCGAAACCCCCAGCATGGGGATGAGGAGGGGCTTGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAGTGCAGAGGATGGGGGTGCAGCCAGGCTGAATGGCCGGGGCAGCTGGGCTCAGGATGGAGATGAAAGCTGGATGCAGCGGGAGGTCTGGATGTCTGTCTTTCGCTACCTTAGCCGCAAAGAACTATGTGAATGTATGCGGGTGTGCAAGACATGGTATAAATGgtactgaggggtgcagagggcaacaagcaggtgggagggcttctgtgctc #### Kdm2a_ID505_15 --> 0 - 0 Original Alignment ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc Alignment from CESAR ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc Alignment from Spaln_aa2Genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc Alignment from Spaln_nt2Genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc Alignment from Pairagon ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc Alignment from Exonerate_protein2genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc Alignment from Exonerate_coding2genome ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc Alignment from GeneWise ATGGATGGAGAGGGGTTGCTGAACGAGGAATTGCCAAATTGCTGGGAGTGTCCAAAGTGTTACCAGGAAGACAGCTCGGACAAAGCCCAG tacaaagacagcactgaccaagcttctaatttaaatgaactttttgacagATGGATGGAGAGGGGTTGCTCAATGAGGAATTGCCAAACTGTTGGGAATGTCCCAAGTGTTATCAAGAGGATAGCTCAGATAAAGCACAGgtacaggaaatgttacagtttgccctttgcattaatatctcaaggcttcc #### Kdm2a_ID506_14 --> 0 - 0 Original Alignment CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata Alignment from CESAR CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata Alignment from Spaln_aa2Genome CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata Alignment from Spaln_nt2Genome CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata Alignment from Pairagon CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata Alignment from Exonerate_protein2genome CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata Alignment from Exonerate_coding2genome CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata Alignment from GeneWise CCCAGACTGCCTCATTCAGTTACGTGTTCTCTCTGTGGAGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGCATCTGCAACGAGATAGTTCATCCTGGCTGCCTCCAG atggattgaaagtttcagaacccagtgttgtaaactataatttatttcagCCCAGACTGCCTCATACGGTTACATGTTCTCTCTGTGGTGAAGTAGATCAGAATGAAGAGACCCAGGACTTTGAAAAGAAACTCATGGAATGCTGTATCTGCAATGAGATAGTTCATCCTGGTTGCCTCCAGgtaagtcagtgtatgggcccttgataaggcattgtaaaacctgtcttata #### Kdm2a_ID510_11 --> 2 - 0 Original Alignment atATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagatATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg Alignment from CESAR atATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagatATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg Alignment from Spaln_aa2Genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg Alignment from Spaln_nt2Genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg Alignment from Pairagon ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg Alignment from Exonerate_protein2genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg Alignment from Exonerate_coding2genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg Alignment from GeneWise ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ggcttttcccgttactagtaagttagctaaaaatgccatgttttcttaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCAGGGATCCCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtaaggtgcctttgacgtacacatagaagttgcatttcttaatctatatg #### Kdm2a_ID511_10 --> 0 - 1 Original Alignment GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGggtacgttcaataaagtgatcttataagacattctggagctgacaacttat Alignment from CESAR GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGg ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGggtacgttcaataaagtgatcttataagacattctggagctgacaacttat Alignment from Spaln_aa2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGGgtacgttcaataaagtgatcttataagacattctggagctgacaacttat Alignment from Spaln_nt2Genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGGgtacgttcaataaagtgatcttataagacattctggagctgacaacttat Alignment from Pairagon GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGGgtacgttcaataaagtgatcttataagacattctggagctgacaacttat Alignment from Exonerate_protein2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGGgtacgttcaataaagtgatcttataagacattctggagctgacaacttat Alignment from Exonerate_coding2genome GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGGgtacgttcaataaagtgatcttataagacattctggagctgacaacttat Alignment from GeneWise GTTCCAAATAAATTCCGTTACCCATTTTACTATGAAATGTGTTGGTATGTGTTGGAGCGCTATGTATACTGCATAACCAACCGATCCCACCTAACTAAGGATTTTCAGAAAGAATCCCTTAGCATGG ccttgagaagtggctcaacaacatcttccatgctgttccaccttccctagATTCCCAATAAATTCCATTACCCATTTTATTATGAAATGTGTTGGTATGTGTTGGAGCGTTATGTATACTGCATAACCAACCGATCACACCTAACTAAAGATTTCCAGAAAGAATCACTTAGCATGGgtacgttcaataaagtgatcttataagacattctggagctgacaacttat #### Keg1_ID3445_2 --> 0 - 0 Original Alignment GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt Alignment from CESAR GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt Alignment from Spaln_aa2Genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt Alignment from Spaln_nt2Genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt Alignment from Pairagon GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt Alignment from Exonerate_protein2genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt Alignment from Exonerate_coding2genome GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt Alignment from GeneWise GTTTATGGGACTGTCTTCCACATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAATACTGTTGTTATTCGACCCCAGGAAGAG tgaaaaaccaggatcattaaatggttccggccttctctctctccttgtagGTCTATGGGACTGTCTTCCATATCAATCAGGGAAACCCATTCAAGCTCAAGACTTTGGTGGACAAATGGCCTGATTTTAACACTGTTGTGATTCGGCCACAGGAAGAGgtaaaagccaatggatagtaattatgatgaaaggaccaagtaatgatttt #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTgtgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTgtgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC caattccttagtctcttcagctgagtattgtcctgtaacttgcctcatagGTGTTTGGAGCATCTACAAAACAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTATAATTGTACCATTTCTGTgtgaggaacaactttcttctcaagtttggacgatacgtatgggtgtatct #### Kif11_ID7323_13 --> 0 - 1 Original Alignment TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTggtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg Alignment from CESAR TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTg actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTggtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg Alignment from Spaln_aa2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg Alignment from Spaln_nt2Genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg Alignment from Pairagon TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg Alignment from Exonerate_protein2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg Alignment from Exonerate_coding2genome TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg Alignment from GeneWise TTGCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGTCTACATTCTAAACTGGACCGCAAGAGAGCAATCGATGAGCACAACGCTGAAGCTCAGGAGAGCTTTGGCAAAAACCTCAACAGTCTGTTTAATAATATGGAAGAATTGATTAAGGATGGCAGTGCGAAACAAAAGGCCATGCTAGACGTTCATAAGACACTGTTTG actgctgttatattgtttctagtttgttccttccttcctgtttctcacagTTTCTTAACACGGTTAAAGAAACCACCAGGGCTGTATCTGGGCTACATTCTAAACTGGATCGCAAGAGAGCTATTGATGAGCACAATGCTGAAGCTCAGGAGAGTTTTGGCAAAAACCTCAACAGTCTTTTTAATAATATGGAAGAATTGATTAAGGATGGCAGCGCGAAACAAAAGGCCATGCTAGATGTTCATAAGACACTGTTTGgtaaatgtgagccctcctatggtagttgattctatggctgtgtgctcatg #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacaggaCACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAACAGG---------TCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAggtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacaggaCACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAggtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAACAG---------GTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAACAG---------GTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Exonerate_coding2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagtCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagtCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtcgaatgaaaatatttgtgtgtttaacattgtctcctagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagttgggtcattttgtaagttgggagtttttttggaatgaaagtctt #### Kif20b_ID7007_12 --> 0 - 0 Original Alignment GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGAA---GTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact Alignment from CESAR GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGAA---GTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact Alignment from Spaln_aa2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGAA---GTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact Alignment from Spaln_nt2Genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGA---AGTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact Alignment from Pairagon GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGA---AGTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact Alignment from Exonerate_protein2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGAA---GTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact Alignment from Exonerate_coding2genome GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGAA---GTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact Alignment from GeneWise GTCTATGTTCCGGATACTTTAAGTTCTTCTCAAGAGAAATCTTTTGCATCTAACAAATCTTTACAAGATGTATCATTAGACAGTAATTTGGACAATAAAATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAATAGTCTAGAAGATGTGCTTGAAAATGAAGATTTGGTTGAGGACTTAGAAGAAAATGAAGAAACACAAAACATGGAAACGGAACTTACAGATGAAGATAGTGATAAGTCATTAGAGGAATGCAGAGTTTCCACCTGCCACAAAAAGAACAAG aaaaagttagttccttttctcttatgaggataaacctttttggcttacagGTTTATGTTCCAGATACTTTAAGTCCTTCCCAAAAGAAGTCCTTTGCATCTAATAAATCCTTACAAGAAGTTTCATTAGATAGTAATCTTGACAATAAGATACTAAATGTAAAAAGAAAAACTGTTTCATGGGAAAACAGCCTAAGAGATGTGCTTGAAAATGAAGAA---GTTGAGGATTTAGAAGAAAATGAAGAAACTCAAAACATGGAAATAGAACTTACTGATGAAGACAGTGACAGGTCATTGGAGGAATGCAGGGTTTCCACTTGCCATAAGAAGAACAAGgtaagttttagtaccttctgaacttatttgctctgaggttaggagttact #### Kif20b_ID7014_19 --> 1 - 0 Original Alignment gTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAGAAGTTCATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAG gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacaggTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAGTTTATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAGgtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga Alignment from CESAR gTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAGAAGTTCATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAG gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacaggTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAGTTTATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAGgtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga Alignment from Spaln_aa2Genome GTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAGAAGTTCATTGATGCCAAAAAGCAGATTGAGCAG gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacagGTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAGTTTATTGATGCCAAAAAGCAGATTGAGCAGgtacagagggaggtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga Alignment from Spaln_nt2Genome GTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAG---- gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacagGTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAgtttattgatgccaaaaagcagattgagcaggtacagagggaggtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga Alignment from Pairagon GTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAGAAGTTCATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAG gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacagGTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAGTTTATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAGgtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga Alignment from Exonerate_protein2genome GTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAGAAGTTCATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAG gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacagGTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAGTTTATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAGgtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga Alignment from Exonerate_coding2genome GTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAGAAGTTCATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAG gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacagGTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAGTTTATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAGgtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga Alignment from GeneWise GTTGAAAGAGGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAGAAGTTCATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAG gcagccaatggcaatggtgtaggaagttgatccttcctcctgtctcacagGTTGAAAGAAGAGCTTGCTGCAAACTCTATTCTTACTCAGAATCTCAAAGCAGACCTTCAGAAGAAGGAAGAAGATTGTGCTGAGCTGAAAGAAAAGTTTATTGATGCCAAAAAGCAGATTGAGCAGGTACAGAGGGAGgtaagttaaagtgagagctatgtgtgctgttgggcatatctcaaagcaga #### Kif20b_ID7017_22 --> 2 - 1 Original Alignment atCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAg aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagatCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAggtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc Alignment from CESAR atCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAg aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagatCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAggtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc Alignment from Spaln_aa2Genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAGgtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc Alignment from Spaln_nt2Genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAGgtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc Alignment from Pairagon ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAGgtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc Alignment from Exonerate_protein2genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAGgtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc Alignment from Exonerate_coding2genome ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAGgtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc Alignment from GeneWise ATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGACTGACGCTAGTGGAGCAGGAGCAGACTCAGGCAGAGCAGGACCGGGTGCTCGAGGCCAAGTCAGAGGAAGCAGACTGGCTAGCCACAG aaatgactctggctgtctgtgatgtaatccctgactgtcacctcctgtagATCTCAGTGTTAAGGAGAAGCTGGTTGAAGACATGCGATTAACACTAGTAGAACAAGAGCAGACTCAGTCAGAGCAGGACCGCGTGCTCGAGGCCAAATCAGAGGAAGCGGACTGGCTAGCCACAGgtaagaataggaaaagggcatactggaccgcagctgtaattgaaccaatc #### Kif20b_ID7018_23 --> 2 - 0 Original Alignment aaTTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagaaTTGGATAAATGGGAACAAAAGTTCAAAGAG---GAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc Alignment from CESAR aaTTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagaaTTGGATAAATGGGAACAAAAGTTCAAAGAG---GAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc Alignment from Spaln_aa2Genome AATTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagAATTGGATAAATGGGAACAAAAGTTCAAAGAG---GAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc Alignment from Spaln_nt2Genome AATTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagAATTGGATAAATGGGAACAAAAGTTCAAAGA---GGAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc Alignment from Pairagon AATTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagAATTGGATAAATGGGAACAAAAGTTCAAAGA---GGAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc Alignment from Exonerate_protein2genome AATTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagAATTGGATAAATGGGAACAAAAGTTCAAAGAG---GAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc Alignment from Exonerate_coding2genome AATTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagAATTGGATAAATGGGAACAAAAGTTCAAAGAG---GAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc Alignment from GeneWise AATTGGATAAATGGAAAGAAAAATTCAAAGATCTGGAAACCAGAAGTAATCAGAGGTTAAACACAGGAACCATGGATGACCTAGACGTGCTTACCAGGAAGTTCAGCAAGCTTCAGGACGAGCTGCAG ataaccggagttactgccaattataactactgtttccatatcctgtctagAATTGGATAAATGGGAACAAAAGTTCAAAGAG---GAAACTAGAAGCAATCAGAGGTTGAACACAGGGATTATGGACGACCTAGATGTGCTTACTAGGAAGTTCAGCAAGCTTCAAGATGAGCTTCAGgtaccatcatccccctgtctcattgcctctctcctttccctcctccttcc #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTaggtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTaggtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag #### Klc2_ID857_9 --> 2 - 0 Original Alignment gaGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaagcccaaagatttgtgctgcaggccttttgtgttttatttttacaggaGAGAATAAGCCCATTTGGATGCATGCAGAGGAGCGTGAGGAGAGCAAGgtgagtagtcaagagcagcagtcaggtgcagagcagttttgaggctggga Alignment from CESAR gaGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaagcccaaagatttgtgctgcaggccttttgtgttttatttttacaggaGAGAATAAGCCCATTTGGATGCATGCAGAGGAGCGTGAGGAGAGCAAGgtgagtagtcaagagcagcagtcaggtgcagagcagttttgaggctggga Alignment from Spaln_aa2Genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaagcccaaagatttgtgctgcaggccttttgtgttttatttttacagGAGAGAATAAGCCCATTTGGATGCATGCAGAGGAGCGTGAGGAGAGCAAGgtgagtagtcaagagcagcagtcaggtgcagagcagttttgaggctggga Alignment from Spaln_nt2Genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaagcccaaagatttgtgctgcaggccttttgtgttttatttttacagGAGAGAATAAGCCCATTTGGATGCATGCAGAGGAGCGTGAGGAGAGCAAGgtgagtagtcaagagcagcagtcaggtgcagagcagttttgaggctggga Alignment from Pairagon GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaagcccaaagatttgtgctgcaggccttttgtgttttatttttacagGAGAGAATAAGCCCATTTGGATGCATGCAGAGGAGCGTGAGGAGAGCAAGgtgagtagtcaagagcagcagtcaggtgcagagcagttttgaggctggga Alignment from Exonerate_protein2genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaagcccaaagatttgtgctgcaggccttttgtgttttatttttacagGAGAGAATAAGCCCATTTGGATGCATGCAGAGGAGCGTGAGGAGAGCAAGgtgagtagtcaagagcagcagtcaggtgcagagcagttttgaggctggga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaagcccaaagatttgtgctgcaggccttttgtgttttatttttacagGAGAGAATAAGCCCATTTGGATGCATGCAGAGGAGCGTGAGGAGAGCAAGgtgagtagtcaagagcagcagtcaggtgcagagcagttttgaggctggga #### Klc2_ID862_4 --> 2 - 2 Original Alignment ccCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATcg ttacccttagagttctgaaaccgagggactatttccctgcctactgaaagccCCCAGCCCTGGAGGTGGAGATGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGGACCCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCGT---GAGGTGGCTGTACCTTTGTGCAAGAAGGCACTTGAAGACTTGGAGAAGACTTCAGGCCACGACCACCATGATGTAGCAACCATATTGAACATCCTAGCACTAGTTTATcggtaaccgacccctagctatatggcacagtggcagtctcattttaatgtct Alignment from CESAR ccCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATcg ttacccttagagttctgaaaccgagggactatttccctgcctactgaaagccCCCAGCCCTGGAGGTGGAGATGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGGACCCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCGT---GAGGTGGCTGTACCTTTGTGCAAGAAGGCACTTGAAGACTTGGAGAAGACTTCAGGCCACGACCACCATGATGTAGCAACCATATTGAACATCCTAGCACTAGTTTATcggtaaccgacccctagctatatggcacagtggcagtctcattttaatgtct Alignment from Spaln_aa2Genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG ttacccttagagttctgaaaccgagggactatttccctgcctactgaaagCCCCCAGCCCTGGAGGTGGAGATGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGGACCCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCGT---GAGGTGGCTGTACCTTTGTGCAAGAAGGCACTTGAAGACTTGGAGAAGACTTCAGGCCACGACCACCATGATGTAGCAACCATATTGAACATCCTAGCACTAGTTTATCGgtaaccgacccctagctatatggcacagtggcagtctcattttaatgtct Alignment from Spaln_nt2Genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG ttacccttagagttctgaaaccgagggactatttccctgcctactgaaagCCCCCAGCCCTGGAGGTGGAGATGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGGACCCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCG---TGAGGTGGCTGTACCTTTGTGCAAGAAGGCACTTGAAGACTTGGAGAAGACTTCAGGCCACGACCACCATGATGTAGCAACCATATTGAACATCCTAGCACTAGTTTATCGgtaaccgacccctagctatatggcacagtggcagtctcattttaatgtct Alignment from Pairagon CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG ttacccttagagttctgaaaccgagggactatttccctgcctactgaaagCCCCCAGCCCTGGAGGTGGAGATGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGGACCCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCG---TGAGGTGGCTGTACCTTTGTGCAAGAAGGCACTTGAAGACTTGGAGAAGACTTCAGGCCACGACCACCATGATGTAGCAACCATATTGAACATCCTAGCACTAGTTTATCGgtaaccgacccctagctatatggcacagtggcagtctcattttaatgtct Alignment from Exonerate_protein2genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG ttacccttagagttctgaaaccgagggactatttccctgcctactgaaagCCCCCAGCCCTGGAGGTGGAGATGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGGACCCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCGT---GAGGTGGCTGTACCTTTGTGCAAGAAGGCACTTGAAGACTTGGAGAAGACTTCAGGCCACGACCACCATGATGTAGCAACCATATTGAACATCCTAGCACTAGTTTATCGgtaaccgacccctagctatatggcacagtggcagtctcattttaatgtct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG ttacccttagagttctgaaaccgagggactatttccctgcctactgaaagCCCCCAGCCCTGGAGGTGGAGATGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGGACCCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCGT---GAGGTGGCTGTACCTTTGTGCAAGAAGGCACTTGAAGACTTGGAGAAGACTTCAGGCCACGACCACCATGATGTAGCAACCATATTGAACATCCTAGCACTAGTTTATCGgtaaccgacccctagctatatggcacagtggcagtctcattttaatgtct #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg tcactccccacgtgccatctgctgctcatctcccttcttgggctgtgtagAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGggtagataggggcaattagctatggcagttagctaggagtttggagagggt Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg tcactccccacgtgccatctgctgctcatctcccttcttgggctgtgtagAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGggtagataggggcaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG tcactccccacgtgccatctgctgctcatctcccttcttgggctgtgtagAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGGgtagataggggcaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG tcactccccacgtgccatctgctgctcatctcccttcttgggctgtgtagAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGGgtagataggggcaattagctatggcagttagctaggagtttggagagggt Alignment from Pairagon ---------------------------------------------------AGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG TCACTCCCCACGTGCCATCTGCTGCTCATCTCCCTTCTTGGGCTGTGTAGAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGGgtagataggggcaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG tcactccccacgtgccatctgctgctcatctcccttcttgggctgtgtagAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGGgtagataggggcaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_coding2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG tcactccccacgtgccatctgctgctcatctcccttcttgggctgtgtagAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGGgtagataggggcaattagctatggcagttagctaggagtttggagagggt Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG tcactccccacgtgccatctgctgctcatctcccttcttgggctgtgtagAAGGAGAAGGGTGATGTCCCCAAAGACTCCCTCGATGACCTGTTTCCCAACGAAGATGAACAGAGGTCGGgtagataggggcaattagctatggcagttagctaggagtttggagagggt #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA tggggagaccacttcttggtcaaatgacctcatgtcattctgtcttacagGCTCAGGACCCCCAGATGCTAGATCAACTATCCAAAAACATTACTCGATGTGGGTTGTCAAATACTGCTCTCAACTACTTTCGGgtaaaggccagatgaccatgccagtaattagattcttatttccagtagag #### Lgals12_ID2191_2 --> 0 - 2 Original Alignment GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGag gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGaggtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg Alignment from CESAR GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGag gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGaggtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg Alignment from Spaln_aa2Genome GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGAG gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGAGgtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg Alignment from Spaln_nt2Genome GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGAG gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGAGgtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg Alignment from Pairagon GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGAG gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGAGgtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg Alignment from Exonerate_protein2genome GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGAG gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGAGgtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg Alignment from Exonerate_coding2genome GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGAG gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGAGgtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg Alignment from GeneWise GTGATTCCTTATGGCACAACAATTTTTGGTGGCCTGTATGCAGGCAAGATGGTCACGCTGCAGGGTGTGGTCCCTCTGCATGCAAGGAG gtctttagcaccccatccactttgtgtagcagcatgtgctcaccttctagGTGATTCCTTATGGCACAACAATTTTTGGTGGTCTGTATGCAGGCAAGATGGTCACACTGCAGGGTGTGGTTCCTTTACATGCAAGGAGgtaagcccactcagtagggcccaaatttatggttatcaaatgggagttcg #### Lgi1_ID7579_4 --> 1 - 2 Original Alignment aTTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACtt ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagaTTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACttgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc Alignment from CESAR aTTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACtt ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagaTTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACttgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc Alignment from Spaln_aa2Genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagATTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc Alignment from Spaln_nt2Genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagATTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc Alignment from Pairagon ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagATTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc Alignment from Exonerate_protein2genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagATTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc Alignment from Exonerate_coding2genome ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagATTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc Alignment from GeneWise ATTCATAGAAAACAACAATATCAAGTCCATTTCAAGACATACTTTCCGGGGACTCAAGTCTTTGATTCACTT ttctccttagtgctgctatttgcctgactcctcatgctcggcccctccagATTCATAGAAAACAACAATATCAAGTCTATTTCAAGACACACTTTCCGGGGAGTCAAGTCTTTGATCCACTTgtgagagtctgttttgttttgttaagctccctgtctggttgaatttggtc #### Lgi1_ID7580_5 --> 1 - 2 Original Alignment gAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATgt tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctaggAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATgtgtactgagaaaaccagactattaattacaattacagataactaatgagat Alignment from CESAR gAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATgt tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctaggAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATgtgtactgagaaaaccagactattaattacaattacagataactaatgagat Alignment from Spaln_aa2Genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctagGAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGTgtactgagaaaaccagactattaattacaattacagataactaatgagat Alignment from Spaln_nt2Genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctagGAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGTgtactgagaaaaccagactattaattacaattacagataactaatgagat Alignment from Pairagon GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctagGAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGTgtactgagaaaaccagactattaattacaattacagataactaatgagat Alignment from Exonerate_protein2genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctagGAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGTgtactgagaaaaccagactattaattacaattacagataactaatgagat Alignment from Exonerate_coding2genome GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctagGAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGTgtactgagaaaaccagactattaattacaattacagataactaatgagat Alignment from GeneWise GAGTCTTGCAAACAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGT tcagtgcaccttcattctctcgccttcctgcctcttttttaattttctagGAGTCTTGCTAATAACAATCTCCAGACACTCCCAAAAGACATTTTCAAAGGCCTGGATTCCTTAACAAATGTgtactgagaaaaccagactattaattacaattacagataactaatgagat #### Lipf_ID6847_3 --> 2 - 2 Original Alignment gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtacagaggatcaatttacaacaatagttactacttttctgataggcAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTaggtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat Alignment from CESAR gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtacagaggatcaatttacaacaatagttactacttttctgataggcAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTaggtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat Alignment from Spaln_aa2Genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtacagaggatcaatttacaacaatagttactacttttctgatagGCAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTAGgtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat Alignment from Spaln_nt2Genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtacagaggatcaatttacaacaatagttactacttttctgatagGCAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTAGgtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat Alignment from Pairagon GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtacagaggatcaatttacaacaatagttactacttttctgatagGCAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTAGgtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat Alignment from Exonerate_protein2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtacagaggatcaatttacaacaatagttactacttttctgatagGCAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTAGgtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat Alignment from Exonerate_coding2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtacagaggatcaatttacaacaatagttactacttttctgatagGCAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTAGgtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat Alignment from GeneWise GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtacagaggatcaatttacaacaatagttactacttttctgatagGCAAGAGATCTGTGGCATATCTGCAGCATGGTTTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCATTCATTCTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGTCGACGCAATACATGGTCCAGGAAAAATGTATACTATTCACCAGATCCAGTTGAATTCTGGGCCTTTAGgtaggtaaggggcatattgcaaaatgaacacactcttgtaagtcaaccat #### Lipf_ID6851_7 --> 0 - 0 Original Alignment AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagAGTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga Alignment from CESAR AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagAGTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga Alignment from Spaln_aa2Genome TCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagagTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga Alignment from Spaln_nt2Genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagAGTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga Alignment from Pairagon AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagAGTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga Alignment from Exonerate_protein2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagAGTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga Alignment from Exonerate_coding2genome AGTCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagAGTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga Alignment from GeneWise TCGCTTTGATGTGTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAG atttcaaagtatcactaatctgtatgaagactttgtttttctcatcctagagTTGCTTTGATGTGTATTTGGGTCATAATCCAGCAGGAACATCCACTCAAGACCTTTTCCACTGGGCACAGgtaagtctgtctcaagtctcaaagctctcagcattgattctgagaagtga #### Lipf_ID6852_8 --> 0 - 0 Original Alignment CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa Alignment from CESAR CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa Alignment from Spaln_aa2Genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa Alignment from Spaln_nt2Genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa Alignment from Pairagon CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa Alignment from Exonerate_protein2genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa Alignment from Exonerate_coding2genome CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa Alignment from GeneWise CTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAG ctaagtgtaattttaattagttcactcacactgggcaatactctctgcagCTTGCTAAATCTGGGAAGCTCCAAGCCTATAATTGGGGAAGTCCATTACAGAACATGTTACACTACAATCAGgtgatgggcctgagattaaaatagcttgcaagagaaaatagctagcttaa #### Lipk_ID6861_5 --> 2 - 0 Original Alignment cgTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagcaTTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca Alignment from CESAR cgTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagcaTTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca Alignment from Spaln_aa2Genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagCATTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca Alignment from Spaln_nt2Genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagCATTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca Alignment from Pairagon CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagCATTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca Alignment from Exonerate_protein2genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagCATTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca Alignment from Exonerate_coding2genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagCATTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca Alignment from GeneWise CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaaagataattagaagagtatgtggataaatggaaacttctttatttagCATTCATAGCATTCTCCACAAATCTAGAGCTGGCTAAAAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTAAAATATACTCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAGgtatgtaaatcactataaaggatgaggaactgtaaatcaccatccttcca #### Lipk_ID6863_7 --> 0 - 0 Original Alignment AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg Alignment from CESAR AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg Alignment from Spaln_aa2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg Alignment from Spaln_nt2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg Alignment from Pairagon AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg Alignment from Exonerate_protein2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg Alignment from Exonerate_coding2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg Alignment from GeneWise AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG gtgtcgcatctagtggagtggtctcgagctcctgttttccttgttaccagAGCTGCTTGGATGTTTATCTGTCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTGCACTGGGCCCAGgtaagctcttctatgcattgaatcctctctccctctcttcatccctcctg #### Lipn_ID6872_4 --> 1 - 1 Original Alignment cTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAg acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagcTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAggtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg Alignment from CESAR cTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAg acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagcTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAggtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg Alignment from Spaln_aa2Genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAGgtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg Alignment from Spaln_nt2Genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAGgtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg Alignment from Pairagon CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAGgtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg Alignment from Exonerate_protein2genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAGgtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg Alignment from Exonerate_coding2genome CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAGgtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg Alignment from GeneWise CTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAG acaaatgttagatataattatagcaatgaaacctgctttatgttcttcagCTTCAATGAAATGGCAAAATATGACCTCCCAGGAATAATAGATTTCATTGTGAATAATACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTTGGCACTACAATAGgtaatgttagatgagttaatgtcattaaggaccagagttaatgtctttgg #### Lipo1_ID6827_6 --> 0 - 0 Original Alignment CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct Alignment from CESAR CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct Alignment from Spaln_aa2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct Alignment from Spaln_nt2Genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct Alignment from Pairagon CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct Alignment from Exonerate_protein2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct Alignment from Exonerate_coding2genome CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct Alignment from GeneWise CTCCTCTTTGGTGAAAAAGAATTTTTTCCTACCGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAG agcattacactttctcacactagactgcctgtttttctgctcttgtgtagCTTCTCTTTGGTGAAAAAGAATTTTTTCCGGCCATAGTTTTCAGTGAGGTGGGTGCATGTGTTTGTAATATTAACTTCTTTACAGCCATATGTGCAGCTATCATGGAATCAATGGGTGGTTATTCACCAGACCAGTTAAATAAGgtgaggctgttcttcattagtgcatgtgtgtttgtgagtgtccaggtgct #### Loxl4_ID8560_13 --> 0 - 1 Original Alignment GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAg gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAggtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt Alignment from CESAR GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAg gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAggtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt Alignment from Spaln_aa2Genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAGgtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt Alignment from Spaln_nt2Genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAGgtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt Alignment from Pairagon GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAGgtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt Alignment from Exonerate_protein2genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAGgtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt Alignment from Exonerate_coding2genome GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAGgtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt Alignment from GeneWise GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG gatatggagtccttcagaaactccctaccagttcatttctttatttccagGTGGTTGTGAACCCCACAAATGATGTTGCAGTGTCAGATTTCTCAAATAACATGGTACGGTGCCGCTGCAAGTATGATGGCCAGCGAGTCTGGTTACACAACTGCTACACAGgtgagagcagcaatacatagaaaaacattaactagtacctattgatatgt #### Loxl4_ID8568_7 --> 2 - 0 Original Alignment ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagggCTAGGG---ATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt Alignment from CESAR ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAG------CGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagggCTAGGG---ATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt Alignment from Spaln_aa2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagGGCTAGGG---ATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt Alignment from Spaln_nt2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCG-GA-----CCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagGGCTAGG---GATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt Alignment from Pairagon GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTA------TGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagGGCTAGG---GATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt Alignment from Exonerate_protein2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagGGCTAGGG---ATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt Alignment from Exonerate_coding2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTAT------GAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagGGCTAGGG---ATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt Alignment from GeneWise GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGG------ACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctggggagtgcacaagaggcttatatgtgctttattaaatgacagGGCTAGGG---ATCCATCTGAGTGAAGTGCAATGCAGGGGGTATGAGCGTGAGCGTGCCTTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCGGAACAAGgtgagtctagctcttcttcggactgatgatgagcattttttcatgtgttt #### Loxl4_ID8574_2 --> 2 - 0 Original Alignment gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagggCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCA---CGACCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag Alignment from CESAR gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagggCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCA---CGACCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag Alignment from Spaln_aa2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagGGCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCA---CGACCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag Alignment from Spaln_nt2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagGGCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCAC---GACCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag Alignment from Pairagon GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagGGCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCAC---GACCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag Alignment from Exonerate_protein2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagGGCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCA---CGACCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag Alignment from Exonerate_coding2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagGGCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCA---CGACCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag Alignment from GeneWise GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaaaacatggtctgtttgggaattgtccttcttctctccctagGGCCCATCTGGCTGGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGCGCCAGCATGGATATCACTCTGAGAAGGTGTCCAATGCACGA---CCTCAGgtgagacagttgtctagttactgtcctgagccaaaagctggacagaccag #### Lpxn_ID3469_2 --> 2 - 0 Original Alignment atGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG aggcactagtgtaagtgggctacatttgttttctgtctttttccttctagatGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGgtgagtattgaaccgagctcatctaatgtagctttaccaattgtaatgtt Alignment from CESAR atGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG aggcactagtgtaagtgggctacatttgttttctgtctttttccttctagatGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGgtgagtattgaaccgagctcatctaatgtagctttaccaattgtaatgtt Alignment from Spaln_aa2Genome ATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG aggcactagtgtaagtgggctacatttgttttctgtctttttccttctagATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGgtgagtattgaaccgagctcatctaatgtagctttaccaattgtaatgtt Alignment from Spaln_nt2Genome ATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG aggcactagtgtaagtgggctacatttgttttctgtctttttccttctagATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGgtgagtattgaaccgagctcatctaatgtagctttaccaattgtaatgtt Alignment from Pairagon ATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG aggcactagtgtaagtgggctacatttgttttctgtctttttccttctagATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGgtgagtattgaaccgagctcatctaatgtagctttaccaattgtaatgtt Alignment from Exonerate_protein2genome CTGGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAG aggcactagtgtaagtgggctacatttgttttctgtctttttccttCTAGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGgtgagtattgaaccgagctcatctaatgtagctttaccaattgtaatgtt Alignment from Exonerate_coding2genome CTGGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAGGTGCAGCTC---GTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG aggcactagtgtaagtgggctacatttgttttctgtctttttccttCTAGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGGTGAGTATTGAACCGAGCTCATCTAATGTAGCTTTACCAATTGTAATGTT Alignment from GeneWise GAAGAGCTGGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCAGTTTCTTGTCACCTGGATCAGCAATCCACAGAGGAGAGCAAGATTCCCCAAACTCCAAAGACCTTGTCATCGCAGGGTAACACAAGTCCCTTGAAGGTGCAGCTC---GTGTATGCAACCAATATCCAGGAGCCCAATGTCTACAG tagtgtaagtgggctacatttgttttctgtctttttcctt------CTAGATGCCTTATTGGAGGAATTGGAACGCTGCACCTTTCAGGACAGTGAGGAATATTCAAATCCGGTTTCTTGTCACCTGGATCAGCAATTGACAGAGGAGAGCAAGATTCCCCAAACTCCAAAAACCTTGTCATCGCAGGGGAACACAAGTCCCTTGAAGGTGAGTATTGAACCGAGCTCATCTAATGTAGCTTTACCAATTGTAATGTT #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcatt Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcact #### Lpxn_ID3477_8 --> 2 - 0 Original Alignment gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaataggcTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac Alignment from CESAR gcTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaataggcTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac Alignment from Spaln_aa2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaatagGCTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac Alignment from Spaln_nt2Genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaatagGCTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTTT---ACCCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac Alignment from Pairagon GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaatagGCTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTTT---ACCCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac Alignment from Exonerate_protein2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaatagGCTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac Alignment from Exonerate_coding2genome GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaatagGCTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTT---TACCCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac Alignment from GeneWise GCTTTCATGAGAAGGACAAGAAGCCATACTGCCGAAAGGATTTCTTAGCCATGTTCTCACCCAAATGTGGTGGCTGCAACCGCCCAGTGCTGGAAAACTACCTTTCAGCCATGAACACTGTCTGGCACCCAGAGTGCTTTGTGTGTGGG taatgtagtattaaacagcccagaataaacaagtcacttttcttcaatagGCTTCCATGACAAGGACAAGAAACCATATTGCCTAGAGGATTTCTTGGCTATGCTCTCACCTAAATGTAGTGGCTGTAACCGTCCAGTGCTGGAAAACTATCTGTCGGCCATGAACACTGTTTAC---CCAGAGTGCTTTGTGTGTGGCgtactgatgttcagtaacttccagctaaatgtagggatgaaaggatttac #### Lrp5_ID102_22 --> 0 - 2 Original Alignment ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACag agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATaggtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc Alignment from CESAR ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACag agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATaggtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc Alignment from Spaln_aa2Genome ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATAGgtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc Alignment from Spaln_nt2Genome ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATAGgtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc Alignment from Pairagon ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATAGgtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc Alignment from Exonerate_protein2genome ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATAGgtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc Alignment from Exonerate_coding2genome ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATAGgtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc Alignment from GeneWise ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttcagcttgcatgacccttgactttccttctgatgcagATCCTAAACCCACCGCCATCCCCAGCCACAGACCCATCTCTTTATAATGTGGATGTGTTTTATTCTTCAGGCATCCCAGCCACTGCTAGACCATATAGgtaagtccatgttcttgtcctgactactgttgggaaggggcctcatctcc #### Lrp5_ID103_21 --> 2 - 0 Original Alignment gcATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccaggcATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat Alignment from CESAR gcATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccaggcATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat Alignment from Spaln_aa2Genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccagGCATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat Alignment from Spaln_nt2Genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccagGCATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat Alignment from Pairagon GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccagGCATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat Alignment from Exonerate_protein2genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccagGCATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat Alignment from Exonerate_coding2genome GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccagGCATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat Alignment from GeneWise GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG agagtggactgccttggttttatgtgtaacctggtctttggcccgtccagGCATTCCTTTCAGCAAGTCTGTGATGAGCTCCATGAGCCTGGTGGGGGGGCATGGCAGTGTGCCACTCTATGATCAGAATCACATCACTGGTGCTTTGTCCAGCAGCTCGTCCAGCACAAAGGCAACATTATATCCCCCAgtaggtaagtaggttggcaattggatgggactcgaagctcagtgctcgat #### Lrp5_ID106_18 --> 2 - 1 Original Alignment agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagagCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATggtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat Alignment from CESAR agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagagCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATggtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat Alignment from Spaln_aa2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat Alignment from Spaln_nt2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCC------TGCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat Alignment from Pairagon AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCC------TGCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat Alignment from Exonerate_protein2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat Alignment from Exonerate_coding2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat Alignment from GeneWise AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgtgcatgtctcacacaccatcttgcttacatgctcctattttgcagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGATGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTGGACTTGCGGCTACACTGTGATGGTGAGGCTGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtaaatccctaccctgatcatcaccatcctcgaggtcccattgtagccat #### Lrp5_ID110_14 --> 0 - 2 Original Alignment CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAgggtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc Alignment from CESAR CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAgggtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc Alignment from Spaln_aa2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc Alignment from Spaln_nt2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc Alignment from Pairagon CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc Alignment from Exonerate_protein2genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc Alignment from Exonerate_coding2genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc Alignment from GeneWise CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG acttttgggcaatggctcagtggtgctacctttccttttattattaacagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATTAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTAAGAGGGGACCGTGACAAACCAAGGGCCATCGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagggatgtgtgaaacatgtacctatattgctggc #### Lrp5_ID118_6 --> 2 - 2 Original Alignment ggGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGgg gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagggGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGgggtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc Alignment from CESAR ggGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGgg gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagggGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGgggtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc Alignment from Spaln_aa2Genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagGGGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc Alignment from Spaln_nt2Genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagGGGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc Alignment from Pairagon GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagGGGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc Alignment from Exonerate_protein2genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagGGGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc Alignment from Exonerate_coding2genome GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagGGGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc Alignment from GeneWise GGGCTGAGGAAGTGCTGCTGCTGGCTCGGAGGACAGACCTGAGGAGGATCTCTCTGGACACCCCTGACTTCACAGACATAGTGCTGCAGGTGGGCGACATCCGGCATGCCATTGCCATTGACTACGATCCCCTGGAGGGCTACGTGTACTGGACCGACGATGAGGTGCGGGCTATCCGCAGGGCGTACCTAGATGGCTCAGGTGCGCAGACACTTGTGAACACTGAGATCAATGACCCCGATGGCATTGCTGTGGACTGGGTCGCCCGGAACCTCTACTGGACAGATACAGGCACTGACAGAATTGAGGTGACTCGCCTCAACGGCACCTCCCGAAAGATCCTGGTATCTGAGGACCTGGACGAACCGCGAGCCATTGTGTTGCACCCTGTGATGGG gcttcacccacagaagtatgctcctgaccacgtgctacatcttttattagGGGCAGAGCAAGTGCTGCTGCTAGCTCGAAGGACAGACCTGAGGAGGATATCTCTGGATACTCCTGATTTCACAGACATAGTGCTGCAGGTGGGTGACATCCGGCATGCCATTGCCATTGACTATGAACCCCTGGAGGGCTATGTGTACTGGACCGATGATGAGGTGCGGGCTATCCGTAGGGCATACCTAGATGGCTCAGGTGCACAGACTCTGGTGAACACTGAGATCAATGATCCTGATGGCATTGTGGTGGACTGGGTTGCCCGGAACCTCTATTGGACAGATACAGGCACAGACAGAATTGAGGTTACTCGCCTTAATGGAACCTCCCGAAAGATCCTGGTATCTGAGGACCTTGATGAACCACGAGCCATTGTGTTGCACCCTGTGATGGGgtaggtactaaaacagtcggtaggcactgggattagtctcactgcctctc #### Lrp5_ID123_3 --> 1 - 2 Original Alignment gTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCcg acttattatgcttccctctgaatatttcactttggccttttcttttgcaggTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCcggtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg Alignment from CESAR gTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCcg acttattatgcttccctctgaatatttcactttggccttttcttttgcaggTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCcggtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg Alignment from Spaln_aa2Genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG acttattatgcttccctctgaatatttcactttggccttttcttttgcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCCGgtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg Alignment from Spaln_nt2Genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG acttattatgcttccctctgaatatttcactttggccttttcttttgcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCCGgtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg Alignment from Pairagon GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG acttattatgcttccctctgaatatttcactttggccttttcttttgcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCCGgtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg Alignment from Exonerate_protein2genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG acttattatgcttccctctgaatatttcactttggccttttcttttgcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCCGgtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg Alignment from Exonerate_coding2genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG acttattatgcttccctctgaatatttcactttggccttttcttttgcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCCGgtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg Alignment from GeneWise GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG acttattatgcttccctctgaatatttcactttggccttttcttttgcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCAAACGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGTTGACCATCGACCTTGAGGAACAGAAACTGTATTGGGCTGATGCCAAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTCCGgtgagtgtctagtggatggggtgccctccccacttgactgtcctaacacg #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagatATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAggtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagatATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAggtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagttatggcctcaactgctttcacttaccccttttccagATATAAATGAATGTGTGATGCCCGGGATGTGTCGTCATGGTGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCAAACAGTGTATAGgtatggttggggacaattctggatcagccaaaggggaggagcgtagtcaa #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aatataacttacccagtccacccacatctttccttctgttttatctgtagatGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGggtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aatataacttacccagtccacccacatctttccttctgttttatctgtagatGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGggtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aatataacttacccagtccacccacatctttccttctgttttatctgtagATGTGAATGAGTGTGGGGCTGAGCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCATTGCAACCGAGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtacaaacacatggctagcccacacctgggtgtgggctgttcctgttctt #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg acaccagatttgagtattacaccacccttttcttttgaattgttttctagacATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg acaccagatttgagtattacaccacccttttcttttgaattgttttctagacATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt #### Ltbp3_ID1267_19 --> 2 - 1 Original Alignment atATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGg tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagatATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGggtaagcaccctcactgccctgcagactggcaattgttggagctactgcta Alignment from CESAR atATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGg tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagatATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGggtaagcaccctcactgccctgcagactggcaattgttggagctactgcta Alignment from Spaln_aa2Genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGGgtaagcaccctcactgccctgcagactggcaattgttggagctactgcta Alignment from Spaln_nt2Genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGGgtaagcaccctcactgccctgcagactggcaattgttggagctactgcta Alignment from Pairagon ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGGgtaagcaccctcactgccctgcagactggcaattgttggagctactgcta Alignment from Exonerate_protein2genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGGgtaagcaccctcactgccctgcagactggcaattgttggagctactgcta Alignment from Exonerate_coding2genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGGgtaagcaccctcactgccctgcagactggcaattgttggagctactgcta Alignment from GeneWise ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG tctgtctgtgtctgaaggcctgtcacacttgtgctgtgatttcttcacagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCCTGCCCCATGGGGCTTGTGAGAACCTTCAGGGCTCTTATGTTTTGGTCTGGGATGAGGGTTTCACACTCACCCAAGACCAGCATGGTTGTGAGGgtaagcaccctcactgccctgcagactggcaattgttggagctactgcta #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtaagaaatcattgatggatgaatgtgcccaattccccacctagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTggtaagaaatcattgatggatgattaactttctcctgtcttgtagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgaatgtgcccaattccccacctagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgaatgtgcccaattccccacctagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgaatgtgcccaattccccacctagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgaatgtgcccaattccccacctagGGTCCC Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC cgagcagcatattgctctggtctctttaacaacaacttcatctcttatagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTTGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCCCCACGTGGTACTGgtaagaaatcattgatggatgaatgtgcccaattccccacctagGGTCCC #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAggtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAggtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctgtaatttagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Exonerate_protein2genome CTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagattgtgtttctctctGTAATTTAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --------------TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG cccaatgtatagaaatcctactatagATTGTGTTTCTCTCTGTAATTTAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACTGTGTGCCACGCCCAGGTGGGGCAGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTCGTGTAGgtacctatgacattggggactgagggacagagtgcactggtcacagactt #### Lzts2_ID9277_3 --> 0 - 0 Original Alignment GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAG------CGGCCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAGAAA---CAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac Alignment from CESAR GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAGCGG------CCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAGAAA---CAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac Alignment from Spaln_aa2Genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAGCGG------CCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAG---AAACAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac Alignment from Spaln_nt2Genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAGC------GGCCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAGAA---ACAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac Alignment from Pairagon GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAGC------GGCCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAGAAA---CAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac Alignment from Exonerate_protein2genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAGCGG------CCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAGAAA---CAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac Alignment from Exonerate_coding2genome GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAGCGG------CCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAGAAA---CAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac Alignment from GeneWise GCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACTGTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTTCCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTGGAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGGAG ggtaacagcagactggaatgggctattcggctcttgtttcttttttatagGCATTTGGGGCACAGCAGCGG------CCAAGAGAACGAGGCGAGGACTGTGCATCCCAGGCTCATCAGGCGACACAGCGTGTCCAACGGGCTCAGCAGTTGCTGCAGCTACAGGTGTTCCAGCTACAACAAGAGAAA---CAGTTGCAAGAGGACTATGCCCAGCTGCTTCAGGAACGGGAACAGCTGGAGCGCCGCTGTGCCACCTTTGAACGAGAGCAACGAGAACTTGGGCCACGGCTGGAAGAAACTAAATGGGAGgtaagtatcaggcaaaatggccagggtcacaccctggagagttggcccac #### Macrod1_ID2006_2 --> 2 - 1 Original Alignment ccTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAg ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagccTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAggtaagtttaactattctctaaacacaagggagcttctccctcaacatatt Alignment from CESAR ccTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAg ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagccTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAggtaagtttaactattctctaaacacaagggagcttctccctcaacatatt Alignment from Spaln_aa2Genome CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagCCTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAGgtaagtttaactattctctaaacacaagggagcttctccctcaacatatt Alignment from Spaln_nt2Genome CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagCCTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAGgtaagtttaactattctctaaacacaagggagcttctccctcaacatatt Alignment from Pairagon CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagCCTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAGgtaagtttaactattctctaaacacaagggagcttctccctcaacatatt Alignment from Exonerate_protein2genome CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagCCTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAGgtaagtttaactattctctaaacacaagggagcttctccctcaacatatt Alignment from Exonerate_coding2genome CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagCCTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAGgtaagtttaactattctctaaacacaagggagcttctccctcaacatatt Alignment from GeneWise CCTTTCTGAAGGGCCTGAGTGACAAGCAGAGAGAGGAACATTACTTCTGCAAGGATTTCATTAAGCTGAAGAAGATCCCCACGTGGAAGGAGACAGCAAAAG ccatggaaagggaaagagatgactgctaattgtcttttctttccgaccagCCTTTCTGAAAGGCCTGAGTGATAAGCAGAGGGAGGAACATTACTCCTGCAAGGACTTCATAAAACTGAAGAAGATCCCCACATGGAAGGAGACAGCCAAAGgtaagtttaactattctctaaacacaagggagcttctccctcaacatatt #### Macrod1_ID2045_4 --> 2 - 1 Original Alignment ccAACAGCTCCCTGCTTGGAGGCGGAGGGg tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagccAACAGCACCCTACTTGGAAGTGGAGGGggtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg Alignment from CESAR ccAACAGCTCCCTGCTTGGAGGCGGAGGGg tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagccAACAGCACCCTACTTGGAAGTGGAGGGggtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg Alignment from Spaln_aa2Genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagCCAACAGCACCCTACTTGGAAGTGGAGGGGgtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg Alignment from Spaln_nt2Genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagCCAACAGCACCCTACTTGGAAGTGGAGGGGgtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg Alignment from Pairagon CCAACAGCTCCCTGCTTGGAGGCGGAGGGG tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagCCAACAGCACCCTACTTGGAAGTGGAGGGGgtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg Alignment from Exonerate_protein2genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagCCAACAGCACCCTACTTGGAAGTGGAGGGGgtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg Alignment from Exonerate_coding2genome tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagccaacagcaccctacttggaagtggagggggtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg Alignment from GeneWise tcccatactactcttgcctgttttcatcaatttacctttcttctaaacagccaacagcaccctacttggaagtggagggggtgggtaccagacaatcctgagtcagctggaaggcccaagtgggggtagg #### Macrod1_ID2050_5 --> 2 - 1 Original Alignment tgGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGt gtcctctggggttggttgtcagatatgcttaactgaaatttctgtttcagtgGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGtgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg Alignment from CESAR tgGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGt gtcctctggggttggttgtcagatatgcttaactgaaatttctgtttcagtgGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGtgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg Alignment from Spaln_aa2Genome TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctggggttggttgtcagatatgcttaactgaaatttctgtttcagTGGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg Alignment from Spaln_nt2Genome TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctggggttggttgtcagatatgcttaactgaaatttctgtttcagTGGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg Alignment from Pairagon TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctggggttggttgtcagatatgcttaactgaaatttctgtttcagTGGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg Alignment from Exonerate_protein2genome TGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctggggttggttgtcagatatgcttaactgaaatttctgtttcagTGGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg Alignment from Exonerate_coding2genome AGGCGGAGGGGTGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctggggttggttgtcagatatgcttaactgaaatTTCTGTTTCAGTGGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg Alignment from GeneWise ------------CTTGGAGGCGGAGGGGTGGACGGCTGCATTCATCGGGCCGCGGGATCCCTGCTCACGGACGAATGCCGCACCCTACAGAACTGCGAGACCGGCAAAGCCAAGATCACTTGCGGCTATCGGCTGCCAGCCAAGT gtcctctggggttggttgtcagATATGCTTAACTGAAATTTCTGTTTCAGTGGATGGCTGTATACATCGGGCCGCAGGATCCCTGCTCATGGATGAGTGCCGCACCCTACAGAACTGCGAGACTGGCAAGGCCAAGATAACCTGTGGGTATCGACTGCCAGCCAAGTgtgagaggtaactgctcacctggcatgagggggtgccctgacatcaaatg #### Macrod1_ID2052_7 --> 0 - 1 Original Alignment GCTTTCCCGTGCATCTCCACAGGCGTGTTTg gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacagGCCTTTCCATGCATCTCCACAGGTGTGATTagtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc Alignment from CESAR GCTTTCCCGTGCATCTCCACAGGCGTGTTTg gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacagGCCTTTCCATGCATCTCCACAGGTGTGATTagtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc Alignment from Spaln_aa2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacagGCCTTTCCATGCATCTCCACAGGTGTGATTAgtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc Alignment from Spaln_nt2Genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacagGCCTTTCCATGCATCTCCACAGGTGTGATTAgtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc Alignment from Pairagon GCTTTCCCGTGCATCTCCACAGGCGTGTTTG gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacagGCCTTTCCATGCATCTCCACAGGTGTGATTAgtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc Alignment from Exonerate_protein2genome GCTTTCCCGTGCATCTCCACAGGCGTGTTTG gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacagGCCTTTCCATGCATCTCCACAGGTGTGATTAgtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc Alignment from Exonerate_coding2genome gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacaggcctttccatgcatctccacaggtgtgattagtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc Alignment from GeneWise gacaaaaaccacatgattatctgtatgtcaggctccattgatgtccacaggcctttccatgcatctccacaggtgtgattagtgaggtcggaagaacctgaaatatgaagttgtggacaatggcttctacc #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttaggcTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttaggcTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagcttcttttttctttctatttagGCTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from Exonerate_coding2genome TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagCTTCTTTTTTCTTTCTATTTAGGCTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa Alignment from GeneWise TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgaattcacagCTTCTTTTTTCTTTCTATTTAGGCTACCCTAATGAGGAGGCTGCAGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtctgcccagacagacattacattatgggagcttgggtgccataaactaa #### Mamdc2_ID5144_9 --> 2 - 0 Original Alignment ggCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAAAAC---CATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcaggcCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg Alignment from CESAR ggCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcaggcCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg Alignment from Spaln_aa2Genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcagGCCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg Alignment from Spaln_nt2Genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTT---GAAGAAAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcagGCCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg Alignment from Pairagon GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAG---AAAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcagGCCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg Alignment from Exonerate_protein2genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcagGCCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg Alignment from Exonerate_coding2genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcagGCCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg Alignment from GeneWise --CACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcactaaactccctttgatttttgcagGCCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTACATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGTGATACCCTAGCCGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATCTGGTCCGTTCTTGAGTCCCCAAGGGGTGTGTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgggctagagaccaatggaggagcactcattggtgttaaccactggatg #### Mamdc2_ID5151_4 --> 0 - 1 Original Alignment ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTg cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTggtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg Alignment from CESAR ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTg cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTggtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg Alignment from Spaln_aa2Genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg Alignment from Spaln_nt2Genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg Alignment from Pairagon ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg Alignment from Exonerate_protein2genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg Alignment from Exonerate_coding2genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg Alignment from GeneWise ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggcagggagcacagtgtcttgatttatgttcctttgctgttggcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtgagtattagtagtgatttagatgcaaaatcaaagaatcaaatcacatg #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt Alignment from CESAR GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt Alignment from Pairagon GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt Alignment from Exonerate_protein2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt Alignment from Exonerate_coding2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt Alignment from GeneWise GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG ttcctgatgtctccatatggcttgaactgttctctctcttattttcacagGGCCTCCACCACCTGCATTCTAAGGGAAAAATTCACCGAGACATTAAGgtaagcgttcaagcaagtacatggtacaagtgaagaggaagcctagaggt #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGggtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGggtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Pairagon GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from Exonerate_coding2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt Alignment from GeneWise GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG aagcctagaggtgcacccagcataaattttgtatctgtttgctgttccagGGTGCTAACCTTCTGCTCACTCTGCAGGGTGATGTGAAGTTGGgtgagcagctgggggactttctgggaccacacaactgcatgctggggctt #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcaggATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGaggtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacttt Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcaggATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGaggtaggtttaatacttgcctcttgcctgtccccctgatgatccttgactgt Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacttt Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacttt Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacttt Alignment from Exonerate_protein2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacttt Alignment from Exonerate_coding2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacttt Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacttt #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg cttgcctgtccccctgatgatccttgactgtcttttttttaatattacaggGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg cttgcctgtccccctgatgatccttgactgtcttttttttaatattacaggGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Exonerate_protein2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Exonerate_coding2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg #### Map4k2_ID1637_16 --> 1 - 2 Original Alignment gAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAag caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtaggAGCCTGTTGCAGTCAGTGCAGGAAGCTCTGGAGGACaggtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from CESAR gAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAag caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtaggAGCCTGTTGCAGTCAGTGCAGGAAGCTCTGGAGGACaggtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Spaln_aa2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCAGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Spaln_nt2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCAGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Pairagon GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCAGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Exonerate_protein2genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCAGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Exonerate_coding2genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCAGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from GeneWise GAGGAAAGGAGC- CAGGCAGAACCCTgtcgaagattgggtctctgatctttgtctttttgtaggagcctgttgcagtcagtgcaggaagctctggaggacaggtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg GAAGgtaggagttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAggtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt Alignment from CESAR GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg GAAGgtgagggttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAggtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt Alignment from Spaln_aa2Genome GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAAGgtaggagttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt Alignment from Spaln_nt2Genome GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAAGgtaggagttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt Alignment from Pairagon GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAAGgtaggagttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt Alignment from Exonerate_protein2genome GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAAGgtaggagttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt Alignment from Exonerate_coding2genome GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAAGgtaggagttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt Alignment from GeneWise GAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAAGgtaggagttgttggccctccctccttttgtcttgttttcttcttagCTCATCTCTCAGCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagggctggcagttgtagaggcagccggaataacatgctcccaatttt #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagtgCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from CESAR ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagtgCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Pairagon TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtccctcccagctgtgtctctcggctctagTGCGAAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtatgtgactggaggaccattaaggaggaggggagccaacagactgagaa #### Map4k2_ID1650_29 --> 2 - 1 Original Alignment gcTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGg gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacaggcTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGggtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca Alignment from CESAR gcTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGg gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacaggcTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGggtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca Alignment from Spaln_aa2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGGgtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca Alignment from Spaln_nt2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGGgtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca Alignment from Pairagon GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGGgtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca Alignment from Exonerate_protein2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGGgtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca Alignment from Exonerate_coding2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGGgtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca Alignment from GeneWise GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG gtttttaaagcaagccaggtgcaaatagtatttctttcctcttgaaacagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTGAACTAACCTTTGACTTCACTATTGAGACTGTGGgtaaggtcggcagtggtggatacaataatatatagtctagaagtttgtca #### Mgea5_ID9583_15 --> 0 - 1 Original Alignment AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATg caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATggtaagtatgagttgggtgactatacaacttggctagacatttaatattat Alignment from CESAR AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATg caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATggtaagtatgagttgggtgactatacaacttggctagacatttaatattat Alignment from Spaln_aa2Genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATGgtaagtatgagttgggtgactatacaacttggctagacatttaatattat Alignment from Spaln_nt2Genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATGgtaagtatgagttgggtgactatacaacttggctagacatttaatattat Alignment from Pairagon AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATGgtaagtatgagttgggtgactatacaacttggctagacatttaatattat Alignment from Exonerate_protein2genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATGgtaagtatgagttgggtgactatacaacttggctagacatttaatattat Alignment from Exonerate_coding2genome AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATGgtaagtatgagttgggtgactatacaacttggctagacatttaatattat Alignment from GeneWise AAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG caccaatactagctgtaagtgagtgcaagctgtgtctgcttgtctttcagAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTCTTGCCAGAAACTTTCCTTGCAAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCAAGTGTTGCCAAAAGCATGATGGCTTGCCTTCTTGCTTCACTGAAAGCCAATGgtaagtatgagttgggtgactatacaacttggctagacatttaatattat #### Mgea5_ID9584_14 --> 1 - 0 Original Alignment gTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcaggTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc Alignment from CESAR gTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcaggTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc Alignment from Spaln_aa2Genome GTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcagGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc Alignment from Spaln_nt2Genome GTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcagGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc Alignment from Pairagon GTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcagGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc Alignment from Exonerate_protein2genome GTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcagGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc Alignment from Exonerate_coding2genome GTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcagGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc Alignment from GeneWise GTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAG gtttgttagtggataacatgctcatgccagtgttctgcttcaacctgcagGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTATTGTTTTGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTGGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCTTGGATTCCCTTTATGCAAGAGAAGTACACCAAGCCAAATGGTGACAAAGAGCTCTCAGAAGCTGAGgtaagccactagtttacgagttattatagttcaaacatcatctcttagcc #### Mgea5_ID9598_3 --> 1 - 1 Original Alignment gCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTg caagtccctattgttgcctacttatgcatggctgtttcttctccctccaggCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTggtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat Alignment from CESAR gCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTg caagtccctattgttgcctacttatgcatggctgtttcttctccctccaggCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTggtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat Alignment from Spaln_aa2Genome GCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTG caagtccctattgttgcctacttatgcatggctgtttcttctccctccagGCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTGgtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat Alignment from Spaln_nt2Genome GCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTG caagtccctattgttgcctacttatgcatggctgtttcttctccctccagGCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTGgtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat Alignment from Pairagon GCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTG caagtccctattgttgcctacttatgcatggctgtttcttctccctccagGCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTGgtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat Alignment from Exonerate_protein2genome GCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTG caagtccctattgttgcctacttatgcatggctgtttcttctccctccagGCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTGgtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat Alignment from Exonerate_coding2genome GCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTG caagtccctattgttgcctacttatgcatggctgtttcttctccctccagGCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTGgtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat Alignment from GeneWise GCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTG caagtccctattgttgcctacttatgcatggctgtttcttctccctccagGCTCCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATACAATGTTTTGGCAAGAGATGTACTCAGAGGAAGAAGCTGgtatggtctatatatggatgtgctagtgtatgattggggccaccaagaat #### Mgea5_ID9599_2 --> 2 - 2 Original Alignment ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagggTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAaggtaaattccttgcaccacagtaccatggaacactggagcactgagaacct Alignment from CESAR ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagggTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAaggtaaattccttgcaccacagtaccatggaacactggagcactgagaacct Alignment from Spaln_aa2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtaaattccttgcaccacagtaccatggaacactggagcactgagaacct Alignment from Spaln_nt2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtaaattccttgcaccacagtaccatggaacactggagcactgagaacct Alignment from Pairagon GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtaaattccttgcaccacagtaccatggaacactggagcactgagaacct Alignment from Exonerate_protein2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtaaattccttgcaccacagtaccatggaacactggagcactgagaacct Alignment from Exonerate_coding2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtaaattccttgcaccacagtaccatggaacactggagcactgagaacct Alignment from GeneWise GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG aggctgactctcattttgagctaatctttgtgttgctgctttatgtctagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtaaattccttgcaccacagtaccatggaacactggagcactgagaacct #### Mlana_ID6335_3 --> 0 - 0 Original Alignment GACAAA------AGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGgtaataggtagtagccctcaattcagatatatgagatctaagcctagtta Alignment from CESAR GACAAA------AGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGgtaataggtagtagccctcaattcagatatatgagatctaagcctagtta Alignment from Spaln_aa2Genome GACAAAAGGCGTCAT------ATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGgtaataggtagtagccctcaattcagatatatgagatctaagcctagtta Alignment from Spaln_nt2Genome GACAAAAGGC------GTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGgtaataggtagtagccctcaattcagatatatgagatctaagcctagtta Alignment from Pairagon G------ACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGgtaataggtagtagccctcaattcagatatatgagatctaagcctagtta Alignment from Exonerate_protein2genome GAC------AAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGgtaataggtagtagccctcaattcagatatatgagatctaagcctagtta Alignment from Exonerate_coding2genome GAC------AAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTGGTTCCCAACGCTCCGCCTGCCTATGAGAAGCTCTCTTCACCGCCA attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGGTAATAGGTAGTAGCCCTCAATTCAGATATATGAGATCTAAGCCTagtta Alignment from GeneWise ------GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG attattgttattgatatttttattactaatctcattatttctggtgctagGACAAAAACAAAAGGCGTCATATTGGTATTCAGAAAACCTCAAGTGAAAGATGCTCATGCGAGTGCCCTGATCACCAGGACAGTCGACTCTCTTCACAGGAGAAATCTCACCAGCCAGTGgtaataggtagtagccctcaattcagatatatgagatctaagcctagtta #### Morn4_ID8390_2 --> 2 - 2 Original Alignment gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag tctagaagggtctctatttcatcctgtagatatcattcccctcccaccaggcTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAaggtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact Alignment from CESAR gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag tctagaagggtctctatttcatcctgtagatatcattcccctcccaccaggcTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAaggtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact Alignment from Spaln_aa2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG tctagaagggtctctatttcatcctgtagatatcattcccctcccaccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact Alignment from Spaln_nt2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG tctagaagggtctctatttcatcctgtagatatcattcccctcccaccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact Alignment from Pairagon GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG tctagaagggtctctatttcatcctgtagatatcattcccctcccaccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact Alignment from Exonerate_protein2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG tctagaagggtctctatttcatcctgtagatatcattcccctcccaccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact Alignment from Exonerate_coding2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG tctagaagggtctctatttcatcctgtagatatcattcccctcccaccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact Alignment from GeneWise GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG tctagaagggtctctatttcatcctgtagatatcattcccctcccaccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGACACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtgagtaccaagtcaattctttggcaagactctaatacaaatagggcact #### Mrpl21_ID22_4 --> 2 - 0 Original Alignment agGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagaaGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc Alignment from CESAR agGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagaaGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc Alignment from Spaln_aa2Genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagAAGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc Alignment from Spaln_nt2Genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagAAGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc Alignment from Pairagon AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagAAGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc Alignment from Exonerate_protein2genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagAAGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc Alignment from Exonerate_coding2genome AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagAAGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc Alignment from GeneWise AGGTTGTGAAGAGGGTGAATGAGCTGATCGCCACGGGCCAGTATGGCCGGCTCTTTGCTGTCGTGCACTTTGCCAGCCACCAATGGAAGGTGACCGCAGAGGACCTGATTCTAATTGAAAATGAGTTGGATATCAAGTGTGGAGAGAGGATTCGGCTGGAGAAG aacctggtgcatgtacaattattcctaactgtgccacgtctctcctctagAAGTTGTGAGGAGGGTGAATGAGCTGATTGCCACTGGGCAGTATGGACGGCTCTTTGCTGCTGTACACTTTGCCAGCCACCATTGGGAGGTGACTGCTGAGGACCTAATTCTAGTTGAAAATGGGTTAGATACCAAGTGTGGAGAGAGAATCCGGTTGGAGAAGgtaagtaaccccttgtgctgtaagcacggagagtgcggctcctagtgagc #### Ms4a10_ID3084_3 --> 0 - 0 Original Alignment TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc Alignment from CESAR TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc Alignment from Spaln_aa2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc Alignment from Spaln_nt2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc Alignment from Pairagon TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc Alignment from Exonerate_protein2genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc Alignment from Exonerate_coding2genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc Alignment from GeneWise TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG tctggtggtatagggtacctgccctccactcctcctccttctgtccccagTTTCTTGTTGCAGGGATGGTGGCCATGACAACAGTGACATTCCCAAAGACCTCTCTAgtcagttggttcctttaaatcatgtcctcaaagtggggggtaggggcacc #### Ms4a13_ID3144_3 --> 0 - 0 Original Alignment TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa Alignment from CESAR TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa Alignment from Spaln_aa2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa Alignment from Spaln_nt2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa Alignment from Pairagon TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa Alignment from Exonerate_protein2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa Alignment from Exonerate_coding2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa Alignment from GeneWise TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG agtgtcctttaactttaacaagtttttatattcattgcatatatttctagTTTGTAATTCCAGGGGCCTTCACTGTAAAAGCAGCGAAATATCAAAGTAGACATATGgtaatgtggaatatggtggtccatatgtacttgtacaaagctgtatacaa #### Ms4a15_ID3092_5 --> 0 - 0 Original Alignment TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg Alignment from CESAR TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg Alignment from Spaln_aa2Genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg Alignment from Spaln_nt2Genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg Alignment from Pairagon TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg Alignment from Exonerate_protein2genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg Alignment from Exonerate_coding2genome TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg Alignment from GeneWise TTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCCTTCGCGGGGACAGCCATTCTTCTCATGGACTTTGGTGTCACTAACTGG ctggacatggtgagtgctttgccccttctgacctcctcctctgtcctcagTTGAAGAGCAGTCTGGGAACCAACATCCTCAGTGCCATGGCAGCATTTGCAGGGACAGCCATTCTTCTCATGGACTTTGGTGTTACTAACTGGgtgcgggggtagctgtcttgctatggataataaacagcgagagacggggg #### Ms4a2_ID3241_4 --> 0 - 0 Original Alignment TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt Alignment from CESAR TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt Alignment from Spaln_aa2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt Alignment from Spaln_nt2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt Alignment from Pairagon TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt Alignment from Exonerate_protein2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt Alignment from Exonerate_coding2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt Alignment from GeneWise TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccagaagcatattgtggtcacttttcttctctttcaatctaagTTTGTTTTGGCTGGATTTTTATCAATTATTTCTAAGAGAAAGAACACATTGTATTTGgtaggtcgccgactgctttgttcgtgcctcagaattgagaaaagaaagtt #### Ms4a3_ID3248_5 --> 0 - 0 Original Alignment GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa Alignment from CESAR GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa Alignment from Spaln_aa2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa Alignment from Spaln_nt2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa Alignment from Pairagon GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa Alignment from Exonerate_protein2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa Alignment from Exonerate_coding2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa Alignment from GeneWise GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG ttgagttttcactctgactgttcttttgacttaaaatgttctgtttttagGGCCTGGTATCGTTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCTATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGAGAGgtaaaaacagcaaaaatgtagggcagtttcagtcacttcagaacacacaa #### Ms4a6b_ID3213_2 --> 0 - 0 Original Alignment GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca Alignment from CESAR GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca Alignment from Spaln_aa2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca Alignment from Spaln_nt2Genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca Alignment from Pairagon GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca Alignment from Exonerate_protein2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca Alignment from Exonerate_coding2genome GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca Alignment from GeneWise GCAATCCAGATCATGTGTGCTGTGATGGTGTTGAGTCTGGGAATCATTTTGGCATCTGTTCCCTCCAATCTACACTTTACCTCAGTGTTTTCAGTCCTGTTAAAATCTGGCTACCCATTTATAGGAGCTTTGTTT atttttctcgtcatggccgggtttacaaatgggtcctcttggcttctcagGCAACCCAGATCATGTGTGCTGTGATGGTATTGAGTCTGGGGATCATTTTGGAATCTGTTGCCTCCAATCTACACTTCACCTCAGTGTTCTCAGTCCTGCTAAAATCTGGTTATCCATTCATAGGAGCCCTGTTTgtaactagactgccagggaataaggtggagaaaaagtgaataaaggccca #### Ms4a6b_ID3214_3 --> 0 - 0 Original Alignment TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc Alignment from CESAR TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc Alignment from Spaln_aa2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc Alignment from Spaln_nt2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc Alignment from Pairagon TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc Alignment from Exonerate_protein2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc Alignment from Exonerate_coding2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc Alignment from GeneWise TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG actggactgcccatgtactgccaatgttttaattgtgtttcattttacagTTTATAGTCTCTGGGATTCCGTCCATTGTAACAGAAACTAAGTCAACAAAAATTTTGgtatgtaaagggtcctaaccctgaactaatgagcacacagaaacaggacc #### Ms4a8a_ID3115_5 --> 0 - 0 Original Alignment CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc Alignment from CESAR CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc Alignment from Spaln_aa2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc Alignment from Spaln_nt2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc Alignment from Pairagon CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc Alignment from Exonerate_protein2genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc Alignment from Exonerate_coding2genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc Alignment from GeneWise CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgtcacctctttgctcctgattggtttcctttttttaagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGGCATTATGCTCTTCATCTCTGACATTAGTATCTCATCAGGATTCATCTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtaggggtgataaacaaaggtctcgaccctcatttctatgcaaccatatc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCA------GCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTACC------AGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTC------AATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAG------CTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTA------CCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg #### Mtl5_ID50_2 --> 0 - 0 Original Alignment GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa Alignment from CESAR GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa Alignment from Spaln_aa2Genome GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa Alignment from Spaln_nt2Genome GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa Alignment from Pairagon GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa Alignment from Exonerate_protein2genome GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa Alignment from Exonerate_coding2genome GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa Alignment from GeneWise GTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGCGGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCCAGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATG aacagtattagacttaatagaatttccacccttgtgtgttcgccttgcagGTGGAAGTCAAGGAAGCAGGTGGTAGTGTACCGGGTGGCAGCCCTGAGGATGCAGCTTTCCAGGCCCCCCTTGCTCAGGAATCCTGCTGCAAGTTCCCATCATCCCAGGAGGCAGAAGAGGCCCCTAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGgtgagggttaaaaagaaagtatacacaaaatcatctttctgcctatccaa #### Mtl5_ID53_5 --> 0 - 2 Original Alignment GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTgg agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTgggtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt Alignment from CESAR GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTgg agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTgggtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt Alignment from Spaln_aa2Genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTGGgtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt Alignment from Spaln_nt2Genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTGGgtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt Alignment from Pairagon GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTGGgtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt Alignment from Exonerate_protein2genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTGGgtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt Alignment from Exonerate_coding2genome GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTGGgtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt Alignment from GeneWise GTTGATAATGGAGCTCTCCCATCAGCTGTCAATGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGG agactcattagacagagctcttaagggtctgtctttggtaatctttatagGTTGATAATGGAGCTCTCCCATCGGCTGTTAACGGTGCTGCCTTTCCCTCTGGGCCTCCTCTCCAAGGGCCACCAAAAATAACACTGTCTGGgtaaacattacaggcagcccactgcctgtcactgggaactaacttgctgt #### Mxi1_ID11271_5 --> 0 - 1 Original Alignment AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAg ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAggtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata Alignment from CESAR AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAg ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAggtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata Alignment from Spaln_aa2Genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAGgtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata Alignment from Spaln_nt2Genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAGgtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata Alignment from Pairagon AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAGgtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata Alignment from Exonerate_protein2genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAGgtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata Alignment from Exonerate_coding2genome AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAGgtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata Alignment from GeneWise AAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAG ctaacaggagtctgtatacagatgtggatctaggatctgtgctctttcagAAACTTGAAGAAGCAGAGAGGAAGAGCCAGCACCAGCTAGAGAACTTGGAACGGGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGATGGAGCGGATACGAATGGACAGCATTGGATCAACCATATCTTCAGATCGCTCAGATTCGGAGCGAGgtgagtaactctcacttcctaagcagacttgagtcttggagtcacagata #### Myof_ID7445_52 --> 1 - 0 Original Alignment cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagcCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa Alignment from CESAR cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagcCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa Alignment from Spaln_aa2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagCCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa Alignment from Spaln_nt2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagCCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa Alignment from Pairagon CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagCCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa Alignment from Exonerate_protein2genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagCCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa Alignment from Exonerate_coding2genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagCCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa Alignment from GeneWise CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gaagctgtttcattcaacacttgacagcctccatcccctcctcccctcagCCGCCCAGAGACCTCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTTTGGCGACGGTTCAAATGGGTCATCATTGGCCTGCTTCTGCTGTTCATCCTCTTGCTGTTTGTGGCTGTGCTCCTGTACTCTCTTCCTgtatgaagagtgctatggagtctaatgaatctatggatctacaatcccaa #### Myof_ID7455_44 --> 1 - 1 Original Alignment tTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAA---------GACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTg gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagaTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTggtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta Alignment from CESAR tTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAA---------GACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTg gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagaTCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTggtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta Alignment from Spaln_aa2Genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAA---------GACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagATCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTGgtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta Alignment from Spaln_nt2Genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGAC---------GGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagATCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTGgtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta Alignment from Pairagon TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAA---------GACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagATCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTGgtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta Alignment from Exonerate_protein2genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAA---------GACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagATCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTGgtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta Alignment from Exonerate_coding2genome TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAA---------GACGGAAGCAGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagATCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTGgtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta Alignment from GeneWise TTCCGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACGCAGTTGCTTCAAAACGTTGCAAGATTCAAAGGCTTCCCGCCACCAGTTCTTTCTGAAGACGGAAGC---------AGAATCCGATACGGAGGTCGAGACTACCATTTGGATGAGTTTG gctatgctgacccatgtcccatagtgtggcctcctgctttgtctccccagATCTGGAGTAAATACCTGGCGAGATCAGCTGAGACCAACAGAGTTGCTCCAAAACATAGCAAGATTTAAAGGCTTCCCACCACCAGTTTTATCTGAAGATGGAAGTGATGGAAGCAGAACCTGGTACGGAGGTCGTGATTACCATCTAGATGAATTTGgtaagtaaaaaagtttggggttgtaagcacagtatagtagcctattgcta #### Myof_ID7462_38 --> 0 - 0 Original Alignment CTGTCGGAAAAG gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagCTATCAGGAAAGgtaatgattgcatacaggttacatcatttttctacacattacaggccgca Alignment from CESAR CTGTCGGAAAAG gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagCTATCAGGAAAGgtaatgattgcatacaggttacatcatttttctacacattacaggccgca Alignment from Spaln_aa2Genome CTGTCGGAAAAG gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagCTATCAGGAAAGgtaatgattgcatacaggttacatcatttttctacacattacaggccgca Alignment from Spaln_nt2Genome CTGTCGGAAAAG gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagCTATCAGGAAAGgtaatgattgcatacaggttacatcatttttctacacattacaggccgca Alignment from Pairagon CTGTCGGAAAAG gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagCTATCAGGAAAGgtaatgattgcatacaggttacatcatttttctacacattacaggccgca Alignment from Exonerate_protein2genome gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagctatcaggaaaggtaatgattgcatacaggttacatcatttttctacacattacaggccgca Alignment from Exonerate_coding2genome gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagctatcaggaaaggtaatgattgcatacaggttacatcatttttctacacattacaggccgca Alignment from GeneWise gcctcctgtacggtatataatgtccaaccaaaatcatctgggttttccagctatcaggaaaggtaatgattgcatacaggttacatcatttttctacacattacaggccgca #### Myof_ID7471_31 --> 2 - 1 Original Alignment gaGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAg gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcaggaGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAggtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt Alignment from CESAR gaGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAg gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcaggaGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAggtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt Alignment from Spaln_aa2Genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcagGAGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAGgtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt Alignment from Spaln_nt2Genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcagGAGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAGgtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt Alignment from Pairagon GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcagGAGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAGgtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt Alignment from Exonerate_protein2genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcagGAGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAGgtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt Alignment from Exonerate_coding2genome GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcagGAGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAGgtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt Alignment from GeneWise GAGTCTACATCTACCACCTGCGCTGCTACATTTATCAAGCCAGGAACCTCATGGCTTTGGACAAAGACAGCTTTTCAG gctgagcaaaactctatagactgcattctctcctgtgtctctctgtgcagGAGTCTACATTTACCACCTGTGCTGCTACACTTATCAAGCCAGGAACCTGATGGCATTGGATAAAGACAGCTTTTCAGgtaccctgaaaatccacagtgccctcttccatgaccaggctagcctgggt #### Myof_ID7475_27 --> 0 - 1 Original Alignment AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAggtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg Alignment from CESAR AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAggtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg Alignment from Spaln_aa2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAGgtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg Alignment from Spaln_nt2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAGgtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg Alignment from Pairagon AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAGgtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg Alignment from Exonerate_protein2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAGgtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg Alignment from Exonerate_coding2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAGgtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg Alignment from GeneWise AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG ctgtagtcttaattccatctgttgtgtttaaccaactgactatgtttcagAATGGAGATAAGGTGGCATCTCCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATCTATGACATAAATCGAGCAGTGGATGAGAAAGgtacctctgagtgtgtatagtgcttaccatacctgcatgacgggagttgg #### Myof_ID7490_12 --> 0 - 1 Original Alignment CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGa taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGagtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga Alignment from CESAR CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGa taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGagtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga Alignment from Spaln_aa2Genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga Alignment from Spaln_nt2Genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga Alignment from Pairagon CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga Alignment from Exonerate_protein2genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga Alignment from Exonerate_coding2genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga Alignment from GeneWise CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA taaatggctcatctgttgcacatgtgattgtgtgtatatttcactttcagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAGAGCAAGCTGTTACTGCCAGCAGGCATTGCCCTTCGGTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGAGGACATCCCCCAGAgtaagtactaccttagccaagcatggggagaatgaaacatatagtgatga #### Myof_ID7492_10 --> 0 - 1 Original Alignment ATTGATGTTGGATTTGTTTATGATGAACCTg ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCggtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg Alignment from CESAR ATTGATGTTGGATTTGTTTATGATGAACCTg ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCggtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg Alignment from Spaln_aa2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCGgtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg Alignment from Spaln_nt2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCGgtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg Alignment from Pairagon ATTGATGTTGGATTTGTTTATGATGAACCTG ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCGgtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg Alignment from Exonerate_protein2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCGgtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg Alignment from Exonerate_coding2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCGgtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg Alignment from GeneWise ATTGATGTTGGATTTGTTTATGATGAACCTG ccagaaggcagatcatcctctggggcctaaagtccctccaatgcctttagGTTGATGTTGGCTTTGTTTATGATGAGCCCGgtgtgtaatgtccccttatcaatctgaagcaccaaacccttctaagtctg #### Myof_ID7501_2 --> 2 - 0 Original Alignment atGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagatGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt Alignment from CESAR atGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagatGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt Alignment from Spaln_aa2Genome ATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt Alignment from Spaln_nt2Genome ATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt Alignment from Pairagon ATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt Alignment from Exonerate_protein2genome ATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt Alignment from Exonerate_coding2genome ATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt Alignment from GeneWise ATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTCTGGAATGAG cgaatcaaaaagctattcccaaaaaagctccctctctcgcccccatgcagATGAGAAAAAGAAAACAAAGAAAGTTGATAATGAACTCAACCCTGTATGGAATGAAgtgagacagacagcttcttgcttcttatgatgaatataacctagcatgtt #### Myrf_ID2712_25 --> 0 - 0 Original Alignment GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg Alignment from CESAR GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg Alignment from Spaln_aa2Genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg Alignment from Spaln_nt2Genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg Alignment from Pairagon GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg Alignment from Exonerate_protein2genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg Alignment from Exonerate_coding2genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg Alignment from GeneWise GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagataaggctgccctgaccttcctttttctttttttattagGGCACATCGCATCAGTGGCCAGTAACCATCTTGTCCTTCCATGAATTCACATACTACTTTCGAGTGACATTGCTAgtatgggcagtctagagcttggaagagggacagggtattgtaatgctagg #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca #### Myrf_ID2729_8 --> 1 - 0 Original Alignment gCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccaggCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc Alignment from CESAR gCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccaggCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc Alignment from Spaln_aa2Genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccagGCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc Alignment from Spaln_nt2Genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccagGCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc Alignment from Pairagon GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccagGCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc Alignment from Exonerate_protein2genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccagGCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc Alignment from Exonerate_coding2genome GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccagGCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc Alignment from GeneWise GCCTATGCTCACCTATCGTGTGGACGCTGACAAGGGCTTCAACTTTTCCGTGGGCGACGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACCGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCCCTGGACTGCTTCTATCTGAAGCTGCATGGTGTGAAG ggggtgtgccccccaaaaccccacaaacgaacttggaatctttcctccagGCCTATGCTCACCTATCGTGTGGATGCTGACAAGGGCTTCAACTTTTCTGTGGGAGATGATGCTTTTGTGTGCCAGAAGAAGAACCACTTCCAGGTGACTGTGTACATCGGCATGCTGGGGGAGCCCAAGTACGTCAAGACACCGGAAGGCCTCAAGCCGCTGGACTGCTTCTATCTGAAGCTGCATGGTGTAAAGgttagtcttggggtagtcttgaaagggagaacaaggggtcctagaacctc #### Myrf_ID2731_7 --> 2 - 2 Original Alignment gcCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGct agagactggatcacagcccaggtttaatcccacccatcttctttgaacaggtCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGctgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc Alignment from CESAR gcCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGct agagactggatcacagcccaggtttaatcccacccatcttctttgaacaggtCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGctgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc Alignment from Spaln_aa2Genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT agagactggatcacagcccaggtttaatcccacccatcttctttgaacagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGCTgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc Alignment from Spaln_nt2Genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT agagactggatcacagcccaggtttaatcccacccatcttctttgaacagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGCTgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc Alignment from Pairagon GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT agagactggatcacagcccaggtttaatcccacccatcttctttgaacagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGCTgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc Alignment from Exonerate_protein2genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT agagactggatcacagcccaggtttaatcccacccatcttctttgaacagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGCTgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc Alignment from Exonerate_coding2genome GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT agagactggatcacagcccaggtttaatcccacccatcttctttgaacagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGCTgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc Alignment from GeneWise GCCTCCTGCAGGACAGTGACAGCCTCAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCGCATCAGCAGAACAAGTGGGCGACCCTGTATGACGCTAACTACAAGGAGCT agagactggatcacagcccaggtttaatcccacccatcttctttgaacagGTCTCCTGCAGGACAGTGACAGCCTTAGTGGCTCCTATTTGGACCCCAACTACCAATCCATCAAATGGCAGCCACATCAGCAGAACAAGTGGGCGACCCTGTATGATGCCAACTACAAGGAGCTgtgagcgacctgagcaactcacatgggtgactccggaccccttgagtttc #### Myrf_ID2738_2 --> 2 - 2 Original Alignment gcCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATct accttaggcctttgggatgcaatttaagtctcatcttcccttccccaaaggcCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACctgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca Alignment from CESAR gcCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATct accttaggcctttgggatgcaatttaagtctcatcttcccttccccaaaggcCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACctgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca Alignment from Spaln_aa2Genome GCCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATCT accttaggcctttgggatgcaatttaagtctcatcttcccttccccaaagGCCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACCTgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca Alignment from Spaln_nt2Genome GCCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATCT accttaggcctttgggatgcaatttaagtctcatcttcccttccccaaagGCCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACCTgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca Alignment from Pairagon GCCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATCT accttaggcctttgggatgcaatttaagtctcatcttcccttccccaaagGCCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACCTgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca Alignment from Exonerate_protein2genome GCCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATCT accttaggcctttgggatgcaatttaagtctcatcttcccttccccaaagGCCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACCTgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca Alignment from Exonerate_coding2genome TTCTTCGAAGGCCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATCT accttaggcctttgggatgcaatttaagtctcatcttcccTTCCCCAAAGGCCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACCTgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca Alignment from GeneWise GCCATGACATCAGCGGTGCCCTGGAGCCCTCCAATATAGACACCAGTATCCTGGAGGAGTACATTGGCAAAGAGGACGCCTCTGATCT accttaggcctttgggatgcaatttaagtctcatcttcccttccccaaagGCCATGATATCAGTGGCGCCCTGGAGCCCTCCAACATAGATGCCAGTATCCTGGAGGAGTACATTGGCAATGAGGATGCCTCAGACCTgtaggcggctatgcaatatccatgggtagtactctgatcaaggtgtcaca #### Naaladl1_ID1445_4 --> 0 - 0 Original Alignment GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat Alignment from CESAR GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat Alignment from Spaln_aa2Genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat Alignment from Spaln_nt2Genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat Alignment from Pairagon GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat Alignment from Exonerate_protein2genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat Alignment from Exonerate_coding2genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat Alignment from GeneWise GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctgcctacctttgggaaaatgtggcatcgagctgcattcctccccggcagGGCCTTCTCGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTCTAACACGTTATGGTGGTGTAGGACGTGGGGCCAAGgtaagtagcacccacaaggaagcaatctggatcaaagggccatgctggat #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg tactcaataattacactcaatttcaatccccttccttcttgtgctttaagtGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTggtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTg tactcaataattacactcaatttcaatccccttccttcttgtgctttaagtGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTggtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from Exonerate_coding2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCATCCAGGGGGCTGTGGAGCCTG tactcaataattacactcaatttcaatccccttccttcttgtgctttaagTGACGTAAAAGTGAGTGTCCACAACAGATTGGAGCTTAGGACCTCTACTAATGTGCTCGGCATCATCCAGGGGGCTGTGGAGCCTGgtgagtccattctcactctaccccgccatcaggtttgcctgcggtctggt #### Naaladl1_ID1449_8 --> 2 - 1 Original Alignment atCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGg catcatctgctgattgctctctgtctttattttgactctgacttctgcaggtCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGggtaataccaccctctccccttcctctggttacacccccagagaccttaga Alignment from CESAR atCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGg catcatctgctgattgctctctgtctttattttgactctgacttctgcaggtCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGggtaataccaccctctccccttcctctggttacacccccagagaccttaga Alignment from Spaln_aa2Genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcatctgctgattgctctctgtctttattttgactctgacttctgcagGTCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGGgtaataccaccctctccccttcctctggttacacccccagagaccttaga Alignment from Spaln_nt2Genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcatctgctgattgctctctgtctttattttgactctgacttctgcagGTCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGGgtaataccaccctctccccttcctctggttacacccccagagaccttaga Alignment from Pairagon ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcatctgctgattgctctctgtctttattttgactctgacttctgcagGTCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGGgtaataccaccctctccccttcctctggttacacccccagagaccttaga Alignment from Exonerate_protein2genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcatctgctgattgctctctgtctttattttgactctgacttctgcagGTCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGGgtaataccaccctctccccttcctctggttacacccccagagaccttaga Alignment from Exonerate_coding2genome ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcatctgctgattgctctctgtctttattttgactctgacttctgcagGTCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGGgtaataccaccctctccccttcctctggttacacccccagagaccttaga Alignment from GeneWise ATCGATACGTGATCTACGGAAACCACCGGGACAGCTGGGTACATGGGGCGGTGGACCCCAGCAGTGGCACTGCTGTCCTCTTGGAGATCTCTCGAGTCCTGGGGACCTTGCTAAAGAAGG catcatctgctgattgctctctgtctttattttgactctgacttctgcagGTCGATATGTGATCTATGGAAACCACCAAGATAGCTGGGTACATGGGGTGCTGGACCCCAGTAGTGGTACTGCCATCCTGTTGGAGATCTCTCAAGTGTCGGGCACCTTGCTAAAAAAGGgtaataccaccctctccccttcctctggttacacccccagagaccttaga #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCaggtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccactc Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCaggtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccaccc Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCAGgtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccactc Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCAGgtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccactc Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCAGgtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccactc Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCAGgtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccactc Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCAGgtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccactc Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcagggtttagcatgctatatttccctgctttttcctgtagATCAGTGCACCAGGGTCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATACTAACCGTGCCAGCCCAGTATATGGGCTGGTTCCCAGgtaggctcagaatgaagtcaggtaggcctgttggcccagcatgtccactc #### Ndufb8_ID9057_4 --> 0 - 0 Original Alignment ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga Alignment from CESAR ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga Alignment from Spaln_aa2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga Alignment from Spaln_nt2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga Alignment from Pairagon ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga Alignment from Exonerate_protein2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga Alignment from Exonerate_coding2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga Alignment from GeneWise ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG gatcatttgaaagaactatttgtgacccctaataagactcttttacatagATACACTGGGACCTGGACATGTATATCAGGAATCGTGTAGACACATCACCTACCCCTGTATCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtacctgtctcatgtgctcgctgggatatatgtgagaccttctctgaaga #### Ndufs8_ID191_5 --> 0 - 0 Original Alignment GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg Alignment from CESAR GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg Alignment from Spaln_aa2Genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg Alignment from Spaln_nt2Genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg Alignment from Pairagon GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg Alignment from Exonerate_protein2genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg Alignment from Exonerate_coding2genome GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg Alignment from GeneWise GCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGCCGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTGTTGATGCCATTGTGGAG tttagggggggccagcctttatcacagttgttgctcttgttccctacaagGCCATTACCATTGAGGCAGAGCCAAGAGCTGATGGCAGCCGCCGAACAACACGCTATGATATCGACATGACTAAGTGCATTTACTGTGGTTTCTGCCAGGAAACCTGCAGTGTTGATGCAATTGTGGAGgtaaccaggctgtgagaagtggctggttctaaggcttcagaatgaatagg #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTggtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTggtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTGgtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTGgtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTGgtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTGgtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTGgtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gatagtgtttaatcacaccttagttaattctttcccttgacttgtctaagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACGGTGGCTGTGTCCCCCACCATTTGCCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGCACCAAATTGTTCAACATCTCTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCTCTTAAAGAGCTGATTGAGAAACATACTGgtaagactggaaccaactcaagagcagggcatcagagggggccctgtaaa #### Ndufv1_ID279_3 --> 1 - 2 Original Alignment gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag gtcaaagccatgacctcggcacagaactactcactgtccttgccctgcagaCTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCaggtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac Alignment from CESAR gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag gccaaagccatgacctcggcacagaactactcactgtccttgccctgcagaCTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCaggtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac Alignment from Spaln_aa2Genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG gtcaaagccatgacctcggcacagaactactcactgtccttgccctgcagACTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCAGgtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac Alignment from Spaln_nt2Genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG gtcaaagccatgacctcggcacagaactactcactgtccttgccctgcagACTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCAGgtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac Alignment from Pairagon GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG gtcaaagccatgacctcggcacagaactactcactgtccttgccctgcagACTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCAGgtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac Alignment from Exonerate_protein2genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG gtcaaagccatgacctcggcacagaactactcactgtccttgccctgcagACTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCAGgtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac Alignment from Exonerate_coding2genome GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG gtcaaagccatgacctcggcacagaactactcactgtccttgccctgcagACTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCAGgtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac Alignment from GeneWise GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG gtcaaagccatgacctcggcacagaactactcactgtccttgccctgcagACTAAAAGACGCCCTAAGACGCGGTGACTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGGGCTGGCTTCCCCACAGGCCTCAAGTGGAGCTTCACAAATAAGCCCTCAGATAGCAGgtaagttgaggagccaaacctagcccttggttacagagctccagtcaaac #### Neurl1a_ID10158_3 --> 0 - 1 Original Alignment ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAggtgagttacttccttatggcccaacagttatatggcccaatggttgcagg Alignment from CESAR ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAggtgagttacttccttatggcccaacagttatatggcccaatggttgcagg Alignment from Spaln_aa2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAGgtgagttacttccttatggcccaacagttatatggcccaatggttgcagg Alignment from Spaln_nt2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAGgtgagttacttccttatggcccaacagttatatggcccaatggttgcagg Alignment from Pairagon ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAGgtgagttacttccttatggcccaacagttatatggcccaatggttgcagg Alignment from Exonerate_protein2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAGgtgagttacttccttatggcccaacagttatatggcccaatggttgcagg Alignment from Exonerate_coding2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAGgtgagttacttccttatggcccaacagttatatggcccaatggttgcagg Alignment from GeneWise ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccagggaggagaggtaagctgtggagccccttgtctttttgacagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCTCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAGGAGTTCGCCAATGAGGGTAACATCATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACAAGGGGTGTTCAGTTGTTAGgtgagttacttccttatggcccaacagttatatggcccaatggttgcagg #### Neurl1a_ID10161_4 --> 2 - 1 Original Alignment acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCAG------------AACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagacAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGAC---CTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTggtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc Alignment from CESAR acAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATC------------CCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCg gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagacAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGAC---CTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTggtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc Alignment from Spaln_aa2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagACAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGAC---CTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTGgtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc Alignment from Spaln_nt2Genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCCT---TCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCGCA------------GAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagACAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGA---CCTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTGgtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc Alignment from Pairagon ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCG------------ATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagACAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGA---CCTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTGgtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc Alignment from Exonerate_protein2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagACAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGAC---CTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTGgtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc Alignment from Exonerate_coding2genome ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGC---TCCTTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGC------------CCGATCCCGCAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagACAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGAC---CTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTGgtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc Alignment from GeneWise ACAGCGAGCTGGTGCTGCCCGACTGCCTGCGGCCGCGCTCC---TTCACCGCGCTGCGGCGGCCGTCGCTGCGGTGCGAGGCGGATGAGGCGCGCCTGTCGGTGAGCCTGTGCGACCTCAACGTGCCGGGAGCCGACGGCGACGACGGCGCACCGCCTGCCGGCTGCCCGATCCCG------------CAGAACTCGCTCAATTCTCAGCACAGCCGCGCGCTGCCGGCGCAGCTCGACGGCGACCTGCGCTTCCACGCGCTTCGCGCCGGCGCGCACGTCCGCATCCTGGACGAGCAGACGGTGGCGCGCCTGGAGCACGGGCGCGACGAGCGCGCGCTCGTCTTCACCAGCCGGCCTGTGCGCGTGGCCGAGACCATCTTCATCAAGGTCACGCGCTCGGGCGGGGGGCGAGCGGGCGCGCTGTCCTTCGGGGTCACCACGTGTGACCCTGGCACGCTGCGGCCCGCCGACCTGCCCTTCAGCCCCGAGGCCCTGGTGGACCGCAAGGAGTTCTGGGCGGTGTGTCGCGTGCCCGGGCCTCTGCACAGCGGCGACATCCTGGGCCTGGTGGTCAACGCGGACGGAGAGCTGCACCTGAGTCACAACGGCGCGGCGGCCGGCATGCAGCTGTGCGTGGATGCCTCGCAGCCCCTCTGGATGCTCTTCAGCCTGCATGGCGCCATCACGCAGGTCCGCATCCTCG gtgtgcttaatgtgggataagaaggctatgatatatttatttttacaaagACAGTGAATTAGTGCTCCCTGACTGTCTGCAGCCACACTCCTCATTCACCACATTGTGGCAACCATCATTGCGATGTGAGGCAGACGAGGCCCACCTTTCAGTGAGCCTGTGTGGCCTCAATGTGTCGGGGGCTGACAGTGATGATGGTACAGCACCTGCAGGTTGCCCAATCCCACACCCTATCCCACAGAACTTATCCAACTCACAGTACACCCGTGCACTTCCAGCACAGCTTGATGGTGACCCGCACTTCCATGCACTTTGCACTGGTGTGGATGTCCGCATCCTAGATGAGCAAACAGTGGCACACCTGAAACATGGGCGTGATGAGCGCATGCTTGTATTCACCAGCAGGCCTGTGCGTGTCGCTGAGACCATCTTCATTAAGGTCATTCACTCTGGTGGGGGGCAAGCAGGTTCACTGTCCTTTGGGGTCACCACATGTGACCCTGGCACTCTGCGGCCTGCTGACCTGCCCTTCAGCCCTGAC---CTGGTGGACCGCAAGGAATTCTGGGCAGTGTGTCGTGTGCCTGGGCCACTGCACAGTGGTGAGATTCTGGGCCTTGTGGTCAACATGGATGGTGAGCTACACTTGAGTCATAATGGTGCAACAGCTGGTATGCAACTGTGTGTGGATGCCTCCCAGCCCCTTTGGATGCTCTTCAGCCTGCATGGAACCATTACACAGGTCCGCATCCTTGgtgagtgctccactcaccaggacataatgcccttccggtccatagcaggc #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagccCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagccCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcagggttgagggttaacatgcaccaaatttctttctttttttttttcagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTCTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtgagtccgagtatgggctaccatgagatctccagggtgttgggtttcaa #### Nhlrc2_ID12133_3 --> 2 - 1 Original Alignment atGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAg tgactatttccaggttcacataatgtctttaacattatctttttaaccagatGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAggtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt Alignment from CESAR atGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAg tgactatttccaggttcacataatgtctttaacattatctttttaaccagatGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAggtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt Alignment from Spaln_aa2Genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG tgactatttccaggttcacataatgtctttaacattatctttttaaccagATGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAGgtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt Alignment from Spaln_nt2Genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG tgactatttccaggttcacataatgtctttaacattatctttttaaccagATGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAGgtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt Alignment from Pairagon ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG tgactatttccaggttcacataatgtctttaacattatctttttaaccagATGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAGgtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt Alignment from Exonerate_protein2genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG tgactatttccaggttcacataatgtctttaacattatctttttaaccagATGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAGgtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt Alignment from Exonerate_coding2genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG tgactatttccaggttcacataatgtctttaacattatctttttaaccagATGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAGgtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt Alignment from GeneWise ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG tgactatttccaggttcacataatgtctttaacattatctttttaaccagATGGTCTTCTGATTGTTGGAGTTCACTCGGCTAGGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACATCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCATTGCTATTTCCTGGCAAAGTAGCAGTGGACCATGCTACAGGTCGTCTTGTGGTGGCAGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAGAGTAGTATAGGAGgtgagtttccctcctttccatgttgctgtggataaatctgtcagatgttt #### Nmrk1_ID4440_6 --> 1 - 1 Original Alignment tACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTg tattcaattgtaatattcaattgtaacccatctttgctctttccctccagtACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTggtctggccctcttgccccttttgctacttcagggaattcctttcccatca Alignment from CESAR tACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTg tattcaattgtaatattcaattgtaacccatctttgctctttccctccagtACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTggtctggccctcttgccccttttgctacttcagggaattcctttcccatca Alignment from Spaln_aa2Genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tattcaattgtaatattcaattgtaacccatctttgctctttccctccagTACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTGgtctggccctcttgccccttttgctacttcagggaattcctttcccatca Alignment from Spaln_nt2Genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tattcaattgtaatattcaattgtaacccatctttgctctttccctccagTACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTGgtctggccctcttgccccttttgctacttcagggaattcctttcccatca Alignment from Pairagon TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tattcaattgtaatattcaattgtaacccatctttgctctttccctccagTACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTGgtctggccctcttgccccttttgctacttcagggaattcctttcccatca Alignment from Exonerate_protein2genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tattcaattgtaatattcaattgtaacccatctttgctctttccctccagTACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTGgtctggccctcttgccccttttgctacttcagggaattcctttcccatca Alignment from Exonerate_coding2genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tattcaattgtaatattcaattgtaacccatctttgctctttccctccagTACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTGgtctggccctcttgccccttttgctacttcagggaattcctttcccatca Alignment from GeneWise TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG tattcaattgtaatattcaattgtaacccatctttgctctttccctccagTACCAGGGTATATGATCCGCCAGACCCTCCAGGGTATTTTGATGGCCATCCCTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGTTCCATCACCTGGGATCTTGgtctggccctcttgccccttttgctacttcagggaattcctttcccatca #### Noc3l_ID7663_12 --> 0 - 0 Original Alignment TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt Alignment from CESAR TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt Alignment from Spaln_aa2Genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt Alignment from Spaln_nt2Genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt Alignment from Pairagon TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt Alignment from Exonerate_protein2genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt Alignment from Exonerate_coding2genome TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt Alignment from GeneWise TGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTG gtgatagggttgcttcttagaattgtttgtctgtaactgccatgtttcagTGGAAGAAAGCAGAAGAGAAACTAGAGCGGGAACTTCGGGAGGCCGAAGCTTCGGAAAGCACTGAGAAAAAGCTGAAACTGgtatgtagttctataatctcagacttccttgaatgattgtgattgaaagt #### Noc3l_ID7664_11 --> 0 - 0 Original Alignment ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat Alignment from CESAR ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat Alignment from Spaln_aa2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat Alignment from Spaln_nt2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat Alignment from Pairagon ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat Alignment from Exonerate_protein2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat Alignment from Exonerate_coding2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat Alignment from GeneWise ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG acgcaacccttagggtaagccttgtgtgcctccctgtctccgggctgcagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGACTCTGTCACAAATGCAAAGGAAAgtcagtcttgttttatctttcattttgctatatactcagtattggtgaat #### Noc3l_ID7665_10 --> 0 - 0 Original Alignment GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg Alignment from CESAR GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg Alignment from Spaln_aa2Genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg Alignment from Spaln_nt2Genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg Alignment from Pairagon GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg Alignment from Exonerate_protein2genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg Alignment from Exonerate_coding2genome GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg Alignment from GeneWise GTATCTGAAATGTGTTGCGAAGCAGTAAAGAAACTCTTTAAACAAGATAAATTAGGCCAAGCTTCTCTGGGTGTCATTAAAGTCATCTCTGGTTTTGTAAAGGGCAGAAATTACGAAGTTAGGCCAGAG gtgctgctttcatgtttgtgctgctatattgatctctttctttttgaaagGTATCTGAAATGTGTTGTGAAGCAGTAAAAAAACTCTTTAAACAAGATAAGTTGGGCCAAGCGTCTCTAGGTGTTATTAAAGTCATCTCTGGTTTTGTAGAGGGCAGAAATTATGAAGTTAGGCCAGAAgtaagcctctgattcttaattacaagaaggtgatttttgtatataccatg #### Noc3l_ID7666_9 --> 2 - 0 Original Alignment acTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagacTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATT------GTTATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt Alignment from CESAR acTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagacTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATTGTT------ATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt Alignment from Spaln_aa2Genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagACTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATTGTT------ATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt Alignment from Spaln_nt2Genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagACTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATTG------TTATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt Alignment from Pairagon ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagACTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATTGTT------ATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt Alignment from Exonerate_protein2genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagACTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATTGTT------ATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt Alignment from Exonerate_coding2genome ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagACTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATTGTT------ATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt Alignment from GeneWise ACTGGAAGCAAAGGAAGCTGAAGAAGAGCAATGTGGTGTCCTTAAAGGCCTACAAAGGGCTGGCTGAAGTGGCAGTGAAGAGCCTGTGTGAGCTGTTGGTGGCCCTGCCCCATTTTAACTTTCACAACAACATCATTGTACTGATTGTCCCTCTGATGAACGATGGGTCAAAACCG tgccctgatgaaactccagtaatttgagtatgaattcatttgttgtttagACTGGAAACAGAGAAAGCTGAAGAAAAGCAATGTGGTGTCCTTAAAGGCCTACAGGGGGCTAGCTCAAGTTGCAGTAAAGAGCCTTTGTGAGCTGTTAGTGGCACTACCGCATTTTAACTTTCATAACAACATCATAGTACTTATTGTT------ATGAATGATGCATCAAGACTAgtaggttattctaaaagatccctgagtgtgggtttaatcctctagtcttt #### Npas4_ID774_7 --> 1 - 1 Original Alignment tGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAg gaaagactacgatggagccattaatgaaggctatttgagttctttttcagtGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAggtaagtatagcctgagtgtcccaacgaccttgcccaactgatcagacagt Alignment from CESAR tGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAg gaaagactacgatggagccattaatgaaggctatttgagttctttttcagtGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAggtaagtatagcctgagtgtcccaacgaccttgcccaactgatcagacagt Alignment from Spaln_aa2Genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG gaaagactacgatggagccattaatgaaggctatttgagttctttttcagTGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtaagtatagcctgagtgtcccaacgaccttgcccaactgatcagacagt Alignment from Spaln_nt2Genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG gaaagactacgatggagccattaatgaaggctatttgagttctttttcagTGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtaagtatagcctgagtgtcccaacgaccttgcccaactgatcagacagt Alignment from Pairagon TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG gaaagactacgatggagccattaatgaaggctatttgagttctttttcagTGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtaagtatagcctgagtgtcccaacgaccttgcccaactgatcagacagt Alignment from Exonerate_protein2genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG gaaagactacgatggagccattaatgaaggctatttgagttctttttcagTGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtaagtatagcctgagtgtcccaacgaccttgcccaactgatcagacagt Alignment from Exonerate_coding2genome TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAG gaaagactacgatggagccattaatgaaggctatttgagttctttttcagTGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGgtaagtatagcctgagtgtcccaacgaccttgcccaactgatcagacagt Alignment from GeneWise TGACACGGAAGCCTGGAGCCTCCGCCAGCAGCTAAACTCTGAAGACACCCAGGCAGCCTATGTCCTAGGAACCCCAGCTGTGCTACCCTCATTCTCTGAGAATGTCTTCTCCCAGGAGCAATGCTCTAATCCACTCTTTACACCATCCCTGGGGACTCCTAGAAGTGCCAGCTTCCCCAGGGCTCCTGAACTAGGTGTGATCTCAACACCAGAAGAGCTTCCCCAACCCTCCAAAGAGCTGGACTTCAGTTACCTGCCATTCCCTGCTAGGCCTGAGCCTTCCCTCCAAGCAGACCTGAGCAAGGATTTGGTGTGTACTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCCTTCCTCTTCAGCCTCCATGAACCCTTCCAGACTCACTTGCCCCCTCCGTCCAGCTCTCTCCAAGAACAGCTGACACCAAGTACAGTGACTTTCTCTGAACAGTTGACACCCAGCAGTGCTACCTTCCCAGACCCACTAACCAGTTCACTACAAGGACAGTTGACAGAAAGCTCAGCCAGAAGCTTTGAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTACTTCCCAGCACTGCCACATTCCCAGAGCCTCTGGGCAGCCCCGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCCAGCCAAACCTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTACTTCGCCCAGGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGCAGCCCTGGTAATGGGGACTGTACACTCCTGGCCCTAGCTCAGCTCCGGGGCCCCCTCTCTGTGGATGTCCCCCTGGTGCCCGAAGGCCTGCTCACACCTGAGGCCTCTCCAGTCAAGCAAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATCGTCTCATTCAGCAGATCAGCCAGTTGGCTCAGGGCGTGGACAGGCCCTTCTCAGCTGAGGCTGGCACTGGGGGGCTGGAGCCACTTGGAGGGCTGGAGCCCCTGAACCCTAACCTGTCCCTGTCAGGGGCTGGACCCCCTGTGCTTAGCCTGGATCTTAAACCCTGGAAATGCCAGGAGCTGGACTTCCTGGTTGACCCTGATAATTTATTCCTGGAAGAGACGCCAGTGGAAGACATCTTCATGGATCTTTCTACTCCAGACCCCAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTGTCACCTTGCAACAACCTGTCCCCAGAAGATCACAGCTTCCTGGAGGACTTGGCCACCTATGAAACCGCCTTTGAGACAGGTGTCTCAACATTCCCCTACGAAGGGTTTGCTGATGAGTTGCATCAACTCCAGAGCCAAGTTCAAGACAGCTTCCATGAAGATGGA---AGTGGAGGGGAACCAACGTTT gaaagactacgatggagccattaatgaaggctatttgagttctttttcagTGACATGGAAGCCTGGAGCCTCCGCCAGCAGCTAAATACTGAAGACACCCAGGCAGCCTACATATTAGGAATCCCAGCTGTGCTACCCTCCTTCTCTGAGAATGTCTTTGCACACGAGCAATGCTCTAACCCACTTTTTACACCATCCCTGGGGACACCTAGAAGTGCCAGCTTCCCCAAGGCTCCTGAACTCGGTGTCATCTCCACACCAGAAGAGCTCCCCCAACCTTCTAAAGAGCTTGACTTCAGCTACCTGCCCTTCCCTGCCAGGCCTGAGCCTTCCCTCCAAGCGGACCTGAGCAAGGATCTGGTGTGTTCTCCACCTTACACACCCCACCAGCCAGGAGGCTGTGCTTTCCTCTTCAGCCTCCATGAACCCTTCCAAACTCAGTTGCCCCCTCCATCCAGCTCTCTCCAAGAACAGTTGACACCAAGTACAGTAACCTTCTCTGAACAGTTGACACCGAGTAGTATTACCTTCCCAGACCCCCTAACAAGTTCACTACAAGGACAGTTGACTGAAAGCTCAGCCAGATGTTTCAAAGACCAGTTGACTCCATGCACCTCTTCCTTCCCTGACCAGCTTCTTCCCAGCACTGCCACTTTCCCCGAGCCACTAGGCAGCCCTGCCCATGAGCAGCTGACTCCTCCCAGCACAGCATTCCAGGCTCATCTGAACAGCCCTAGCCAGACTTTCCCAGAGCAACTGAGCCCCAATCCTACCAAGACTTATTTTGCCCAAGAGGGATGCAGTTTTCTCTATGAGAAGTTGCCCCCAAGTCCTAGTAGCCCTGGTAATGGGGACTGCACACTCTTGGCCCTTGCCCAGCTTCGGGGCCCCCTGTCTGTGGATGTCCCCCTTGTGCCTGAAGGTCTGCTTACGCCTGAGGCATCTCCAGTCAAGCGAAGTTTCTTCCACTACACAGAGAAAGAGCAAAATGAGATAGATGATCTCATCCAGCAGATCAGTCAATTAGCCCAGGGTGTAGACCGCTCCTTCTCAGCTGAGGCTGGCACTGGGGGGTTGGAGCCACTTGGAGGACTGGAACCCCTGAACCCTAACCTATCTCTCTCTGGGGCTGGACCTCCAGTACTCAGCCTGGATCTTAAACCCTGGAAATGCCAGGAACTGGACTCTCTGATTGACCCTGATAATTTATTCTTGGAAGAGACACCAGTGGAAGACATCTTCATGGATCTTTCTAGTCCGGACCCTAATGGGGAATGGGGTTCAGGGGATCCTGAGGCAGAGGTCCCAGGAGGGACCCTCTCACCTTGCAACAACCTCCCTCCAGAAGATCACAGCTTTCAGGAGGACTTGGCCACCTATGAGACTGCCTTTGAGACAAGTGTCTCAACATTCCCTTATGAAGGTTTTGCTGATGAGTTGCATCAACTTCAGAGCCAAGTTCAAGACACCTTCCATGAAGGTAAGTATAGCCTGAGTGTCCCAACGACCttgcccaactgatcagacagt #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagtgGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATaggtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagtgGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATaggtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATAGgtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATAGgtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATAGgtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATAGgtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATAGgtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagcccttgaggtgtttaacaaaaattctccaaacagTGGCTGAAAGTGGAGATATCCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATGTTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAACTACCCTAATAGgtaatatggaaggcatcagatgatgacaacagctgagtttggcttaggac #### Nrxn2_ID1733_2 --> 2 - 1 Original Alignment agGAACACCCCATGGAAg actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagaaGAACACCCCATGGAAggtgagagtgccctcctttcattgatgtctttcatatgtctccatgaggtc Alignment from CESAR agGAACACCCCATGGAAg actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagaaGAACACCCCATGGAAggtgagagtgccctcctttcattgatgtctttcatatgtctccatgaggtc Alignment from Spaln_aa2Genome AGGAACACCCCATGGAAG actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagAAGAACACCCCATGGAAGgtgagagtgccctcctttcattgatgtctttcatatgtctccatgaggtc Alignment from Spaln_nt2Genome AGGAACACCCCATGGAAG actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagAAGAACACCCCATGGAAGgtgagagtgccctcctttcattgatgtctttcatatgtctccatgaggtc Alignment from Pairagon AGGAACACCCCATGGAAG actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagAAGAACACCCCATGGAAGgtgagagtgccctcctttcattgatgtctttcatatgtctccatgaggtc Alignment from Exonerate_protein2genome AGGAACACCCCATGGAAG actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagAAGAACACCCCATGGAAGgtgagagtgccctcctttcattgatgtctttcatatgtctccatgaggtc Alignment from Exonerate_coding2genome actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagaagaacaccccatggaaggtgagagtgccctcctttcattgatgtctttcatatgtctccatgaggtc Alignment from GeneWise AGGAACACCCCATGGAAGGTCCG---GCTCACCTGACGTTAAACAGCGAAGTA- actccttactcacatctcctgctgccttacctgtgaccgtcctttgtcagAAGAACACCCCATGGAAGGTGAGAGTGCCCTCCTTTCATTGATGTCTTTCATATgtctccatgaggtc #### Nrxn2_ID1740_4 --> 2 - 1 Original Alignment taGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAg gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagtaGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAggtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc Alignment from CESAR taGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAg gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagtaGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAggtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc Alignment from Spaln_aa2Genome TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc Alignment from Spaln_nt2Genome TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc Alignment from Pairagon TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc Alignment from Exonerate_protein2genome TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc Alignment from Exonerate_coding2genome GGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGGCAAG gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagtagGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGA-GAGGAGGAGCCGGCGATGTGCACCAGCCGACAA-----AAGgtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc Alignment from GeneWise --GGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtgtatgccacaaagcccatacacttaaattcaaacctaatactgtatagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaagcgatcccacatccctaagacagcccaacccttgtcctgtattggc #### Nrxn2_ID1751_7 --> 0 - 0 Original Alignment GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTGACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt Alignment from CESAR GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTGACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt Alignment from Spaln_aa2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTGACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt Alignment from Spaln_nt2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTGACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt Alignment from Pairagon GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTGACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt Alignment from Exonerate_protein2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTGACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt Alignment from Exonerate_coding2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTGACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt Alignment from GeneWise ATTGGACACGCTATGGTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC gcagtttatgtcggttgtctcctgtataactccaatcttctgctctgcagGTG---------------ACGATCTCAGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCCGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTCAGCAACAACTTCATGGGTTGCCTCACAGATgtaagaggggttgtggtggttgactagcctgcctgcccctaggttgcctt #### Nrxn2_ID1753_9 --> 2 - 1 Original Alignment gcTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGC------GTTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAg ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccaggcTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAggtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga Alignment from CESAR gcTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAg ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccaggcTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAggtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga Alignment from Spaln_aa2Genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccagGCTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAGgtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga Alignment from Spaln_nt2Genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGG---GCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccagGCTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAGgtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga Alignment from Pairagon GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGG---GCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCG------TTGCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccagGCTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAGgtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga Alignment from Exonerate_protein2genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccagGCTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAGgtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga Alignment from Exonerate_coding2genome GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTG---GGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccagGCTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAGgtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga Alignment from GeneWise GCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCTGGAGAGTGAGCTGTACCTGGGC---GGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTGTGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAGATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTT------GCTCCTTTCTGCTCCCGGGAGACCCTGAAGCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGACTGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAG ttggtgctaagttctctccatactgaggcagcgccttgcttttttgccagGCTCCATTTCTGTGAACAGCCGCAGTACACCATTCTTGGCCACAGGAGAAAGCGAGGTCCAGGACCTGGAGAGCGAGCTGTACTTGGTTTGTGGTCTTCCTGAGGGGGGGCGAGTGGACCTGCCCCTGCCCCCTGAGGTGTGGACCGCAGCTCTCCGGGCTGGCTATGTAGGCTGTGTAAGAGACCTCTACATTGATGGACGCAGTCGGGATCTCCGAGGCCTGGCTGAGGCCCAAGAGGCCGCTGGTGTGACACTGGCACCTTTTGCCTCTCGGGAAACCTTGAGACAGTGTGCTCTGGCCCCCTGTCGAAATGGGGGCATTTGTCGTGAGGGTTGGAACCGATTTGACTGTGACTGTATTGGTACTGGCATACTAGGTAGGGTCTGTGAGAGAGgtaagtcctgctgccctgtgccctgagaagaaagaaagaaataggagtga #### Nt5c2_ID10039_14 --> 2 - 1 Original Alignment gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt tagtctagtacctaattggtacacttttccattacttttcaatgtttcaggtTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTtgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta Alignment from CESAR gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt tagtctagtacctaattggtacacttttccattacttttcaatgtttcaggtTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTtgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta Alignment from Spaln_aa2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtacctaattggtacacttttccattacttttcaatgtttcagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTTgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta Alignment from Spaln_nt2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtacctaattggtacacttttccattacttttcaatgtttcagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTTgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta Alignment from Pairagon GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtacctaattggtacacttttccattacttttcaatgtttcagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTTgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta Alignment from Exonerate_protein2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtacctaattggtacacttttccattacttttcaatgtttcagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTTgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta Alignment from Exonerate_coding2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtacctaattggtacacttttccattacttttcaatgtttcagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTTgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta Alignment from GeneWise GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtacctaattggtacacttttccattacttttcaatgtttcagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTTGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCAGACAAGAGTTgtgaggaacacccttctcagcttagcctttcagctcacctctctacctta #### Nt5c2_ID10042_11 --> 0 - 0 Original Alignment AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt Alignment from CESAR AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt Alignment from Spaln_aa2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt Alignment from Spaln_nt2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt Alignment from Pairagon AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt Alignment from Exonerate_protein2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt Alignment from Exonerate_coding2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt Alignment from GeneWise AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG tgcctttgttgttgtcttatgagcaatttgctttttcttttccctcttagAAAATTATGACTTACCTGTTTGATTTCCCACATGGTCCTAAGgtaagttagacctggtcaagctgacttactatcaccttgcattaattagt #### Nt5c2_ID10044_9 --> 0 - 0 Original Alignment GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt Alignment from CESAR GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt Alignment from Spaln_aa2Genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt Alignment from Spaln_nt2Genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt Alignment from Pairagon GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt Alignment from Exonerate_protein2genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt Alignment from Exonerate_coding2genome GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt Alignment from GeneWise GGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAGTATGTCGTCAAGGAT ggtgctaggaactgtgacctgctctcttgtctaaaatgttttctttccagGGCTCCCTTAAGGAGAAGACGGTTGAAAATCTTGAGAAATATGTCGTCAAGGATgtgagtggaaagacaatatcaggtcggtatggccctccttttactttttt #### Nudt22_ID1973_2 --> 0 - 0 Original Alignment GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac Alignment from CESAR GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac Alignment from Spaln_aa2Genome GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac Alignment from Spaln_nt2Genome GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac Alignment from Pairagon GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac Alignment from Exonerate_protein2genome GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac Alignment from Exonerate_coding2genome GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac Alignment from GeneWise GCCCTGTGCTCTGGTGGCATCCCCCGGCACAAGGACCTCCCCGGGTTGCTGGTGGTACGAGAACTCTTCTCCAGTGTCCTACAGGAGATCTGTGATGAG ggaggtatggtaaatctagtagatgaaaactgttgcctttttattataagACCCTGTGCTCTGGTGGCATCCCACGGCACAAGGACCTTCCTGGGCTACTTGTGATACGAGAACTATTTTCTGGTGTCCTACAGGAGTTACGTGATGTGgtgagttatgaggaacctatacagtggagagggtatgcgtagactctcac #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa Alignment from CESAR ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa Alignment from Spaln_nt2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa Alignment from Pairagon ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtttttacattgtagccaattgtcttctaaccttttggatgtgtgttcagATATCAATCATCATTAATACATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCTGAACAAATAGAGCAGCTCAAGgtaactctgggtctagtcagaggccctcaaccctcatcatagttatctaa #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAggtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAggtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAGgtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAGgtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc Alignment from Pairagon CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAGgtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAGgtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAGgtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcatagttatctaaattcctttctgtcttccctctagCTTATCATGAGCAAACAATATGACGGTAATCAGCAAGCACTTGACCTTAAGGAGCTTCGCTCAGACCCAGgtacttcaaacctcaatagttcagagttattgagggggagaggctgggtc #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from GeneWise CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta #### Nxf1_ID2350_10 --> 0 - 2 Original Alignment TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCaggtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from CESAR TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCaggtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Spaln_aa2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Spaln_nt2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Pairagon TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Exonerate_protein2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Exonerate_coding2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from GeneWise TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATGAAGTCCTCAAGGAAtgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAg acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATGAAGTCCTCAAGGAAtgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Exonerate_protein2genome acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgtgtctatctctaaatgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Exonerate_coding2genome acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgtgtctatctctaaatgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from GeneWise AGCACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc #### Obfc1_ID10227_8 --> 0 - 1 Original Alignment GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACc actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACcgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc Alignment from CESAR GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACc actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACcgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc Alignment from Spaln_aa2Genome GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACC actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACCgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc Alignment from Spaln_nt2Genome GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACC actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACCgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc Alignment from Pairagon GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACC actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACCgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc Alignment from Exonerate_protein2genome GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACC actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACCgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc Alignment from Exonerate_coding2genome GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACC actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACCgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc Alignment from GeneWise GTAACCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACC actcacggctaggcattaaacaaagcattttggtcttggttattctgcagGTGACAACAAAGGACAAAGAGCTGCAGCAGAAAATCTACCACACCATTAAGGAGGACTGTCAGAAACCCAACCgtaagaagcttctattggatccccttcagcaaagacttcacatctatgtc #### Obfc1_ID10228_7 --> 0 - 0 Original Alignment GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt Alignment from CESAR GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt Alignment from Spaln_aa2Genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt Alignment from Spaln_nt2Genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt Alignment from Pairagon GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt Alignment from Exonerate_protein2genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt Alignment from Exonerate_coding2genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt Alignment from GeneWise GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC atggccttaggttctcaaaggcaagataggtggttctgtggtctccccagGTGGAACTAAAGGACAGTGGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATACTCTACTATgttcgtgatctgcagctgatcccacttgaatcccataagctgtctagagt #### Obfc1_ID10230_6 --> 1 - 0 Original Alignment cAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagcAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg Alignment from CESAR cAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagcAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg Alignment from Spaln_aa2Genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagCAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg Alignment from Spaln_nt2Genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagCAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg Alignment from Pairagon CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagCAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg Alignment from Exonerate_protein2genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagCAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg Alignment from Exonerate_coding2genome CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagCAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg Alignment from GeneWise CAATAAAGACAATTTGGATCTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCTTCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCACGGGCTCGGACCAA cttagtagtgatttctttctgcagtgtggatgggtttgtggtttttttagCAACAAGGATAATCTGGATCTTGCTGGCCTTACCCCTTTGCTGAGTGTGAAAATTAAAGAATTTTTGCAAGAGAAGAAGATGCGAAGCTTCTACCAAAAGGAGTTAGAGACAGTGCAGTCTTTGCATTCTTTGGCCAGTCAACCTGTGACCCACAGACCAGGCTCAGACCAAgtgagtagagtatattctgttaatggtcttcatctaactagtacttgtgg #### Obfc1_ID10231_5 --> 2 - 2 Original Alignment atAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAaa agaggctctattggggttactcccatgggggctgttccctttgaatgcagatAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAaagtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg Alignment from CESAR atAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAaa agaggctctattggggttactcccatgggggctgttccctttgaatgcagatAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAaagtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg Alignment from Spaln_aa2Genome ATAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAAA agaggctctattggggttactcccatgggggctgttccctttgaatgcagATAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAAAgtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg Alignment from Spaln_nt2Genome ATAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAAA agaggctctattggggttactcccatgggggctgttccctttgaatgcagATAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAAAgtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg Alignment from Pairagon ATAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAAA agaggctctattggggttactcccatgggggctgttccctttgaatgcagATAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAAAgtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg Alignment from Exonerate_protein2genome ATAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAAA agaggctctattggggttactcccatgggggctgttccctttgaatgcagATAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAAAgtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg Alignment from Exonerate_coding2genome ATAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAAA agaggctctattggggttactcccatgggggctgttccctttgaatgcagATAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAAAgtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg Alignment from GeneWise ATAAGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAG---CTCTACCAGAAGGTGTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAAA agaggctctattggggttactcccatgggggctgttccctttgaatgcagATAAGGTGGATGATCAAGTGTGGAATATGCAAATCACAAGGATGCTTGAGTTGCCCAAGCTCCTCTATCAGAAGGTGTATGACCAGCCCTTCCGGAATCCAGCCCTACTGGAGGAAAAGGCATTAAAgtaagcttctccctgtcatgacagtgaaaatatggcaacagggaaagttg #### Oosp1_ID3264_3 --> 0 - 2 Original Alignment GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACaa cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACaagtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg Alignment from CESAR GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACaa cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACaagtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg Alignment from Spaln_aa2Genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACAAgtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg Alignment from Spaln_nt2Genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACAAgtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg Alignment from Pairagon GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACAAgtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg Alignment from Exonerate_protein2genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACAAgtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg Alignment from Exonerate_coding2genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACAAgtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg Alignment from GeneWise GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgagatttgtagcataatcacagaaaatatgtttttctttgtttccagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCACATACATCTCAAAAAATGCTTCTCTGCAGGCGGAAATGAGTTTGACATGCATTATGCACAAgtgagatgctaggtgccatgggtgcgtcttaggtgctacctcccccttgg #### Opalin_ID8090_5 --> 0 - 0 Original Alignment GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg Alignment from CESAR GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg Alignment from Spaln_aa2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg Alignment from Spaln_nt2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg Alignment from Pairagon GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg Alignment from Exonerate_protein2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg Alignment from Exonerate_coding2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg Alignment from GeneWise GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG tgtacagctatatgtcactcttttatatagtgaccaccctccttccccagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTCGACAATCCTAAAATATCTGAGgtaaggatgtcttaacataatgcctcagagggacctaaagtagggcatgg #### Osbp_ID3343_2 --> 1 - 1 Original Alignment gTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATG---CTGGCCGAATCAg gctgatatctgacattgtttggttttgcataaatctctttctaaaaacaggTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAggtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga Alignment from CESAR gTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAg gctgatatctgacattgtttggttttgcataaatctctttctaaaaacaggTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAggtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga Alignment from Spaln_aa2Genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG gctgatatctgacattgtttggttttgcataaatctctttctaaaaacagGTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga Alignment from Spaln_nt2Genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTGG---CCGAATCAG gctgatatctgacattgtttggttttgcataaatctctttctaaaaacagGTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga Alignment from Pairagon GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGA---TGCTGGCCGAATCAG gctgatatctgacattgtttggttttgcataaatctctttctaaaaacagGTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga Alignment from Exonerate_protein2genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG gctgatatctgacattgtttggttttgcataaatctctttctaaaaacagGTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga Alignment from Exonerate_coding2genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG gctgatatctgacattgtttggttttgcataaatctctttctaaaaacagGTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga Alignment from GeneWise GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG gctgatatctgacattgtttggttttgcataaatctctttctaaaaacagGTCCAAGGCAGAGATGAGACACACCTGCCAGGGTACAATTAACCTTGCCACAGCCAACATCACTGTTGAGGACTCGTGCAACTTCATCATCTCCAATGGTGGTGCTCAAACTTACCACTTAAAGGCTAGCTCTGAAGTAGAATGTCAGCGCTGGGTGACAGCTCTAGAATTGGCGAGGGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaaggaacactgggctgggaagtatacaagcttctagtcagacgtttga #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagatCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagatCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga #### Otub1_ID2063_3 --> 0 - 0 Original Alignment ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca Alignment from CESAR ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca Alignment from Spaln_aa2Genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca Alignment from Spaln_nt2Genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca Alignment from Pairagon ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca Alignment from Exonerate_protein2genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca Alignment from Exonerate_coding2genome ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca Alignment from GeneWise ATTGCTGTGCAGAATCCTCTGGTGTCAGAGCGGCTGGAACTCTCAGTCCTGTACAAGGAGTATGCTGAGGATGACAACATCTACCAACAGAAGATCAAG ctcgttgtaagtgttagacatggcttcctgtgttgcccatgttcccacagATTGCTGTGCAAAATCCTCTTGTGTCAGAGCGTTTAGAGCTCTCCGTTCTTTGCAAGGAATATGCTGAGGATGACAACATCTACCAGCAGAAGATTAAGgtcagtcgggagggcaggtgtgggcctctttaaatccctgctacttgtca #### Otub1_ID2064_2 --> 2 - 0 Original Alignment gtGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacaggtGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga Alignment from CESAR gtGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacaggtGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga Alignment from Spaln_aa2Genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacagGTGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga Alignment from Spaln_nt2Genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacagGTGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga Alignment from Pairagon GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacagGTGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga Alignment from Exonerate_protein2genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacagGTGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga Alignment from Exonerate_coding2genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacagGTGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga Alignment from GeneWise GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG cagacatgatagaaaacctgggttaaatgtatgttctgttattgatacagGTGTTAATTGTTTAGCATATGATGAAAGCATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtgagtcagagaagaaggtaggggaaggggagttggtaactgaggataga #### Ovol1_ID1085_3 --> 0 - 1 Original Alignment GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTggtgagttggatggggatgccccttgctcatctgaaacctctggacctgat Alignment from CESAR GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTggtgagttggatggggatgccccttgctcatctgaaacctctggacctgat Alignment from Spaln_aa2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtgagttggatggggatgccccttgctcatctgaaacctctggacctgat Alignment from Spaln_nt2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtgagttggatggggatgccccttgctcatctgaaacctctggacctgat Alignment from Pairagon GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtgagttggatggggatgccccttgctcatctgaaacctctggacctgat Alignment from Exonerate_protein2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtgagttggatggggatgccccttgctcatctgaaacctctggacctgat Alignment from Exonerate_coding2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtgagttggatggggatgccccttgctcatctgaaacctctggacctgat Alignment from GeneWise GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG cttagttatgtttttaaaagatatgccactgtcccattttctctctgcagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtgagttggatggggatgccccttgctcatctgaaacctctggacctgat #### Ovol1_ID1086_2 --> 2 - 0 Original Alignment tcAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagtcAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc Alignment from CESAR tcAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagtcAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc Alignment from Spaln_aa2Genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagTCAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc Alignment from Spaln_nt2Genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagTCAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc Alignment from Pairagon TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagTCAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc Alignment from Exonerate_protein2genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagTCAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc Alignment from Exonerate_coding2genome TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagTCAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc Alignment from GeneWise TCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACCAGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTATAGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCCAGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAG tttaaggactggtgagttttccttcctaatatctgccatttttcccccagTCAGCCTTGGCTTCTGCCCACCACAGCCCTATCGGGAACCAGAGGCATCTGTGACCGAGCCTCCATCATGCTCACTTGCCTTGGACATGAGCCTTCAAGACTCCAGCTATAGTGTGGCACCAGGGCCCTGTGTGGTGGCTCAGTTGCCCTCTGAAGATGTAGGCCATCTGACAGATCCCCAGAGCAGGGACCGGGGTTTCTTACGAACAAAGATGAAGgtgagtactccccttctgttctgatactcctagacagctatgtttagccc #### Pacs1_ID871_22 --> 1 - 1 Original Alignment gAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAg taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagcAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAggtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc Alignment from CESAR gAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAg taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagcAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAggtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc Alignment from Spaln_aa2Genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagCAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAGgtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc Alignment from Spaln_nt2Genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagCAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAGgtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc Alignment from Pairagon GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagCAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAGgtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc Alignment from Exonerate_protein2genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagCAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAGgtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc Alignment from Exonerate_coding2genome GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagCAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAGgtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc Alignment from GeneWise GAGCCCAAATAGCCCATATGGGGATGTGATTGGTCTCCAGGTGGACTACTGGCTGGGCCACCCTGGGGAGCGAAGGAGAGAAGGTGATAAGAGGGATGCCAGCTCAAAGAACACCCTCAAGAGTGTCTTCCGCTCGGTGCAGGTTTCTCGCCTGCCACATGCAGGGGAAGCCCAGCTTTCTGGCACCATGGCAATGACTGTGGTCACCAAAGAGAAGAACAAGAAAG taaacttcttaacttgaggtcatcacctcattcttattcctttaccacagCAGCCCAAATAGCCCATATGGAGATGTGATCGGCCTCCAGGTTGACTACTGGCTGGGCCATCCTGGAGAGCGGAGGAGAGAGGGTGATAAGAGGGATGCCACCTCAAAGAACACCTTTGAAAGTGTCTTCCGTTCAGTGCAGGTTTCTCGCCTGCCACATGCAGGAGAGGCACAGCTCTCTGGTACCATGACAATGACAGTGGTCACGAAGGAGAAGAACAAGAAAGgtaagacaggatgacacctaatgcaaattgcccatgccttacctctaagc #### Pacs1_ID875_19 --> 1 - 0 Original Alignment cCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagcCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc Alignment from CESAR cCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagcCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc Alignment from Spaln_aa2Genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagCCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc Alignment from Spaln_nt2Genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagCCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc Alignment from Pairagon CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagCCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc Alignment from Exonerate_protein2genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagCCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc Alignment from Exonerate_coding2genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagCCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc Alignment from GeneWise CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgtttctccattgtttgagtagaccaatatttctatcttggaaaatagCCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGTgtgagtactagcctccattgtatgaccctagcatcctagccgcttccttc #### Pacs1_ID884_10 --> 1 - 0 Original Alignment gCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcaggCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga Alignment from CESAR gCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcaggCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga Alignment from Spaln_aa2Genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcagGCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga Alignment from Spaln_nt2Genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcagGCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga Alignment from Pairagon GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcagGCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga Alignment from Exonerate_protein2genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcagGCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga Alignment from Exonerate_coding2genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcagGCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga Alignment from GeneWise GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggctaagctgcagtcactcctgacagcacttcatttgatttttcctcagGCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACAGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTTGGGAAAGACACCACTAGCCCTgtatgttgaacgatggtaaaaaggattaggaaaggaacctgcagtgcaga #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt #### Pank1_ID6984_5 --> 1 - 0 Original Alignment cTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATG------TGTGCACTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagcCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg Alignment from CESAR cTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCA------CTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagcCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg Alignment from Spaln_aa2Genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagCCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg Alignment from Spaln_nt2Genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTG------TGCACTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagCCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg Alignment from Pairagon CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGT------GTGCACTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagCCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg Alignment from Exonerate_protein2genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagCCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg Alignment from Exonerate_coding2genome CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGT------GCACTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagCCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg Alignment from GeneWise CTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGCCACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCA------CTGAATGAG gggattctctggggataactttgatactcttcatctcttcctttccttagCCTTTGCAACATGATGAGCAAAGAAAAGAGGGAGTCCTTCAGCAAGGAAGATCTTGCCCAGGCTACATTGGTTACCAGCACCAACAATATAGGCACCATTACTCGGATGTGCGCCCGTGCCCTGAATGAGgtatgtcacaaatccttgagatgtctacaattcatgcacttggggtttgg #### Papss2_ID6706_2 --> 0 - 1 Original Alignment GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAg ctcactaggaaagattatgtttgactaatgcccctccctgtctcccacagGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAggtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta Alignment from CESAR GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAg ctcactaggaaagattatgtttgactaatgcccctccctgtctcccacagGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAggtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta Alignment from Spaln_aa2Genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactaggaaagattatgtttgactaatgcccctccctgtctcccacagGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAGgtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta Alignment from Spaln_nt2Genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactaggaaagattatgtttgactaatgcccctccctgtctcccacagGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAGgtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta Alignment from Pairagon GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactaggaaagattatgtttgactaatgcccctccctgtctcccacagGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAGgtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta Alignment from Exonerate_protein2genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactaggaaagattatgtttgactaatgcccctccctgtctcccacagGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAGgtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta Alignment from Exonerate_coding2genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactaggaaagattatgtttgactaatgcccctccctgtctcccacagGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAGgtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta Alignment from GeneWise TCGGGGGTCAAGAAGCAGAAGACGGACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactaggaaagattatgtttgactAATGCCCCTCCCTGTCTCCCACAGGACCAGCAAAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGCAGGAACAAAAGAGGACAAGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTGTGGCTAACAGgtgagtgtattcaaacatatcacaagctctgaagagacactctttggcta #### Patl1_ID3316_4 --> 0 - 0 Original Alignment CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc Alignment from CESAR CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc Alignment from Spaln_aa2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc Alignment from Spaln_nt2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc Alignment from Pairagon CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc Alignment from Exonerate_protein2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc Alignment from Exonerate_coding2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc Alignment from GeneWise CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG cacttggtgcaccactattaacacagcattttcattattttttcctttagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGGTGGATCCGAAGTCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgggtcattgtatttttgcagagagcttttgtatttattttgttccc #### Patl1_ID3329_14 --> 0 - 2 Original Alignment ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGag ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAaggtaaggattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from CESAR ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGag ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAaggtaaggattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Spaln_aa2Genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAAGgtaaggattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Spaln_nt2Genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAAGgtaaggattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Pairagon ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAAGgtaaggattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Exonerate_protein2genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAAGgtaaggattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from Exonerate_coding2genome ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAAGgtaaggattgggcttttgtagagtgggagacactccccattgctgggatg Alignment from GeneWise ACCTATAGTTTACTCCTTGATGTGGAGGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCACAAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAG ggattaactggtatacatgttagcatgtccattttctcttggtctttcagACCTATAGTTTGCTCCTTGATTTGGAGGATTATGATCGACGGTATCTTCTGAGTCTAAAAGAGGAGCGACCTGCCCTCATGGATGAAAGAAAGCACAAGATATGTAGCATGTATGACAACCTAAGGGGCAAATTGCTGGGACAAGAAAGgtaaggattgggcttttgtagagtgggagacactccccattgctgggatg #### Pax2_ID9170_6 --> 2 - 0 Original Alignment atGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagatGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt Alignment from CESAR atGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagatGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt Alignment from Spaln_aa2Genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagATGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt Alignment from Spaln_nt2Genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagATGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt Alignment from Pairagon ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagATGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt Alignment from Exonerate_protein2genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagATGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt Alignment from Exonerate_coding2genome ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagATGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt Alignment from GeneWise ATGTGTCTGAGGGCTCTGTCCCTAATGGAGACTCCCAGAGTGGTGTGGACAGTTTGCGGAAGCACCTGCGAGCCGACACCTTCACCCAGCAGCAGCTGGAAGCTCTGGATCGAGTCTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCAGAACAG tcttttttggaccagttctcattagttgtcatgccctcccggacccacagATGTGTCTGAGGGCTCTATCCCTAATGGGGACTCCCAGAGTGGTGTGGATAGTTTGCAGAAGCACCTGCGAGCTGACACGTTCACCCAGCAGCAGCTAGAAGCACTGGATCGAGTTTTTGAGCGTCCTTCCTATCCCGATGTCTTCCAGGCATCAGAGCACATCAAATCGGAACAGgtaagtgattggactttctgtttaacttgaacattttaatgaaactgagt #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgaatgctgggctttacctctcgatgctgtggccacagTATTCACCTTATGCTTTCCATTTGTATTCCTGCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaagttgtgcccaggatggtccttgtacaggggggtcagtcccacacaa #### Pcnxl3_ID1187_6 --> 2 - 1 Original Alignment ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagttGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAggtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt Alignment from CESAR ttGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAg cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagttGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAggtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt Alignment from Spaln_aa2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagTTGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAGgtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt Alignment from Spaln_nt2Genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATG---CTCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagTTGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAGgtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt Alignment from Pairagon TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATG---CTCCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagTTGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAGgtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt Alignment from Exonerate_protein2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagTTGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAGgtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt Alignment from Exonerate_coding2genome TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCT---CCCGAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagTTGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAGgtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt Alignment from GeneWise TTGGAGACCTTCCCCAGACACCTCCAGGGGTTGTTCCAGACCCCTCTCTCCCCAGTACGGATTCTTCCGAGCGTTCTCCCATGGCTGGAGATGGTGTCCCCTGGGGTGGGAGCGGTGTGGCTGACACTCCCATGAGCCCTTTACTGAAAGGGAGCCTCAGCCAGGAGCTAAGCAAGAGCTTTCTGACCCTGACCCGGCCTGACCGGGCCCTAGTGAGGACCAGTAGTCGGCGGGAACAATGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCGGAGGGGCTCAGGTGACCCCATGCCCCAGAAAGCTGGCTCTTCGGATTCCTGCTTCAGTGGCACTGACAGGGAGACTCTGAGCAGCTTCAAGAGTGAGAAGACTAACTCTACACACCTCGACAGTCCCCCTGGTGGGCATGCTCCC---GAGGGCAGCGACACAGACCCTCCTTCTGAGGCTGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGACACACTTCGTTCCTTTGACACAGTCATTGGAGCAGGGACACCACCGGGCCAAACGGAGCCGCTCCTGGTTGTGCGGCCCAAGGACTTGGCCCTGCTTCGGCCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCGTACCCCAAGACGGCCCTTGCTTGAGGGCTCAGGCTTCTTTGAAGATGAAGATACCAGTGAAGGTAGTGAGCTGAGTCCAGCATCCAGTCTCCGGTCTCAGCGCCGCTATAGCACTGATAGCTCCTCGTCTACTTCTTGCTACTCCCCCGAGAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCGGGCCCCTCATGGGGCCGAAGAAGGAACTGCTGTGCCCCCTAAGCGACCCTATGGGACCCAGCGGACGCCCAGTACTGCCAGTGCCAAAACTCATGCCCGTGTGTTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTGGCGGGCTCCAAGGCTGAGCTGGAGGCCCAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGTGTTGCCTCCTGAAGCCCGGAGGGGACCCGCTGCCAACCAGCCTGGCTGGCGGGGGGAGCTGCAGGAGGAAGGTGCTGTAGGGGGAG cttttaatttctatgtgacctcttctcatgctcttcctcttcctccccagTTGGAGACCTTCCCCAGACACCGCCAGGGGTTGTTCCAGATCCCTCTCTTCCAAGTACAGATTCTTCAGAACGTTCCCCAATGGCTGGGGATGGGGTCCCCTGGGGTGGGAGTGGAGTGGCTGACACACCCATGAGCCCTTTGCTGAAAGGGAGCCTCAGCCAAGAGCTAAGCAAGACCTTTCTTACCCTGACCCAGCCTGACCAGGCACTAGTAAGAACCAGTAGTCGGCGGGAACGGTGTCGGGGAACTGGAGGCTACCAGCCCCTGGACCAGAGGGGCTCAGGTGACCCTATGCCCCAAAAAGCTGGCTCCTCAGATTCCTGCTTCAGTGGTACGGAAAGGGAGACTCTAAGCTGCTTCAAGAGTGAGAAGACCAACTCTACACACCTTGACAGCCCACCTGGTGGGCATGCCCCTCCCGAGGGTAGTGACACAGACCCTCCTTCTGAGGCAGAGCTGCCTGCCTCCCCAGATGCTGGGGTCCCCTCAGATGATGCACTTCGTTCCTTTGACACCATCATTGGAGCAGGGACACCACCTGGCCAAACAGAACCACTCTTGGTAGTGCAGCCTAAAGACTTGGCTCTACTTCCACCTAGCAAGCGGCGGCCCCCCATGCGAGGACATTCCCCACCTGGTCATACCCCAAGACGGTCCTTGCTTGAGGGTTCAGGGTTTTTTGAAGATGAAGATACCAGTGAAGGCAGTGAGCTGACTCCAGCATCCAGTCTCCGGTCCAAGCGCCGCTATAGCACTGATAGTTCCTCCTCCACTTCTTGCTACTCCCCTGAAAGCTCCCAGGGTGCAGCAGGGGGTCCTCGGAAGCGGCAGGCCCCTCATGGGGCTGAAGAAGGAACTGCTGTGCCCCCTAAACGACCCTATGGGACACAGCGGACTCCCAGCACTGCCAGTGCCAAAACTCACGCCCGTGTATTGAGCATGGATGGGGCAGGGGGTGATGTCTTACGGGCACCCCTCGCAGGTTCCAAAGCTGAGTTGGAGGCCAAGCCAGGAATGGAGCTGGCTGCTGGTGAGCCTGCTGGGTCACCTCCTGAGGCCCGGAGGGGACCTGCCACCAACCAGCCTGGCTGGCGGGGGGAGCTGCAAGAGCAAGGAGCTGTAGGTGGAGgtgagtgtctgctgcagcgtgttaacgagggatgcctggtgtaaagtgtt #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcaggGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTCTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcaggGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTCTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTCTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTCTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTCTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTCTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from Exonerate_coding2genome acataactgacaagataggaacataacttgacacccattcgttcctgcagggatcctggtatagagatgacagtgtttcagaaggttagttcctcacctcctgtacactgcagtttccagcgctctgtaataggctttaaccatgtgtcagtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG acataactgacaagataggaacataacttgacacccattcgttcctgcagGGATCCTGGTATAGAGATGACAGTGTTTCAGAAGGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGCTCTGTAATAGGCTTTAACCATGTGTCAgtaagcaggctccccttgttgctggcatcagagtctgccattggtgtggg #### Pcsk5_ID4237_30 --> 2 - 2 Original Alignment gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga atgacagcttttctctgccacaataccctgtccttttctcttgctttaaggtATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAgagtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag Alignment from CESAR gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga atgacagcttttctctgccacaataccctgtccttttctcttgctttaaggtATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAgagtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag Alignment from Spaln_aa2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccacaataccctgtccttttctcttgctttaagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAGAgtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag Alignment from Spaln_nt2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccacaataccctgtccttttctcttgctttaagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAGAgtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag Alignment from Pairagon GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccacaataccctgtccttttctcttgctttaagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAGAgtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag Alignment from Exonerate_protein2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccacaataccctgtccttttctcttgctttaagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAGAgtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag Alignment from Exonerate_coding2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccacaataccctgtccttttctcttgctttaagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAGAgtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag Alignment from GeneWise GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA atgacagcttttctctgccacaataccctgtccttttctcttgctttaagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACAAGTGGCAGTTGTGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGCCAGCAGTGCTTGAGCCAGCCAGACAATACCCTACTACTCCATGAGGGTAAGTGCTACCACAGTTGCCCAGAgtcagtcttcatccccagttacgccatactcctaccaagtctgcattcag #### Pcsk5_ID4239_28 --> 2 - 1 Original Alignment aaGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAg gcacccccactaatgtataacaattctttgccttctcctctgccttgcagagGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAggtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac Alignment from CESAR aaGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAg gcacccccactaatgtataacaattctttgccttctcctctgccttgcagagGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAggtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac Alignment from Spaln_aa2Genome AAGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAG gcacccccactaatgtataacaattctttgccttctcctctgccttgcagAGGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAGgtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac Alignment from Spaln_nt2Genome AAGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAG gcacccccactaatgtataacaattctttgccttctcctctgccttgcagAGGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAGgtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac Alignment from Pairagon AAGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAG gcacccccactaatgtataacaattctttgccttctcctctgccttgcagAGGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAGgtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac Alignment from Exonerate_protein2genome AAGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAG gcacccccactaatgtataacaattctttgccttctcctctgccttgcagAGGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAGgtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac Alignment from Exonerate_coding2genome AAGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAG gcacccccactaatgtataacaattctttgccttctcctctgccttgcagAGGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAGgtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac Alignment from GeneWise AAGCCGTGCCCACTGAAAAGCCATCTTTGGTGAGGAGTCTGCTGCAGGATCGACGAAAGTGGAAAGTTCAAATCAAAAGAG gcacccccactaatgtataacaattctttgccttctcctctgccttgcagAGGCTGTGCCTACTGAAAAGCCATCTTTGGTGAGAAGCCTATTACAGGATCAACGAAAATGGAAAGTTCAGATTAAAAGAGgtgagcgggaaacaggctaaaaccagcaaacacactacatcaatctgcac #### Pcsk5_ID4257_24 --> 2 - 1 Original Alignment gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctaggtGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGggtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca Alignment from CESAR gtGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGg ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctaggtGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGggtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca Alignment from Spaln_aa2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca Alignment from Spaln_nt2Genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca Alignment from Pairagon GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca Alignment from Exonerate_protein2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca Alignment from Exonerate_coding2genome GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca Alignment from GeneWise GTGAATTCCAGGATTCTGAGTATGAAGAATGCATGCCCTGTGAGGAAGGATGTCTGGGATGCACTGAGG ggcctccagtgtccatcaactatgcaatctctctcctcttcttcctctagGTGAATTCCAGGATTCTGAGTATGAAGACTGCATGCCCTGTGAGGAAGGATGTCTAGGATGCACTGAGGgtagggcatcatttgtataggagatgatgatggaaacctggtaagtgaca #### Pcsk5_ID4259_22 --> 1 - 1 Original Alignment gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttataggGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTggtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc Alignment from CESAR gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttataggGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTggtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc Alignment from Spaln_aa2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTGgtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc Alignment from Spaln_nt2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTGgtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc Alignment from Pairagon GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTGgtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc Alignment from Exonerate_protein2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTGgtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc Alignment from Exonerate_coding2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTGgtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc Alignment from GeneWise GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG ctgattaagaagtcctcctagtgaatttttgtttatatgctgctttatagGGTCTTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCATCCCTGCCATTATACTTGTCAAGGATGCCAAGGTAGTGGTCCTTCAAATTGCACTTCCTGCAAAGCTGgtgggcatacttgctacccatgctgtgatcttcctcacaaagaagcactc #### Pcsk5_ID4263_20 --> 1 - 1 Original Alignment aTGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATg cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagaTGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGggtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg Alignment from CESAR aTGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATg cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagaTGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGggtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg Alignment from Spaln_aa2Genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagATGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg Alignment from Spaln_nt2Genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagATGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg Alignment from Pairagon ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagATGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg Alignment from Exonerate_protein2genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagATGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg Alignment from Exonerate_coding2genome ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagATGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg Alignment from GeneWise ATGTGATAACAGCTGTTTGACATGCAATGGGCCAGGATTCAAGAACTGTTCCAGCTGCCCCAGTGGATATCTTTTAGACTTAGGAACGTGTCAGATGGGAGCCATCTGCAAGGATG cccaaaagcaataaagaggttcagcagtaattgttttcttattctgacagATGTTACAATAGCTGTCTTACATGCAATGGGCCAGGATTTAAGAATTGTTCCAGTTGCCCCAGTGAATACCTTTTAGACTTAGGAACATGTCAGATGGGAGCTGTCTGCAGGGAGGgtaggcacagcattatcagtgaagtttaacaatggcaatgtgagtcatcg #### Pcsk5_ID4265_18 --> 1 - 1 Original Alignment tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagtCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTggtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat Alignment from CESAR tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagtCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTggtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat Alignment from Spaln_aa2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagTCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTGgtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat Alignment from Spaln_nt2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagTCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTGgtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat Alignment from Pairagon TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagTCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTGgtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat Alignment from Exonerate_protein2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagTCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTGgtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat Alignment from Exonerate_coding2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagTCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTGgtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat Alignment from GeneWise TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG gtaatggttacctacacagtcttcgcataatttctgatgtttatttacagTCTTCAGGGATCCCGCTGCTCAGTTACCTGTGAAGATGGTCAGTTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCACTTCTGTGCTACCCGCTCTGgtgtgtatcatcctacacacctccatgaaacactgacaccctcatgaaat #### Pcsk5_ID4271_13 --> 1 - 1 Original Alignment gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagaCTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAggtaagtaaccactacaaatataagatcactagtggcataaaacaactgac Alignment from CESAR gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagaCTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAggtaagtaaccactacaaatataagatcactagtggcataaaacaactgac Alignment from Spaln_aa2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAGgtaagtaaccactacaaatataagatcactagtggcataaaacaactgac Alignment from Spaln_nt2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCT---TGTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAGgtaagtaaccactacaaatataagatcactagtggcataaaacaactgac Alignment from Pairagon GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAGgtaagtaaccactacaaatataagatcactagtggcataaaacaactgac Alignment from Exonerate_protein2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAGgtaagtaaccactacaaatataagatcactagtggcataaaacaactgac Alignment from Exonerate_coding2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAGgtaagtaaccactacaaatataagatcactagtggcataaaacaactgac Alignment from GeneWise GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG gatagctgacatgtaggagtagggccaatgcctgtgtgttttctaaacagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTATGATACGCCGTCTCAGCTGAGAAACTTTAAGACTCCAGgtaagtaaccactacaaatataagatcactagtggcataaaacaactgac #### Pcsk5_ID4277_12 --> 1 - 2 Original Alignment gACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACag aggggtataaccatgccctctgccaagctgaatttttgttcttttaacaggACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATaggtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac Alignment from CESAR gACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACag aggggtataaccatgccctctgccaagctgaatttttgttcttttaacaggACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATaggtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac Alignment from Spaln_aa2Genome GACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACAG aggggtataaccatgccctctgccaagctgaatttttgttcttttaacagGACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATAGgtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac Alignment from Spaln_nt2Genome GACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACAG aggggtataaccatgccctctgccaagctgaatttttgttcttttaacagGACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATAGgtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac Alignment from Pairagon GACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACAG aggggtataaccatgccctctgccaagctgaatttttgttcttttaacagGACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATAGgtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac Alignment from Exonerate_protein2genome GACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACAG aggggtataaccatgccctctgccaagctgaatttttgttcttttaacagGACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATAGgtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac Alignment from Exonerate_coding2genome GACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACAG aggggtataaccatgccctctgccaagctgaatttttgttcttttaacagGACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATAGgtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac Alignment from GeneWise GACCATTCGACCAAACAGTGCAGTGCGCTCCATCTACAAAGCCTCAGGCTGCTCGGATAATCCCAACCATCACGTCAATTACCTGGAGCATGTAGTTGTGCGTATTACCATCACACACCCACGGAGGGGAGACCTGGCCATCTATCTGACATCACCCTCAGGAACCAGATCCCAGCTCTTGGCCAACAG aggggtataaccatgccctctgccaagctgaatttttgttcttttaacagGACGATACAACCAAACAGTGCAGTACGTTCCATCTACAAAGCTTCAGGCTGCTCAGATAATCCCAACCATCATGTCAACTACCTGGAGCATGTAGTTGTTCGTATCACAATAACACATCCACAGAGGGGGGACCTGGCCATCTATCTGACATCACCCTCAGGTACCAGGTCACAGCTCTTGGCTAATAGgtaagtactcctaaacagggtgtgggccatcaaggcaagatgaaagtaac #### Pcsk5_ID4289_9 --> 0 - 2 Original Alignment ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCaagtaattcttgatgtctgcaatctatatctggggacacaactccttcctac Alignment from CESAR ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCaagtaattcttgatgtctgcaatctatatctggggacacaactccttcctac Alignment from Spaln_aa2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCAAgtaattcttgatgtctgcaatctatatctggggacacaactccttcctac Alignment from Spaln_nt2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCAAgtaattcttgatgtctgcaatctatatctggggacacaactccttcctac Alignment from Pairagon ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCAAgtaattcttgatgtctgcaatctatatctggggacacaactccttcctac Alignment from Exonerate_protein2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCAAgtaattcttgatgtctgcaatctatatctggggacacaactccttcctac Alignment from Exonerate_coding2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCAAgtaattcttgatgtctgcaatctatatctggggacacaactccttcctac Alignment from GeneWise ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA caacatagtgttggaagttctggccaggagctcgatcttgcttctgacagATCACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTAGCTTTAGAAGCCAAgtaattcttgatgtctgcaatctatatctggggacacaactccttcctac #### Pcsk5_ID4307_5 --> 0 - 2 Original Alignment GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACaa cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacagGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATaagtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg Alignment from CESAR GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACaa cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacagGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATaagtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg Alignment from Spaln_aa2Genome GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacagGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATAAgtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg Alignment from Spaln_nt2Genome ACGATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacAGGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATAAgtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg Alignment from Pairagon GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacagGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATAAgtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg Alignment from Exonerate_protein2genome GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacagGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATAAgtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg Alignment from Exonerate_coding2genome GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacagGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATAAgtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg Alignment from GeneWise GATGCTCTGGCAAGTTGCGATGTGAATGGGAATGACTTGGACCCGATGCCTCGTTATGATGCAAGCAATGAGAACAA cttgcacgattgcgtttcggaatgcatgtttgttttttgtttttaaacagGATGCTCTAGCAAGCTGTGATGTGAATGGGAATGACTTGGACCCAGCGCCTCGTTATGATGCAAGCAATGAGAATAAgtgagtttcaatgtcaggctgccatatgtgctgccatttgtgtgactggg #### Pcsk5_ID4309_4 --> 0 - 0 Original Alignment CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag Alignment from CESAR CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag Alignment from Spaln_aa2Genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag Alignment from Spaln_nt2Genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag Alignment from Pairagon CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag Alignment from Exonerate_protein2genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag Alignment from Exonerate_coding2genome CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag Alignment from GeneWise CACTGCAGTGACAACACCCATCCTTGCCAGTCAGACATGAATATCGAAGGAGCCTGGAAGAGAGGCTACACGGGGAAGAATATCGTGGTGACTATCCTGGATGACGGCATCGAGAGAACCCACCCAGATCTGATGCAAAACTAC cagccaaaagctattgagtaatccagggtaaactcttttgcaacatttagCATTGTAGTGACAACACCCATCCTTGCCAATCAGACATGAACATTGAAGGAGCCTGGAAGAGAGGCTACACAGGAAAGAATGTTGTGGTGACTATCCTGGATGATGGCATTGAGAGAACCCACCCAGATCTGATGCAAAACTATgtgaagattttgggtgggcagacacaggtccccactctttggagtggaag #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg #### Pcx_ID562_11 --> 0 - 1 Original Alignment ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTggtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca Alignment from CESAR ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCg aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTggtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca Alignment from Spaln_aa2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca Alignment from Spaln_nt2Genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca Alignment from Pairagon ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca Alignment from Exonerate_protein2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca Alignment from Exonerate_coding2genome ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca Alignment from GeneWise ACCAACATCCCCTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACAGTGGACACCCAGTTCATCGATGAGAACCCTGAGCTGTTCCAGCTTCGGCCTGCACAGAACCGGGCCCAGAAGTTGCTACATTACCTCG aaacaatgtagcaatgtagccagagggttctctgttccgaccctatccagAGCAACATCCCTTTCCTGCAGAATGTTCTCAACAACCAGCAGTTCCTGGCAGGCACTGTGGACACTCAGTTCATTGATGAGAACCCTGAGTTGTTCCAATTGAGGCCTGCACAGAACCGGGCCCAGAAATTGCTACATTACCTTGgtcaggctgtgtggcccttctctttcctgcagatttgtgcatatttccca #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctggaagcagccgtcactgtgttttttgttgttttgcaggaCATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAggtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctggaagcagccgtcactgtgttttttgttgttttgcaggaCATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAggtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt #### Pdcd11_ID10110_4 --> 0 - 0 Original Alignment GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTA------ATGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCTC---------ATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta Alignment from CESAR GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTA------ATGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCTC---------ATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta Alignment from Spaln_aa2Genome GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTA------ATGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCTC---------ATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta Alignment from Spaln_nt2Genome GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGA-G aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTAA------TGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCTCATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta Alignment from Pairagon GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTAA------TGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCT---------CATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta Alignment from Exonerate_protein2genome GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGG aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTA------ATGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCTCATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta Alignment from Exonerate_coding2genome GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGG aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTA------ATGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCTCATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta Alignment from GeneWise GACCTGCTCCGCCTGCCTGAGCTCTTCTCCCCTGGAATGTTGGTGAGGTGTGTGGTGAGCAGCCTGGATGTCACAGAGAGTGGCAAGAAGAGCGTCAAGCTTTCTGTGAACCCCAAACGTGTCAACAAAGTGCTGAGTGCTGATGCCCTGAGGCCTGGCATG aagctctatcctgagaaatcactgatagtgatgtcctctgtgtctcacagGACCTGCCCCGCTTGCCTGAACTTTTCTCCCCAGGGATGTTGGTGAGGTGTGTGGTA------ATGGATGTCACAGAGTGTGGCAAGAAGAGTGTTAAACTTTCTGTGAACCCCAACTGTGTTAACAGAGTGCTAAGTGCCGATGCCCTC---------ATGgtaagcatctggagtctgttgttgcaccctgccctattgaatacccttta #### Pdcd11_ID10113_7 --> 0 - 0 Original Alignment GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat Alignment from CESAR GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat Alignment from Spaln_aa2Genome GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat Alignment from Spaln_nt2Genome GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat Alignment from Pairagon GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat Alignment from Exonerate_protein2genome GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat Alignment from Exonerate_coding2genome GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat Alignment from GeneWise GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG aagaccctttagatgatttattatgtcctgcactttggatctctgcgcagGTGACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTCTGGTTGACTTCATGCATTCAGAACCCAAGAAAATGGGATCCTATTCTTCGAATCAAATGgtgatcaatctcttgctagtttgccttggccaccattcgtgtctaagtat #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag Alignment from Exonerate_coding2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacaccctgtagtctcttatcccctgacttctgtagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgtaagtacagcggattcttttgataaacacattagctgtcagcttgtgag #### Pdcd11_ID10121_15 --> 0 - 0 Original Alignment CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg Alignment from CESAR CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg Alignment from Spaln_aa2Genome CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg Alignment from Spaln_nt2Genome CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg Alignment from Pairagon CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg Alignment from Exonerate_protein2genome CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg Alignment from Exonerate_coding2genome CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg Alignment from GeneWise CTTCTTTGCAGGAAACCAGCTTTGGTCTCCACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCCGGAATGTTGCTCATTGGTTTTGTGAAGTGCATCAAGGAGTATGGCGTGTTCGTCCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCCAAAACT ctgttacctttgctgttatatattttgcgtgtgtgtgccatcccatgaagCTTCTTTGCAGGAAACCAGCTTTGGTGTCAACAGTAGAAGGTGGCCAGGACCCCAAGAGCCTCTCAGAAATCCAGCCTGGAATGCTGCTCATTGGTTTTGTCAAGTGCATCAAGGAGTATGGTGTGTTCGTTCAGTTCCCCTCAGGTCTCAGTGGACTGTCCCCTAAAACTgtaaagagttctacagttaggcccttgtggagaggccctggacctatggg #### Pdcd11_ID10122_16 --> 0 - 1 Original Alignment ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAg tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTGTGG---TGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAggtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac Alignment from CESAR ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAg tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTGTGG---TGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAggtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac Alignment from Spaln_aa2Genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTGTGG---TGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAGgtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac Alignment from Spaln_nt2Genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTGTG---GTGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAGgtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac Alignment from Pairagon ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTGTG---GTGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAGgtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac Alignment from Exonerate_protein2genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTG---TGGTGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAGgtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac Alignment from Exonerate_coding2genome ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTG---TGGTGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAGgtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac Alignment from GeneWise ATCATGAGTGACAAGTTCGTAACCACTCCAAGTGAACACTTTGTGGAGGGTCAGACAGTCGTTGCTAAGGTGACCAATGTGGATGAATCGAAGCAGAGGATGCTGCTGTCTCTGCGGCTGTCAGACTGCAGTCTGGGGGATTCGGCCAGCACCAGCTTCCTCCTCCTGTGCCAGTGCCTGGAAGAGCTGCAGGGCATTCGCAGCCTCATGAGCAACCAAG tgttggacatgaccccttcctacctccccaaatgcattttgtcccggcagATCATGAGTGACAGGTTTGTAACTACTCCAAGTGAACATTTTGTGGAAGGTCAGACAGTAGTTGCAAAGGTGACTAATGTGGATGAATCAAAGGAGAGGATGTTGTTGTCATTGCGGCTGTCACACTGCAGTTTGGGTGACTCAGCAAGTACCAGCTTCCTTCTTCTG---TGGTGTCTGGAAGAGCTACAGGGCATTCGCAGTCTCATGAGCAACCAAGgtgagttttgcttggagatgatagagggtagggggtgaggtctttgggac #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTggtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAg ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTggtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from Exonerate_coding2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCTTTCTTATGTCTGTCACTCATAG ggccccatgtttgctaacaaatctgggatgtcttctctgcttggttctagGTTCTCAAACACCCAGATAGAAAGTTCCAAGTAGGGCAGGCCATTGAGGCCACTGTTGTTGACCCAGAAGTCCCCAGGGCTTTCTTATGTCTGTCACTCATTGgtaagtaataatttggtgcgtagtcagggagagactgtggtgggagtttt #### Pdcd11_ID10131_25 --> 1 - 2 Original Alignment aTGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCag ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagaGGTTACATTCTCCCCACTGCGCATCGTGTGCTAGCACTTTCACTACGGTCATCTaggtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga Alignment from CESAR aTGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCag ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagaGGTTACATTCTCCCCACTGCGCATCGTGTGCTAGCACTTTCACTACGGTCATCTaggtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga Alignment from Spaln_aa2Genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagAGGTTACATTCTCCCCACTGCGCATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga Alignment from Spaln_nt2Genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagAGGTTACATTCTCCCCACTGCGCATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga Alignment from Pairagon ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagAGGTTACATTCTCCCCACTGCGCATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga Alignment from Exonerate_protein2genome ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagAGGTTACATTCTCCCCACTGCGCATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga Alignment from Exonerate_coding2genome ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagaggttacattctccccactgcgcatcgtgtgctagcactttcactacggtcatctaggtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga Alignment from GeneWise ATGTTACATCCTGTCCACAGCACACCGTGTGCTGGCTTTGTCACTCCGGTCATCCAG ggttcgatccacttgcacaacaaattgaaatttgctttttctttctttagAGGTTACATTCTCCCCACTGCGCATCGTGTGCTAGCACTTTCACTACGGTCATCTAGgtgaccgtttccagtgtagaggggagagagtacaacttatgagatgtaga #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtgaggccagaacaacctcacgatgtgggtttgttctattttagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGATTCTCTCACCCCAGCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtaaagcgtgttccaagccactgtatgtctcctaggaacacttattacca #### Pdcd1lg2_ID6281_3 --> 2 - 1 Original Alignment ctTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGa tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagctTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGagtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag Alignment from CESAR ctTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGa tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagctTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGagtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag Alignment from Spaln_aa2Genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagCTTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGAgtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag Alignment from Spaln_nt2Genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagCTTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGAgtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag Alignment from Pairagon CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagCTTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGAgtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag Alignment from Exonerate_protein2genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagCTTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGAgtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag Alignment from Exonerate_coding2genome CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagCTTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGAgtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag Alignment from GeneWise CTTCTTACATGAGGATAGACACTAGGATCCTGGAGGTTCCAGGTACAGGGGAGGTGCAGCTTACCTGCCAGGCTAGAGGTTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCTGCCAACACCAGCCACATCAGGACCCCCGAAGGCCTCTACCAGGTCACCAGTGTTCTGCGCCTCAAGCCTCAGCCTAGCAGAAACTTCAGCTGCATGTTCTGGAATGCTCACATGAAGGAGCTGACTTCAGCCATCATTGACCCTCTGA tacagcattccaaaacaaacacttctttctctgtgctgttttggtcctagCTTCTTACATGAGGATAGACACCAGGAGACTGGAGGTTCCAGGCACAGGGGAGGTGCAGCTTACCTGCCAGTCTAGAGGCTATCCCCTAGCAGAAGTGTCCTGGCAAAATGTCAGTGTTCCAGCCAACACCAGTCACATCAGGACCCCTGAGGGACTCTACCAGGTTGCCAGTGTTCTGCGCCTCAAACCACAGCCTAGCAGAAACTTTAGTTCCATGTTCTGGAATGCTCACATGAAAGAGCTGACTTCAGCTATAATTGATCCTCTGAgtaagtgtgcttagtattacctaatcttatcaattcaaactcacatggag #### Pdcd4_ID11395_2 --> 2 - 1 Original Alignment acCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAg tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagacCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAggtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga Alignment from CESAR acCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAg tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagacCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAggtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga Alignment from Spaln_aa2Genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagACCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga Alignment from Spaln_nt2Genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagACCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga Alignment from Pairagon ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagACCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga Alignment from Exonerate_protein2genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagACCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga Alignment from Exonerate_coding2genome ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagACCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga Alignment from GeneWise ACCCTGACAATTTAAGCGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGCACTGAAGAAATAAAGAATGAAATAAATGGAAATTGGATTTCCGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGACGACTGCGGAAAAATTCATCCCGGGACTCTGGCCGAGGAGACTCAGTCAGTGACAATGGAAGTGAAGCGGTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGGCTGCCAAAGAAAG tgtccagtacaagcctaaaaagtgtcaatgagcttgctctcggtccccagACCCTGATAATTTCAGTGACTCCCTCTTTTCTGGTGATGAGGAAAATGCCGGCACTGAAGAAATCAAGACTGAAATAAACGGAAATTGGCTCTCTGCATCTACTATTAATGAAGCTAGAATCAATGCAAAAGCCAAAAGGCGCTTACGAAAAAATTCATCTCGGGATTCGGGCCGCGGAGACTCAGTCAGTGACAATGGAAGTGAAGCACTTAGAAGTGGAGTTGCTGTGCCCACCAGTCCAAAAGGAAGGTTGCTAGATAGGCGGTCCAGATCTGGGAAAGGAAGGGGATTGCCAAAGAAAGgtaagcgtggatgtggagagacaactgcagaagtccctatgctctcaaga #### Pdcd4_ID11398_5 --> 0 - 0 Original Alignment GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc Alignment from CESAR GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc Alignment from Spaln_aa2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc Alignment from Spaln_nt2Genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc Alignment from Pairagon GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc Alignment from Exonerate_protein2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc Alignment from Exonerate_coding2genome GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc Alignment from GeneWise GAGATGTTAAGAGACTTAAACCTTGGGGAGATGAAGAGTGGCGTGCCGGTGTTGGCAGTGTCCTTAGCCTTGGAGGGGAAGGCCAGCCACCGGGAGATGACATCCAAGCTGCTTTCTGACCTTTGCGGGACGGTGATGAGCACAAATGACGTGGAAAAGTCATTTGACAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACTCCTAGGGCACCGCAG gtttaattgggctggagaaagttagtcatactgtccactgtaccctgcagGAGATGTTAAGAGACTTAAACCTTGGTGAGATGAAAAGTGGTGTACCAGTGTTGGCAGTATCTTTAGCCTTGGAGGGGAAGGCCAGCCACCAGGAGATGACAACCAAGCTGCTTTCTGACCTTTGCGGGACAGTGATGAGCACAAACGACGTGGAAAAGTCATTCGATAAGTTGCTGAAGGATCTCCCTGAGCTAGCCTTGGACACCCCTAGGGCACCCCAGgtttgcaccttattctcttcagtatttagatactactaagcttgtccagc #### Pdcd4_ID11399_6 --> 0 - 2 Original Alignment TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTcg gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTcggtattccaggctttcctctttaagtctccctctcagagttctagttgtca Alignment from CESAR TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTcg gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTcggtattccaggctttcctctttaagtctccctctcagagttctagttgtca Alignment from Spaln_aa2Genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtattccaggctttcctctttaagtctccctctcagagttctagttgtca Alignment from Spaln_nt2Genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtattccaggctttcctctttaagtctccctctcagagttctagttgtca Alignment from Pairagon TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtattccaggctttcctctttaagtctccctctcagagttctagttgtca Alignment from Exonerate_protein2genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtattccaggctttcctctttaagtctccctctcagagttctagttgtca Alignment from Exonerate_coding2genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtattccaggctttcctctttaagtctccctctcagagttctagttgtca Alignment from GeneWise TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG gaagattcacattaattcttctataaaaagtcactgttcttccacttcagTTGGTAGGCCAGTTCATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATTGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtattccaggctttcctctttaagtctccctctcagagttctagttgtca #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG caaacaagcaatgggttcacaacaataacctctccactcttgccttgcagGTCTTCTCAAAATACCTCAGCTTTGTTGCCGTTGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGCGGAGCCAGgtcagtcaatagctaccagaagtctcccctttccaccccaaaacattatc #### Pde6c_ID7538_8 --> 0 - 0 Original Alignment ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from CESAR ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Spaln_aa2Genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Spaln_nt2Genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Pairagon ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Exonerate_protein2genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Exonerate_coding2genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from GeneWise ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG tggttgtaaccttatcatgtctcagtatagttttcttctcctttattcagATCTGTAACATGCTCAATGCCCCCGCAGATCAATACTTCACATTTCAGgtgagccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac #### Pde6c_ID7540_10 --> 0 - 0 Original Alignment ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat Alignment from CESAR ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat Alignment from Spaln_aa2Genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat Alignment from Spaln_nt2Genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat Alignment from Pairagon ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat Alignment from Exonerate_protein2genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat Alignment from Exonerate_coding2genome ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat Alignment from GeneWise ACTTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACCGATACCTATGAGCGAGTGAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTTATGAACCTCACAAAAGCCACCCCGGATGAAATCAGCTCTATTCTG tgtgttactgtcatatctgcaggtttggagctctgctgttctgcccgcagACCTTAACCCAGTTTCTTGGATGGTCTCTTTTAAACACTGATACCTATGAGCGAGTAAACAAGCTGGAAAGCAGAAAGGACATTGCTCAGGAAATGGTCATGAACCTCACAAAAGCCACCCCACATGAGATCAGCTCCATTCTGgtaagtaggagatgcattgtgtcatcctcaggagggaaataacccccgat #### Pde6c_ID7545_15 --> 1 - 0 Original Alignment gTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcaggTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt Alignment from CESAR gTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcaggTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt Alignment from Spaln_aa2Genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt Alignment from Spaln_nt2Genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt Alignment from Pairagon GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt Alignment from Exonerate_protein2genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt Alignment from Exonerate_coding2genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt Alignment from GeneWise GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcggatttctgtgaatgaagcccgcggtttttcctgtccccgcagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATCTTAGAACGACATCACCTTGAATATAGCAAGACTCTCTTACGAGATGAGgtaagagggatatagtgcagcagctggacctaactttaacacaatttttt #### Pde6c_ID7548_18 --> 1 - 0 Original Alignment gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctataggGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa Alignment from CESAR gGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctataggGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa Alignment from Spaln_aa2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctatagGGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa Alignment from Spaln_nt2Genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctatagGGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa Alignment from Pairagon GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctatagGGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa Alignment from Exonerate_protein2genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctatagGGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa Alignment from Exonerate_coding2genome GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctatagGGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa Alignment from GeneWise GGCCATGATGATGACTGCCTGTGACCTGTCTGCCATCACCAAGCCCTGGGAGGTGCAGAGTCAG ttttttgcctttaacattcattagtaagtccttccccactctctctatagGGCCATAATGATGACTGCCTGTGACCTATCTGCCATTACCAAACCATGGGAGGTGCAAAGTCAGgtaagtcttacagtatgtcttcccaagcctatcatacctgccagcttcaa #### Pdlim1_ID7884_5 --> 1 - 1 Original Alignment cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg accaggacttttcactgtcatcctcattattctttgacttcttcccttagtGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAggttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat Alignment from CESAR cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg accaggacttttcactgtcatcctcattattctttgacttcttcccttagtGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAggttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat Alignment from Spaln_aa2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactgtcatcctcattattctttgacttcttcccttagTGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat Alignment from Spaln_nt2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactgtcatcctcattattctttgacttcttcccttagTGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACA---------AGGAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat Alignment from Pairagon CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactgtcatcctcattattctttgacttcttcccttagTGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACA---------AGGAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat Alignment from Exonerate_protein2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactgtcatcctcattattctttgacttcttcccttagTGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat Alignment from Exonerate_coding2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactgtcatcctcattattctttgacttcttcccttagTGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat Alignment from GeneWise CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactgtcatcctcattattctttgacttcttcccttagTGTAGTTCAACCACATCCGTCAGACAGCCTTATCATTGACAAGGAATCCGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACGTCATTTCTGGTTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgttagttaatggtagataaaatcagcctgtccagaaccaaaaaccaacat #### Peli3_ID758_4 --> 0 - 0 Original Alignment ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg Alignment from CESAR ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg Alignment from Spaln_aa2Genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg Alignment from Spaln_nt2Genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg Alignment from Pairagon ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg Alignment from Exonerate_protein2genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg Alignment from Exonerate_coding2genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg Alignment from GeneWise ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgtgcattttctgcttccttccagATTGGCCACTCTACTGAAACTATGATTGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCTTGCAGAATTCTTTGTGACCGGCGGCCACCCTATACTGCCCGAATCTATACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtactggatggccctctatgctgcgagcacatcaacaaacagctgatggg #### Peli3_ID759_3 --> 0 - 0 Original Alignment GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg Alignment from CESAR GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg Alignment from Spaln_aa2Genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg Alignment from Spaln_nt2Genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg Alignment from Pairagon GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg Alignment from Exonerate_protein2genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg Alignment from Exonerate_coding2genome GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg Alignment from GeneWise GCCCTGAGTAACCGAGGCCAGCACAGCATCTCATTCACACTGTCCCGGAGTCACTCAGTCATAGTGGAGTACACACATGACAGCGACAAAGACATGTTCCAG tttcagaaattctcttgttgtctcagaattttgttccatcccaaccccagGCCCTAAGTAACAGGGGCCAGCACAGCATCTCATTCACACTGTCCCGAAGTCATGCAGTCATAGTGGAGTTCGCGCATGACAGTGACAAGGACATGTTTCAAgtgagttcaccgacatgccatgagatccggagttgttgttcaggaccagg #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGA---CGTCAACTGCTTGCCTGATATTGTCTTCCCCAT------TGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGA---CGTCAACTGCTTGCCTGATATTGTCTTCCCCAT------TGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagctCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagctCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG caaacagtaatatgagcacacctaaagcataagctctgttttccccacagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCTGGATTTCTTGCATATGACACTGTAAGGgtaagttggaaagcagagggttgtttgggaatggctctgggtgagtactt #### Pi4k2a_ID8401_4 --> 0 - 1 Original Alignment GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGT---TTTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTg gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTggtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag Alignment from CESAR GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTT---GAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTg gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTggtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag Alignment from Spaln_aa2Genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTT---GAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTGgtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag Alignment from Spaln_nt2Genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTT---TTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTGgtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag Alignment from Pairagon GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTT---TTGAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTGgtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag Alignment from Exonerate_protein2genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTT---GAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTGgtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag Alignment from Exonerate_coding2genome GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTT---GAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTGgtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag Alignment from GeneWise GTCGGGTCATTCCAGCTCTTCGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTT---GAAGCAGAACCTCTCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAGCGGTTGGTGGTCCTGGACTACATCATCCGCAACACTG gtccggaatcatgccacagagatgcttctcttgcctgcttctatctgcagGTTGGATCATTCCAGCTTTTTGTTGAAGGCTACAAAGATGCAGACTATTGGCTGCGGCGTTTTGTTGAAGCAGAACCGCCCCCTGAGAACACGAACCGACAGCTGCTATTGCAGTTTGAACGGTTGGTCATTCTGGACTACATAATCCGCAACACTGgtgagtacaagtgtgcttccctgctttgtaccttatccctgctgatccag #### Pik3ap1_ID8154_15 --> 2 - 0 Original Alignment gcAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccaggtAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt Alignment from CESAR gcAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccaggtAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt Alignment from Spaln_aa2Genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccagGTAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt Alignment from Spaln_nt2Genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccagGTAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt Alignment from Pairagon GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccagGTAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt Alignment from Exonerate_protein2genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccagGTAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt Alignment from Exonerate_coding2genome GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccagGTAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt Alignment from GeneWise GCAGCACGAGTAACCGGTCGAGCACACGGAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGCGACAACGAG tgggctggactttcatacctcactcccttctgcccctctgttccttccagGTAGCACAAGTAATCGGTCAAGTACACGCAGCCTCCTCAGTGTGAGCAGTGGAATGGAGGGTGACAATGATgtaagagacagcactccctgtctgtctgtctgatcttgggggtaactggt #### Pik3ap1_ID8156_13 --> 0 - 1 Original Alignment GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAg aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgatagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAggtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc Alignment from CESAR GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAg aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgatagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAggtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc Alignment from Spaln_aa2Genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgatagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc Alignment from Spaln_nt2Genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgatagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc Alignment from Pairagon GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgatagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc Alignment from Exonerate_protein2genome GCAGGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgATAGGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc Alignment from Exonerate_coding2genome GCAGGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgATAGGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc Alignment from GeneWise GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagatcatcaatttgtgtgatactgaggtaaccttttcttgacttgatagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaaagaccacaggataccatgctgtgatccctcattcctaaatggtcc #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCaagtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCaagtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgtagtgtttgtgtgctctcaatagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAGGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTCGGTCATGTAGCACTGCGGCTGGTACCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtaggtgcagaaaggaaaatggagcaaacacagggcgagtaataatctat #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACag ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATaggtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCC------AATCCTGATCCTGATGGCTCTCAGAACag ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATaggtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAAT------CCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTG---GTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTG---GTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCC------AATCCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCC------AATCCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggtggacagcagtctgcttttgactcaccttctgtttgccttccccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATGTAGTTGCCTTCATTCTGCGCCAGgtattagaacccagggtgtgggcccaacactgagacaacaaggactatct #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtacgccccccccccccccccccagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtcttggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTACGCCCCCCCCCCCCCCCCCCAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTACGCCCCCCCCCCCCCCCCCCAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTACGCCCCCCCCCCCCCCCCCCAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGA tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAgaagaggtacgccccccccccccccccccag------GTTGATGTCTATGTCATGA Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGA GAGAAGGTGGATGTCTACGTCATGA tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAgaagaggtacgccccccccccccccccccag------GTTGATGTCTATGTCATGA Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtacgccccccccccccccccccagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacaggCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacaggCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Exonerate_protein2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from Exonerate_coding2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG cgcaacttgtcttctgcgtggattggagctcttgtcatttctggggacagGCACTGGCAGGACTCTGACTACTTGATTGTCTATGTAACTGGCCGGCCAGATATGCAAAAACACCGTGTAGTGGCCTGGTTATCACAACACACCTTCCCCCATGGTGTTGACTCGTTCTGTGATGGCCTCATGCATGACCCATTGCGCCAGAAAGCCATGTTTCTGCAGAGCCTGGTCCAAGAGgtacgttgacttgggtagggcctatcctgcttgggcctatcctatccggt #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggagcagcctatcccttgacttattgtacctctgttctcacagATATTTAAGTATATCAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtacgtatagctgtatcattgtagatcactcatttttcagatcccagcat #### Pkd2l1_ID8964_4 --> 0 - 2 Original Alignment TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAgc cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAgtgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct Alignment from CESAR TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAgc cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAgtgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct Alignment from Spaln_aa2Genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct Alignment from Spaln_nt2Genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct Alignment from Pairagon TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct Alignment from Exonerate_protein2genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct Alignment from Exonerate_coding2genome TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct Alignment from GeneWise TTTGCTCAGGGCCCACTCCTGGACAGTTTGTACTGGACAAAGTGGTACAACAACCAGAGCCTGGGGCGTGGCTCCCACTCCTTCATCTACTATGAGAACCTGCTCCTGGGAGCCCCAAGGTTGCGGCAGCTGCGCGTGCGCAATGACTCCTGTGTGGTTCATGAAGACTTCCGGGAGGACATTTTGAACTGTTATGATGTGTACTCGCCGGACAAAGAAGATCAGCTCCCCTTTGGACCTCAGAACGGCACAGC cagccattcaacaggaaactggaccagacttccattctttttttttacagTTTGCTCAGGGCCCACTTCTGGACAGCTTGTACTGGACAAAGTGGTACAACAATCAAAGCCTGGGACGTGGCTCCCACTCCTTCATCTACTATGAGAACCGGCTCCTGGGAGCTCCAAGGTTGCGGCAGTTGCGTGTACGAAATGACTCCTGTGTGGTCCATGAAGACTTTCGGAAGGACATTCTAAACTGTTACGATGTGTATTTACCAGACAAAGAGGATCACTTCCCCTTTGGACCTCAGATTGGTACAGTgtgagtgagccttacctaagatttcctaagaaccacctctggccttgcct #### Pkd2l1_ID8965_3 --> 2 - 0 Original Alignment tgACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagtgACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca Alignment from CESAR tgACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagtgACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca Alignment from Spaln_aa2Genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagTGACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca Alignment from Spaln_nt2Genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagTGACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca Alignment from Pairagon TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagTGACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca Alignment from Exonerate_protein2genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagTGACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca Alignment from Exonerate_coding2genome TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagTGACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca Alignment from GeneWise TGACCTACGGAATGACAAGTTCTAGTGCCTATTACTACACCAAAGTGATGTCTGAATTGTTCCTACACACCCCATCCGACTCTGGAGTCTCCTTCCAAACCATCAGCAGCATGTCAGACTTCTGGGAT acccagtcttgagaggtggaccttgggaattattattttcttttacctagTGACGTATGGAATGACAAGTTCTAGCTCTTATTATTATACCCAAGCAATGTCTGAATTGTTCCTCCATGCCCCATCTGATTCTGGAGTCTCTTTCCAAACCATGAGCAGCATGTTTGACTTCTGGGATgtaaatatggatagcactgctttaatcccatcctcaccttcatttctaca #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gactccctttacccaatgtctgagtctctgagcttctgttatttgtataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTGTATGGCCACTGGgtgtaattgcactgagtcagtgggtgcagggaaatagcttagcattggtgcc Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gactccctttacccaatgtctgagtctctgagcttctgttatttgtataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAgtgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcctcattttg Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcattggtgcc Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcattggtgcc Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcattggtgcc Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcattggtgcc Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcattggtgcc Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gactccctttacccaatgtctgagtctctgagcttctgttatttgtatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtaattgcactgagtcagtgggtgcagggaaatagcttagcattggtgcc #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagaGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagaGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG tttgtggcaatttgtggcaatcagagaggttcccttttaacctctcgcagAGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGGGAAGCCCAGGGAGATGTGGAAACCAAACGGAAGCTGGAACATCTACGACAGgtaagagataggtgtggggcatgtgacattgagggcaaggactgacatcc #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG tacaacagacccctcccattaacttccaccctgcctgcctctccctgtagGTGATTCCAGGGCAGTTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCCTTTGACTTCCCCAAGgtaagatgcctaggggtggctgatacaccaagactacattctgatagcag #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag #### Plcb3_ID1917_14 --> 2 - 0 Original Alignment ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcaggcCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg Alignment from CESAR ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcaggcCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg Alignment from Spaln_aa2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcagGCCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg Alignment from Spaln_nt2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcagGCCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg Alignment from Pairagon GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcagGCCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg Alignment from Exonerate_protein2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcagGCCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg Alignment from Exonerate_coding2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcagGCCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg Alignment from GeneWise GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG aatcagtacaagcatgtggttctgacatttgtttttctgttttccggcagGCCTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTGGAGAAGACCAGCTTGGAGCCTCAGAAGTCTCTAGGTGAGGAAAGCCTTAGCCGGGAACCAAATGTGCCCATGCCAGACCGTGACCGTGACGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAGCCCACTACAGACGAGgtatgaaccaacaaaaaagtgtctgctgcgtgatagcctcagcaattgtg #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG attggccctagacccctgcagagcggtgacaatgcgaccaacgattccagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTTATTGACCCTCTTGACAAATACCCAgtgagtgaaagtttggactggatccaggtgtatgaaggtgaggggggctc #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGaa tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagaTACACAAAGCTGAAGCTGCAGGTCAATCAGGACGGGCGGATTCCAGTCAAGaagtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from CESAR aTACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGaa tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagaTACACAAAGCTGAAGCTGCAGGTCAATCAGGACGGGCGGATTCCAGTCAAGaagtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Pairagon ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Exonerate_protein2genome tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagatacacaaagctgaagctgcaggtcaatcaggacgggcggattccagtcaagaagtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from Exonerate_coding2genome tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagatacacaaagctgaagctgcaggtcaatcaggacgggcggattccagtcaagaagtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga Alignment from GeneWise ATACACGAAGCTGAAGCTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaagacccaaggacccctttgctttgctgtaccctagATACACAAAGCTGAAGCTGCAGGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtgagctcccatgccccgtagcatcttccctgctgccctgacaccggtga #### Plce1_ID7630_15 --> 1 - 0 Original Alignment gTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccaggTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc Alignment from CESAR gTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccaggTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc Alignment from Spaln_aa2Genome GTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccagGTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc Alignment from Spaln_nt2Genome GTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccagGTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc Alignment from Pairagon GTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccagGTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc Alignment from Exonerate_protein2genome GTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccagGTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc Alignment from Exonerate_coding2genome GTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccagGTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc Alignment from GeneWise GTTTCTGATGGATAAAGACAATTTCGCCTCAAAAAATGATGAGTCACGGGAGAACAAGAAAGAACTGCAGCTACCCCTCTCCTACTATTATATAGAATCTTCACACAACACCTACCTCACCGGCCATCAGCTCAAGGGGGAGTCCTCTGTGGAGCTCTATAGCCAG tcactcaagagtatatgttgtccaggttactgcccttctccatccaccagGTTTCTAATGGATAAAGACAATTTTGCATCAAAAAATGATGAGTTGAGGGAGAACAAGAAACAATTGCAGCTACCCCTTTCATACTATTATATTGAATCTTCACACAACACTTATCTGACTGGTCATCAGCTCAAGGGGGAGTCCTCTGTCGAGCTCTATAGTCAGgtaagaagaatcacctgctgttttctccgtgttcctgtttgtttgttgtc #### Plce1_ID7637_20 --> 2 - 0 Original Alignment acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagacAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc Alignment from CESAR acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagacAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc Alignment from Spaln_aa2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc Alignment from Spaln_nt2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc Alignment from Pairagon ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc Alignment from Exonerate_protein2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc Alignment from Exonerate_coding2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc Alignment from GeneWise ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaactctcttgtgcaaccctcacagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtataaagttgatagataaatgtgaggatgc #### Plekhs1_ID12101_6 --> 0 - 0 Original Alignment GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact Alignment from CESAR GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact Alignment from Spaln_aa2Genome GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact Alignment from Spaln_nt2Genome GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact Alignment from Pairagon GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact Alignment from Exonerate_protein2genome GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact Alignment from Exonerate_coding2genome GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact Alignment from GeneWise GAGAAGCTTTCCCTGGGTGACAGAAGGCCAGTTTCCGACCCCAGTCCTTTCTTGGGCCTCTGCAGCATACCCGAGGGTATCAGACTTGCATCACCGAGGGCCAGTCTTCCAGAG tagggtaatgattgcactatagttatagtgtctgtgttttcccatctcagGAGAAGCTTTCCCTGAGTGACAGAAGGCCAGTTTCTGACCCTATTCCTTTTTTAGGTCTCTGCAGCATTCCTGAGGATATCAGACTTGCACCTCCTAAAGTCAGCCTCCCAAAGgtgagttctctcttccttccctcacagaggctgtcctgagcagtcctact #### Plekhs1_ID12105_10 --> 1 - 2 Original Alignment cAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCtg agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagcAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATAtggtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg Alignment from CESAR cAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCtg agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagcAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATAtggtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg Alignment from Spaln_aa2Genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagCAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg Alignment from Spaln_nt2Genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagCAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg Alignment from Pairagon CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagCAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg Alignment from Exonerate_protein2genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagCAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg Alignment from Exonerate_coding2genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagCAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg Alignment from GeneWise CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtcagtatggtctaatttgacctatgacccccccgcccttccacagCAATATTCCTGATGAGAGCCAAGTGGAGACCCTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtgagtttgagctgtggagggataatgagcaggagttaaaaatagagggg #### Plekhs1_ID12106_11 --> 1 - 0 Original Alignment tGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagtGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGAT---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg Alignment from CESAR tGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagtGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGAT---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg Alignment from Spaln_aa2Genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagTGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGAT---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg Alignment from Spaln_nt2Genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagTGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGATC---TCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg Alignment from Pairagon TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagTGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGATC---TCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg Alignment from Exonerate_protein2genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagTGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGAT---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg Alignment from Exonerate_coding2genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagTGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGAT---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg Alignment from GeneWise TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG cagcgaactaagttttgattgagcaaagctctctttctctacttaaacagTGTAGCTCGGTGGGAAGGCCCTCCCCGGTTAGGGTGCCTATTCTACCATGGAGAT---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCAATGTATACAGAAGGAGgtgagtccatttcaagaatacttgatctactccctaatttcagaggaatg #### Pnlip_ID12743_2 --> 2 - 0 Original Alignment gaAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttcttcatgtgttaatttaatgtgtgttttccgtgtctcttttaatgcaggaAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac Alignment from CESAR gaAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttcttcatgtgttaatttaatgtgtgttttccgtgtctcttttaatgcaggaAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac Alignment from Spaln_aa2Genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttcttcatgtgttaatttaatgtgtgttttccgtgtctcttttaatgcagGAAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac Alignment from Spaln_nt2Genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttcttcatgtgttaatttaatgtgtgttttccgtgtctcttttaatgcagGAAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac Alignment from Pairagon GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttcttcatgtgttaatttaatgtgtgttttccgtgtctcttttaatgcagGAAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac Alignment from Exonerate_protein2genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttcttcatgtgttaatttaatgtgtgttttccgtgtctcttttaatgcagGAAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac Alignment from Exonerate_coding2genome GAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG ttcttcatgtgttaatttaatgtgtgttttccgtgtctcttttaatgcagGAAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac Alignment from GeneWise CTAATGCTGTGGACATTTGCAGTGCTGCTGGGAGCAGTAGCTGGAAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAGCCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAG tgttaat---TTAATGTGTGTTTTCCGTGTCTCTTTTAAT------GCAGGAAGGGAAGTTTGCTTTGACAAACTCAGCTGTTTCAGTGATGACACGCCTTGGTCAGGAACACTAGACAGACCACTGAAAGCACTACCCTGGAGCCCAGCACAGATCAATACCCGCTTTTTACTCTACACCAATGAAAAGCCAGATAACTACCAGgtaagtattgcacctgttttcaggattaaaaagcatctacaatacctaac #### Pnlip_ID12750_9 --> 0 - 1 Original Alignment AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAc tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCAcgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg Alignment from CESAR AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAc tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCAcgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg Alignment from Spaln_aa2Genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg Alignment from Spaln_nt2Genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg Alignment from Pairagon AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg Alignment from Exonerate_protein2genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg Alignment from Exonerate_coding2genome AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg Alignment from GeneWise AATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTACGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCAC tgtcttgataatcagagcacttccagctacattttcttctattttcatagAATAAATGCTTCCCATGTGGGAGCGGAGGATGCCCACAGATGGGTCATTATGCTGACAGATATCCAGGAAAGACAAGCAGGCTCTACCAAACATTTTACCTCAACACTGGAGATAAGAGCAACTTTGCACgtaagtttctgtttcttttgaccttttgctctttggttctagctactttg #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagttaacctgtttattattgttagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGCACAGCCATTAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaaagcttcatgagccctaggaacactttgtagtctactgacccattct #### Pnliprp1_ID12769_6 --> 2 - 1 Original Alignment gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGg gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcaggaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGggtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta Alignment from CESAR gaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGg gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcaggaCTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGggtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta Alignment from Spaln_aa2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGGgtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta Alignment from Spaln_nt2Genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGGgtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta Alignment from Pairagon GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGGgtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta Alignment from Exonerate_protein2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGGgtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta Alignment from Exonerate_coding2genome GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGGgtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta Alignment from GeneWise GACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGACCCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGG gatcaacctgcagttcaacacatttgcttttccttttctctgtctttcagGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGATCCGGCTGGACCCCTCAGATGCTGACTTTGTCGATGTGATTCACACAGATGCAGCTGCCTTGATCCCATTCTTGGgtaagctctggtgccctggcaccagctggcaccagctgtggcaaggccta #### Pnliprp1_ID12770_7 --> 2 - 1 Original Alignment gcTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAg agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccaggcCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAggtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg Alignment from CESAR gcTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAg agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccaggcCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAggtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg Alignment from Spaln_aa2Genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccagGCCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg Alignment from Spaln_nt2Genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccagGCCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg Alignment from Pairagon GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccagGCCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg Alignment from Exonerate_protein2genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccagGCCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg Alignment from Exonerate_coding2genome GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccagGCCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg Alignment from GeneWise GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAG agggccctgtatgcccctgaacatgtctggtcaaattcctatttaaccagGCCTGGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGGGGACAGTACATGCCTGGGTGCAAGAAGAACACTCTTTCACAGATTGTGGACATTGATGGCATCTGGTCAGgtaaggcacaggtgggtggggagcatgtgcatgtgtagcggaactcaatg #### Pnliprp2_ID12788_10 --> 2 - 2 Original Alignment gtTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCaa tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacaggtTGGAGGTATAAGGTGTCAGTTACACTATCAGGCGCGAAG---------------------GTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCaagtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc Alignment from CESAR gtTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCaa tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacaggtTGGAGGTATAAGGTGTCAGTTACACTATCAGGCGCGAAG---------------------GTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCaagtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc Alignment from Spaln_aa2Genome GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacagGTTGGAGGTATAAGGTGTCAGTTACACTATCAGGCGCGAAG---------------------GTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCAAgtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc Alignment from Spaln_nt2Genome GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacagGTTGGAGGTATAAGGTGTCAGTTACACTATCAGGCGCGAA---------------------GGTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCAAgtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc Alignment from Pairagon GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacagGTTGGAGGTATAAGGTGTCAGTTACACTATCAGGCGCGAA---------------------GGTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCAAgtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc Alignment from Exonerate_protein2genome ACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacaggttggaggtataaggtgtcagttacactatcagGCGCGAAGGTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCAAgtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc Alignment from Exonerate_coding2genome ACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacaggttggaggtataaggtgtcagttacactatcagGCGCGAAGGTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCAAgtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc Alignment from GeneWise GTTGGAGATACAAAGTATCAGTCACACTATCAGGAGCAAAGAAGCTGAGTGGGTACATCTTGGTCGCTCTGTACGGATGTAACGGAAACTCAAAGCAGTATGAAGTTTTCAA tgtttcagccaagtaggactgttgtcactggtgtctgacggttccaacagGTTGGAGGTATAAGGTGTCAGTTACACTATCAGGCGCGAAG---------------------GTTGCTCTGTATGGATGCAATGGAAACTCAAAGCAGTATGAAGTTTTCAAgtgagttttccagtgtacacaattacaaaatgaatgcgatgcaaacttcc #### Pnliprp2_ID12789_11 --> 1 - 2 Original Alignment aGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAga ccttggactcacccatccagctgagatgataatttaatgcatttatttaggGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAgagtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc Alignment from CESAR aGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAga ccttggactcacccatccagctgagatgataatttaatgcatttatttaggGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAgagtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc Alignment from Spaln_aa2Genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccttggactcacccatccagctgagatgataatttaatgcatttatttagGGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAGAgtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc Alignment from Spaln_nt2Genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccttggactcacccatccagctgagatgataatttaatgcatttatttagGGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAGAgtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc Alignment from Pairagon AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccttggactcacccatccagctgagatgataatttaatgcatttatttagGGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAGAgtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc Alignment from Exonerate_protein2genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccttggactcacccatccagctgagatgataatttaatgcatttatttagGGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAGAgtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc Alignment from Exonerate_coding2genome AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccttggactcacccatccagctgagatgataatttaatgcatttatttagGGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAGAgtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc Alignment from GeneWise AGGATCCCTCCAACCAGAAGCAAGATATATTCGTGACATTGATGTGGACGTCAACGTTGGAGAAATCCAGAAGGTTAAGTTCCTCTGGAACAACAAGGTGATAAATCTCTTCCGGCCCACTATGGGAGCTTCACAAATCACAGTGCAACGCGGTAAAGACGGGAAAGA ccttggactcacccatccagctgagatgataatttaatgcatttatttagGGGATCCCTGCAACCAGAAGCGAGGTATATTTGCGACATTGATGTGGATGTTAACATTGGAGAAATCCAGAAGGTCAAGTTCCTTTGGAACAACAAGGTCATTAATCTCTTCCAGCCTACTATGGGAGCTGCACAGATCACGGAGCAACACGGGAAAGATGGGAAAGAgtgagtatcccccagtgacaggataaaaaaatttacgcatgctattcttc #### Pola2_ID1328_13 --> 0 - 2 Original Alignment AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAaggtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag Alignment from CESAR AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAaggtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag Alignment from Spaln_aa2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag Alignment from Spaln_nt2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag Alignment from Pairagon AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag Alignment from Exonerate_protein2genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag Alignment from Exonerate_coding2genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag Alignment from GeneWise AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacgcacactaggggtctgccctaagtgctctctcacttctcccttgcagAACTCTAAGTTGACTAGCCCATTTGAAGACGTTCTCAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaagtttcccaactgctggacaaaacccaatttcaaaggtactacagag #### Pola2_ID1334_7 --> 2 - 0 Original Alignment ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagttCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc Alignment from CESAR ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagttCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc Alignment from Spaln_aa2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagTTCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc Alignment from Spaln_nt2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagTTCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc Alignment from Pairagon TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagTTCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc Alignment from Exonerate_protein2genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagTTCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc Alignment from Exonerate_coding2genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagTTCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc Alignment from GeneWise TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA gttacagcgagctaacctttcttaccaacaaacactctgcttcctcttagTTCTGACCAGTAAAATTGAAGAGCTTGGCAGTGAGCTAAAAGAACATCACAAGATTGAGGCCTTTACTCCAATTCTGGGTCCAGCACTAgtaaggtgaggacacatctgggtgtaatgagggaaggcttgtgcccactc #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from CESAR gtATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_nt2Genome GTATCACAAGGCTGC---AGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg #### Poll_ID9485_2 --> 2 - 2 Original Alignment gaTGGCTGAGCTCC---CTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGag aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttaggaTGGCTTAGCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGaggtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc Alignment from CESAR gaTGGCTGAGC---TCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGag aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttaggaTGGCTTAGCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGaggtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc Alignment from Spaln_aa2Genome GAGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttaggatggcttagCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGAGgtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc Alignment from Spaln_nt2Genome GATGGCTGAGCTCC---CTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttagGATGGCTTAGCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGAGgtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc Alignment from Pairagon GATGGCTGAG---CTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttagGATGGCTTAGCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGAGgtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc Alignment from Exonerate_protein2genome GATGGCTG---AGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttagGATGGCTTAGCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGAGgtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc Alignment from Exonerate_coding2genome GATGGCTG---AGCTCCCTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttagGATGGCTTAGCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGAGgtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc Alignment from GeneWise GATGGCTGAGCTCC---CTGAGAGCCCACATTATGCCCGCTGGCATTGGACGTGCCCGGGCTGAACTCTTTGAGAAGCAGATTATCCACCATGGCGGCCAGGTGTGCTCTGCCCAGGCCCCAGGAGTCACTCACATTGTGGTGGATGAAGACATGGACTATGAGCGGGCTCTCCGGCTCCTCAGGTTGCCCCAGCTACCCCCTGGTGCCCAGCTGGTGAAGTCCACCTGGCTGAGCTTGTGCCTGCAGGAGGGAAGGCTGACAGACACGGAAGGATTCAGCCTTCCCATGCCCAAGAG aacaggaggtggctgcatcatacagttctgtgtcgggtttctttccttagGATGGCTTAGCTCCTCCCTGAGAGCCCACATTATGCCCACTGGCATTGGATGTGCCCAAACTGAACTATTTGAGAAGCAGATTATCCACCATGGGGGGCAGGTATGCTCTACCCAGGCCCCTGGAGTCACCCATATATTGGTGGATGAAGACATGGACTATGAGCGGTCTCTCCAGCTCCTCCGGTTGCCCCAGCTAACCCCTGGTGCTCAGCTTGTGAAGTCCACTTGGCTCAGCTTGTGCCTGCAGGAGGGAAGGCTTACAGACACAGAAGGATTCAGTCTCCCCATGACAAAGAGgtaagtagtaaatggccatactgctgaaggtaatttatagattcaatgcc #### Polr2g_ID2378_5 --> 0 - 0 Original Alignment TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gcctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from CESAR TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Spaln_aa2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gcctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Spaln_nt2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gcctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Pairagon TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gcctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Exonerate_protein2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gcctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Exonerate_coding2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gcctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from GeneWise TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gcctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac #### Polr2g_ID2380_3 --> 1 - 0 Original Alignment aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagaTATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa Alignment from CESAR aTATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagaTATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa Alignment from Spaln_aa2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa Alignment from Spaln_nt2Genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa Alignment from Pairagon ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa Alignment from Exonerate_protein2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa Alignment from Exonerate_coding2genome ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa Alignment from GeneWise ATATGGCTTTGTAATTGCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGAGGTTTTGTTCTTTATCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTGGTCACTCAGGTCAACAAG gaggcttctgaggggttttcagctggttcatcctgctgagtctcttgcagATATGGCTTTGTAATTTCTGTCACCACCATCGACAATATTGGTGCTGGTGTGATCCAGCCAGGCCGGGGTTTTGTTCTTTACCCAGTGAAATACAAAGCTATTGTTTTCCGGCCCTTTAAAGGTGAAGTGGTGGATGCTGTTGTCGCTCAGGTTAACAAGgtacgcgtatttttcatggaaagtgattgcctgatatgtagtatgcagaa #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacccagtttacttaatatacttccttatctgcctttctcccttggacaggtGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt cacccagtttacttaatatacttccttatctgcctttctcccttggacaggtGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT cacccagtttacttaatatacttccttatctgcctttctcccttggacagGTGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAATATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGCGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtgaaggatttgaactctgacatcttcctggctcatttgtggctgttagg #### Ppp1r14b_ID1939_2 --> 0 - 0 Original Alignment GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg Alignment from CESAR GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg Alignment from Spaln_aa2Genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg Alignment from Spaln_nt2Genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg Alignment from Pairagon GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg Alignment from Exonerate_protein2genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg Alignment from Exonerate_coding2genome GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg Alignment from GeneWise GAGGAGGAGATCCCGGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAG taccctcacctggctttaccaatctgtgacttttaaaactgtttttctagGAGGAGGAGATCCCAGAGCTCGAGATAGATGTGGATGAACTTTTAGACATGGAGAGTGATGATACCCGGGCTGCTAGGGTCAAGgtgagttgagggcactgagggtagggttggacaggagactgagcaccttg #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Spaln_nt2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Pairagon GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Exonerate_coding2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg #### Ppp1r32_ID2848_3 --> 1 - 0 Original Alignment gCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagcCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa Alignment from CESAR gCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagcCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa Alignment from Spaln_aa2Genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagCCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa Alignment from Spaln_nt2Genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagCCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa Alignment from Pairagon GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagCCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa Alignment from Exonerate_protein2genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagCCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa Alignment from Exonerate_coding2genome GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagCCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa Alignment from GeneWise GCAACAAATCCGAGACACTTCCAAGTCTGTGACCAGTCAGAGCTACTCTCCCCTAGAAGTGCCCGATGGTAAACAACCCCTGCCCTGGAACCTGCACCAGACAACCTCCAGCTACGGGCGAGAAAAACTCAACCCTGGACCACATTCCAAGGAG ataagaggttgccttggggggcacagctcttgctttcatttgatttccagCCAACAAATTCGAGACACCTCTAAGTCTGTGACCAGTCAATGCTACTCCCCCCTGGAAGTGCCTGATGGGAAACAACCTCTGCCATGGAACCTGCACCACAGAACCTCCACCTATGGGCGAGAAAAACTTAATCCTGGACCACATTCCAAGGAAgtaagtaatggaccaaggtttgatgggatgggctagaatgtgagccataa #### Ppp6r3_ID71_21 --> 1 - 2 Original Alignment tGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAag tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagtGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAaggtgagcagactgccgttccctttgggaggtcctacctacacagacacact Alignment from CESAR tGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAag tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagtGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAaggtgagcagactgccgttccctttgggaggtcctacctacacagacacact Alignment from Spaln_aa2Genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagTGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAAGgtgagcagactgccgttccctttgggaggtcctacctacacagacacact Alignment from Spaln_nt2Genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagTGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAAGgtgagcagactgccgttccctttgggaggtcctacctacacagacacact Alignment from Pairagon TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagTGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAAGgtgagcagactgccgttccctttgggaggtcctacctacacagacacact Alignment from Exonerate_protein2genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagTGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAAGgtgagcagactgccgttccctttgggaggtcctacctacacagacacact Alignment from Exonerate_coding2genome TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagTGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAAGgtgagcagactgccgttccctttgggaggtcctacctacacagacacact Alignment from GeneWise TGAGGAAGAAAAACTGTCTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGCTCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAG tggatatggcgtctggtatgtgataccccctttcttctgtatttcctcagTGAGGAAGAAAAATTGTCTACCTCACAAGATGCTGCTTGCAAGGATGCAGAAGAGGCCCCAGAGCCAGCAGAGGCCAAGTGTCCAGCTCCTCTGACTCCCAGCAGTAGTTCAGAGCGAAGgtgagcagactgccgttccctttgggaggtcctacctacacagacacact #### Ppp6r3_ID75_18 --> 2 - 2 Original Alignment caCCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGag ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagcaCCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGaggtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc Alignment from CESAR caCCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGag ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagcaCCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGaggtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc Alignment from Spaln_aa2Genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagCACCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGAGgtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc Alignment from Spaln_nt2Genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagCACCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGAGgtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc Alignment from Pairagon CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagCACCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGAGgtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc Alignment from Exonerate_protein2genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagCACCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGAGgtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc Alignment from Exonerate_coding2genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagCACCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGAGgtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc Alignment from GeneWise CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG ataaacagggtattacaggttgtgagcagtaaccaatacttcctttccagCACCCACCTGGTCAGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCTCTGAGgtaccgagaggggtaacttctcagtgtccgcataaggaggcaggaagtgc #### Ppp6r3_ID79_14 --> 0 - 2 Original Alignment GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCaagtacttaaatttttgtctatccttattatgactccccacacatgttttga Alignment from CESAR GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCaa atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCaagtacttaaatttttgtctatccttattatgactccccacacatgttttga Alignment from Spaln_aa2Genome GCCTTTTCTGATTATCAGATGCAACAA---ATGACGTCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCAAgtacttaaatttttgtctatccttattatgactccccacacatgttttga Alignment from Spaln_nt2Genome GCCTTTTCTGATTATCAGATGCAACAAATGACGTC---CAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCAAgtacttaaatttttgtctatccttattatgactccccacacatgttttga Alignment from Pairagon GCCTTTTCTGATTATCAGATGCAACAAATGA---CGTCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCAAgtacttaaatttttgtctatccttattatgactccccacacatgttttga Alignment from Exonerate_protein2genome GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCAAgtacttaaatttttgtctatccttattatgactccccacacatgttttga Alignment from Exonerate_coding2genome GCCTTTTCTGATTATCAGATGCAACAAATGACG---TCCAATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCAAgtacttaaatttttgtctatccttattatgactccccacacatgttttga Alignment from GeneWise GCCTTTTCTGATTATCAGATGCAACAAATGACGTCC---AATTTTATTGACCAGTTTGGCTTCAACGATGAGAAGTTTGCAGACCAAGACGACATTGGCAA atagagtccactataaatgatttcattgacattttctattgtcaatacagGCATTTTCTGATTACCAGATGCAACAAAAGACATCATCCAATTTTACCGACCAATATGGCTTCAATGATGAAAAGTTTGCAGATCAAGATGACATTGGCAAgtacttaaatttttgtctatccttattatgactccccacacatgttttga #### Ppp6r3_ID83_11 --> 1 - 1 Original Alignment gGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAg cccccacaacaatatatcacctgaatgcagtttttcattcttattcctaggGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAggtaagatgataaaagagattaactaccagttaactacatgacaacaggtc Alignment from CESAR gGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAg cccccacaacaatatatcacctgaatgcagtttttcattcttattcctaggGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAggtaagatgataaaagagattaactaccagttaactacatgacaacaggtc Alignment from Spaln_aa2Genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG cccccacaacaatatatcacctgaatgcagtttttcattcttattcctagGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAGgtaagatgataaaagagattaactaccagttaactacatgacaacaggtc Alignment from Spaln_nt2Genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG cccccacaacaatatatcacctgaatgcagtttttcattcttattcctagGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAGgtaagatgataaaagagattaactaccagttaactacatgacaacaggtc Alignment from Pairagon GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG cccccacaacaatatatcacctgaatgcagtttttcattcttattcctagGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAGgtaagatgataaaagagattaactaccagttaactacatgacaacaggtc Alignment from Exonerate_protein2genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG cccccacaacaatatatcacctgaatgcagtttttcattcttattcctagGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAGgtaagatgataaaagagattaactaccagttaactacatgacaacaggtc Alignment from Exonerate_coding2genome GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG cccccacaacaatatatcacctgaatgcagtttttcattcttattcctagGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAGgtaagatgataaaagagattaactaccagttaactacatgacaacaggtc Alignment from GeneWise GGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAG cccccacaacaatatatcacctgaatgcagtttttcattcttattcctagGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACAAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCATTAGTACAGCAGCTTATCAAAGgtaagatgataaaagagattaactaccagttaactacatgacaacaggtc #### Ppp6r3_ID87_7 --> 1 - 0 Original Alignment gTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacaggTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta Alignment from CESAR gTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacaggTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta Alignment from Spaln_aa2Genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta Alignment from Spaln_nt2Genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta Alignment from Pairagon GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta Alignment from Exonerate_protein2genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta Alignment from Exonerate_coding2genome GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta Alignment from GeneWise GTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAG tgttattttacaacatttaggcagttgccatttatttataacccacacagGTTTGAAGGCCATATAGAAATCTGCCCCCCAGGTATGAGTCACTCAGCTTGTTCAGTCAATAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCATTCCATGAACTCCTTCTTGAACCACCCAAGgtatccttgctgcagcatgttagctgtcactgtgcagtgtcattgtttta #### Ppp6r3_ID90_4 --> 0 - 0 Original Alignment TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg Alignment from CESAR TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg Alignment from Spaln_aa2Genome TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg Alignment from Spaln_nt2Genome TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg Alignment from Pairagon TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg Alignment from Exonerate_protein2genome TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg Alignment from Exonerate_coding2genome TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg Alignment from GeneWise TGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGAT tactggagcttgaacaggaggcacaaaccacctctcttcccctaccccagTGGCTAAACGAGGAAAGGATTATCCAGAGGCTAGTGGAAATAGTTCACCCATCACAAGAAGAAGATgttagtccctgcacgtgacatctttgtgcatataaactgaggcaagagtg #### Prkg1_ID6496_11 --> 0 - 2 Original Alignment GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGag tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGaggtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt Alignment from CESAR GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGag tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGaggtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt Alignment from Spaln_aa2Genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAGgtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt Alignment from Spaln_nt2Genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAGgtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt Alignment from Pairagon GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAGgtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt Alignment from Exonerate_protein2genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAGgtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt Alignment from Exonerate_coding2genome GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAGgtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt Alignment from GeneWise GTCCAGTTGAAAAGTGAAGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAG tctttataaaagactatccctcgtgtttctcccccccccccccccgaaagGTCCAGTTGAAAAGTGAGGAATCCAAAACATTTGCAATGAAGATCCTCAAGAAACGCCACATTGTGGACACCAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCTGACTTCATTGTGAGgtaagtgactaccactcacacatgcgcacacacacaccagacattgtttt #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagtgGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaattatgatcttcctgtgcctctagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagtgGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaattatgatcttcctgtgcctctagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaattatgatcttcctgtgcctctagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaattatgatcttcctgtgcctctagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaattatgatcttcctgtgcctctagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaattatgatcttcctgtgcctctagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaattatgatcttcctgtgcctctagGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatgaccgtgatgttcttcttct Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatcaacctcctttcccattccc Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatgaccgtgatgttcttcttct Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatgaccgtgatgttcttcttct Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatgaccgtgatgttcttcttct Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatgaccgtgatgttcttcttct Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaagaccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatgaccgtgatgttcttcttct Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGGTAAGACCAATCTGTCTCTTGATGCCTCTGCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatgaccgtgatgttcttcttct #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaatcatatttcattgtaaagtccctatcaacctcctttcccattcccagccCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from CESAR ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aagtcatatttcattgtaaagtccctatcaacctcctttcccattcccagccCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaatcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaatcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Pairagon CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaatcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaatcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaatcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaatcatatttcattgtaaagtccctatcaacctcctttcccattcccagCCCTGGCCACTCTAAAACCACAAGCTGGCCTTATTGTACCTCAAGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtcagacttccaccctcagggccctaccagcaaatgacacttcacaagag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg #### Prpf19_ID3052_11 --> 0 - 0 Original Alignment GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag Alignment from CESAR GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag Alignment from Spaln_aa2Genome GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag Alignment from Spaln_nt2Genome GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag Alignment from Pairagon GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag Alignment from Exonerate_protein2genome GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag Alignment from Exonerate_coding2genome GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag Alignment from GeneWise GAACTGGTGTTTTCTGCGTCCCCTGATGCTACTATCAGGATTTGGTCAGTCCCGAACACTTCCTGCGTACAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAG agcattccatctgacctcatggattcttctatgctactccccaactacagGAACTGGTGTTTTCTGCGTCCCCTGACGCTACTGTCCGGATTTGGTCGGTCCCAAACACTTCCTGCGTTCAGGTTGTTCGGGCCCATGAGAGTGCAGTGACAGGCCTCAGCCTCCATGCTACTGGAGACTATCTCCTGAGCTCCTCTGATGATCAGgtaacaccacagccaagctgagcttgcgcccagagaggaaacacttccag #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG gcagcttttcctcattaagtcagtcgattgaaggacattttctttttcagGAGCATACTAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGTGTTCTCTGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGTTGGACAACAACTTTGAGgtgagttattccccatttctactgctgtggttgagctatcacttgtgatg #### Psat1_ID3962_7 --> 1 - 2 Original Alignment cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagttaatgcgttatagatactatggactagacaagatgctttcatga Alignment from CESAR cATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgt gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagcATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATgtgtaagttaatgcgttatagatactatggactagacaagatgctttcatga Alignment from Spaln_aa2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatagatactatggactagacaagatgctttcatga Alignment from Spaln_nt2Genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatagatactatggactagacaagatgctttcatga Alignment from Pairagon CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatagatactatggactagacaagatgctttcatga Alignment from Exonerate_protein2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatagatactatggactagacaagatgctttcatga Alignment from Exonerate_coding2genome CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatagatactatggactagacaagatgctttcatga Alignment from GeneWise CATCTACGTCATGGGCATGGTCCTGGAATGGATCAAGAACAACGGCGGGGCCGCAGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGT gaatgccttgtctctctggagtagaaagcttccacccactgtctcctcagCATCTATGTCATGGGCATGGTCCTGGAATGGATCAAGAACAATGGTGGGGCTGCTGCCATGGAGAAGCTCAGCTCCATCAAATCCCAAATGATTTATGAGATCATTGATAATTCTCAAGGATTTTATGTgtaagttaatgcgttatagatactatggactagacaagatgctttcatga #### Psat1_ID3965_4 --> 1 - 1 Original Alignment aGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAa aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagaGCCATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTagtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc Alignment from CESAR aGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAa aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagaGCCATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTagtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc Alignment from Spaln_aa2Genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagAGCCATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTAgtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc Alignment from Spaln_nt2Genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagAGCCATTCCCAACA---ACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTAgtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc Alignment from Pairagon AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagAGCCATTCCCAACA---ACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTAgtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc Alignment from Exonerate_protein2genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagAGCCATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTAgtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc Alignment from Exonerate_coding2genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagAGCCATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTAgtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc Alignment from GeneWise AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacataatgctagtttatgtgatcacgtggctgctttgctgctctcagAGCCATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGAAGTGCTGACTTTGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTAAACATTGTTCATGCTAAACTTGGAAGTTACACTAgtacaatctggaagattaagatgcccagcaaagtggtggctggcccctgc #### Ptar1_ID5194_4 --> 1 - 2 Original Alignment gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag gggggccaagacattagaattgagcaggctgagtatttctttccctccagaAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATaggtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc Alignment from CESAR gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag gggggccaagacattagaattgagcaggctgagtatttctttccctccagaAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATaggtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc Alignment from Spaln_aa2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG gggggccaagacattagaattgagcaggctgagtatttctttccctccagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc Alignment from Spaln_nt2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG gggggccaagacattagaattgagcaggctgagtatttctttccctccagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc Alignment from Pairagon GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG gggggccaagacattagaattgagcaggctgagtatttctttccctccagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc Alignment from Exonerate_protein2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG gggggccaagacattagaattgagcaggctgagtatttctttccctccagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc Alignment from Exonerate_coding2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG gggggccaagacattagaattgagcaggctgagtatttctttccctccagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc Alignment from GeneWise GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG gggggccaagacattagaattgagcaggctgagtatttctttccctccagAAAGGAGCTCATCCTCTCTGGCACTTTAAGCCCAATTAAGGATCTGCATCTGGGCAAACTGGCCTTAACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtcggatgaaaatgttgtattgctgctgactatataagctcaagcctggc #### Pten_ID6746_4 --> 1 - 1 Original Alignment aTGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAg aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccaggTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAggtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc Alignment from CESAR aTGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAg aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccaggTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAggtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc Alignment from Spaln_aa2Genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccagGTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAGgtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc Alignment from Spaln_nt2Genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccagGTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAGgtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc Alignment from Pairagon ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccagGTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAGgtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc Alignment from Exonerate_protein2genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccagGTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAGgtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc Alignment from Exonerate_coding2genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccagGTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAGgtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc Alignment from GeneWise ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaactccaaagtggagggtaactttatgctgtctcctcccgcctcaccagGTGTGCTGAGAGACATTACGACACCACCAAATTTAACTGCAGAGgtaagaatcaaaatcagtacagcaataatgcattaataaagaccaacatc #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagctTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagctTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTAAGTAATCCTGACCCTAACcttttggtgtttagtcgcaataaaaagac Alignment from Exonerate_coding2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTAAGTAATCCTGACCCTAACcttttggtgtttagtcgcaataaaaagac Alignment from GeneWise CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG tttactcactttgggtttatgcagatgttttttctgtccctcatccccagCTTGCTTTCTGGACTCTATGGCCACCCTAGGGCTTGCTGCTTATGGCTATGGGATCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtaagtaatcctgaccctaaccttttggtgtttagtcgcaataaaaagac #### Pygm_ID1681_5 --> 0 - 0 Original Alignment ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatctatccacgctttcttctcagATGGAAGAAGCAGATGAC---------------------TGGGAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca Alignment from CESAR ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatctatccacgctttcttctcagATGGAAGAAGCAGATGAC---------------------TGGGAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca Alignment from Spaln_aa2Genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatctatccacgctttcttctcagATGGAAGAAGCAGATGAC---------------------TGGGAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca Alignment from Spaln_nt2Genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatctatccacgctttcttctcagATGGAAGAAGCAGATGA---------------------CTGGGAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca Alignment from Pairagon ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatctatccacgctttcttctcagATGGAAGAAGCAGATGA---------------------CTGGGAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca Alignment from Exonerate_protein2genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatCTATCCACGCTTTCTTCTCAGATGGAAGAAGCAGATGACTGGGAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca Alignment from Exonerate_coding2genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatCTATCCACGCTTTCTTCTCAGATGGAAGAAGCAGATGACTGGGAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca Alignment from GeneWise ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG gcaagtgctttgagccacctgtcaccaatctatccacgctttcttctcagATGGAAGAAGCAGATGACTGG---------------------GAGAAAGCTCGGCCTGAATTCACATTGCCTGTCCACTTCTGTGGTCGAGTAGAACACACCAGCCAGGGTGCCAAGTGGGTGGACACGCAGgtgagggtgatcataagtacaagtgctgagtgggcagggggatggtctca #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtctctctgttgcagctagcactaagttctgtcatgtctcccccctagtcAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aggactctctgttgcagctagcactaagttctgtcatgtctcccccctagtcAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtctctctgttgcagctagcactaagttctgtcatgtctcccccctagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtctctctgttgcagctagcactaagttctgtcatgtctcccccctagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtctctctgttgcagctagcactaagttctgtcatgtctcccccctagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtctctctgttgcagctagcactaagttctgtcatgtctcccccctagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtctctctgttgcagctagcactaagttctgtcatgtctcccccctagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtctctctgttgcagctagcactaagttctgtcatgtctcccccctagTCAATGTTGGTGGCTACATCCAGGCTGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTATACCCCAATGATAATgtacagtgccctccaccagaagccttaaacctaggggaccatgaagggaa #### Pygm_ID1688_12 --> 1 - 0 Original Alignment cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct Alignment from CESAR cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct Alignment from Spaln_aa2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct Alignment from Spaln_nt2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct Alignment from Pairagon CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct Alignment from Exonerate_protein2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct Alignment from Exonerate_coding2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct Alignment from GeneWise CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG ttgacagcactgataatatgccaggtactgatttctatcttcacgttcagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATTACCCCTCGGCGCTGGCTTGTACTATGTAACCCTGCGCTTGTGGAGGTCATTGCTGAGgttagagttcatggtgtaattgatatcactttcgcaagtgatcccagcct #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttaggcATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttaggcATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttagGCATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttagGCATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta Alignment from Pairagon GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttagGCATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttagGCATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttagGCATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG ggcagtctgtgttgtaaagcagctaagcattgttctttttttcctcttagGCATCAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgaggcggttgggttagagatctagtgtagcttccatcttcagcactta #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctagcctttcctgttacagagctgccccctccttctccttttcctagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAATgtacagtagtgttcagcaaccaggggtgggaagacccttggctcttgtgg #### Pyroxd2_ID8594_14 --> 2 - 0 Original Alignment tgTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagtgTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg Alignment from CESAR tgTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagtgTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg Alignment from Spaln_aa2Genome TGTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagTGTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg Alignment from Spaln_nt2Genome TGTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagTGTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg Alignment from Pairagon TGTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagTGTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg Alignment from Exonerate_protein2genome TGTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagTGTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg Alignment from Exonerate_coding2genome TGTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagTGTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg Alignment from GeneWise TGTTTGACTGTATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGCCAGAGATATTCTCACCCCACCGGATCTAGAGAGAATCTTCAGGCTTCCTGGAGGG cagtaagtattaataatttacaaatgccatttcttgatgtctaattacagTGTTTGACTGTATTGAAGCTTATGCACCCGGCTTCGAGAGATCTGTGCTAGCCAGAGATATTCTCACCCCACCAGATCTAGAGAGAATTTTCAGGCTTCCTGGAGGGgtattgaggagtggaggcctgagagccttaacatgctatcttctttcttg #### Pyroxd2_ID8599_9 --> 1 - 0 Original Alignment gTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagaTATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGGC---TGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag Alignment from CESAR gTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagaTATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGGC---TGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag Alignment from Spaln_aa2Genome GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagATATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGGC---TGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag Alignment from Spaln_nt2Genome GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagATATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGG---CTGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag Alignment from Pairagon GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagATATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGG---CTGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag Alignment from Exonerate_protein2genome GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagATATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGGC---TGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag Alignment from Exonerate_coding2genome GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagATATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGGC---TGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag Alignment from GeneWise GTATGTGCTGCTGCATCACGTGATGGGTAGCCTGGAGGGGACGCAGGGCGCCTGGAGCTACGTCCAGGGTGGCATGGGCGCCCTCTCTGATGCCATCGCGAGCTCGGCTGCTACACGTGGAGCAAGCATCTTCACAGAAAAG gaggtggagatggacgcttcctgccctaagtctcgtgttctcctccacagATATGTGTTCCTGCATCACGTGATGGGTAGCCTGGGGGGGGCACAAGGC---TGGAGTTATGTCCAGGGGGGCATGGGTGCCCTCTCTGATGCCATTGCAAGCTCAGCTGCTACACGTGGGGCAAGCATCTTCATAGAAAAGgtaagtgccccttatcctcctgactgttggcctagatacagggtgaagag #### Rab1b_ID843_5 --> 0 - 0 Original Alignment GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTTAAT---TGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc Alignment from CESAR GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTTAAT---TGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc Alignment from Spaln_aa2Genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTTAAT---TGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc Alignment from Spaln_nt2Genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTTA---ATTGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc Alignment from Pairagon GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTTA---ATTGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc Alignment from Exonerate_protein2genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTT---AATTGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc Alignment from Exonerate_coding2genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTT---AATTGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc Alignment from GeneWise GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgccatacctcccttgacctgggtgtggttcctctctaatgtaattacagGAGTCCTATGCCAATGTT---AATTGGCTGCAGGAGATAGATCGCTACACCAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGACCTTACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaagtaggcctgcactgtcaggcttttgggacccacatcgattcattcc #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACATTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg #### Rab3il1_ID2654_9 --> 0 - 1 Original Alignment ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATggtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc Alignment from CESAR ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATg agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATggtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc Alignment from Spaln_aa2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc Alignment from Spaln_nt2Genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc Alignment from Pairagon ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc Alignment from Exonerate_protein2genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc Alignment from Exonerate_coding2genome ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc Alignment from GeneWise ATCACCGCAGTATGCAACTTCTTCACCTATATTCGCTACATCCAGCAAGGTCTGGTTCGGCAGGATG agcattaggagaatcctagtgtgccaccttgagggcctgtcattctctagATCACCACAGTATGCAACTTCTTCACCTATATTCGCTACATTCAGCAAGGTCTGGTCCGGCAGGATGgtaactagcccctaatcatcttctacacaaatagttcatgtgtgggaggc #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg Alignment from Pairagon CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG cagtttgatctcaatttccagctcaacatgctcttcctctttctctgcagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCTTATGGAGCTAGCAGAACATCTCACCTACCTGGAGTATCGTTCCTTCTGCAAAATACTGgtaagccttgaaggcttgttggcagggtaaaggtcaggtgtgtgtttgtg #### Rasgrp2_ID1709_8 --> 0 - 0 Original Alignment CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga Alignment from CESAR CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga Alignment from Spaln_aa2Genome CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga Alignment from Spaln_nt2Genome CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga Alignment from Pairagon CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga Alignment from Exonerate_protein2genome CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga Alignment from Exonerate_coding2genome CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga Alignment from GeneWise CTCTGGGAAGGTCTGACAGAACTAGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGCTGGCAGCCTGCGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGCTGGCTCTGCCTGACTGGCTGGACCCAGGTCGGACCCGGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATTCTGGAGGAGTTGGCCATGGTGACCAGCCTTCGCCCACCCGTACAAGCCAACCCCGACCTGCTGAGCCTGCTCACG tcaagggcaagagttaactttttgtcgctggaagtttccttttgccccagCTCTGGGAAGGTTTGACAGAGCTTGTGACAGCTACTGGCAACTACAGCAACTACCGGCGCAGGTTGGCAGCCTGTGTGGGCTTCCGCTTTCCTATCCTGGGAGTGCACCTCAAGGATCTAGTGGCTCTGCAGTTGGCACTGCCTGATTGGCTAGACCCAGGTAGGACACAGCTCAATGGAGCCAAGATGAGGCAGCTTTTCTGCATCCTGGAGGAGCTGGCCATGGTAACCAGCCTTCGCCCACCTGTGCAAGCCAACCCTGACCTGCTGAGCCTGCTCACAgtatgtggctggggacactggtgggatatgcatctgccataactgtatga #### Rasgrp2_ID1710_9 --> 0 - 0 Original Alignment GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct Alignment from CESAR GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct Alignment from Spaln_aa2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct Alignment from Spaln_nt2Genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct Alignment from Pairagon GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct Alignment from Exonerate_protein2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct Alignment from Exonerate_coding2genome GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct Alignment from GeneWise GTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCACTGCAGCGAGAGCCACGCTCCAAGTCGTCG agcaaaaaagaaacattagagggtgtgactttatgtcttttatttcacagGTGTCCCTGGATCAGTATCAGACAGAGGATGAGCTGTACCAGCTCTCATTACAGCGGGAGCCATGCTCCAAGTCATGGgttagttagcccgtccatctccccattgcagcactttatcttcctgggct #### Rbm20_ID11379_6 --> 0 - 0 Original Alignment TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag Alignment from CESAR TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag Alignment from Spaln_aa2Genome TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag Alignment from Spaln_nt2Genome TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag Alignment from Pairagon TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag Alignment from Exonerate_protein2genome TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag Alignment from Exonerate_coding2genome TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag Alignment from GeneWise TTTGCAGCACAGAGGAAAGGCGCTGGACGGGTAGTGCACATCTGCAATCTCCCGGAGGGCAGCTGCACGGAGAATGACGTCATTAACCTGGGGCTGCCCTTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAG ggaaaattgctaaccaaagttgttactcacacctgaatttcttttcccagTTTGCAGCACAGAGGAAGGGTGCTGGACGAGTAGTCCATATCTGCAATCTCCCAGAGGGCAGTTGCACGGAGAATGATGTCATTAACCTCGGGCTGGCATTTGGCAAGGTCACTAATTACATCCTCATGAAGTCAACTAATCAGgtgggccccctcccagtccctctgtgaagtatgtgaggggctctgttcag #### Rbm20_ID11380_7 --> 0 - 0 Original Alignment GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg Alignment from CESAR GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg Alignment from Spaln_aa2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg Alignment from Spaln_nt2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg Alignment from Pairagon GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg Alignment from Exonerate_protein2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg Alignment from Exonerate_coding2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg Alignment from GeneWise GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgtcagccttctgaacaatcatctcacaataacattttttttttttttagGCGTTCTTGGAGATGGCCTACACAGAAGCTGCCCAAGCTATGGTACAATATTACCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTACAAGGAACTGCAGCTGAAGgtgagttgccctctcactcatccattcaagaacccttcatctgtttgtcg #### Rbm20_ID11381_8 --> 0 - 2 Original Alignment AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACag cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACaggtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct Alignment from CESAR AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACag cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACaggtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct Alignment from Spaln_aa2Genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACAGgtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct Alignment from Spaln_nt2Genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACAGgtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct Alignment from Pairagon AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACAGgtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct Alignment from Exonerate_protein2genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACAGgtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct Alignment from Exonerate_coding2genome AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACAGgtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct Alignment from GeneWise AAACCTGGGAAAAATGTGGCTGCTATCATCCAAGACATCCATTCCCAGAGGGAGAGGGACATGCTCCGGGAAGCTGACAG cagttctaataactgtgatgatgtctaacctttcttatttcaaaattcagAAACCTGGAAAAAATGTGGCAGCAATCATCCAAGATATCCATTCCCAGAGGGAGAGGGACATGCTGCAGGAGGCGGACAGgtaaatctctgtgttacactcagatctgatgccttgaggttaaaacacct #### Rbm20_ID11383_10 --> 0 - 0 Original Alignment GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct Alignment from CESAR GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct Alignment from Spaln_aa2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct Alignment from Spaln_nt2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct Alignment from Pairagon GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct Alignment from Exonerate_protein2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct Alignment from Exonerate_coding2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct Alignment from GeneWise GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttctggccttatttgcttcctgctttctgctatgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGGACAAAGAAAgtaaggttgtaccctcttcgtgctgatggtgtcataaatcagcgtcagct #### Rbm20_ID11385_11 --> 0 - 1 Original Alignment GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAg atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAggtagtggggcttagtgcagcttccttcatctcctttataggtcacattat Alignment from CESAR GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAg atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAggtagtggggcttagtgcagcttccttcatctcctttataggtcacattat Alignment from Spaln_aa2Genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAGgtagtggggcttagtgcagcttccttcatctcctttataggtcacattat Alignment from Spaln_nt2Genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAGgtagtggggcttagtgcagcttccttcatctcctttataggtcacattat Alignment from Pairagon GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAGgtagtggggcttagtgcagcttccttcatctcctttataggtcacattat Alignment from Exonerate_protein2genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAGgtagtggggcttagtgcagcttccttcatctcctttataggtcacattat Alignment from Exonerate_coding2genome GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAGgtagtggggcttagtgcagcttccttcatctcctttataggtcacattat Alignment from GeneWise GGACAAGACTGTGACAGTGGGAGTGAACCCGAGGGGGACAACTGGTACCCCACCAACATGGAGGAGTTGGTCACAGTGGACGAAGTAGGCGAGGAAGATTTCATCATGGAACCAGACTTACCAGAGCTGGAAGAAATTGTGCCTATTGACCAGAAAGACAAAACCCTCCCTAAAATATGTACCTGTGTAACGGCCACCTTAGGTTTGGACTTGGCCAAAGATTTCACCAAGCAGGGAGAGACCCTAGGGAACGGAGACGCAGAACTCAGCCTGAAGCTGCCCGGACAAGTGCCGTCTACTTCCGCAAGCTGTCCCAATGACACGGACCTGGAGATGCCTGGCCTAAATCTGGATGCTGAGCGGAAGCCAGCTGAAAGCGAGACAGGCCTCTCACTGGAGGTCTCAAATTGCTACGAGAAGGAGGCAAGAGGAGAGGAGGACTCAGATGTGAGTCTGGCCCCTGCAGTGCAGCAAATGTCCTCCCCCCAGCCAGCAGATGAGCGGGCCCGGCAGTCCAGCCCTTTTCTCGATGACTGCAAGGCCAGGGGGTCCCCAGAAGATGGGTCTCATGAAGCCAGCCCCCTGGAAGGAAAAGCCAGCCCACCTACTGAAAGCGACCTCCAAAGCCAGGCTTGCCGAG atttaaatacttaatcctccatgtgatacaataatgcccttcctgtccagGGACAGGACTGTGACAGTGGGAGTAAACCGGAGGGGGACAATTGGTACCCCACAAACATGGAGGAGTTGGTCACAGTGGATGAAATAGGTGAGGAGGATTTCATAATGGAACCAGAATTACCAGAATTGGAAGAAATTGTGCCTATTGACCAAAAAGACAAAACACTTGCTAAAATATGCACCTGTGTGACAGCCACCTTAGGTTTGGACCTGGCCAAAGATTTCACCAAGCAGGGAGAGGCCATAGGAAATGGAGATGCAGAACTCAGCCTGAAGTTGCCTGGACAAGTGCCATCTACTTCTGCAAGTTGTCCCAATGATAGAGACCTGGAGATGCCTGGTTTGAATCTGGATGCTGAGCGGAAGCCAGCAGAAAGTGAGACAGGCCTCTCGCTGGAGGTATCAAATTGCTATGGGAAAGAGGCCAGGGGAGAAGAGGACTCAGATGTGAGTTTGGCCCCTGCAGTGCAGCGAATGTCATCCCCCCAACCAGCAGATGAACGTGCACGGCAGTCCAGCCCTTTTCTTGATGACTGCAAGGCCAGGGGGTCACCAGAGGACGGGTCTCATGAAGCAAGCCCTTTGGAAGGAAAAGCTAGCCCACCTACTGAAAGTGACCTCCAAAGTCAGGCTTGCCGAGgtagtggggcttagtgcagcttccttcatctcctttataggtcacattat #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACT------TGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACT------TGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Exonerate_coding2genome aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagggcagtctccgaggtgaaatggcatgggtgtgggcacttgtgctcctgtcagctctgggaggtggcagtgcagagcatgacttgagcagctttcgagttaaagaaaactttgacaaggctcatgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagccCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagtctacacacatatgttcttgtccagccCATTTTCACCACATTATT Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagccCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagcctttgttgttttttcctatcacagccCATTTTCACCACATTATT Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGGTGAGTCTACACACATATGTTCTTGTCCAGCCCATTTTCACCACATTATT Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGG----GgttggtgagtctacacacatatgttcttgtccagCCCATTTTCACCACATTATT Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctacacacatatgttcttgtccagCCCATTTTCACCACATTATT Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctacacacatatgttcttgtccagCCCATTTTCACCACATTATT Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctacacacatatgttcttgtccagCCCATTTTCACCACATTATT Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGGTGAGTCTACACACATATGTTCTTGTCCAGCCCATTTTCACCACATTATT #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from CESAR CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Pairagon CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga #### Rcl1_ID6214_4 --> 0 - 0 Original Alignment GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta Alignment from CESAR GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta Alignment from Spaln_aa2Genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta Alignment from Spaln_nt2Genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta Alignment from Pairagon GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta Alignment from Exonerate_protein2genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta Alignment from Exonerate_coding2genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta Alignment from GeneWise GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG ttaattacatgtccaaagttgttctggatctcactgtcatctgtcctcagGCTGATGTTATTAAAGCAACAGCTCTCCCTCTACTGAAACAGTTTGGGATCGACGGAGACTCATTTAAGCTTAAGgtacgtatgtttggagatgaatccaaaccttggacggatgcagctcttta #### Rcl1_ID6217_6 --> 1 - 2 Original Alignment gTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGaa tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcaggTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGaagtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc Alignment from CESAR gTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGaa tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcaggTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGaagtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc Alignment from Spaln_aa2Genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGAAgtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc Alignment from Spaln_nt2Genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGAAgtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc Alignment from Pairagon GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGAAgtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc Alignment from Exonerate_protein2genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGAAgtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc Alignment from Exonerate_coding2genome GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGAAgtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc Alignment from GeneWise GTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCCGCAAGGAGCATCCTCAACAAGTTCATACCTGACATCTACATCTACACGGATCACATGAAAGGCGTCAGTTCTGGGAA tcaccatcatggtaccccacattaccgacatgtttcaattatctttgcagGTACTCAGTTCGTGTATCACCTCAGATGGCAAACCGGATCGTGGATTCTGCAAGGAGCATCCTCAATAAGTTCATACCTGACATCTACATCTACACAGATCACATGAAAGGCGTCAGTTCTGGGAAgtgagtgcccttcagagcagcctggaggacagccaaaagtggccaagctc #### Rcor2_ID2097_8 --> 0 - 0 Original Alignment GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg Alignment from CESAR GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg Alignment from Spaln_aa2Genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg Alignment from Spaln_nt2Genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg Alignment from Pairagon GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg Alignment from Exonerate_protein2genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg Alignment from Exonerate_coding2genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg Alignment from GeneWise GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGCGGCATTGACCCTCTCCGCCCCCCTGAG acttggccttcatgggatgcatactctgcatttgatttttctgtttatagGTCCAGAGTATGAAGCAGACCAATAGCAGTCTCCAGCAAGCACTGGAGGGTGGCATTGACCCCCAACGGCCCCCAGAGgtaacagattatatctgttagatgccggaagatagcaccagtgatgctgg #### Rela_ID1129_6 --> 2 - 1 Original Alignment ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagttCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACcgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from CESAR ttCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACc ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagttCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACcgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Spaln_aa2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Spaln_nt2Genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Pairagon TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Exonerate_protein2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from Exonerate_coding2genome TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg Alignment from GeneWise TTCCTATAGAGGAGCAGCGCGGGGACTATGACTTGAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGCAGGCCCCTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACC ttaccacagtgttctgtgtgttctttttgcttcctttggcttccttttagTTCCCATGGAGGAGCAGCATGGGGACTATGACTTAAATGCAGTGCGCCTCTGCTTCCAGGTGACAGTGCGGGACCCAGCAGGTGGGCCACTCCTCCTGACCCCTGTCCTCTCACATCCGATTTTTGATAACCgtatggggctagctgagtagggatgcaggaagtcaaagtatttcttctcg #### Rfx3_ID5875_15 --> 0 - 1 Original Alignment TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAggtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg Alignment from CESAR TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAg tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAggtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg Alignment from Spaln_aa2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg Alignment from Spaln_nt2Genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg Alignment from Pairagon TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg Alignment from Exonerate_protein2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg Alignment from Exonerate_coding2genome TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg Alignment from GeneWise TTTGGCGATTTAAATGCTGTATCTCCCGGAAATCTGGATAAAG tgtctatcttgctagtaataaccactactttcttctcatctactctctagTTTGGTGATTTAAATGCTGTATCTCCTGGAATTCTAGATAAAGgtgtgcaaaattctgaatatctttttggttgaactcatctgggagtggtg #### Rfx3_ID5884_11 --> 2 - 0 Original Alignment gtGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattataggtGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc Alignment from CESAR gtGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattataggtGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc Alignment from Spaln_aa2Genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattatagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc Alignment from Spaln_nt2Genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattatagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc Alignment from Pairagon GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattatagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc Alignment from Exonerate_protein2genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattatagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc Alignment from Exonerate_coding2genome GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattatagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc Alignment from GeneWise GTGCCTTGACCCAAGCCATTCGAAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATTCCACAGAGAATGATTCAAACCAAG aatagtgttgcatatctttcctgttccacttttttctttcttcattatagGTGCCTTGACCCAAGCCATTCGGAATTTCGCAAAAAGCCTAGAAGGTTGGCTTTCAAATGCCATGAACAATATCCCACAGAGAATGATCCAAACCAAGgtaggatcgatcttttgtgtgtgcagatgagtgtgcttaaggaattattc #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaagatggctt Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaactttatgc Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaagatggctt Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaagatggctt Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaagatggctt Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaagatggctt Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaagatggctt Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaagatggctt #### Rin1_ID814_9 --> 2 - 0 Original Alignment gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctaggaGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCAC---CCA---ACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag Alignment from CESAR gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctaggaGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCAC------CCAACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag Alignment from Spaln_aa2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctagGAGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCAC------CCAACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag Alignment from Spaln_nt2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctagGAGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCACC------CAACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag Alignment from Pairagon GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctagGAGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCACC------CAACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag Alignment from Exonerate_protein2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctagGAGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCAC------CCAACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag Alignment from Exonerate_coding2genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctagGAGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCAC------CCAACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag Alignment from GeneWise GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG ggtagttctgatataccagccctagcaggtttttttcactgcatttctagGAGGCTACTATTTAACCAGCCTTTCAGCCAGACTGGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCCGCACAGAAGCTCCAGCGCTCCCTCGCCCTCTGGGAACAGCGGCAC------CCAACCCCCAGCTTTCAAgtaatgactccttcccgactagttgcccccatttaccttggccagtacag #### Rorb_ID4537_5 --> 2 - 0 Original Alignment atCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagatCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca Alignment from CESAR atCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagatCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca Alignment from Spaln_aa2Genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagATCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca Alignment from Spaln_nt2Genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagATCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca Alignment from Pairagon ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagATCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca Alignment from Exonerate_protein2genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagATCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca Alignment from Exonerate_coding2genome ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagATCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca Alignment from GeneWise ATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAACTCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAG accatctagaaagttatttaaactaaaatgtcttctctctgtatttttagATCGAGTAGCACAGAACATCATTAAGTCCCATTTAGAAACATGTCAGTACACTATGGAAGAACTCCACCAGCTTGCATGGCAGACCCACACCTACGAGGAAATTAAGGCATACCAAAGCAAGgtaaggcaagatcagtggtaaacagatcaaccttagtgttaccggtctca #### Rorb_ID4544_4 --> 2 - 1 Original Alignment ctGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCg attaaacatggtccccacactttagtctaactctggctccctccttccagctGTAAAGTTTGGGAGGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTggtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta Alignment from CESAR ctGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCg attaaacatggtccccacactttagtctaactctggctccctccttccagctGTAAAGTTTGGGAGGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTggtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta Alignment from Spaln_aa2Genome CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG attaaacatggtccccacactttagtctaactctggctccctccttccagCTGTAAAGTTTGGGAGGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTGgtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta Alignment from Spaln_nt2Genome CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG attaaacatggtccccacactttagtctaactctggctccctccttccagCTGTAAAGTTTGGGAGGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTGgtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta Alignment from Pairagon CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG attaaacatggtccccacactttagtctaactctggctccctccttccagCTGTAAAGTTTGGGAGGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTGgtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta Alignment from Exonerate_protein2genome CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG attaaacatggtccccacactttagtctaactctggctccctccttccagCTGTAAAGTTTGGGAGGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTGgtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta Alignment from Exonerate_coding2genome CTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG attaaacatggtccccacactttagtctaactctggctccctccttccagCTGTAAAGTTTGGGAGGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTGgtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta Alignment from GeneWise GATGTCCAAGAAGCAGCGGGACAGCCTGTATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGCCCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACATACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGTCTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCACATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCTGAGATCG attaaacatggtccccacactttagtctaactctggctccctccttccagctgtaaagtttgggagGATGTCTAAGAAGCAGCGAGACAGCTTGGATGCTGAGGTGCAAAAGCATCAGCAACGGCTTCAGGAGCAACAACAACAAAGGAGTGGAGAGGCAGAAGCCCTAGCCAGGGTGTATAGTAGCAGTACTAGCAACAGCCTCAGCAACCTGAACACTGAGACCGGTGGCATATATGCCAATGGCCATGTCATTGACTTGCCCAAGTCTGGAGGTTAT------ATAGACTCAGGTCAGCCCTCTCCTGACCAGTCAGGCCTGGACATGACTGGAATCAAACAGACAAAGCAAGATCCCATTTATGACCTCTCATCAGTACCTAATTTGTTTACCTATAGCTCTTTCAACAATGGGCAGTTAGCTCCTGGGATAACAATGTCTGAGACTGgtaatcttgcatttttaacaagtttcatttcaggaaattggttgcatgta #### Rorb_ID4545_3 --> 0 - 1 Original Alignment GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATg actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATggtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc Alignment from CESAR GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATg actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATggtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc Alignment from Spaln_aa2Genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATGgtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc Alignment from Spaln_nt2Genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATGgtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc Alignment from Pairagon GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATGgtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc Alignment from Exonerate_protein2genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATGgtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc Alignment from Exonerate_coding2genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATGgtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc Alignment from GeneWise GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG actacttccaaatctactacacttgcttcaaatttcttctttatttttagGGCTTCTTCAGGAGGAGTCAGCAAAATAATACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTTGGAATGTCAAGAGATGgtgagtctttccttttttgctgcctgggaacttctaaatggatgatttgc #### Rorb_ID4547_2 --> 2 - 0 Original Alignment caCAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagccCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta Alignment from CESAR caCAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagccCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta Alignment from Spaln_aa2Genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta Alignment from Spaln_nt2Genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta Alignment from Pairagon CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta Alignment from Exonerate_protein2genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta Alignment from Exonerate_coding2genome CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta Alignment from GeneWise CACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAGTCATCACGTGTGAAGGCTGCAAG taattttacagaccagactacaagcttttttttttttttttaaaaaacagCCCAAATTGAGGTGATACCATGCAAAATTTGTGGTGATAAATCCTCTGGGATCCATTTTGGAGTCATCACATGTGAAGGCTGCAAGgtgagagtcctcacattggtgagtggacataaaaaaacctatgcaattta #### Rpp30_ID7088_8 --> 0 - 0 Original Alignment AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgctattgatcatctaagattttccctgctcatgagctggtactcctagAATGTAATTCTGTCAAGTACTGCAGAGAGAgtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa Alignment from CESAR AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgctattgatcatctaagattttccctgctcatgagctggtactcctagAATGTAATTCTGTCAAGTACTGCAGAGAGAgtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa Alignment from Spaln_aa2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgctattgatcatctaagattttccctgctcatgagctggtactcctagAATGTAATTCTGTCAAGTACTGCAGAGAGAgtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa Alignment from Spaln_nt2Genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgctattgatcatctaagattttccctgctcatgagctggtactcctagAATGTAATTCTGTCAAGTACTGCAGAGAGAgtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa Alignment from Pairagon AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgctattgatcatctaagattttccctgctcatgagctggtactcctagAATGTAATTCTGTCAAGTACTGCAGAGAGAgtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa Alignment from Exonerate_protein2genome AATGTAATTCTGTCCAGTGCTGCAGAAAGG atgctattgatcatctaagattttccctgctcatgagctggtactcctagAATGTAATTCTGTCAAGTACTGCAGAGAGAgtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa Alignment from Exonerate_coding2genome atgctattgatcatctaagattttccctgctcatgagctggtactcctagaatgtaattctgtcaagtactgcagagagagtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa Alignment from GeneWise atgctattgatcatctaagattttccctgctcatgagctggtactcctagaatgtaattctgtcaagtactgcagagagagtaagtatatggcaactcttatagctgcggttaggtttcctaaggtgtaa #### Rpp30_ID7090_10 --> 1 - 1 Original Alignment aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagaGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAggtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt Alignment from CESAR aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagaGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAggtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt Alignment from Spaln_aa2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt Alignment from Spaln_nt2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt Alignment from Pairagon AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt Alignment from Exonerate_protein2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt Alignment from Exonerate_coding2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt Alignment from GeneWise AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcatagactttgtgtactttcttgaactttcaattttagAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCAGCCGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgtgcaatatgttattttcagcagaattcttatccgcatatcttctagt #### Rrp12_ID8293_30 --> 2 - 0 Original Alignment ggGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagggGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca Alignment from CESAR ggGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagggGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca Alignment from Spaln_aa2Genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagGGGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca Alignment from Spaln_nt2Genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagGGGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca Alignment from Pairagon GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagGGGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca Alignment from Exonerate_protein2genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagGGGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca Alignment from Exonerate_coding2genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagGGGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca Alignment from GeneWise -----GATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT catcttggctcctcgctcatgacctccttcttttcctaaccccggcccagGGGCAGATGAAGATATGACTGATGCAATGGAGGATGCCAGTGTAAGAAGTgtaagaaattttcccagctgatccaatagcacccataccaaatgagtaca #### Rrp12_ID8297_26 --> 0 - 2 Original Alignment ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTgggtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg Alignment from CESAR ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTgg taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTgggtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg Alignment from Spaln_aa2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg Alignment from Spaln_nt2Genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg Alignment from Pairagon ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg Alignment from Exonerate_protein2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg Alignment from Exonerate_coding2genome ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg Alignment from GeneWise ATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGAAGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGG taatgacagatgggcgaggtggttagtgtaatccttgttgtgctttgtagATGGAAGCCATTGGGAAACTGTCAGATGACATGCGACGGCACTTCCGGATGAAACTCCGGAATCTGTTCATCAAGTTCACCCGCAAGTTTGGgtaaattcagggtggagaatgaaacctggggtctcttcagagccttaggg #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga #### Rrp12_ID8302_21 --> 0 - 0 Original Alignment AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from CESAR AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Spaln_aa2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Spaln_nt2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Pairagon AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Exonerate_protein2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Exonerate_coding2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from GeneWise AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagaTTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagaTTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagATTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagATTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagATTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagATTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagATTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG cactgagaaagaaggaatcactttgtccttatttatttatttatttatagATTGTCTGTTCTGGATCTGGTTGTGGCTTTGGCTCCTTATTCGGATGAAGCTGCTAGCAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgggttatccctgtctccgttcatggtatgatatgcctagatttcaccc #### Rrp12_ID8306_17 --> 0 - 1 Original Alignment ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAggtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta Alignment from CESAR ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAggtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta Alignment from Spaln_aa2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAGgtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta Alignment from Spaln_nt2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAGgtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta Alignment from Pairagon ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAGgtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta Alignment from Exonerate_protein2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAGgtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta Alignment from Exonerate_coding2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAGgtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta Alignment from GeneWise ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caaggggtggagcatgtctatgaggcgtgcttctgcacccccccccccagATCTGGACCCTTCAGCCTGGGTTCTGCACTAGGCCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTTAGTGTTTGCCAGGCCCTACGCACCCTCATCACTAAGGGCTGTGAGGCAGgtaggtaggatgcctgttggtgagatgacctggaatgccgccatgctcta #### Rrp12_ID8309_14 --> 0 - 2 Original Alignment TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTga tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTgagtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac Alignment from CESAR TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTga tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTgagtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac Alignment from Spaln_aa2Genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTGAgtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac Alignment from Spaln_nt2Genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTGAgtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac Alignment from Pairagon TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTGAgtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac Alignment from Exonerate_protein2genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTGAgtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac Alignment from Exonerate_coding2genome TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTGAgtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac Alignment from GeneWise TGCCTCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGGGGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGA tattaaaccctgactccaccatcacatttcttggtgccctctctccctagTGCCTCCAGTCCCTGTGTGATCTGCGCCTCTCTCCTCACTTCCCTTATACAGCAGCCCTGGACCAGGCGGTGGGGGCTGCAGTGACCAGTATGGGTCCCGAGGTGGTGTTGCAGGCTGTCCCCTTGGAAATTGATGGCTCTGAgtgcgtgtgaacatacttggctctttcttggcttctggaggcagggatac #### Rrp12_ID8312_11 --> 1 - 0 Original Alignment gCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccaggTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc Alignment from CESAR gCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccaggTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc Alignment from Spaln_aa2Genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccagGTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc Alignment from Spaln_nt2Genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccagGTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc Alignment from Pairagon GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccagGTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc Alignment from Exonerate_protein2genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccagGTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc Alignment from Exonerate_coding2genome GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccagGTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc Alignment from GeneWise GCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACCGCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAG gtttgaatgggagtgaacattattagtgcattcttatcatcaattaccagGTTGCAGCAAGACCTGGGGCTCGGACATCTTGCTCGATTTTTCGGAACTGCAGTGACATGTCTTCTCTCACCTCATTCACAAGTTGCAGCAGCTGCTACCCAAACTCTCAAGgtgagtctgcttatctgagtctgccaatttgtctccctggtgttgttagc #### Rrp12_ID8313_10 --> 0 - 2 Original Alignment GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAaggtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from CESAR GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAaggtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Spaln_aa2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Spaln_nt2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Pairagon GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Exonerate_protein2genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from Exonerate_coding2genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt Alignment from GeneWise GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG acatgtgggatcctgctgactgaaactatccactctgaccctgaccctagGCATTATATGACTATGTTCCCAGTGAGAATGATCTACGGTCCCTGTTAGCCTGGCTTAAGGTCATGGAGAAAGCTCACATCAACTTGGTAAGgtgagtctagtggatgtcagtgtaggatccccctataggttatttgtggt #### Rrp12_ID8315_8 --> 2 - 0 Original Alignment gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcaggtTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca Alignment from CESAR gtTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcaggtTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca Alignment from Spaln_aa2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca Alignment from Spaln_nt2Genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca Alignment from Pairagon GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca Alignment from Exonerate_protein2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca Alignment from Exonerate_coding2genome GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca Alignment from GeneWise GTTCCAAAGAGGCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG ttagtgggtaagcaggagtagtctagaataacatatgtcttcctccgcagGTTCCAAAGAGGCCACAACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCAGAAGGTCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGAGTAATGACTTTGAACCCTGTGgtgacagctagaaacaggaggaaggggaaattaagtgagtgaggggccca #### Rrp12_ID8317_6 --> 0 - 0 Original Alignment GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga Alignment from CESAR GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga Alignment from Spaln_aa2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga Alignment from Spaln_nt2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga Alignment from Pairagon GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga Alignment from Exonerate_protein2genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga Alignment from Exonerate_coding2genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga Alignment from GeneWise GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gacccttgctgtggctgatcaccatatttacatgtgctctttctttgtagGTCCTCTCTTGCCTGGCCATCTTTCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtaagactcgagctgctttagaacataccaacatacccatctgagctgga #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAggtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAggtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aataatcttgctatagtttctggtcttacctttgctctgtcctttcccagCAAAAACCTCGCTCAATTCTGGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGAATGGCTGATGGACTGAGGGAACAAGAGCTGGAAGAAATCCGCACCAAGCTACGACTGCCAGCCCAGTCTCTAAGTTCCATGGGCCCCAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtaggccaccaatttgtgatggcatattcagccgacagctaatccaagca #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct #### Sart1_ID973_2 --> 2 - 2 Original Alignment ctGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCaa gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagctGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCaagtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg Alignment from CESAR ctGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCaa gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagctGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCaagtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg Alignment from Spaln_aa2Genome CTGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCAA gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagCTGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCAAgtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg Alignment from Spaln_nt2Genome CTGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCAA gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagCTGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCAAgtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg Alignment from Pairagon CTGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCAA gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagCTGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCAAgtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg Alignment from Exonerate_protein2genome CTGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCAA gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagCTGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCAAgtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg Alignment from Exonerate_coding2genome CTGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCAA gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagCTGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCAAgtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg Alignment from GeneWise CTGCCAGCTCCAAAGCCAGCTCTGGCGATGCCTCATCCCTCAGCATTGAGGAGACCAA gtttctttcctggttgtggatccctaagttttattgtcctttcttcacagCTGCCAGCTCCAAAGCCCACTGTGGAGATGCCTCATCCTTCAGCATTGAGGAGACCAAgtaatggtaaaattcttacctttagagtctggcttactcagagaaagggg #### Scd1_ID9002_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGg tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGggtaagttgctgaattgttatttattttttttcgaggacctgttttatgag Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGg tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGggtaagttgctgaattgttatttattttttttcgaggacctgttttatgag Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGGgtaagttgctgaattgttatttattttttttcgaggacctgttttatgag Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGGgtaagttgctgaattgttatttattttttttcgaggacctgttttatgag Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGGgtaagttgctgaattgttatttattttttttcgaggacctgttttatgag Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGGgtaagttgctgaattgttatttattttttttcgaggacctgttttatgag Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGGgtaagttgctgaattgttatttattttttttcgaggacctgttttatgag Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcagttcatgagctgtctctccagacctatcattgttcttgcctgcagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTGGTACCCTGGTACTGCTGGGGTGAAACTTTTGTAAACAGCCTGTTTGTTAGCACCTTCTCGCGATACACTTTGGTGCTTAATGCAACTTGGCTGGTGAATAGTGCTGCACATCTCTATGGATATCGTCCTTATGTTAAGAACATTCAATCTCGGGAGAATATCCTGGTTCCCCTAGGTGCTGTGGgtaagttgctgaattgttatttattttttttcgaggacctgttttatgag #### Scd2_ID8988_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGaggtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGaggtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGAGgtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGAGgtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGAGgtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGAGgtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGAGgtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG ttcccctttgcaatgcttagcccccatgatagaattttattcttttacagAATGATGTTTATGAATGGGCACGAGATCACCGTGACCACCACAAGTTCTCAGAAACACATGCCGACCCTCACAATTCCCACCGTGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTAGATATGTCTGCCCTGAAAGCTGAGGAACTAGTGATGTTCCAGAGGAGgtaagttctaagccaaggctaacactatgaaaatgaaaaggtactagggg #### Scd2_ID8989_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcaggTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTggtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcaggTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTggtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcagGTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcagGTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGC---CCTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcagGTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGC---CCTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcagGTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcagGTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG agacaatgtcattcatgcagctcctattaccagggatgtgtggtccgcagGTACTACAAACCTGGCCTCTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACTTTTGTAAACAGCCTGTGTATTAGCACCTTCTTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTACGGATATCGCCCCTTTGACAAGAACATAAGCTCGCGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtgagttccgacagtgggacaaaaccaccatcttagggctctggatacaa #### Scd3_ID8973_2 --> 0 - 1 Original Alignment ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg gcaccatagtattaaaggggattgacttcccttgttttcctctcccaaagATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGAAGA---GAAGTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTggtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac Alignment from CESAR ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg gcaccatagtattaaaggggattgacttcccttgttttcctctcccaaagATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGAAGAGAA---GTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTggtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac Alignment from Spaln_aa2Genome ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattaaaggggattgacttcccttgttttcctctcccaaagATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGAAGAGAA---GTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTGgtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac Alignment from Spaln_nt2Genome ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattaaaggggattgacttcccttgttttcctctcccaaagATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGA--AGAGAA-GTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTGgtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac Alignment from Pairagon ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattaaaggggattgacttcccttgttttcctctcccaaagATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGAAGAG---AAGTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTGgtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac Alignment from Exonerate_protein2genome ATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattaaaggggattgacttcccttgttttcctctcccaaagATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGAAGAGAA---GTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTGgtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac Alignment from Exonerate_coding2genome GAGATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattaaaggggattgacttcccttgttttcctctcccaAAGATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGAAGAGAA---GTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTGgtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac Alignment from GeneWise CCAGGGCACCTGCTGCAAGAAGAGATGACGCCTTCGTACACGACCACCACCACCATCACAGCGCCTCCCTCTGGAAGCCTGCAGAATGGACGAGAGAAGGTGAAGACGGTGCCCCTCTACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATATACGACCCCACCTATCAGGATGAGGAGGGGCCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGCCCTGCTGCACGTGGGAGCCCTGTACGGGATCACACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG gcaccatagtattaaaggggattgacttcCCTTGTTTTCCTCTCCCAAAG---ATGACCCCTTCATATACAACCACCACCACCATCACAGCACCTCCTTCCGGAAGCCTGCAGAATGGAAGAGAA---GTGAAAACAGTGCCTCTTTACCTGGAGGAAGACATTCGTCCTGAAATGAGGGAAGATATATATGACCCCACTTACCAGGATGAGGAGGGTCCCCCACCCAAGCTAGAGTATGTCTGGAGGAATATCATCCTCATGGCGCTGCTACATGTTGGTGCTCTCCACGGAATTCCACTGGTTCCATCTTGCAAGCTCCATACCTGCCTCTTTGgtaggtacattttgctgtcttgggttagtgagtgtaactgttacttccac #### Scd4_ID8997_5 --> 1 - 1 Original Alignment gTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAg tatgcctgtgggctctccatgcacttctctaactgagagtctccctttaggTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGggtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat Alignment from CESAR gTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAg tatgcctgtgggctctccatgcacttctctaactgagagtctccctttaggTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGggtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat Alignment from Spaln_aa2Genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG tatgcctgtgggctctccatgcacttctctaactgagagtctccctttagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGGgtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat Alignment from Spaln_nt2Genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG tatgcctgtgggctctccatgcacttctctaactgagagtctccctttagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGGgtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat Alignment from Pairagon GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG tatgcctgtgggctctccatgcacttctctaactgagagtctccctttagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGGgtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat Alignment from Exonerate_protein2genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG tatgcctgtgggctctccatgcacttctctaactgagagtctccctttagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGGgtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat Alignment from Exonerate_coding2genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG tatgcctgtgggctctccatgcacttctctaactgagagtctccctttagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGGgtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat Alignment from GeneWise GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG tatgcctgtgggctctccatgcacttctctaactgagagtctccctttagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATCCCTTTGTCTCAATGGCATCATTGGgtaaggcttcagcttgctgtatatatctccaacacatatcaaagctccat #### Sdhaf2_ID2856_2 --> 0 - 2 Original Alignment GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTag gtaacactagccattgtctaacaggaattatatttattactgcaatccagGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTaggtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca Alignment from CESAR GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTag gtaacactagccattgtctaacaggaattatatttattactgcaatccagGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTaggtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca Alignment from Spaln_aa2Genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagccattgtctaacaggaattatatttattactgcaatccagGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca Alignment from Spaln_nt2Genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagccattgtctaacaggaattatatttattactgcaatccagGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca Alignment from Pairagon GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagccattgtctaacaggaattatatttattactgcaatccagGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca Alignment from Exonerate_protein2genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagccattgtctaacaggaattatatttattactgcaatccagGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca Alignment from Exonerate_coding2genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagccattgtctaacaggaattatatttattactgcaatccagGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca Alignment from GeneWise GCGGTGGTCACCTTGATCCCGACGCTGGCGCGGGCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagccattgtCTAACAGGAATTATATTTATTACTGCAATCCAGGCACTATCAAAGCATAGTCTGCTATCTCCCTTGCCTAGTGTGACATCATTCAGACGTTTCTACAGAGGTGACAGCCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCTCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCCCGATTACTCTATGAGAGCAGGAAGAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtactgagcagctctgggtgtcactcttgtttgatgacaaagccctgtca #### Sec31b_ID9034_18 --> 0 - 0 Original Alignment CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAGGCT------TTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg Alignment from CESAR CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg Alignment from Spaln_aa2Genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg Alignment from Spaln_nt2Genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg Alignment from Pairagon CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg Alignment from Exonerate_protein2genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg Alignment from Exonerate_coding2genome CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAG------GCTTTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg Alignment from GeneWise CCAGGAGTTCAGCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGTTCTGCCGTCTTAGGCCAACAGGCTCCTGCTTTCCCTTTCCCCCGAGTTGCTGTAGGAGCTGCCCTCCACTCCAAAGAGACATCGTCATACAGAAGGGGGCTCCAGCCTCCTCAGCAG aagagtacaccagcagctaacctagctctattaaactgtgactaacttagCCAGGAGTTCTCCAGCTGAGAGATCGGCTTTTTCATGCCCAAGGCTCTGCCATTTTAGGACAGCAGGCT------TTCCCTTTCCCCCGGGTTGCTGTTGGAGCTTCCCTCCACTCCAAAGAGACATCATCATACAAAAGGGGTCTCCAGCGTCCTCAGCAAgtacattcttctttgttaagaatattagtctgttctctattattttcatg #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAggtatgctgatcctgggaaagaggatataactgtataggggtaattgggta Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAg cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAggtatgctgatcctgggaaagaggatataactgtataggggtaattgggta Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtatgctgatcctgggaaagaggatataactgtataggggtaattgggta Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtatgctgatcctgggaaagaggatataactgtataggggtaattgggta Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtatgctgatcctgggaaagaggatataactgtataggggtaattgggta Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtatgctgatcctgggaaagaggatataactgtataggggtaattgggta Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtatgctgatcctgggaaagaggatataactgtataggggtaattgggta Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAGATCCCCACCACAGAAG cttaagtgcttcacttcacatatgatcactcattcttcctctcacctcagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAGAACATGACCCCCTGGGTGATCCCCACTACAGAAGgtatgctgatcctgggaaagaggatataactgtataggggtaattgggta #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Spaln_nt2Genome AGGTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacAGGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag Alignment from GeneWise ---GTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtggcccctgacatctgttccttactgacccctacccctctcacagGTAGTCTACAAGTTGCCCACACAGAGTAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGTTGGGAAGCCCAGCATATGAGGCAGGCTGATAAGgtggggagcaattgtttgagagtgttgggggggggagctgtttatgagag #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctaatagtgcatgccctatctctaagggttttcttcccttcctagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGAAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtatgtatagagtgcttaggaggggttgggggagggggcagctcccttct #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag #### Sf1_ID1668_9 --> 1 - 0 Original Alignment gCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcaggCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag Alignment from CESAR gCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcaggCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag Alignment from Spaln_aa2Genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcagGCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag Alignment from Spaln_nt2Genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcagGCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag Alignment from Pairagon GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcagGCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag Alignment from Exonerate_protein2genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcagGCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag Alignment from Exonerate_coding2genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcagGCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag Alignment from GeneWise GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tggaaactggaacacaggtctattagtttctggttctcttcttccctcagGCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtacgtcctgaaaatcttatggtctatctcccccattcatttccacagag #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gttgatacatacaccactggtggacactattcttcctattccttgctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtaattaaggtgaccaataacccatagggcttgggcacatgggcagggac #### Sf3b2_ID913_5 --> 0 - 1 Original Alignment GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCg tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCggtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg Alignment from CESAR GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCg tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCggtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg Alignment from Spaln_aa2Genome GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCG tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCGgtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg Alignment from Spaln_nt2Genome GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCG tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCGgtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg Alignment from Pairagon GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCG tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCGgtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg Alignment from Exonerate_protein2genome GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCG tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCGgtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg Alignment from Exonerate_coding2genome GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCG tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCGgtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg Alignment from GeneWise GCAGCTGTGTTAATGGAGCAGGAACGGCAGCAGGAGATCGCCAAGATGGGCACTGCAGTCCCTCGGCCGCCTCAGGATATGGGGCAGCTGGGTGTCCGTACTCCTCTGGGGCCTCGCG tttggggctagtggcaagttcttctcgagtaatgcctgtgtttgcttcagGCAGCGGTATTAATGGAGCAGGAACGGCAGCAGGAGATTGCCAAGATGGGGACTACAGTCCCTCGACCACCTCAGGATATGGGGCAGCTGGGTGTCCATACCCCTCTGGGGCCACGCGgtgagttcctggggtggagtagtagagaagagaagagtaattaaccaagg #### Sfrp5_ID8434_2 --> 2 - 1 Original Alignment tgACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTg ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagtgACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTggtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat Alignment from CESAR tgACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTg ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagtgACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTggtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat Alignment from Spaln_aa2Genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagTGACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTGgtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat Alignment from Spaln_nt2Genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagTGACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTGgtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat Alignment from Pairagon TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagTGACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTGgtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat Alignment from Exonerate_protein2genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagTGACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTGgtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat Alignment from Exonerate_coding2genome TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagTGACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTGgtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat Alignment from GeneWise TGACCAAGATCTGTGCCCAGTGTGAGATGGAGCACAGCGCTGATGGCCTCATGGAACAGATGTGCTCCAGTGACTTTG ggtcctgttctataaggacagaaccgaattttgattcattttaacctcagTGACTAGGATCTGTGCCCAGCGTGAGATGGAGCACAGCACTGATGGCCTTATGGAACAAATGTGCTCCAGTGATTTTGgtaggtgtggaataaatgaaagcatgacctaaaaccaaccccatgtggat #### Sfxn2_ID9970_8 --> 2 - 0 Original Alignment tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagccCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct Alignment from CESAR tcCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagccCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct Alignment from Spaln_aa2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagCCCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct Alignment from Spaln_nt2Genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagCCCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct Alignment from Pairagon TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagCCCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct Alignment from Exonerate_protein2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagCCCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct Alignment from Exonerate_coding2genome TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagCCCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct Alignment from GeneWise TCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAAG cttcttggtcagcagcatacttaggtcgaccctggagtctttttctccagCCCTGTTGCCTGTCATTATGGAAAGACTAGAGAGACTACATCTGATGAAGgtcagtcgttctgctctccctgtaattcccacacacttcttctgtctgct #### Sfxn2_ID9972_10 --> 1 - 2 Original Alignment cCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAAtg agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagcCTCCTTTTTATGGCACCAGTGGCATGTGGACTTTTCCCGCAGGAAtggtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct Alignment from CESAR cCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAAtg agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagcCTCCTTTTTATGGCACCAGTGGCATGTGGACTTTTCCCGCAGGAAtggtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct Alignment from Spaln_aa2Genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagCCTCCTTTTTATGGCACCAGTGGCATGTGGACTTTTCCCGCAGGAATGgtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct Alignment from Spaln_nt2Genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagCCTCCTTTTTATGGCACCAGTGGCATGTGGACTTTTCCCGCAGGAATGgtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct Alignment from Pairagon CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagCCTCCTTTTTATGGCACCAGTGGCATGTGGACTTTTCCCGCAGGAATGgtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct Alignment from Exonerate_protein2genome CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagCCTCCTTTTTATGGCACCAGTGGCATGTGGACTTTTCCCGCAGGAATGgtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct Alignment from Exonerate_coding2genome agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagcctcctttttatggcaccagtggcatgtggacttttcccgcaggaatggtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct Alignment from GeneWise CCTCCTCTTTATGGTGCCAGTGGCGTGCGGACTCTTCCCTCAGGAATG agtaggaattctctggactgtgtgccaagcttgtctcccactctccacagCCTCCTTTTTATGGCACCAGTGGCATGTGGACTTTTCCCGCAGGAATGgtaaccactgtttgtaaccctttgcacaggactgttatatcaaataccct #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc #### Sfxn3_ID9290_8 --> 0 - 2 Original Alignment CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCtggtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta Alignment from CESAR CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCtg attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCtggtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta Alignment from Spaln_aa2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCTGgtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta Alignment from Spaln_nt2Genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCTGgtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta Alignment from Pairagon CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCTGgtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta Alignment from Exonerate_protein2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCTGgtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta Alignment from Exonerate_coding2genome CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCTGgtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta Alignment from GeneWise CGCCGTCCCTGGCTGGGGGCGCCCCTGCAGGTGGGACTGGTAGGCTTCTG attgggtaatgaagattcactaggcggctcccatctgatttattttctagGGCCGTCCCTGGCTGGGGGCACCACTGCAGGTGGGCCTGGTAGGTTTCTGgtgcgattgtaaagggtagtaggggcatacaagaatccctatgccattta #### Sfxn4_ID13346_12 --> 0 - 2 Original Alignment GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAag gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAaggtaagtaagccctatatggtcagagccatttagagtagaaagctagataa Alignment from CESAR GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAag gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAaggtaagtaagccctatatggtcagagccatttagagtagaaagctagataa Alignment from Spaln_aa2Genome GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAAG gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAAGgtaagtaagccctatatggtcagagccatttagagtagaaagctagataa Alignment from Spaln_nt2Genome GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAAG gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAAGgtaagtaagccctatatggtcagagccatttagagtagaaagctagataa Alignment from Pairagon GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAAG gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAAGgtaagtaagccctatatggtcagagccatttagagtagaaagctagataa Alignment from Exonerate_protein2genome GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAAG gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAAGgtaagtaagccctatatggtcagagccatttagagtagaaagctagataa Alignment from Exonerate_coding2genome GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAAG gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAAGgtaagtaagccctatatggtcagagccatttagagtagaaagctagataa Alignment from GeneWise GCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTGGGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAAG gggccctggtgtttcctacctaccttcatcccatccctaccaccctccagGCCATTAAGGGTACAGTAAAATCCAGAGCAGTGCTTTTCGGGACCTTGGCTCTGACTCCTGAACTCTTTATCCACATCTTCAAAAGgtaagtaagccctatatggtcagagccatttagagtagaaagctagataa #### Sfxn4_ID13348_10 --> 0 - 1 Original Alignment TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTg ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCagtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac Alignment from CESAR TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTg ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCagtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac Alignment from Spaln_aa2Genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCAgtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac Alignment from Spaln_nt2Genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCAgtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac Alignment from Pairagon TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCAgtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac Alignment from Exonerate_protein2genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCAgtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac Alignment from Exonerate_coding2genome TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCAgtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac Alignment from GeneWise TTAATTCCTCATCTCTTTCAAATGAAGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTG ggtttgtgtcaatttttggtgctgtgatctttggtttttctcacctttagTTAATTCCTCACTTCTTTCAAATGAAGTATCCCTCAAATAACTTTTGGCTCAAGAGAACCTTGCCAGTTGTCTTGCTCAgtaagtaagaaaatagtctggacacatgtagctggactgtttacagtaac #### Sfxn4_ID13353_5 --> 0 - 1 Original Alignment TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAg aaaaaatcaaatccaatgttgagcagaccatccatccctggccaactcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAggtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct Alignment from CESAR TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAg aaaaaatcaaatccaatgttgagcagaccatccatccctggccaactcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAggtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct Alignment from Spaln_aa2Genome TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccaatgttgagcagaccatccatccctggccaactcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct Alignment from Spaln_nt2Genome TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccaatgttgagcagaccatccatccctggccaactcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct Alignment from Pairagon TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccaatgttgagcagaccatccatccctggccaactcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct Alignment from Exonerate_protein2genome TCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaaaaatcaaatccaatgttgagcagaccatccatccctggccaactcagTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct Alignment from Exonerate_coding2genome ATTAAAGACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAG aaatcaaatccaatgttgagcagACCATCCATCCCTGG---CCAACTCAGTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct Alignment from GeneWise ATTAAAGACGCATGGAATAAGAGTCTTTCAACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCA- aaatcaaatccaatgttgagcagACCATCCATCCCTGG---CCAACTCAGTCAACTGTGCAGCCTGACAGCAGCACATTGATTCCCCATCTTTTTCGACCTGCAGgtgagttgctgtccttgttcaggagtaggtggagacatgtggtatactct #### Sh3pxd2a_ID10167_14 --> 0 - 0 Original Alignment GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG gtccataaggcctagagcataagagataatgtcaaggtgtctttgcccagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata Alignment from CESAR GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG gtccataaggcctagagcataagagataatgtcaaggtgtctttgcccagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata Alignment from Spaln_aa2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG gtccataaggcctagagcataagagataatgtcaaggtgtctttgcccagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata Alignment from Spaln_nt2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG gtccataaggcctagagcataagagataatgtcaaggtgtctttgcccagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata Alignment from Pairagon GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG gtccataaggcctagagcataagagataatgtcaaggtgtctttgcccagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata Alignment from Exonerate_protein2genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG gtccataaggcctagagcataagagataatgtcaaggtgtctttgcccagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata Alignment from Exonerate_coding2genome GCTCCCCAAATCTGAGGACAAGACCTCCCCCGCGCAGAGAATCCAGCCTGGGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG GTCCATAAGGCCTAGAGCATAAGAGATAATGTCAAGGTGTCTTTGCCCAGGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata Alignment from GeneWise GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG gtccataaggcctagagcataagagataatgtcaaggtgtctttgcccagGGGTTCCAGCTACCAAAGCCACCAGAGCCCCCCTCTGTTGAGGTAGAGTACTACACCATTGCTGAATTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAGAAGGCAGAGgtcagtctccctacaatttaatcaccattctccctttcaacaagactata #### Sh3pxd2a_ID10187_8 --> 2 - 1 Original Alignment gtGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCg gcttggtattgccagcctcagtctcatgtcctgttcttgtcccctcacaggtGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTggtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg Alignment from CESAR gtGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCg gcttggtattgccagcctcagtctcatgtcctgttcttgtcccctcacaggtGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTggtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg Alignment from Spaln_aa2Genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG gcttggtattgccagcctcagtctcatgtcctgttcttgtcccctcacagGTGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTGgtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg Alignment from Spaln_nt2Genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG gcttggtattgccagcctcagtctcatgtcctgttcttgtcccctcacagGTGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTGgtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg Alignment from Pairagon GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG gcttggtattgccagcctcagtctcatgtcctgttcttgtcccctcacagGTGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTGgtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg Alignment from Exonerate_protein2genome GTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG gcttggtattgccagcctcagtctcatgtcctgttcttgtcccctcacagGTGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTGgtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg Alignment from Exonerate_coding2genome GTGACAGGTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG gcttggtattgccagcctcagtctcatgtcctgttcttgtcccCTCACAGGTGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTGgtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg Alignment from GeneWise GTCCAGCTGGGCTGAG------------TCTCCCAAGAAGGACGTGACAGGTGCCGACACCAACGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAACAAGAGAACTCGGAGCTGAGCCTCCAGGCCGGGGAGGTGGTAGATGTCATCGAGAAGAACGAAAGCG GCTTGGTATTGCCAGCCTCAGTCTCATGTCCTGTTCTTGTCCCCTCACAGGTGCTGACACCAATGCCGAGCCCATGATACTGGAACAGTACGTGGTGGTGTCAAACTATAAGAAGCAGGAGAACTCAGAGCTGAGCCTCCAGGCTGGGGAGGTGGTAGACGTCATTGATAAGAATGAAAGTGgtgagagtgtgtcctcatgtccagccttacttttctaagggcaaccctgg #### Sh3pxd2a_ID10197_4 --> 2 - 0 Original Alignment gcAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG actctttaggctgtctctttaggctgttaagctccatgctctgttctcaggcAAGATCCTCTTCCGGAGAAGTCATATCCGTGATGTAGCTGTGAAGAGATTAAAGCCTATTGATGAGTATTGCAGGgtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct Alignment from CESAR gcAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG actctttaggctgtctctttaggctgttaagctccatgctctgttctcaggcAAGATCCTCTTCCGGAGAAGTCATATCCGTGATGTAGCTGTGAAGAGATTAAAGCCTATTGATGAGTATTGCAGGgtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct Alignment from Spaln_aa2Genome GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG actctttaggctgtctctttaggctgttaagctccatgctctgttctcagGCAAGATCCTCTTCCGGAGAAGTCATATCCGTGATGTAGCTGTGAAGAGATTAAAGCCTATTGATGAGTATTGCAGGgtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct Alignment from Spaln_nt2Genome GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG actctttaggctgtctctttaggctgttaagctccatgctctgttctcagGCAAGATCCTCTTCCGGAGAAGTCATATCCGTGATGTAGCTGTGAAGAGATTAAAGCCTATTGATGAGTATTGCAGGgtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct Alignment from Pairagon GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG actctttaggctgtctctttaggctgttaagctccatgctctgttctcagGCAAGATCCTCTTCCGGAGAAGTCATATCCGTGATGTAGCTGTGAAGAGATTAAAGCCTATTGATGAGTATTGCAGGgtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct Alignment from Exonerate_protein2genome GCAAGATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG actctttaggctgtctctttaggctgttaagctccatgctctgttctcagGCAAGATCCTCTTCCGGAGAAGTCATATCCGTGATGTAGCTGTGAAGAGATTAAAGCCTATTGATGAGTATTGCAGGgtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct Alignment from Exonerate_coding2genome actctttaggctgtctctttaggctgttaagctccatgctctgttctcaggcaagatcctcttccggagaagtcatatccgtgatgtagctgtgaagagattaaagcctattgatgagtattgcagggtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct Alignment from GeneWise ATCCTCTTCCGGAGAAGCCACATCCGCGACGTGGCTGTGAAGAGACTAAAGCCCATCGATGAATACTGCAGG actctttaggctgtctctttaggctgttaagctccatgctctgttctcaggcaagATCCTCTTCCGGAGAAGTCATATCCGTGATGTAGCTGTGAAGAGATTAAAGCCTATTGATGAGTATTGCAGGgtaagtcggagtatagggcgacaagaaagagcactctagtcttagtttct #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_coding2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttATGCCAGAAGCTGGTACTGAGACCTTGGAT---GAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAggtgagactgccagttggatgttagctccctcatatacattttaattttac Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAggtgagactgccagttggatgttagctccctcatgtttctgtttctgtctt Alignment from Spaln_aa2Genome ATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttatgccagaagctggtactgagaccttggatgaatggcagtccatctcagagATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcatatacattttaattttac Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTT---GGATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcatatacattttaattttac Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTT---GGATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcatatacattttaattttac Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcatatacattttaattttac Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcatatacattttaattttac Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcatatacattttaattttac #### Sipa1_ID1144_8 --> 0 - 2 Original Alignment CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAag tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAaggtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg Alignment from CESAR CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAag tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAaggtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg Alignment from Spaln_aa2Genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg Alignment from Spaln_nt2Genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg Alignment from Pairagon CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg Alignment from Exonerate_protein2genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg Alignment from Exonerate_coding2genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg Alignment from GeneWise CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tgaggagcaggacatgtccccagccactaatttgttcaatctgcttgcagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTAGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTACTGCGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCCGCCGCCCAGATGCTGCGCTCTGCACCAAAGATTTGTGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtacatcactggattggacttctgtgacgtaagtgttgcaaaaacttttg #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcaggGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcaggGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc #### Sipa1_ID1149_3 --> 0 - 0 Original Alignment CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt Alignment from CESAR CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt Alignment from Spaln_aa2Genome CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt Alignment from Spaln_nt2Genome CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt Alignment from Pairagon CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt Alignment from Exonerate_protein2genome CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt Alignment from Exonerate_coding2genome CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt Alignment from GeneWise CTCCGGACCCTCCGTGGCACCATCTCGGAGGACGCACTGCCTCCCGGCCCCCCGAGGGGCCTATCTCCGAGGAAGCTTCTGGAACATGTGGCTCCACGGCTGAGCCCCACCTGCCTGCGCCTGGGTTCAGCCTCTCCCAAGGTGCCCCGCACGCTGCTTACTCTGGATGAGCAAGTG aagatcacagggtgcaatagcctatactctctttctgcctctacctatagCTCCGGACCCTCCATGGTACTATCTCTGAGGATGCATTACCTCCTGGTCCCCCAAGGGGCCTGTCTCCAAGGAAGCTTTTGGAACACGGGGCTCCCCGCGTGAGCCCTGCCTGCCTGCACCTGGGTTCAGCCTCACCCATAGTGCCTCGCATGCTGCTGACTTTGGATGAGCAAGTGgtaagtacctaggcggaagaggggcattgtatcatggggtgatcagaatt #### Slc15a3_ID3032_7 --> 2 - 1 Original Alignment gtCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg cccactgcattctctctggaatacaagtgtggctttggcttctgttttaggaCTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTggtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from CESAR gtCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTg cccactgcattctctctggaatacaagtgtggctttggcttctgttttaggaCTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTggtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Spaln_aa2Genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Spaln_nt2Genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Pairagon GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Exonerate_protein2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from Exonerate_coding2genome GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat Alignment from GeneWise GTCTGGAGTTCGCTTACTCAGAAGCCCCACGCTCCATGCAGGGTGCAATTATGGGCATCTTCTTCTGCCTTTCCGGGGTGGGCTCACTGCTAGGCTCTGGCTTGGTGGCCCTACTGTCTTTTCCTGGGGGCTGGATGTACTGCCCCAAGGACTTTG cccactgcattctctctggaatacaagtgtggctttggcttctgttttagGACTTGAGTTTGCTTACTCAGAAGCCCCACGCTACATGCAAGGTGCTATTATGGGTACATTCTTCTGCCTTTCAGGGGTTGGCTCATTGCTAGGATCTGGCTTGGTGGCCTTACTATCTTTTCCTGGGGGCTGGACGTACTGTGCCAAGGACTTTGgtgggtgaggggggcctatttccagcgaagaaaggcctggcaggaggcat #### Slc16a12_ID6973_5 --> 1 - 1 Original Alignment gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacaggTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAggtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac Alignment from CESAR gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacaggTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAggtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac Alignment from Spaln_aa2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAGgtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac Alignment from Spaln_nt2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAGgtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac Alignment from Pairagon GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAGgtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac Alignment from Exonerate_protein2genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAGgtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac Alignment from Exonerate_coding2genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAGgtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac Alignment from GeneWise -TGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG aaaggcacttgttttgcaaaggaagggacttcaatccaaacaaaatacagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGGTTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTTACCTTGATCCCAGTTGTGACTGCAGAAATAGTAGGAACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCGGTGCCTTACTTGGTGAGCCCACCCATTGCAGgtgtgtcatgagattctactacctgtggttgagatctgaagggaatgtac #### Slc16a12_ID6974_4 --> 2 - 2 Original Alignment gtCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAag ttgtccacttacacagcaaactggcattaaaaagttatttttccccctaggaCTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCT------------CTCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAaggtgagttctggggcaagctgtataatctgctcttcctggaagattttaat Alignment from CESAR gtCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAag ttgtccacttacacagcaaactggcattaaaaagttatttttccccctaggaCTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCT------------CTCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAaggtgagttctggggcaagctgtataatctgctcttcctggaagattttaat Alignment from Spaln_aa2Genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG ttgtccacttacacagcaaactggcattaaaaagttatttttccccctagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCT------------CTCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAAGgtgagttctggggcaagctgtataatctgctcttcctggaagattttaat Alignment from Spaln_nt2Genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG ttgtccacttacacagcaaactggcattaaaaagttatttttccccctagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCTC------------TCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAAGgtgagttctggggcaagctgtataatctgctcttcctggaagattttaat Alignment from Pairagon GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG ttgtccacttacacagcaaactggcattaaaaagttatttttccccctagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCT------------CTCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAAGgtgagttctggggcaagctgtataatctgctcttcctggaagattttaat Alignment from Exonerate_protein2genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG ttgtccacttacacagcaaactggcattaaaaagttatttttccccctagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCT------------CTCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAAGgtgagttctggggcaagctgtataatctgctcttcctggaagattttaat Alignment from Exonerate_coding2genome GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG ttgtccacttacacagcaaactggcattaaaaagttatttttccccctagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCT------------CTCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAAGgtgagttctggggcaagctgtataatctgctcttcctggaagattttaat Alignment from GeneWise GTCTTGGATTTGCACTTTGTTACTCTCCGGCAATTGCCATGGTGGGCAAGTATTTCAGCAGACGGAAAGCCCTGGCTTATGGGATTGCCATGTCAGGCAGTGGCATTGGTACCTTCATCCTGGCTCCTGTCGTTCAGCTCCTCATCGAACAGTTTTCCTGGCGAGGAGCACTGCTCATTCTTGGCGGGTTCGTTCTGAATCTCTGCGTCTGCGGCGCTCTGATGCGTCCAATTACCCTTAAAGAGGACCGATCAGTCCCAGAAAAGAATCACAACCGTGAATCTCAGCGAGAAGACTGTAAGCAAGCATCTCCCTATTCACCTTTGACCAAAGAATGTACAGAGACCCGTCTTTGCTGCTCCTTGCAGCAGGAATACGGTTTTTTACTGATGTCAGACTTCGTCGTGTTGGCCGTCTCTGTTCTGTTCATGGCCTACGGCTGCAGCCCTCTCTTTGTGTACCTAGTGCCTTATGCTTTGAGTGTCGGAGTGAGCCACCATCAAGCTGCTTTCCTCATGTCCATCCTCGGGGTAATCGATATTGTTGGCAATATCACATTTGGCTGGCTAACTGACAGAAG ttgtccacttacacagcaaactggcattaaaaagttatttttccccctagGACTTGGATTTGCTCTTTGTTACTCTCCAGCAATTGCTATGGTGGGCAAGTATTTCAGCAAACAGAAAGTCCTGACTTATGGCATCGCCATGTCAGGCAGTGGCATTGGTACCTTCATTCTAGCT------------CTCCTAATAGAACAGTTTTCCTGGCACGGGGCACTTCTTGTTCTTGGTGGGGCAATTCTGAATCTCTGTGTCTGTGGTGCCCTGATGCATCCAATTAGCCTTAAAGAGGACCGCTCAGTTCCAGAACGGAATCACAATCGTGAATCTCAGCAGGAAGACTGTAAGCAAGCATCCCCC---TCACCACTGACCAAAGAGTGTACAGAGACCCGCCTCAGCTGTTCCTTGCAGCAGGAATATGGTTTTTTATTGATGTCAGATTTTGTTGTGTTGGCTGTCTCTGCTCTATTCATGTCCTACGGTTGTAGTCCTCTTTCTGTGTATCTAGCACCATATGCATTGAGTGTTGGAGTAAGTCACCATCAGGCTGCTTTCCTCATGTCCATCCTCGGGATAATCGATGTAGTTGGCAATATAACATTTGGCTGGCTGACTGATAGAAGgtgagttctggggcaagctgtataatctgctcttcctggaagattttaat #### Slc16a12_ID6975_3 --> 2 - 1 Original Alignment ctCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAg agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagctCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAggtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc Alignment from CESAR ctCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAg agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagctCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAggtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc Alignment from Spaln_aa2Genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAGgtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc Alignment from Spaln_nt2Genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAGgtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc Alignment from Pairagon CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAGgtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc Alignment from Exonerate_protein2genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAGgtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc Alignment from Exonerate_coding2genome CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAGgtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc Alignment from GeneWise CTCCGCTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCGGGGATCATGCTGGGTGGCTTGCTGGCATCTACTGGTTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTGGGAGTTCTTACAG agcacgcccaatggccggctttctcatggtttttccgtctttttttgtagCTCCACTTGGGAGTGTTGTCAGTAACCAGTTATCCTGTCAAGCCGGGATCATGCTGGGTGGCTTGCTGGCATCCACGGGCTTCATCCTGGGCTCATTTGCCACCAGCTTGAAGCACCTCTACCTCAGCCTTGGAGTTCTTACAGgtgaaatgtacaggctgagaaagggaaatccatttagctaaccccctacc #### Slc18a2_ID12935_3 --> 1 - 1 Original Alignment aATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTa tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagaATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTagtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct Alignment from CESAR aATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTa tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagaATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTagtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct Alignment from Spaln_aa2Genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagAATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTAgtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct Alignment from Spaln_nt2Genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagAATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTAgtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct Alignment from Pairagon AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagAATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTAgtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct Alignment from Exonerate_protein2genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagAATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTAgtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct Alignment from Exonerate_coding2genome AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagAATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTAgtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct Alignment from GeneWise AATTGGCTATCCAATTCCCATGTTTGCTGGATTCTGCATTATGTTTATCTCAACAGTTA tgtttgctggattctgcatcatgtttattggttgtatttgtccgtttcagAATTGGCTATCCAATACCCATGTTTGCTGGATTCTGCATTATGTTTATTTCAACAGTTAgtgagtcttgatatgtcttctgtatgcaggcccgagtaggaggcctgcct #### Slc18a2_ID12937_5 --> 2 - 1 Original Alignment ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagggATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGggtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg Alignment from CESAR ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagggATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGggtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg Alignment from Spaln_aa2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg Alignment from Spaln_nt2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg Alignment from Pairagon GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg Alignment from Exonerate_protein2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg Alignment from Exonerate_coding2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg Alignment from GeneWise GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactctcttgattgtagatgatatatgtatactcttgccctgacagGGATGGGCATGCTAGCCAGTGTGTACACAGATGATGAAGAGAGGGGCAATGCAATGGGCATTGCTCTTGTGGGCTTGGCCATGGGGGTTTTGGgtaagtgtggtaatgctgtggagactgctttggggggcctgggcgtcagg #### Slc1a1_ID6166_5 --> 1 - 0 Original Alignment gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg Alignment from CESAR gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg Alignment from Spaln_aa2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg Alignment from Spaln_nt2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg Alignment from Pairagon GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg Alignment from Exonerate_protein2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg Alignment from Exonerate_coding2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg Alignment from GeneWise GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagcaacccaaggtatgcttccccttctctctgatccccaacagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtagagccaaagcttattttaagctggcccatcagaacacacagtacccg #### Slc1a1_ID6173_10 --> 1 - 2 Original Alignment tTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCag agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagtTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCaggtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc Alignment from CESAR tTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCag agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagtTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCaggtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc Alignment from Spaln_aa2Genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCAGgtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc Alignment from Spaln_nt2Genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCAGgtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc Alignment from Pairagon TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCAGgtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc Alignment from Exonerate_protein2genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCAGgtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc Alignment from Exonerate_coding2genome TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCAGgtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc Alignment from GeneWise TTCGGCAACCCTGCCAGTTACATTCCGCTGTGCGGAAGAAAAGAACCAGGTAGACAAGAGGATCACGAGATTTGTGCTGCCTGTTGGTGCCACCATCAACATGGACGGCACTGCGCTCTACGAAGCTGTGGCAGCCGTGTTTATTGCGCAACTGAATGGCTTGGACCTAAGCATTGGGCAGATCGTCACCATCAG agtgaggccttgaatccttagacataatcacaaacagcctgttttcacagTTCAGCAACCCTTCCAGTTACATTCCGCTGTGCAGAGGAAAAGAACCAAGTAGACAAGAGGATCACAAGATATGTGGTGCCTGTTGGTGCCACCATAAACATGGATGGCACTGCACTATATGAAGCTGTGTCAGCGGTGTTTATAGCACAATTGAAAGGCTTGGACTCAAGCATTGGGGGGATAGTGACCATCAGgtatggctcaatgggcccctcactacatctcaacatgcagctcctggttc #### Slc1a1_ID6174_11 --> 1 - 2 Original Alignment cATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCct actgagggctggtgaattggtatctacccatgcgattctctgtcccacagtATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCttgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc Alignment from CESAR cATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCct actgagggctggtgaattggtatctacccatgcgattctctgtcccacagtATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCttgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc Alignment from Spaln_aa2Genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT actgagggctggtgaattggtatctacccatgcgattctctgtcccacagTATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc Alignment from Spaln_nt2Genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT actgagggctggtgaattggtatctacccatgcgattctctgtcccacagTATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc Alignment from Pairagon CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT actgagggctggtgaattggtatctacccatgcgattctctgtcccacagTATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc Alignment from Exonerate_protein2genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT actgagggctggtgaattggtatctacccatgcgattctctgtcccacagTATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc Alignment from Exonerate_coding2genome CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT actgagggctggtgaattggtatctacccatgcgattctctgtcccacagTATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc Alignment from GeneWise CATTACAGCCACCGCTGCCAGCATTGGAGCTGCTGGGGTGCCCCAGGCTGGCCTGGTGACCATGGTGATCGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGACGTCACCCTGATCATTGCTGTTGACTGGCTCCT actgagggctggtgaattggtatctacccatgcgattctctgtcccacagTATTACAGCCACTGCTGCTAGCATTGGGGCCGCTGGGGTGCCACAGGCTGGCCTAGTTACCATGGTGATTGTGCTGAGTGCTGTGGGGCTGCCTGCCGAGGATGTCACCCTGATCATTGCTGTTGACTGGCTCTTgtaagtatagacaaaaggccctgcctaggatggttgggcaggcagctccc #### Slc22a12_ID1788_9 --> 1 - 2 Original Alignment gATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAAca ggggactgaacagaatagaatgttactaacacttccttttttaaaaataggATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGA------CCAGTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAAcagtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct Alignment from CESAR gATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAAca ggggactgaacagaatagaatgttactaacacttccttttttaaaaataggATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGA------CCAGTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAAcagtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct Alignment from Spaln_aa2Genome GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA ggggactgaacagaatagaatgttactaacacttccttttttaaaaatagGATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGACCA------GTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAACAgtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct Alignment from Spaln_nt2Genome GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA ggggactgaacagaatagaatgttactaacacttccttttttaaaaatagGATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGA------CCAGTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAACAgtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct Alignment from Pairagon GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA ggggactgaacagaatagaatgttactaacacttccttttttaaaaatagGATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGA------CCAGTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAACAgtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct Alignment from Exonerate_protein2genome GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA ggggactgaacagaatagaatgttactaacacttccttttttaaaaatagGATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGA------CCAGTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAACAgtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct Alignment from Exonerate_coding2genome GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA ggggactgaacagaatagaatgttactaacacttccttttttaaaaatagGATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGA------CCAGTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAACAgtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct Alignment from GeneWise GATGACTGCAGTGGGCCTCTGCCAGGTGGCAGCCCGAGGGGGAGCCATGCTAGGGCCTTTGGTACGGCTGCTGGGTGTCTATGGCTCCTGGATGCCCCTGCTGGTGTATGGAGTGGTGCCAGTGTTAAGTGGCCTAGCTGCACTGCTGCTGCCTGAGACCAAGAACTTACCACTGCCTGACACCATCCAAGACATCCAGAAACA ggggactgaacagaatagaatgttactaacacttccttttttaaaaatagGATGACTGCAGTGGGTCTCTGCCATGTGGCGGCCCGGGGGGGAGCTACACTAGGGCCTTTATTGCGGCTGCTGGGTGTATATGGATCCTGGATACCCTTGCTTGTCTATGGA------CCAGTTTTAAGTGGCTTAGCAGCACTGCTACTGCCTGAGACCAAAATCTTACCGCTGCCTGACACCATTCAAGACATCCAGAAACAgtaagggcgcaggatcaaagaaactacctaaggccaccctctcactccct #### Slc22a12_ID1792_5 --> 1 - 0 Original Alignment gTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacaggTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt Alignment from CESAR gTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacaggTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt Alignment from Spaln_aa2Genome GTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacagGTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt Alignment from Spaln_nt2Genome GTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacagGTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt Alignment from Pairagon GTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacagGTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt Alignment from Exonerate_protein2genome GTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacagGTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt Alignment from Exonerate_coding2genome GTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacagGTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt Alignment from GeneWise GTGGCTACCAGAATCGGCACGCTGGCTCATCACGGTAGGCAAGCTGGACCAGGGCCTGCAGGAACTACAGAGGGTAGCTGCTGTCAACAGGAGGAAGGCAGAGGGAGACACGTTGACCATGGAG acatgctacgtatgtgaacatgcaccatagctctgtcatttgccccacagGTGGCTACCAGAATCTACACAGTGGCTTATGACAGTGGGTAAGCTGGATCAGAGCCTGCAGGAGCTGCAGAAGACATCTGCAGTCAATAGGAGGAAGGCAGAGGGAGACACATTGACAATGGAGgtaaagcaaagcagggccttcccttggatgactccctttagataccctgt #### Slc22a19_ID2204_9 --> 1 - 2 Original Alignment gGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATaa tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagtGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATaagcaagtaatagcacacttgccttcttactagcaggttgtaaatcaggggt Alignment from CESAR gGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATaa tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagtGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATaagcaagtaatagcacacttgccttcttactagcaggttgtaaatcaggggt Alignment from Spaln_aa2Genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagTGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATAAgcaagtaatagcacacttgccttcttactagcaggttgtaaatcaggggt Alignment from Spaln_nt2Genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagTGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATAAgcaagtaatagcacacttgccttcttactagcaggttgtaaatcaggggt Alignment from Pairagon GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagTGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATAAgcaagtaatagcacacttgccttcttactagcaggttgtaaatcaggggt Alignment from Exonerate_protein2genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagTGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATAAgcaagtaatagcacacttgccttcttactagcaggttgtaaatcaggggt Alignment from Exonerate_coding2genome GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAA tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagTGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATAAgcaagtaatagcacacttgccttcttactagcaggttgtaaatcaggggt Alignment from GeneWise GGCAACTGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACGACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTCTTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAAGAGG tacaacttcttgatgtgaaaatcgctagtgacccctgttttccttttcagTGCAACTGCTTTAGGAGTTGTTGGAATTGCTGGCAGTGCTGGTGGGGCACTATTTCCCCTACTCATGATCCTCACAACCTACTCTGCTCCATTGCCCTGGATCATCTATGGGATCCTCCCCTTCCTTGGTGGCCTTGTTGCCCTTTTTCTTCCTGGGACTAAGAATCAGCCTCTGTCTGACTCAGTCCAAGATATAGAAAATAAGCAAgtaatagcacacttgccttcttactagcaggttgtaaatcaggggt #### Slc22a26_ID2219_6 --> 0 - 2 Original Alignment GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGag aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGaggtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata Alignment from CESAR GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGag aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGaggtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata Alignment from Spaln_aa2Genome GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGAG aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGAGgtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata Alignment from Spaln_nt2Genome GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGAG aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGAGgtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata Alignment from Pairagon GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGAG aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGAGgtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata Alignment from Exonerate_protein2genome GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGAG aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGAGgtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata Alignment from Exonerate_coding2genome GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGAG aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGAGgtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata Alignment from GeneWise GTTGTAAGAACCATCATGAAGGATGAGATTGCAATACCACGAACAAAACCTTCTCTACGTGACTTGTTCCACATGCCCAACTTGCGAAAGCGCCTTTGTCTCCTGTGCCTTTTGAG aatgctcatcatgttgatgatgaagtaacgcattttattaatcattgcagGTTGTAAGAACTATCATGAATGATGAGATTGCAATACCACGTACAAAACCTTTGCTACATGACCTGTTCCACATGCCCATCCTGCGAAAGCGCCTTTGCCTCCTTTGCCTTTTGAGgtgagttatacagtgaattctcgacatttgggtacacttaaagtgatata #### Slc22a26_ID2220_5 --> 1 - 0 Original Alignment gTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctaggTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta Alignment from CESAR gTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctaggTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta Alignment from Spaln_aa2Genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctagGTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta Alignment from Spaln_nt2Genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctagGTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta Alignment from Pairagon GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctagGTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta Alignment from Exonerate_protein2genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctagGTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta Alignment from Exonerate_coding2genome GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctagGTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta Alignment from GeneWise GTGGCTGACAGAATCAGCTCGGTGGCTGATTGTAACCAACAAACCCCAGAAGGCCTTACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAAGATGTCCTAACCATGGAG cttgtgattttaccatccatagcttcggtcattccggtctctgtttctagGTGGTTGACAGAATCAGCTCAGTGGCTGATTGTAACCAACAACCCCCAGAAGGCCTCACAGGAACTTAGAAAAGTTGCAAGCAAGAATGGAATAAAGAATTCTGAGGACATCCTAACCATGGAGgtgagatgtgccatgagttagatacagattcttgggtcatttacaaggta #### Slc22a27_ID2230_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggtaagtgactcaagtcacacctcccagccagggagcctatctagctgact Alignment from CESAR aaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAag tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagaaATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAaggtaagtgactcaagtcacacctcccagccagggagcctatctagctgact Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtaagtgactcaagtcacacctcccagccagggagcctatctagctgact Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtaagtgactcaagtcacacctcccagccagggagcctatctagctgact Alignment from Pairagon AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtaagtgactcaagtcacacctcccagccagggagcctatctagctgact Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtaagtgactcaagtcacacctcccagccagggagcctatctagctgact Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtaagtgactcaagtcacacctcccagccagggagcctatctagctgact Alignment from GeneWise AAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAG tataacagccaagcttggctagccacaacctcccctgcctgtccctgcagAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTTCTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGgtaagtgactcaagtcacacctcccagccagggagcctatctagctgact #### Slc22a27_ID2231_7 --> 1 - 1 Original Alignment aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagaCTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGagtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag Alignment from CESAR aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagaCTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGagtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag Alignment from Spaln_aa2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagACTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGAgtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag Alignment from Spaln_nt2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagACTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGAgtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag Alignment from Pairagon ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagACTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGAgtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag Alignment from Exonerate_protein2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagACTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGAgtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag Alignment from Exonerate_coding2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagACTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGAgtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag Alignment from GeneWise ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaatcaagtccgagtacgttgacctgatgactcctccttcccagACTTTTATTTACAGTGTCGATTTTTGGTCTGGCAGTCCACCTCCAATACCTAAGTTCTAATATTATCCTGTTGCAGTTTCTCACTAGTGCATTGGCCATACTAGTTGGTGTTATTGGACCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACATCCTTGAGGGGAATCTACATTCTCATTGCTGTATTTGTACCACAGAgtaagggaagagttacagcgtaaaaaagagattgaagaaataaggtaaag #### Slc22a28_ID2243_8 --> 2 - 2 Original Alignment aaATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAag tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagaaATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAaagtgagtgtgttaaagccagtttccccattaatttctttcatataaatact Alignment from CESAR aaATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAag tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagaaATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAaagtgagtgtgttaaagccagtttccccattaatttctttcatataaatact Alignment from Spaln_aa2Genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagAAATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAAAgtgagtgtgttaaagccagtttccccattaatttctttcatataaatact Alignment from Spaln_nt2Genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagAAATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAAAgtgagtgtgttaaagccagtttccccattaatttctttcatataaatact Alignment from Pairagon AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagAAATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAAAgtgagtgtgttaaagccagtttccccattaatttctttcatataaatact Alignment from Exonerate_protein2genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagAAATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAAAgtgagtgtgttaaagccagtttccccattaatttctttcatataaatact Alignment from Exonerate_coding2genome AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagAAATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAAAgtgagtgtgttaaagccagtttccccattaatttctttcatataaatact Alignment from GeneWise AAATGCAGACCCTGCGTATTATTGTGGTCACATTGGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTAGTAATCTTCATATAAATGAGCTACTTCCAACCACATTAAG tactcaataaaagcttaattgatcaccatattgtatcaaaccattcttagAAATGCAGACCCTGCGAATTGTTGTTGTCACTTTAGCAGCAGCACTTTCTTCTCTATGTATGTGTGTTTGTAATCTTCATATAAATGAATCAGTTCCAACCACTTTAAAgtgagtgtgttaaagccagtttccccattaatttctttcatataaatact #### Slc22a29_ID2254_9 --> 1 - 2 Original Alignment gGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATga tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaaggGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATC---TATGCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATgagtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa Alignment from CESAR gGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATga tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaaggGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATCTAT---GCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATgagtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa Alignment from Spaln_aa2Genome GGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaagGGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATCTAT---GCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa Alignment from Spaln_nt2Genome GGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaagGGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATCT---ATGCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa Alignment from Pairagon GGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaagGGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATCT---ATGCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa Alignment from Exonerate_protein2genome GGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaagGGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATCTAT---GCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa Alignment from Exonerate_coding2genome GGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaagGGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATCTAT---GCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa Alignment from GeneWise GGCAACAGCTCTAGGAGTCATTGGATTCTTTGGTAATAGTGGATTATTCCTATCCCCCCTGTTTATGCTGGTAGCGACATACTATGCCAACTTGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAATGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA tttgaaatgtatatcttttccattttttgctcacttgacttcatttcaagGGCAACAGCTCTAGGAGTCATTGGATTCTTTGGCAATAGTGGATTATTTCTATTCCCCCTGTTTATGCTAGTAGCAACATACTATGCAAATTTGCCTTGGATTTTCTATGAGGGCTTTTCCATCTAT---GCATTTACTGTATTCCTCCTCCTTGAAACCAGGAACCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaaacttaactgccccttaagggcagtgtccatgctatctggaa #### Slc22a29_ID2257_6 --> 0 - 2 Original Alignment ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAag ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAaggtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt Alignment from CESAR ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAag ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAaggtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt Alignment from Spaln_aa2Genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAAGgtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt Alignment from Spaln_nt2Genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAAGgtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt Alignment from Pairagon ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAAGgtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt Alignment from Exonerate_protein2genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAAGgtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt Alignment from Exonerate_coding2genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAAGgtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt Alignment from GeneWise ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ctctcaccatttgattacactgagtaaattggtgtttttaatgttttcagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCAGCAAAGACTGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAACGGCTATGTGTCCTGTCCTTTATAAGgtaaccttacaattgtgtataaagatcatatatgggtagattttctcttt #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtaggTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtaggTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaatttaaagagagaccctaccaacatcaactgtatatattatcatgtagGTTCTTCATTGAATCGGCCCGCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCTGTATCAATGCAAAACAAGAAGAGGGGCCTAAACTGTGTATAGAGgtaatttctatttattcctagacactgcctgaaatctgacccaggtcctc #### Slc22a8_ID2271_4 --> 2 - 2 Original Alignment atGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATT---GGGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCtg aggactggggctgacaagtcactaatttttccgattctttccttgtctagatGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCtggtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg Alignment from CESAR atGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGG---TACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCtg aggactggggctgacaagtcactaatttttccgattctttccttgtctagatGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCtggtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg Alignment from Spaln_aa2Genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGG---TACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG aggactggggctgacaagtcactaatttttccgattctttccttgtctagATGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCTGgtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg Alignment from Spaln_nt2Genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGGT---ACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG aggactggggctgacaagtcactaatttttccgattctttccttgtctagATGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCTGgtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg Alignment from Pairagon ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTG---GGTACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG aggactggggctgacaagtcactaatttttccgattctttccttgtctagATGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCTGgtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg Alignment from Exonerate_protein2genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGG---TACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG aggactggggctgacaagtcactaatttttccgattctttccttgtctagATGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCTGgtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg Alignment from Exonerate_coding2genome ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGG---TACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG aggactggggctgacaagtcactaatttttccgattctttccttgtctagATGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCTGgtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg Alignment from GeneWise ATGTGGAATGGGTACCCACCTCCACGCGGGCCATCTCATCAACAACTATTGGG---TACTGCTACACCATTGGTCAATTCATTCTGCCTGGCCTGGCCTATGCCGTTCCTCAGTGGCGCTGGCTACAGTTGTCCGTGTCTGCTGCCTTCTTCATCTTCTCCTTGTTGTCCTG aggactggggctgacaagtcactaatttttccgattctttccttgtctagATGTGGAATGGGTGCCAACCTCTACACGGGCAATCTCATCAACAACAATTGGGTGGTACTGCTACACAATTAGTATATTCATACTGCCTGGCCTGGCCTATGCTGTTCCTCAATGGCGCTGGTTACAACTATGTGTATCCGCAGCCTTCTTTATCTTTTCCTTCTTGTCCTGgtgagaggaccacttttgtgtgctcagtcaagaccactcgtcttactttg #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtttgcactggcctgtctttttctctctctttccaataggCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACtggtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtttgcactggcctgtctttttctctctctttccaataggCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACtggtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtttgcactggcctgtctttttctctctctttccaatagGCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATGCTA---CTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACTGgtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtttgcactggcctgtctttttctctctctttccaatagGCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACTGgtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtttgcactggcctgtctttttctctctctttccaatagGCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACTGgtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtttgcactggcctgtctttttctctctctttccaatagGCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACTGgtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtttgcactggcctgtctttttctctctctttccaatagGCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACTGgtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtttgcactggcctgtctttttctctctctttccaatagGCAAACAGGTATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCGTTTTTTCTGCTTGAGACCCTAAATCGCTCCCTACCAGAAACCATCAAGGACATACAAGACTGgtgagttcttcacctttgtcacacatgttcccacaaacaggccagggtgc #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat #### Slc3a2_ID2306_3 --> 2 - 1 Original Alignment gtCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGa aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcaggtCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGagtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta Alignment from CESAR gtCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGa aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcaggtCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGagtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta Alignment from Spaln_aa2Genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcagGTCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGAgtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta Alignment from Spaln_nt2Genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCAA------TTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcagGTCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGAgtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta Alignment from Pairagon GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGG------CCCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcagGTCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGAgtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta Alignment from Exonerate_protein2genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcagGTCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGAgtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta Alignment from Exonerate_coding2genome GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGC------CCAATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcagGTCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGAgtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta Alignment from GeneWise GTCTGAAGAGCCATCTGGAGTACTTGAGCACCCTGAAGGTGAAGGGCCTGGTGTTAGGCCCA------ATTCACAAGAACCAGAAGGATGAAATCAATGAAACCGACCTGAAACAGATTAATCCCACTTTGGGCTCCCAGGAAGATTTTAAAGACCTTCTACAAAGTGCCAAGAAAAAGA aggctgcaggcatttaactgcctattgtaggcaccctattgcttttgcagGTCTGAAGAGCCATCTAGAATACTTGAGCACGCTGAAGGTGAAGGGCCTGGTGTCGGGCCCCACCCCCATTCACAAGAACCAAAAGGATGAGATCAATGAAACTGACCTGAAACAGATTAATCCCACTCAGGGCTCTCAGGAAGATTTTAAGGACCTTTTACAGAGTGCCAAGATAAGGAgtaggtctctggaaggatctgaaaaggtttattttggctcagctttctta #### Slit1_ID8209_29 --> 1 - 1 Original Alignment gTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAg atgtcctcagattcttccacccccttcctgccttttttattctctatcaggTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAggtgagtactgtggagacctgcatctccccaatcctgctgatgtaccaatg Alignment from CESAR gTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAg atgtcctcagattcttccacccccttcctgccttttttattctctatcaggTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAggtgagtactgtggagacctgcatctccccaatcctgctgatgtaccaatg Alignment from Spaln_aa2Genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcagattcttccacccccttcctgccttttttattctctatcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAGgtgagtactgtggagacctgcatctccccaatcctgctgatgtaccaatg Alignment from Spaln_nt2Genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcagattcttccacccccttcctgccttttttattctctatcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAGgtgagtactgtggagacctgcatctccccaatcctgctgatgtaccaatg Alignment from Pairagon GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcagattcttccacccccttcctgccttttttattctctatcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAGgtgagtactgtggagacctgcatctccccaatcctgctgatgtaccaatg Alignment from Exonerate_protein2genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcagattcttccacccccttcctgccttttttattctctatcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAGgtgagtactgtggagacctgcatctccccaatcctgctgatgtaccaatg Alignment from Exonerate_coding2genome GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAG atgtcctcagattcttccacccccttcctgccttttttattctctatcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAGgtgagtactgtggagacctgcatctccccaatcctgctgatgtaccaatg Alignment from GeneWise GTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCATGCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACACAGGAAG atgtcctcagattcttccacccccttcctgccttttttattctctatcagGTGCTCCTGTCCCTCTGGCTTTGAAGGGCCAACCTGTGGAGTAGACACAGATGACTGTGTTAAGCATGCCTGTGTCAATGGGGGTGTTTGTGTAGATGGTGTGGGGAATTACACATGTCAGTGCCCCCTCCAGTACACAGGTGAgtactgtggagacctgcatctccccaatcctgctgatgtaccaatg #### Slit1_ID8211_28 --> 0 - 2 Original Alignment GGCCGACACTGT---GAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCac aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCacgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt Alignment from CESAR GGCCGACACTGT---GAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCac aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCacgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt Alignment from Spaln_aa2Genome GGCCGACACTGT---GAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCACgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt Alignment from Spaln_nt2Genome GGCCGACACTGTGA---GGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCACgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt Alignment from Pairagon GGCCGACACTGT---GAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCACgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt Alignment from Exonerate_protein2genome GGCCGACACTGT---GAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCACgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt Alignment from Exonerate_coding2genome GGCCGACACTGT---GAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCACgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt Alignment from GeneWise GGCCGACACTGT---GAGGTGTCTCTGGACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTTCAC aataacagcttaagcatttccttaagtgttttctccttctgttttcccagAGCCGGCACTGTGAAGAGGTGTCACTGGATGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCGTGCCCAGGAAGGGGAAGATGCGGGCTTCACgtaagatacctgaggtcttgggggccactgctgggccctacatcccaatt #### Slit1_ID8212_27 --> 2 - 0 Original Alignment gtCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacaggtCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc Alignment from CESAR gtCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacaggtCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc Alignment from Spaln_aa2Genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacagGTCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc Alignment from Spaln_nt2Genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacagGTCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc Alignment from Pairagon GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacagGTCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc Alignment from Exonerate_protein2genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacagGTCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc Alignment from Exonerate_coding2genome GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacagGTCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc Alignment from GeneWise GTCCCCCCAGCCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAATGACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAG atctacatatgtccccctcttctttaccaacttgtcattcttcattacagGTCCCCCTAGCTTGGCAGTTCAGGCCAAGTGCGATCCATGTTTAGCCAGCCCATGCCAGAACCAAGGCACCTGCCACAATGGCCCTCTTGAAGTATATAGGTGCACCTGCCCCAGTGGCTACAAAgtgagtgaactagagggatagggttctccctgcacaggacatggttattc #### Slit1_ID8227_12 --> 1 - 2 Original Alignment gGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGct cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcaggGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGctgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag Alignment from CESAR gGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGct cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcaggGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGctgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag Alignment from Spaln_aa2Genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcagGGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGCTgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag Alignment from Spaln_nt2Genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcagGGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGCTgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag Alignment from Pairagon GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcagGGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGCTgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag Alignment from Exonerate_protein2genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcagGGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGCTgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag Alignment from Exonerate_coding2genome GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcagGGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGCTgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag Alignment from GeneWise GGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACACTCCAGCTGCT cagtttgagaacatgcctcctctgactttcttgcactgtcttgcttgcagGGTCCTTTATGGGAACAAGATTACTGACCTGCCCCGAGGTGTATTTGGAGGCTTGTACACACTCCAGTTGCTgtgggtcaattgggactttataaatccattgtgacagagcagcttctaag #### Slit1_ID8228_11 --> 1 - 2 Original Alignment aGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCct tgggttgttgcccttccgagctattaagatgctattcccttctctcatagaTACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCctgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca Alignment from CESAR aGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCct tgggttgttgcccttccgagctattaagatgctattcccttctctcatagaTACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCctgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca Alignment from Spaln_aa2Genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT tgggttgttgcccttccgagctattaagatgctattcccttctctcatagATACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCCTgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca Alignment from Spaln_nt2Genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT tgggttgttgcccttccgagctattaagatgctattcccttctctcatagATACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCCTgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca Alignment from Pairagon AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT tgggttgttgcccttccgagctattaagatgctattcccttctctcatagATACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCCTgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca Alignment from Exonerate_protein2genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT tgggttgttgcccttccgagctattaagatgctattcccttctctcatagATACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCCTgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca Alignment from Exonerate_coding2genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT tgggttgttgcccttccgagctattaagatgctattcccttctctcatagATACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCCTgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca Alignment from GeneWise AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT tgggttgttgcccttccgagctattaagatgctattcccttctctcatagATACCTGAGCAACAACCAGATTGCAGAGATCGCACCTGACACCTTCCAGGGCCTGCGTTCATTGAATTCCCTgtaagtcatatgcccaagtatgacagactttatggtaactcaagcttaca #### Slit1_ID8250_3 --> 1 - 2 Original Alignment gCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCct ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagaCAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCctgtaaggaggggtggattacataacaggggggttggcacgcttatgctata Alignment from CESAR gCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCct ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagaCAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCctgtaaggaggggtggattacataacaggggggttggcacgcttatgctata Alignment from Spaln_aa2Genome GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaaggaggggtggattacataacaggggggttggcacgcttatgctata Alignment from Spaln_nt2Genome GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaaggaggggtggattacataacaggggggttggcacgcttatgctata Alignment from Pairagon GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaaggaggggtggattacataacaggggggttggcacgcttatgctata Alignment from Exonerate_protein2genome GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaaggaggggtggattacataacaggggggttggcacgcttatgctata Alignment from Exonerate_coding2genome ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagacagctgatggagaaccagattggggctgtggaacgcggagcttttgatgatatgaaggagctagagcgcctgtaaggaggggtggattacataacaggggggttggcacgcttatgctata Alignment from GeneWise GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT ccactagcccaataagcgtagtgtaacttatccacattctctttttaaagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaaggaggggtggattacataacaggggggttggcacgcttatgctata #### Slk_ID10246_2 --> 0 - 0 Original Alignment GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc Alignment from CESAR GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc Alignment from Spaln_aa2Genome GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc Alignment from Spaln_nt2Genome GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc Alignment from Pairagon GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc Alignment from Exonerate_protein2genome GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc Alignment from Exonerate_coding2genome GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc Alignment from GeneWise GCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGATCACCCAAACATCGTCAAGCTTCTAGATGCCTTCTATTACGAGAACAACCTTTGG cattcaatgtgtaatgtatgctatcctggtgtgtaactttggcattccagGCCCAGAATAAAGAGACCAATGTTTTAGCTGCTGCAAAGGTGATTGACACCAAATCTGAAGAAGAGCTTGAAGATTATATGGTTGAGATTGACATATTAGCATCTTGTGACCACCCAAACATCATCAAGCTACTAGATGCCTTCTATTATGAGAATAACCTTTGGgtaagcgattttcattacaaagagcttggagcttattcgctgtgttatcc #### Slk_ID10250_6 --> 1 - 2 Original Alignment gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg gtttgatgactatcttaaatattttaaccaatctaacctgtctcctgcaggATGGCTCCTGAAGTAGTCATGTGTGAGACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCCCTGGGTATAACTTTAATAGAAATGGTTGAAATAGAGCCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATCTGAACCCCCAACACTAGCCCAGCCATCCAAAtggtaaattaatgcaaaagaacagctggccaactcaaaagtactttttgttt Alignment from CESAR gATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAAtg gtttgatgactatcttaaatattttaaccaatctaacctgtctcctgcaggATGGCTCCTGAAGTAGTCATGTGTGAGACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCCCTGGGTATAACTTTAATAGAAATGGTTGAAATAGAGCCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATCTGAACCCCCAACACTAGCCCAGCCATCCAAAtggtaaattaatgcaaaagaacagctggccaactcaaaagtactttttgttt Alignment from Spaln_aa2Genome AGCCGGATCTCTAAATTCTACCCTATTCCCACCTTACATTCCACTGGGTCA aagccattaatttgagaaaataatattgacctggaatctttctctccacag Alignment from Spaln_nt2Genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGC---- gtttgatgactatcttaaatattttaaccaatctaacctgtctcctgcagGATGGCTCCTGAAGTAGTCATGTGTGAGACATCCAAGGACACACCTTATGATTACAAAGCTGATgtttggtccctgggtataactttaatagaaatggttgaaatagagccacctcatcatgacttaaatcctatgcgtgtgctgctgaagattgcaaaatctgaacccccaacactagcccagccatccaaatggtaaattaatgcaaaagaacagctggccaactcaaaagtactttttgttt Alignment from Pairagon GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG gtttgatgactatcttaaatattttaaccaatctaacctgtctcctgcagGATGGCTCCTGAAGTAGTCATGTGTGAGACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCCCTGGGTATAACTTTAATAGAAATGGTTGAAATAGAGCCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATCTGAACCCCCAACACTAGCCCAGCCATCCAAATGgtaaattaatgcaaaagaacagctggccaactcaaaagtactttttgttt Alignment from Exonerate_protein2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG gtttgatgactatcttaaatattttaaccaatctaacctgtctcctgcagGATGGCTCCTGAAGTAGTCATGTGTGAGACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCCCTGGGTATAACTTTAATAGAAATGGTTGAAATAGAGCCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATCTGAACCCCCAACACTAGCCCAGCCATCCAAATGgtaaattaatgcaaaagaacagctggccaactcaaaagtactttttgttt Alignment from Exonerate_coding2genome GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG gtttgatgactatcttaaatattttaaccaatctaacctgtctcctgcagGATGGCTCCTGAAGTAGTCATGTGTGAGACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCCCTGGGTATAACTTTAATAGAAATGGTTGAAATAGAGCCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATCTGAACCCCCAACACTAGCCCAGCCATCCAAATGgtaaattaatgcaaaagaacagctggccaactcaaaagtactttttgttt Alignment from GeneWise GATGGCTCCTGAAGTAGTCATGTGTGAGACATCAAAGGACAGACCTTATGACTACAAAGCTGATGTTTGGTCCCTGGGTATTACTTTAATAGAAATGGCTGAGATAGAGCCACCTCATCATGAGTTAAATCCAATGCGCGTGCTGCTGAAAATTGCAAAATCTGAGCCCCCAACATTAGCACAGCCATCAAAATG gtttgatgactatcttaaatattttaaccaatctaacctgtctcctgcagGATGGCTCCTGAAGTAGTCATGTGTGAGACATCCAAGGACACACCTTATGATTACAAAGCTGATGTTTGGTCCCTGGGTATAACTTTAATAGAAATGGTTGAAATAGAGCCACCTCATCATGACTTAAATCCTATGCGTGTGCTGCTGAAGATTGCAAAATCTGAACCCCCAACACTAGCCCAGCCATCCAAATGgtaaattaatgcaaaagaacagctggccaactcaaaagtactttttgttt #### Slk_ID10252_8 --> 0 - 0 Original Alignment CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg Alignment from CESAR CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg Alignment from Spaln_aa2Genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg Alignment from Spaln_nt2Genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg Alignment from Pairagon CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg Alignment from Exonerate_protein2genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg Alignment from Exonerate_coding2genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg Alignment from GeneWise CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG catttcagtctctgtgtagggtgcctttataatacagttttcccttgtagCATCCCTTGGTTACCATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAAAGGCAGAAGTCACTGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtactgaccacctaatatcattaggacatgggggggtccatgagtcctgg #### Slk_ID10254_10 --> 0 - 2 Original Alignment GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCag tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCaggtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat Alignment from CESAR GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCag tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCaggtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat Alignment from Spaln_aa2Genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCAGgtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat Alignment from Spaln_nt2Genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCAGgtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat Alignment from Pairagon GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCAGgtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat Alignment from Exonerate_protein2genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCAGgtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat Alignment from Exonerate_coding2genome GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCAGgtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat Alignment from GeneWise GAGACAAGAAGACAGAAGAAAACATTGAAGAAAACACGCAAGTTTATTGTCGATGGTGTAGAAGTGAGTGTGACGACATCGAAGATAGTTACAGACAGCGACTCCAAAACGGAGGAACTGCGCTTTCTCAG tcaaggaggatttttacacaaaacctgaccctcctctctctgctccccagGGGACAAGAAGACAGAAAAAAACACTGAAGAAAACACGCAAGTTTATTGTTGATGGTGTGGAAGTGAGTGTGACAACATCAAAGATAGTTACAGATGGTGACTCCAAAACAGAGGAACTGTGCTTTCTCAGgtaagggagaaagggtagagaatcaacatcagttcttacatctgtgctat #### Slk_ID10256_12 --> 0 - 0 Original Alignment AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc Alignment from CESAR AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc Alignment from Spaln_aa2Genome AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc Alignment from Spaln_nt2Genome AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc Alignment from Pairagon AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc Alignment from Exonerate_protein2genome AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc Alignment from Exonerate_coding2genome AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc Alignment from GeneWise AGTAAGAAGCGACAATATGACCAAGAAATTGAGAATTTAGAGAAGCAGCAGAAACAGACAATTGAACGGCTAGAACAAGAGCACACTAACCGCCTGAGAGACGAAGCCAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTGCTGAAAAACCGCAAGAAGGAG tttctctgcagtccaggttgtatgttactctcacctctctctcttcctagAGCAAGAAGCGACAATATGACCAAGAAATTGAGACCTTAGAAAAGCAGCAGAAACAGACAATTGAGAGGCTAGAACAAGAGCACACTAACCATCTGAGGGACGAAGCAAAGCGCATCAAAGGAGAGCAGGAGAAGGAGCTGTCCAAGTTCCAGAATGTACTGAAAAACCGCAAGAAAGAGgtatgaaagacaatgctaggtatctgcatagctgctgaaatctgaaatgc #### Slk_ID10262_14 --> 0 - 1 Original Alignment GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAg actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAggtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat Alignment from CESAR GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAg actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAggtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat Alignment from Spaln_aa2Genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAGgtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat Alignment from Spaln_nt2Genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAGgtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat Alignment from Pairagon GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAGgtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat Alignment from Exonerate_protein2genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAGgtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat Alignment from Exonerate_coding2genome GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAGgtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat Alignment from GeneWise GAACAAGAATTTGTTCAGAAGCAACAACAAGAGTTAGATGGTTCTCTGAAAAAGATTATCCAGCAGCAGAAGGCAGAGTTGGCCAATATTGAGAGAGAATGCCTGAATAACAAGCAGCAGCTCATGAGAG actaaatgagataacaatatacatatcatgcttcttgggccatgccacagGAACAAGAATTTGTTCAAAAGCAACAGCAAGAGTTAGACGGTTCTCTTAAAAAGATTATCCAGCAACAAAAGGCAGAGTTGTCCAATGTTGAAAGGGAATGCCTCAATAACAAGCAGCAGCTCATGAGAGgtaggggggaattcacagcgtgacacagcttaacctgcagagtcctggat #### Slk_ID10263_15 --> 2 - 0 Original Alignment ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagctCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat Alignment from CESAR ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagctCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat Alignment from Spaln_aa2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat Alignment from Spaln_nt2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat Alignment from Pairagon CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat Alignment from Exonerate_protein2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat Alignment from Exonerate_coding2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat Alignment from GeneWise CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatctgtgtgctcttaatgttctagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGTTAAAACGCTACGAGAAGgtaagtgaaagggatttctctgctttgtagattgcacttctagagtttat #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag Alignment from Pairagon TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG catagagggacaagatgtgttattctataagcaatcttttctttctctagTTTGCCGCACAAGACAAAAAGCGAAAAAAAAATGAAAGAATGGCTCAGCATCAAAAGCATGAAAGCCATATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCGGGAATTACACCAGTTGCCAgtatgtcttcaaaaactggcaataacaaggaatgcattcatatagcttag #### Smarca2_ID5712_2 --> 0 - 1 Original Alignment CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAg ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAAcgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt Alignment from CESAR CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAg ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAAcgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt Alignment from Spaln_aa2Genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAACgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt Alignment from Spaln_nt2Genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAACgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt Alignment from Pairagon CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAACgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt Alignment from Exonerate_protein2genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAACgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt Alignment from Exonerate_coding2genome CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAACgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt Alignment from GeneWise CCCATGGATGGGATACATGACAAAGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGCACCAGCATGCGCCCCCCACACCCAGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCACAGCCAAG ggggaggacttctggtagtcactctaattaagcctatgcgactcttacagCCTATGGATGGGATACATGACAAAGGCATTGTAGAGGATGTCCACTGTGGATCTATGAAGGGCTCTAGCATGCGCCCCCCACACCCTGGAATGGGCCCTCCACAGAGCCCCATGGACCAGCATAGCCAACgtaagtggtccctgctaattagagcctgtctgcatactatgaaagaggtt #### Smarca2_ID5718_4 --> 2 - 2 Original Alignment gcCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACag caggaccctaccatctgacctgaccagctggtaactccttctgtttacagacCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATaggtgccacccagccacattcctaaacccaggggttgataattgcttcctgg Alignment from CESAR gcCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACag caggaccctaccatctgacctgaccagctggtaactccttctgtttacagacCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATaggtgccacccagccacattcctaaacccaggggttgataattgcttcctgg Alignment from Spaln_aa2Genome GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACAG caggaccctaccatctgacctgaccagctggtaactccttctgtttacagACCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATAGgtgccacccagccacattcctaaacccaggggttgataattgcttcctgg Alignment from Spaln_nt2Genome GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACAG caggaccctaccatctgacctgaccagctggtaactccttctgtttacagACCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATAGgtgccacccagccacattcctaaacccaggggttgataattgcttcctgg Alignment from Pairagon GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACAG caggaccctaccatctgacctgaccagctggtaactccttctgtttacagACCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATAGgtgccacccagccacattcctaaacccaggggttgataattgcttcctgg Alignment from Exonerate_protein2genome GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACAG caggaccctaccatctgacctgaccagctggtaactccttctgtttacagACCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATAGgtgccacccagccacattcctaaacccaggggttgataattgcttcctgg Alignment from Exonerate_coding2genome GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACAG caggaccctaccatctgacctgaccagctggtaactccttctgtttacagACCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATAGgtgccacccagccacattcctaaacccaggggttgataattgcttcctgg Alignment from GeneWise GCCCCGGGCAGGAGCTGCTACTGAGTGGCCAGAGCGCTCCGCAGAAGCTGTCAGCACCAGCACCAAGCGGCCGACCTTCACCGGCACCCCAGGCCGCCGTCCAGCCCACGGCCACAGCGGTGCCCGGGCCCTCCGTGCAGCAGCCCGCCCCAGGGCAGCCGTCTCCGGTCCTACAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCGGTGGAGATCCTGCAGGAACGAGAGTACAG caggaccctaccatctgacctgaccagctggtaactccttctgtttacagACCCTGGGCAGGAACTACTACTGAGTGGCCAGAGTGCCCCACACAAGCTCACGGCACCAGCACCGAGTGGTCGGCCTCTACCAGCACCACAGGCGGCTGTTCAGCCCACAGCCACAGCGGTGCCTGGACCGTCTGTTCAGCAGCCTGCCCCAGGGCAACCATCTCCAGTCCTGCAGCTGCAGCAGAAGCAGACACGCATCAGCCCCATACAGAAACCCCAAGGCCTGGATCCAGTGGAGATCCTGCAGGAACGAGAGTATAGgtgccacccagccacattcctaaacccaggggttgataattgcttcctgg #### Smarca2_ID5722_7 --> 0 - 0 Original Alignment GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct Alignment from CESAR GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct Alignment from Spaln_aa2Genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct Alignment from Spaln_nt2Genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct Alignment from Pairagon GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct Alignment from Exonerate_protein2genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct Alignment from Exonerate_coding2genome GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct Alignment from GeneWise GAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATATCACCGGTCTGTGGCCGGGAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGGAGGCTGATG ttgcatggatttgtccatggtgtaggtaaccctcctgtctccttccccagGAATACCTGAACAGTATTTTGCAACATGCGAAAGATTTTAAAGAATATCATCGATCTGTGGCTGGCAAGATCCAGAAGCTCTCCAAAGCAGTGGCGACTTGGCATGCTAACACAGAAAGGGAGCAGAGGAAGGAGACAGAGCGGATAGAGAAGGAGAGAATGCAGAGGCTAATGgtaagacagatgtatttatatatatacatggacatatggacacactggct #### Smarca2_ID5724_8 --> 0 - 0 Original Alignment GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt Alignment from CESAR GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt Alignment from Spaln_aa2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt Alignment from Spaln_nt2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt Alignment from Pairagon GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt Alignment from Exonerate_protein2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt Alignment from Exonerate_coding2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt Alignment from GeneWise GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtatcagtagcatactgtttaaaaccttgctgaactcagGCTGAAGATGAAGAGGGCTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACTTATTGCAACAGACTGATGAGTATGTTGCCAATCTCACCAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaagtttcaaccttcccttatttggatgaggaagaacctgtacctctgt #### Smarca2_ID5727_9 --> 0 - 0 Original Alignment AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat Alignment from CESAR AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat Alignment from Spaln_aa2Genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat Alignment from Spaln_nt2Genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat Alignment from Pairagon AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat Alignment from Exonerate_protein2genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat Alignment from Exonerate_coding2genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat Alignment from GeneWise AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acatatcgggtctcagtggtttctgtgtctcaggtgtctgccacccacagAAGGCTGAGGAGAATGCAGAGGGAGGGAAACCTGCCCTAGGATCAGATGGTGAAgtaagccccatgctggtcattcccttacacataaactaactttactttat #### Smarca2_ID5730_12 --> 0 - 2 Original Alignment GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTgagtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga Alignment from CESAR GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTgagtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga Alignment from Spaln_aa2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga Alignment from Spaln_nt2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga Alignment from Pairagon GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga Alignment from Exonerate_protein2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga Alignment from Exonerate_coding2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga Alignment from GeneWise GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgccttgagatacatgcctgatatcttcatttctgcttaccttttctcagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtaggcaggctttccatggcttttcataacaagtgtatttcagcatttga #### Smarca2_ID5732_14 --> 0 - 2 Original Alignment CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGtcgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta Alignment from CESAR CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCtc gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGtcgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta Alignment from Spaln_aa2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGTCgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta Alignment from Spaln_nt2Genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGTCgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta Alignment from Pairagon CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGTCgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta Alignment from Exonerate_protein2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGTCgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta Alignment from Exonerate_coding2genome CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGTCgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta Alignment from GeneWise CTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAACGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGTCCCTACCTCATCATCGTCCCCCTCTC gactacctgtttggaccttgacaattgatactctctgcctctaccctcagCTCCAGGGCCTGGAATGGATGGTTTCACTGTATAATAACAATCTGAACGGAATCTTGGCTGACGAAATGGGGCTAGGCAAGACCATCAAGACCATTGCACTCATCACATATCTGATGGAGCACAAAAGGCTGAATGGTCCCTACCTCATCCTCATCCCACTGTCgtaggaacaccaggagcagagaacctgttcccttcactaccccagcacta #### Smarca2_ID5739_17 --> 0 - 0 Original Alignment ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGGTGTTTAACACACATTATGTGGCCCCCAGGCACATCCTCCTGACTGGGACTCCACTGCAAAATAAGCTTCCAAAGCTCTGGGCACTCCTCAACTTCCTTCTACCTACAATCTTCAAGAGTTGCAGCGCATTTGAGCAGTGGTTTAATGCACCATTTGCCATGACCGGTGGGAGGgtaagagccaactagggattgtgttagggaatggggacctgcaggtgttt Alignment from CESAR ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGGTGTTTAACACACATTATGTGGCCCCCAGGCACATCCTCCTGACTGGGACTCCACTGCAAAATAAGCTTCCAAAGCTCTGGGCACTCCTCAACTTCCTTCTACCTACAATCTTCAAGAGTTGCAGCGCATTTGAGCAGTGGTTTAATGCACCATTTGCCATGACCGGTGGGAGGgtaagagccaactagggattgtgttagggaatggggacctgcaggtgttt Alignment from Spaln_aa2Genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAG GTCCTG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGgtgtttaacacacattatgtggcccccaggcacatcctcctgactgggactccactgcaaaataagcttccaaagctctgggcactcctcaacttccttctacctacaatcttcaagagttgcagcgcatttgagcagtggtttaatgcaccatttgccatgaccggtgggagggtaagagccaactagggattgtgttagggaatggggacctgcagGTGTTT Alignment from Spaln_nt2Genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAG GTCCTG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGgtgtttaacacacattatgtggcccccaggcacatcctcctgactgggactccactgcaaaataagcttccaaagctctgggcactcctcaacttccttctacctacaatcttcaagagttgcagcgcatttgagcagtggtttaatgcaccatttgccatgaccggtgggagggtaagagccaactagggattgtgttagggaatggggacctgcagGTGTTT Alignment from Pairagon ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGGTGTTTAACACACATTATGTGGCCCCCAGgcacatcctcctgactgggactccactgcaaaataagcttccaaagctctgggcactcctcaacttccttctacctacaatcttcaagagttgcagcgcatttgagcagtggtttaatgcaccatttgccatgaccggtgggagggtaagagccaactagggattgtgttagggaatggggacctgcaggtgttt Alignment from Exonerate_protein2genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGGTGTTTAACACACATTATGTGGCCCCCAGGCACATCCTCCTGACTGGGACTCCACTGCAAAATAAGCTTCCAAAGCTCTGGGCACTCCTCAACTTCCTTCTACCTACAATCTTCAAGAGTTGCAGCGCATTTGAGCAGTGGTTTAATGCACCATTTGCCATGACCGGTGGGAGGgtaagagccaactagggattgtgttagggaatggggacctgcaggtgttt Alignment from Exonerate_coding2genome ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGGTGTTTAACACACATTATGTGGCCCCCAGGCACATCCTCCTGACTGGGACTCCACTGCAAAATAAGCTTCCAAAGCTCTGGGCACTCCTCAACTTCCTTCTACCTACAATCTTCAAGAGTTGCAGCGCATTTGAGCAGTGGTTTAATGCACCATTTGCCATGACCGGTGGGAGGgtaagagccaactagggattgtgttagggaatggggacctgcaggtgttt Alignment from GeneWise ATTCGGTGGAAGTACATGATCGTGGACGAAGGCCACCGGATGAAGAATCACCACTGCAAGCTAACCCAGGTCCTGAACACACACTATGTGGCCCCCAGGCGGATCCTTCTGACTGGGACCCCACTGCAGAATAAGCTTCCGGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCATTTGCCATGACCGGTGAAAGG tgtactcatcatacattgacacaacatgttatgactctgtttattgtcagATTCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGGATGAAGAATCACCACTGCAAGTTAACTCAGGTGTTTAACACACATTATGTGGCCCCCAGGCACATCCTCCTGACTGGGACTCCACTGCAAAATAAGCTTCCAAAGCTCTGGGCACTCCTCAACTTCCTTCTACCTACAATCTTCAAGAGTTGCAGCGCATTTGAGCAGTGGTTTAATGCACCATTTGCCATGACCGGTGGGAGGgtaagagccaactagggattgtgttagggaatggggacctgcaggtgttt #### Smarca2_ID5743_20 --> 0 - 0 Original Alignment GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca Alignment from CESAR GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca Alignment from Spaln_aa2Genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca Alignment from Spaln_nt2Genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca Alignment from Pairagon GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca Alignment from Exonerate_protein2genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca Alignment from Exonerate_coding2genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca Alignment from GeneWise GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG gagaaataggaaatactcaacaattagtactgatatattttgtttctcagGGGAAAGGAGGTGCCAAAACACTTATGAACACCATCATGCAGCTCAGAAAAATCTGCAACCACCCATATATGTTTCAACACATTGAAgtattgctgccgcgtgtactctgctcttcggtgtgttagggaggcagaca #### Smc3_ID11321_9 --> 2 - 0 Original Alignment agGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagagGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt Alignment from CESAR agGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagagGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt Alignment from Spaln_aa2Genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt Alignment from Spaln_nt2Genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt Alignment from Pairagon AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt Alignment from Exonerate_protein2genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt Alignment from Exonerate_coding2genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt Alignment from GeneWise AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG gcaattgttcagcaccttcttctttgcatctccgcccttcctcctcacagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAAATGAGGCGTGCTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtagggactgcgttgttgctgaacaccttgcttatgaggtgagacgactt #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atactagtactctcatcacctttcatgatgagcaccacctctctttgcagGCGTTTCAAGATCTCCCAAACACATTGGATGAAATTGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCAgtaagccaccatatctttgctatccacccactgtttccatactgctgttt #### Smc5_ID5119_14 --> 0 - 0 Original Alignment GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct Alignment from CESAR GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct Alignment from Spaln_aa2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct Alignment from Spaln_nt2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct Alignment from Pairagon GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct Alignment from Exonerate_protein2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct Alignment from Exonerate_coding2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct Alignment from GeneWise GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG tatatcagacctcttattagttattcattttcttcatctttcccttttagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACGTCTGTGTACTCAAATAAAGTCATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAATgtaagttcattagattgggttcctaaactatcaacccgtgttttaaatct #### Smc5_ID5123_10 --> 2 - 0 Original Alignment gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccaggtGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact Alignment from CESAR gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccaggtGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact Alignment from Spaln_aa2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccagGTGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact Alignment from Spaln_nt2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccagGTGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact Alignment from Pairagon GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccagGTGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact Alignment from Exonerate_protein2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccagGTGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact Alignment from Exonerate_coding2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccagGTGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact Alignment from GeneWise GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG tattaggacatgctgtcttcagagaagttaaagtgattttttttctccagGTGTGAGTGATCATATTACACGGTTTGACAATCTTAAGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACATATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtaagttgtactcaaccacaaatctgtcttatacaggatcaacctttact #### Smc5_ID5124_9 --> 0 - 1 Original Alignment ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTagtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat Alignment from CESAR ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGa ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTagtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat Alignment from Spaln_aa2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat Alignment from Spaln_nt2Genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat Alignment from Pairagon ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat Alignment from Exonerate_protein2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat Alignment from Exonerate_coding2genome ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat Alignment from GeneWise ATTAAGGAACTTCAGCAGGCATTAACAGTCAAGCAGAATGAAGAGCTGGACCGGCAGAAGAGAATAAGTAACACCCGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAGACTGCGGAAAACTGCGAGAACCTTCAGCCTCAGATCGACACCGTCACAAATGATCTGAGGCGTGTGCAGGAGGAGAAAGCCTTATGTGAAGGCGAGATCATTGATAAACAGCGAGAAAAGGAAATGCTGGAGAAGCAGAGACGGA ttgaacctgcatgaaactgtcaaggatgaacagttaccttgtctctgcagATTAAGGAACTTCAGCAGGCATTGACAGTTAAACAGAATGAAGAGCTGGACCGACAGAAGAGAATAAGTAATACATGCAAGATGATAGAGGATCTGCAGAGTGAGCTCAAAACTGCAGAGAACTGTGAGAACCCTCAGCCTCAGATTGACACGATCACAAATGATCTGAGGCAAGTGCAGGAGGAGAAGGCCTTATGTGAAGGTGAGATCCTTGATAAACAGAGAGAAAAGGAAATGCTGGAAAAGCAGAGACGTAgtgagtttgaggggtgcaaaaaaatcatgtatagttgggaactgggatat #### Smc5_ID5125_8 --> 0 - 0 Original Alignment TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt Alignment from CESAR TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt Alignment from Spaln_aa2Genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt Alignment from Spaln_nt2Genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt Alignment from Pairagon TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt Alignment from Exonerate_protein2genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt Alignment from Exonerate_coding2genome TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt Alignment from GeneWise TCAACCGATATTAAGGAAGCATCTCAGAAATGCAAGCAAAGGCAAGACTTGATTGAACGGAAGGACAGACAG ccatgagtgtttaaactaaccatttcctatggcacagcctggtgttctagTCCACTGACATTAAGGAAGCATCTCAGAAATGTAAGCAAAGGCAAGACCTTATTGAACGGAAGGACAGGCAGgtaagtgtatgtcccaagaagagttagtctttgcaagggggcaaatggtt #### Smndc1_ID11278_4 --> 1 - 0 Original Alignment aAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagaAAAGCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat Alignment from CESAR aAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagaAAAGCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat Alignment from Spaln_aa2Genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagAAAAGCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat Alignment from Spaln_nt2Genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagAAAAGCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat Alignment from Pairagon AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagAAAAGCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat Alignment from Exonerate_protein2genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagAAAAGCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat Alignment from Exonerate_coding2genome AAAAGAAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagAAAAGCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat Alignment from GeneWise AAATGATCGCCCAGCAGCGTGAATATAAAAAGAAAAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAGTTGGAGCAGGAGCGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGGGCGTACTCCAAGAACAAGAAAGGCCAG ggctgtaaattttgcttttttgtggttgtaacaggcctctggggttgcagaaaagCAATGATTGCCCAACAGCGTGAATATAAAAAAAAAAAGGCTTTGAAGAAAGCACAGAGAATAAAAGAGTTAGAGCAGGAGCGAGAGGATCAGAAGGTGAAATGGCAACGGTTCAACAATAGGGCATACTCTAAGAACAAGAAGGGAGAGgtgagtacacccctcctcacatcatggtcttatgtaactgccattaaaat #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagaaCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca Alignment from CESAR agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagaaCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagAACTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagAACTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca Alignment from Pairagon AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagAACTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagAACTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagAACTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca Alignment from GeneWise AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG tccacccaacaccccattatcgatcttgtctcccctgctctgctgcacagAACTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaggcattactgtcagctacatcacaaagttgctcctacccagtttgca #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAggtgagccctgaaggattgcaacactccacccaacaccccattatcgatct Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAg gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAggtgagccctgaaggattgcaacactccacccaacaccccattatcgatct Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagccctgaaggattgcaacactccacccaacaccccattatcgatct Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCC---AGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagccctgaaggattgcaacactccacccaacaccccattatcgatct Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagccctgaaggattgcaacactccacccaacaccccattatcgatct Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagccctgaaggattgcaacactccacccaacaccccattatcgatct Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagccctgaaggattgcaacactccacccaacaccccattatcgatct Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAG---CGCTTCGAGCGCCTCTCTGACTCCGCCAAACAAG gcaacatccatgataaaattgttttgctttattcctctctctcctcatagGATCTATTGTACCGGCGGCTCCGGGCACTGGCTGAGTATGAGAATGCTAACAAAGCTCTTGACAAAGCTCGGACAAGGAACCATGAAGTATGGTCAGCAGAGAGCCGCCAGCAACTGTGCTGCCAGCAGCGCTTTGAGCGCCTCTCTGACTCTGCCAAACAAGgtgagccctgaaggattgcaacactccacccaacaccccattatcgatct #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcaggAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac Alignment from CESAR gAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcaggAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac Alignment from Spaln_aa2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcagGAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac Alignment from Spaln_nt2Genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcagGAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac Alignment from Pairagon GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcagGAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac Alignment from Exonerate_protein2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcagGAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac Alignment from Exonerate_coding2genome GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcagGAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac Alignment from GeneWise GAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGA tgcatgtgagggaacccttgagccccaggtgacattccatgtatcctcagGAGCTTTCTAAAGCTGGCAGAACTGTTTGAACGGCTGAGGgtgggtactaccttcaacactaggtcttctcaagtattgccaaggtgtac #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAAtgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAAtgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT actgcaccatacctcatacctggaaaagctcacgtcacttctgcttccagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGGGATACCTGCCAGAGAGCAGACCGTGTGATGCACTCCCACAAATgtgagttacatttgaggctggagcactgagtgcgcacattcatccaatta #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAgcgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAgc aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAgcgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAGGAGCTAGAAGC aagggtgggtgttgcgtcaaccctttgggactgctgtcttgtctccttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCGGAGCTAGAAGCgtatggatctccttcaccactcctgatttctctagggtctcctgagaaag #### Sorbs1_ID7901_21 --> 0 - 0 Original Alignment CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg Alignment from CESAR CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg Alignment from Spaln_aa2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg Alignment from Spaln_nt2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg Alignment from Pairagon CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg Alignment from Exonerate_protein2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg Alignment from Exonerate_coding2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg Alignment from GeneWise CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tccttcttctgctctgctttctttctctaataatgactgttttgtgatagCTCCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAATGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgtctctcaccccacctcatcatgagaacactctaatcctctggagaggtg #### Sorbs1_ID7903_19 --> 0 - 2 Original Alignment ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGaagtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt Alignment from CESAR ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGaa ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGaagtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt Alignment from Spaln_aa2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGAAgtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt Alignment from Spaln_nt2Genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGAAgtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt Alignment from Pairagon ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGAAgtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt Alignment from Exonerate_protein2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGAAgtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt Alignment from Exonerate_coding2genome ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGAAgtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt Alignment from GeneWise ATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAA ctttggttgccacccatgagttttaactctgaccacattttcttttacagATGAGACCTGCTCAAGCCAAGTTTGATTCTAAAGCCCAGACCCTGAAgtgggtttccagacatgcatgtctccttcggcacctgttcagaaagttgt #### Sorbs1_ID7911_15 --> 1 - 1 Original Alignment tATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAg gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagtATCTACTCCCCCACTTTCCATGCAGTGAAGAGAGAT------GGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCTCT---TCCACTAAAggtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg Alignment from CESAR tATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAg gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagtATCTACTCCCCCACTTTCCATGCAGTGAAGAGA------GATGGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCTCT---TCCACTAAAggtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg Alignment from Spaln_aa2Genome TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagTATCTACTCCCCCACTTTCCATGCAGTGAAGAGA------GATGGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCTCT---TCCACTAAAGgtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg Alignment from Spaln_nt2Genome TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagTATCTACTCCCCCACTTTCCATGCAGTGAAGAGA------GATGGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCT---CTTCCACTAAAGgtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg Alignment from Pairagon TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagTATCTACTCCCCCACTTTCCATGCAGTGAAGAGA------GATGGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCT---CTTCCACTAAAGgtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg Alignment from Exonerate_protein2genome TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagTATCTACTCCCCCACTTTCCATGCAGTGAAGAGA------GATGGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCTCT---TCCACTAAAGgtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg Alignment from Exonerate_coding2genome TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagTATCTACTCCCCCACTTTCCATGCAGTGAAGAGA------GATGGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCTCT---TCCACTAAAGgtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg Alignment from GeneWise TATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAG gttctacttgtcttccctgtctttctcttgactcctccatgtacctccagTATCTACTCCCCCACTTTCCATGCAGTGAAGAGA------GATGGGACCCCTGGGGGTTTGGCCAGCTTAGAAAATGAGAGACAGATCTATAAGAGTGTCCTAGAAGGTGGTGATATCCCCCTTCAAGGCCTTAGTGGGCTCAAGAGACCTTCTAGCTCT---TCCACTAAAGgtatgagctcaggtgaagactacaggcatgtctactttatgcctgttagg #### Sorbs1_ID7913_13 --> 0 - 0 Original Alignment ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac Alignment from CESAR ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac Alignment from Spaln_aa2Genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac Alignment from Spaln_nt2Genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac Alignment from Pairagon ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac Alignment from Exonerate_protein2genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac Alignment from Exonerate_coding2genome ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac Alignment from GeneWise ACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAG ttccctttaccttctctatcttggagtattttgggttccctatcgagtagACCAATCTAGAGAAAGATCTCAGCTTCTGCCAGGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACTGTTAATAAATCACCCAGTGCAAATTCCCCGCAGgtgatcccagttttcctctaggtgatagtcaccacctcaatgcagagcac #### Sorbs1_ID7914_12 --> 0 - 0 Original Alignment AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct Alignment from CESAR AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct Alignment from Spaln_aa2Genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct Alignment from Spaln_nt2Genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct Alignment from Pairagon AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct Alignment from Exonerate_protein2genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct Alignment from Exonerate_coding2genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct Alignment from GeneWise AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctgctaatattcttctcttactctcagtcagacttatttttaattttaagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtacagattgcttatgtcttgatgcatcttcatgtccacctctacctcct #### Sorbs1_ID7930_5 --> 2 - 0 Original Alignment atGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagggtatctgaaagcagttctctttgcagatGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg Alignment from CESAR atGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagggtatctgaaagcagttctctttgcagatGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg Alignment from Spaln_aa2Genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagggtatctgaaagcagttctctttgcagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg Alignment from Spaln_nt2Genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagggtatctgaaagcagttctctttgcagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg Alignment from Pairagon ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagggtatctgaaagcagttctctttgcagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg Alignment from Exonerate_protein2genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagggtatctgaaagcagttctctttgcagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg Alignment from Exonerate_coding2genome ATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagggtatctgaaagcagttctctttgcagATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg Alignment from GeneWise GCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAG gatgctacatctgtgggtgatagGGTATCTGAAAGCAGTTCTCTTTGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACTAATGGCAATGCCCAGCCCTCCCCACTTGCCTCCAAGGGTTATAGAAGTGTGCATCCCAGTCTTTCTGCTGACAAGCCCCAGgtaagctttagagctgcctagtctattggcttccagcagtctaaactctg #### Sorcs3_ID10557_4 --> 0 - 0 Original Alignment ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga Alignment from CESAR ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga Alignment from Spaln_aa2Genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga Alignment from Spaln_nt2Genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga Alignment from Pairagon ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga Alignment from Exonerate_protein2genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga Alignment from Exonerate_coding2genome ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga Alignment from GeneWise ATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGATGAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGGAGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAG ccctatcactcccttaacttgaagtttgttgttttgtgtgtttgtaatagATCATGCTCCTCAGTGATCCTGAGATGGAGAGCAGTAGACTAATCAGCTCAGATGAAGGGGCAACTTACCAAAAGTACAGGCTTACATTTTACATCCAGAGCCTTCTCTTCCACCCCAAGCAGGAGGACTGGGTGCTTGCTTACAGCTTAGACCAAAAGgtgagcaaacattgtgtttacagggagttactctcaggcaaaaaaattga #### Sorcs3_ID10597_8 --> 0 - 0 Original Alignment GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct Alignment from CESAR GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct Alignment from Spaln_aa2Genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct Alignment from Spaln_nt2Genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct Alignment from Pairagon GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct Alignment from Exonerate_protein2genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct Alignment from Exonerate_coding2genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct Alignment from GeneWise GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtgaacttgcgtctttgtctgatatgagattctcttgttttccagGTAACAATAGGTGGACGAGCCACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaagtcacatagtactacctgttttcttggaagctgttagaccaaggct #### Sorcs3_ID10630_20 --> 2 - 0 Original Alignment gtCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacaggtCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct Alignment from CESAR gtCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacaggtCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct Alignment from Spaln_aa2Genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacagGTCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct Alignment from Spaln_nt2Genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacagGTCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct Alignment from Pairagon GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacagGTCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct Alignment from Exonerate_protein2genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacagGTCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct Alignment from Exonerate_coding2genome GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacagGTCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct Alignment from GeneWise GTCCAGTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTGTGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAG cctgcttcgttccaggaatataaacaatagctgggcttgttcccgcacagGTCCAGTGGAACATGTTCACCTTCGAGTCCCATTTGTTGCAATACGGAATAAGGACGTCAACATCAGGGCAGTTGTGTGGCCCAGTCAGCTAGGGACTCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGgtgggtttcctgcttagattctcactactgcctaagaccaaatatgatct #### Sorcs3_ID10633_22 --> 2 - 0 Original Alignment aaTACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagaaTACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag Alignment from CESAR aaTACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagaaTACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag Alignment from Spaln_aa2Genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag Alignment from Spaln_nt2Genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag Alignment from Pairagon AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag Alignment from Exonerate_protein2genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag Alignment from Exonerate_coding2genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag Alignment from GeneWise AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA agccctgtctgatcccagtcctctccacccctctccttcctgctccacagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATTAAGAGAGCTCTGATCAAAgtgagatgcagtacttccaatgtcattcttgaactaagaaaaagaaacag #### Sptbn2_ID606_2 --> 2 - 0 Original Alignment atGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagatGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact Alignment from CESAR atGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagatGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact Alignment from Spaln_aa2Genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagATGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact Alignment from Spaln_nt2Genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagATGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact Alignment from Pairagon ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagATGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact Alignment from Exonerate_protein2genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagATGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact Alignment from Exonerate_coding2genome ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagATGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact Alignment from GeneWise ATGAGCGAGAAGCCGTGCAGAAGAAAACCTTCACCAAGTGGGTGAACTCCCACCTGGCCCGGGTGACATGCCGGGTGGGAGACCTGTACAGCGACCTGCGGGACGGGCGCAACCTCCTGAGGCTCCTGGAGGTGCTCTCGGGAGAGACCCTG gatttcttttggctgctcctgcctaaccacttgttttatgttacatgtagATGAAAGAGAGGCCGTACAGGAGAGAACCTTTACCAAGTGGGTGAACTCACATCTGGCTCGGGTAACATGTCGGTTAGGAGACCTGTACAGTGAACTTCGGGATGGGCGCAACCTCCTTAGACTACTGGAAGTGCTCTCAGGAGAGACGCTTgtaagttagagtaacccatggaagcaaggtactcactggtcaaggggact #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Exonerate_protein2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Exonerate_coding2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag #### Sptbn2_ID617_12 --> 0 - 1 Original Alignment GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAagtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc Alignment from CESAR GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAagtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc Alignment from Spaln_aa2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAAgtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc Alignment from Spaln_nt2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAAgtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc Alignment from Pairagon GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAAgtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc Alignment from Exonerate_protein2genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAAgtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc Alignment from Exonerate_coding2genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAAgtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc Alignment from GeneWise GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG gctacgtacagtggccagaagggcatcacccttttttttttttttttcagGGGCGACTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAGGACTTTCTGCAGTTACATGAACTAGTGGAGGCAGACATTGCAGTGCAGTCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTTCGAGGTTCTGTGACCCAGGCAAAAgtgattgctggggagagggaaatgtgctagaaaacagggaacatcagccc #### Sptbn2_ID618_13 --> 2 - 2 Original Alignment agTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACT------AGAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGag gataccatggtgcttaacactctggactattatcttgtttttgtaaacagagTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGGC---CTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGCA---TATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGaggtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg Alignment from CESAR agTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACT------AGAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGag gataccatggtgcttaacactctggactattatcttgtttttgtaaacagagTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGGC---CTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGCA---TATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGaggtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg Alignment from Spaln_aa2Genome AGTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACT------AGAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGAG gataccatggtgcttaacactctggactattatcttgtttttgtaaacagAGTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGGC---CTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGCA---TATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGAGgtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg Alignment from Spaln_nt2Genome AGTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACTA------GAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGAG gataccatggtgcttaacactctggactattatcttgtttttgtaaacagAGTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGG---CCTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGC---ATATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGAGgtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg Alignment from Pairagon AGTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACTA------GAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGAG gataccatggtgcttaacactctggactattatcttgtttttgtaaacagAGTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGG---CCTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGCA---TATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGAGgtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg Alignment from Exonerate_protein2genome AGTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACT------AGAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGAG gataccatggtgcttaacactctggactattatcttgtttttgtaaacagAGTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGGC---CTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGCA---TATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGAGgtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg Alignment from Exonerate_coding2genome AGTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACT------AGAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGAG gataccatggtgcttaacactctggactattatcttgtttttgtaaacagAGTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGGC---CTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGCA---TATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGAGgtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg Alignment from GeneWise AGTATAGGCCATGTGACCCACAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTGTGTGAATTGGCAGCGACT------AGAAGGGCCCGACTGGAAGAGTCACGTCGTCTCTGGAGGTTCCTCTGGGAAGTGGGTGAGGCTGAGGCCTGGGTCCGGGAGCAGCAGCACCTCCTGGCCTCAGCTGATACAGGCCGGGACCTGACTGGTGTCCTTCGCCTGCTCAACAAGCACGCAGCCCTACGGGGTGAGATGAGTGGCCGTCTGGGGCCCCTGAAGCTCACCCTGGAGCAAGGTCAGCAGTTAGTCGCTGAGGGCCACCCTGGAGCCAACCAAGCCTCAACCCGTGCAGCCGAGCTCCAGGCCCAGTGGGAGCGACTAGAAGCCCTGGCCGAGGAGCGAGCCCAGCAGCTGGCACAGGCTGCCAGCCTCTACCAGTTCCAGGCAGATGCAAATGACATGGAGGCCTGGTTGGTGGATGCACTGCGCCTGGTATCTAGCCCCGAGGTAGGGCACGACGAGTTCTCCACACAGGCCCTGGCCAGGCAGCACAGGGCCCTTGAAGAGGAGATCCGAGCCCACCGGCCTACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCCTGCCACCTGCACTGAGCCACACACCGGAGGTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGGAGCTGCAGGCCCGAGCCGGTGAGCGTGCACGAGCCCTGGAGGCAGCCCTGGCGTTCTATACCATGCTCAGCGAGGCTGGGGCCTGTGGCCTCTGGGTAGAGGAGAAGGAGCAATGGCTCAACGGGCTGGCCCTACCTGAGCGCCTGGAGGACCTGGAGGTGGTCCAGCAGAG gataccatggtgcttaacactctggactattatcttgtttttgtaaacagAGTATAGGCCATGTGACCCCCAGCTGGTGTCAGAGAGGGTGGCCACTCTGGAGCAGAGCTATGAGGCCCTCTGTGAACTGGCAGCCATTATATTCGGAAGGGCTCGGTTGGAGAGGTCACGTCATCTATGGAGGTTCCTTTGGGAAGTGGGTGAAGCTGAGACCTGGGTCCAGGAGCAACAGCACCTGCTGACCTCAGGTGACACAGGCCGGGATCTGACTGGTGTTCTTTGCCTGCTCAACAAGCACGCAGCACTACGGGGTGAGATGAGTGGC---CTAGGC---CTGAAGCTAACCCTGGAGCAGGGGCAGGAGCTGGTCACTGAGGGTCATCCTGGAGCCAACCAAGCCTCAAATCGTGCAGCTGAGTTACATGCTCAGTGGGAGCAACTAGAAGCGCTGGCTGAGGAGCATTCCCAGCAACTGGCACAGGCTGCCAGCCTCTATCAGTTCCAAGCTGACGCAAAGGACATGGAGGCTCGGCTAGTTGATTCGCTGCGCCTGGTATCTAGCCCTGAGGCAGGGCATGAAGAGTTCTCAACACAGGCCCTAGCCAGGCAGCACAGGGCCCTTGAAGAGGAAAACCGGGCACATCAGCCAACACTGGATGCCCTGAGGGAGCAGGCTGCAGCCTTGCCACCTGCACTAAGCCATACACTGGAGCTACAGGGCAGGGTGCCCACTCTGGAGCAGCACTATGAGAAACTCCAGGCTCGAGCTGGCAAACGAGCACGAGCCCTGGAAGGAGCTCTGGCA---TATACCATGCTCAGTGAGGCTGGGACCTGTGATCTATGGGTCGAGGAAAAGGAGCAATGGCTCAATGGGCTGGCCCTACCTGAGCGCCTAGAGGACCTGGAGGTGGTCCAGCAGAGgtacagcccattattctctttaaagtgcacactgtgcgggctaaatgagg #### Sptbn2_ID620_15 --> 1 - 0 Original Alignment gTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCGACC---ATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtaggTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg Alignment from CESAR gTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtaggTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg Alignment from Spaln_aa2Genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtagGTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg Alignment from Spaln_nt2Genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCGAC---CATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtagGTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg Alignment from Pairagon GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtagGTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg Alignment from Exonerate_protein2genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtagGTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg Alignment from Exonerate_coding2genome GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtagGTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg Alignment from GeneWise GTGGCAGCAGTTTCGGTCCCTGGCAGATGGCAAAAAGGCGGCTCTGACATCAGCCCTGAGCATCCAGAATTACCACCTAGAGTGCACAGAGACCCAGGCCTGGATGAGAGAGAAGACTAAGGTCATTGAGTCCACCCAGGGCCTGGGCAATGATCTAGCTGGTGTGCTGGCCCTGCAGCGGAAGTTGGCGGGTACTGAGAGAGATCTGGAAGCTATCTCTGCCCGGGTGGGTGAGCTGACCCAAGAGGCAAATGCCTTGGCTGCTGGGCACCCAGCTCAAGCTCCTGCCATCAACACCCGGCTTGGAGAGGTACAAGCAGGATGGGAAGATCTTCGGGCG---ACCATGAGGCGGAGAGAAGAGTCCCTGGGTGAGGCTCGGCGGCTGCAGGATTTCCTGCGCAGCTTGGATGACTTCCAGGCCTGGCTAGGCCGCACACAGACCGCTGTAGCCTCCGAAGAAGGGCCAGCCACCCTTCCCGAGGCAGAAGCCCTCTTAGCCCAGCACGCAGCTCTGCGGGGAGAAGTGGAGAGAGCCCAGAGCGAGTACAGCCGCCTCAGGACCTTGGGCGAGGAGGTGACCAGAGACCAGGCTGATCCCCAGTGCCTCTTCCTCAGACAGAGGCTGGAAGCCCTTGGAACCGGCTGGGAGGAGCTGGGTCGCATGTGGGAGAGCCGGCAAGGCCGCCTGGCCCAGGCCCATGGCTTCCAGGGGTTTTTAAGAGATGCTCGCCAGGCTGAGGGTGTTCTCAGCAGCCAG tttggcatggaagctacttggcacaccttgcttttcttcttaccctgtagGTGGCAGCAATTTCGGTCCCTGGCGGATGGCAAAAAGGCAACTCTGACATCTGCTTTGACCATCCAGAATTACCACTTAGAATGCACAGAAACCCAAGCCTGGATGAGAAAGAAGACTAAGGTGATTGAGTCCACCCAGGGCCTGGGCAATGGTCTAGCTGGGGTGCTGGCTTTGCAGCGAAAGCTGGCTGGTACTGCGAGAGATCTGGAAGCCATCTCTGCCCGTGTGGGTGAGTTGACTCAAGAAGCAAATGCCTCAGCTGCTGGGCACCCAGCCCAAACTCCTGCCATCAACACACGGCTTGGAGAGGTACAAGCAGGATGGGAAGATGTTCAGGCGACAACCATGAGACAAAGAGAAGAGTCTCTAGGTGAGGCCCGGCGCCTTCAGGATTTCTTTCGCAGCTTGGATGACTTCCAGGCATGGTTAGGCTGCACACAAACTGCTGTAGCCTCAGAAGAAGGGCCAGCTACCCTCCCTGAGGTAGAAGCCCTTTTAGCTCAGCATGCAGCTCTGCGGGGGGAAGTTGAGAGAGCCCAGAGTGAATACAGCCGCCTCAGAACCTTGGGTGAGGAAGTAACCCGAGACCAGGCAGACGCACAGTGCCTCTTCCTAAGGCAAAGACTGGAAGCTCTTGGAACCAGCTGGGAGCACTTGGGTCGCATGTGGGAGAGTCGGCAAGGCCATCTGGCCCAGGCCCATGGATTCCAGGGGTTTTTAAGAGATGCTCACCAGGCAGAAGGTGTTCTCAGCAGCCAGgtgagtgtctagaacaaagttttagtcaagaagaagaacatagtgcaggg #### Sptbn2_ID626_21 --> 0 - 0 Original Alignment TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from CESAR TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Spaln_aa2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Spaln_nt2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Pairagon TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Exonerate_protein2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from Exonerate_coding2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata Alignment from GeneWise TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG tatacatgttgggtggctgtggtgctattgctcatggaatatcccctcagTTGTGGGTGACAGAGCAGCTTCCTATGGCCAGCTCTCTGGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTTATGAAAAAAAACCAGgtaagtccaagagcaagtgcataaacagagtccaaaagagcatttttata #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccccttgcgagactttgcttgttcattttatgcctgatttcagACCTTGCAGAAGAAAATCCAGGGCCATGAGCCCCGGATTGCTGATCTCAAAGAGAGGCAACGAACTTTGAGGACAGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTTGAGGAGGCTCTTAGAACTCAGCAGTTTTATCATGATGCTGCAAAGGCTGAGGCCTGGATGGGTGACCGGGAGTTACACACAATGGGGCAAGAAAGGGCCAAAgtaggcgttaaggaatggctgtcttgctgcccattctcttactcccaaag #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgcaactcagccaacatttggatctgtatcgcttggatgtttttcagCCCCTGTTGGAACAGCAGAGACTTGAACAGGGCAATGTGCCTGAGGGACCTgtaattttagctaagggcttaagtacggatatcaaaagatgatgatgcaa #### Stambpl1_ID6900_7 --> 0 - 0 Original Alignment ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat Alignment from CESAR ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat Alignment from Spaln_aa2Genome ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat Alignment from Spaln_nt2Genome ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat Alignment from Pairagon ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat Alignment from Exonerate_protein2genome ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat Alignment from Exonerate_coding2genome ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat Alignment from GeneWise ACACACAATGAATTCACCATTACTCATGTGGTTGTGCCAAAGCAGTCTGCTGGCCCAGACTATTGCGATGTGGAGAACGTCGAAGAATTATTCAATGTTCAGGATCAACATGGTCTCCTCACACTGGGATGGATCCAT tctgtcactcctcatagatggctagtctatttatcctcctgttcctgtagACACACAATAAGTTCACTATTACTCATGTGGTGGTGCCAAGGCAGTCTGCTGGCCCAGACTATTGTGATGTAGAGAATGTTGAAAAATTATTCAATGTTCCAGACCAACAAGGTCTCCTCACACTAGGATGGATTCATgtaagtatggccctgtgtgtgtgagggccctgttgtgtatgagaaaacat #### Stip1_ID1992_9 --> 0 - 1 Original Alignment GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAg gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAggtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc Alignment from CESAR GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAg gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAggtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc Alignment from Spaln_aa2Genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAGgtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc Alignment from Spaln_nt2Genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAGgtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc Alignment from Pairagon GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAGgtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc Alignment from Exonerate_protein2genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAGgtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc Alignment from Exonerate_coding2genome GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAGgtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc Alignment from GeneWise GCAGAGAAAATTCTGAAGGAACAGGAGCGCTTGGCTTATATCAACCCTGACTTGGCTTTGGAGGAGAAGAACAAGGGCAACGAATGCTTCCAGAAAG gattagattactgtactaatgattttctgtaacctctgcttttttattagGCAGAGAAAATTCTAAGGGAACAGGAGCGACTGGCTTATATCAATCCAGACTTGACATTAGAGGAGAGGAACAAGAGCAATGAATGCTTCCAGAAAGgtgtgtccatgttccgtctgttggtgctgtggttcagtaaaatgataatc #### Stip1_ID1993_8 --> 1 - 0 Original Alignment aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg Alignment from CESAR aGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagaGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg Alignment from Spaln_aa2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg Alignment from Spaln_nt2Genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg Alignment from Pairagon AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg Alignment from Exonerate_protein2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg Alignment from Exonerate_coding2genome AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg Alignment from GeneWise AGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTCTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAG aatggtggaacttgcttttaacactcttctctggtctctggcatctgcagAGCTTATGCCCGAATTGGCAATTCCTATTTCAAAGAAGAAAAGTACAAGGATGCTATACATTTTTACAACAAGTCTCTAGCAGAGCACCGAACCCCAGATGTGCTCAAGAAGTGCCAGCAGgtaagcctgaaaagattatgccttgtccaaaaccttatacacaaggctgg #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgacttgtctggtttatatatttaactttaaatttattttttttaaagctGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from CESAR ctGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgacttgtctggtttatatatttaactttaaatttattttttttaaagctGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Pairagon CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca Alignment from GeneWise CTGTGCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgacttgtctggtttatatatttaactttaaatttattttttttaaagCTGTGCACTTTGAAAAGGGTGATTATAACGAATGCCGGGAACTCTGTGAGAAGGCTATAGAAGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtagaacataaaacccaaatgctaggacttgacgcctttcttgagtgcca #### Stx3_ID3298_8 --> 0 - 0 Original Alignment ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag Alignment from CESAR ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag Alignment from Spaln_aa2Genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag Alignment from Spaln_nt2Genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag Alignment from Pairagon ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag Alignment from Exonerate_protein2genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag Alignment from Exonerate_coding2genome ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag Alignment from GeneWise ATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAG gtctgctacggggggcagcccatggtttggtgattttcttttctcttcagATTATTGACTCACAGATTTACAAGCAAGCACTGAGTGAGATTGAGGGCCGACATAAAGACATTGTAAGACTTGAGAGCAGCATCAAGGAGCTCCACGAC---TTTATGGACATTGCCATGCTGGTGGAAAATCAGgtaagtggaatgtgggtaagcaagcacttcaactaaagtagctgcatcag #### Stx5a_ID2332_4 --> 2 - 0 Original Alignment tgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagtgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt Alignment from CESAR tgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagtgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt Alignment from Spaln_aa2Genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagTGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt Alignment from Spaln_nt2Genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagTGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt Alignment from Pairagon TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagTGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt Alignment from Exonerate_protein2genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagTGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt Alignment from Exonerate_coding2genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagTGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt Alignment from GeneWise TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agtcttaaaaccctgcaccctagcaagaaacccttttctctgttttgaagTGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTGACCTACATCATCAAACAGgtaagttgttaactgttacgaaagctgagcagcactgtggcaagcatagt #### Stx5a_ID2333_5 --> 0 - 0 Original Alignment GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGgtaagatatggcactaaaccaagggggggaaagcaaaataaattctctgt Alignment from CESAR GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGgtaagatatggcactaaaccaagggggggaaagcaaaataaattctctgt Alignment from Spaln_aa2Genome GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGgtaagatatggcactaaaccaagggggggaaagcaaaataaattctctgt Alignment from Spaln_nt2Genome GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGgtaagatatggcactaaaccaagggggggaaagcaaaataaattctctgt Alignment from Pairagon GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGgtaagatatggcactaaaccaagggggggaaagcaaaataaattctctgt Alignment from Exonerate_protein2genome GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGgtaagatatggcactaaaccaagggggggaaagcaaaataaattctctgt Alignment from Exonerate_coding2genome GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGgtaagatatggcactaaaccaagggggggaaagcaaaataaattctctgt Alignment from GeneWise GATATCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAGAGTGGCCGGCATCTGCAGACCCATTCTAACACCATTGTGGTTTCGTTGCAG-------------------------------------------------- acctccaaggccatgtgcaccatcacaggcacttctgcacttctccccagGATGTCAATAGCCTCAACAAACAAATTGCTCAGCTTCAAGATTTTGTGAGGGCCAAGGGCAGCCAAAGTGGCCGGCATCTGCAGACCCACTCTAACACCATTGTCGTTTCATTGCAGGTAAGATATGGCACTAAACCAAGGGGGGGAAAGCAAAATAAATTCTCTGT #### Stx5a_ID2334_6 --> 0 - 0 Original Alignment TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from CESAR TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Spaln_aa2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Spaln_nt2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Pairagon TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Exonerate_protein2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Exonerate_coding2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from GeneWise TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca #### Stx5a_ID2336_8 --> 2 - 0 Original Alignment gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacaggaGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca Alignment from CESAR gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacaggaGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca Alignment from Spaln_aa2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacagGAGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca Alignment from Spaln_nt2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacagGAGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca Alignment from Pairagon GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacagGAGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca Alignment from Exonerate_protein2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacagGAGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca Alignment from Exonerate_coding2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacagGAGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca Alignment from GeneWise GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcctgaacctcctctgagcaccagaatgtgggtatccttctttttacagGAGGGGGTCCCATAATCTTGGGAGCAGAGTCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtgagtatgctctagatcaggtgaagccaatctcgataaaccaaaattca #### Sufu_ID9891_3 --> 1 - 1 Original Alignment gTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAg tctccaaaggctcttgctgctcactagtattgacttctgtactttttcaggTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTggtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg Alignment from CESAR gTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAg tctccaaaggctcttgctgctcactagtattgacttctgtactttttcaggTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTggtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg Alignment from Spaln_aa2Genome GTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAG tctccaaaggctcttgctgctcactagtattgacttctgtactttttcagGTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTGgtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg Alignment from Spaln_nt2Genome GTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAG tctccaaaggctcttgctgctcactagtattgacttctgtactttttcagGTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTGgtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg Alignment from Pairagon GTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAG tctccaaaggctcttgctgctcactagtattgacttctgtactttttcagGTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTGgtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg Alignment from Exonerate_protein2genome GTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAG tctccaaaggctcttgctgctcactagtattgacttctgtactttttcagGTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTGgtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg Alignment from Exonerate_coding2genome GTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAG tctccaaaggctcttgctgctcactagtattgacttctgtactttttcagGTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTGgtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg Alignment from GeneWise GTTTACAGGAACAGACGGACCAAGTGGATTTGGCTTTGAGTTGACGTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCAG tctccaaaggctcttgctgctcactagtattgacttctgtactttttcagGTTTACTGGTACAGACGGACCAAGTGGATTTGGTTTTGAGTTGACATTTCGCCTGAAGAGAGAAACTGGGGAATCTGCTCCCCCCACTTGGCCAGCAGAGCTGATGCAGGGCCTAGCCCGATATGTCTTCCAGTCTGgtaaaaggccatgcatttgtgtgtttgtcctgttactgtcatgctgtttg #### Sufu_ID9909_10 --> 1 - 0 Original Alignment gGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcataggGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta Alignment from CESAR gGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcataggGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta Alignment from Spaln_aa2Genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcatagGGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta Alignment from Spaln_nt2Genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcatagGGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta Alignment from Pairagon GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcatagGGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta Alignment from Exonerate_protein2genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcatagGGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta Alignment from Exonerate_coding2genome GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcatagGGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta Alignment from GeneWise GGGCAGACTCCTACATGGCCGGCACTTCACCTACAAGAGTATCACAGGCGACATGGCCATCACGTTTGTGTCCACGGGAGTGGAAGGCGCCTTTGCCACTGAGGAACACCCGTATGCAGCTCACGGACCCTGGTTACAA tttgaggctcagatcccccactgtctcctttctctgcatcctcctcatagGGGCCGACTCCTACATGGCCAACATTTCAGCTACAAGAGTATCACAGGTGATATGGCAATCATATTTGTATCCATGGGAGTAAGAAGTGCCTTCGCCACTGAGGAACGCCCATACGCGGCTCATGGGCCCTGGTTACAAgtgagtactttccccactaggccaaggacaggcccctatggctcccatta #### Suv420h1_ID140_2 --> 2 - 2 Original Alignment gtCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTag atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcaggtCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCaggtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt Alignment from CESAR gtCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTag atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcaggtCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCaggtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt Alignment from Spaln_aa2Genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcagGTCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCAGgtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt Alignment from Spaln_nt2Genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcagGTCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCAGgtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt Alignment from Pairagon GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcagGTCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCAGgtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt Alignment from Exonerate_protein2genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcagGTCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCAGgtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt Alignment from Exonerate_coding2genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcagGTCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCAGgtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt Alignment from GeneWise GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG atctaaggaatctgccaccctcaatgttcatccccaccctttccttgcagGTCATGGAAATTCGGGACTTGAAGGGCAGAGCCGCTATGTATCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGACTTCACGACCAGTTTGGTTCTTGATCCCTACCTAGGTTTTCAGACACACAAAATGAATACCAGgtaactacggctctttctgtacataatgtaatgtgcttcaactaaagagt #### Syt12_ID537_3 --> 0 - 0 Original Alignment CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from CESAR CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Spaln_aa2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Spaln_nt2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTCA---TGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Pairagon CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTCA---TGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Exonerate_protein2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Exonerate_coding2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from GeneWise CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG ctcgcctcagtctcataatatacttttcctcaaacctgcatctctttcagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTCAGTCAACTGGGACCACTTGAGCTGATAGGCCAGGAACTTGACTTGGCCCCCTATGGTGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCTCAAGTGGAGGTGAGCATGGACTATGATGGGGCCTCCCACAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGCGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATTCTCCTGCCAGAGGAACAGATTGTTGGCATTTCCCGGgttaggggggtggggacagaggggtactgggcttcctgaagcttgcctag #### Syt7_ID2818_5 --> 1 - 2 Original Alignment gGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGag ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccaggGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGaggtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa Alignment from CESAR gGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGag ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccaggGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGaggtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa Alignment from Spaln_aa2Genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccagGGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGAGgtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa Alignment from Spaln_nt2Genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccagGGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGAGgtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa Alignment from Pairagon GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccagGGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGAGgtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa Alignment from Exonerate_protein2genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccagGGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGAGgtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa Alignment from Exonerate_coding2genome GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccagGGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGAGgtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa Alignment from GeneWise GGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGACTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAG ggggggctttctccaaccaccctggctagatcttgcgttcccaatcccagGGAGGGCCGGATGGTGGTGCTATCCCTTGTATTAGGGCTTTTGGAACAGGATGACTTTGCGAATATCCCAGACCTGCAAAACCCAGGAACCCAGCAGAACCAAAATGCTCAGGGGGACAAGAGgtgagctccagtactcactaggtacgggggaggcctgtgacagtggcaaa #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCtgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCtgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tcaggccgtcagaccagtggaggctttgagtgcgtgccccttccacacagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtgagtctgacctatggaatggtgacctatgtgtgctttgagtccctcac #### Syvn1_ID1389_8 --> 1 - 2 Original Alignment gCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACAct tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccaggCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACActgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg Alignment from CESAR gCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACAct tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccaggCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACActgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg Alignment from Spaln_aa2Genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccagGCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg Alignment from Spaln_nt2Genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccagGCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg Alignment from Pairagon GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccagGCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg Alignment from Exonerate_protein2genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccagGCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg Alignment from Exonerate_coding2genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccagGCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg Alignment from GeneWise GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccatgttgcccttcaacaccctgttccctgccccagGCACTTCAAGAAAGCTGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcactcgttctgaatactcacacacactctagaggtggttgagg #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaacagtgacctactgacttcttggggggtctgtccttagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATtgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaacagtgacctactgacttcttggggggtctgtccttagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATtgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacttcttggggggtctgtccttagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacttcttggggggtctgtccttagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacttcttggggggtctgtccttagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacttcttggggggtctgtccttagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacttcttggggggtctgtccttagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacttcttggggggtctgtccttagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTCTGCGGGCATCATTGCCAGCCCAGTTACCACCACCTCCTGAGCCTGCTGACCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTGCTGCCA---CCCCCTAATTgtaagagatatttcatagtgcagggccatctggacaagaaacttacccta #### Taf5_ID10094_3 --> 1 - 0 Original Alignment gTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcaggTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc Alignment from CESAR gTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcaggTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc Alignment from Spaln_aa2Genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc Alignment from Spaln_nt2Genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc Alignment from Pairagon GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc Alignment from Exonerate_protein2genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc Alignment from Exonerate_coding2genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc Alignment from GeneWise GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG attatccccagatacattcacataagaatgcacttgcctttgtccttcagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtaagtgagtttaccaagaatgctggaatgtgcaagaacagactgacagc #### Taf5_ID10096_4 --> 0 - 2 Original Alignment GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACaggtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from CESAR GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACaggtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Spaln_aa2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Spaln_nt2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Pairagon GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Exonerate_protein2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from Exonerate_coding2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc Alignment from GeneWise GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccgaaaacagtttaggagactttctcggctcttcagcagGTGTTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCGAATGCCCCACCTCAAAACAGgtatgtagtatataaaggttaaagctatggcgggaggactgaagtgggtc #### Taf5_ID10099_7 --> 2 - 2 Original Alignment atCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATag tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagatCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATaggtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga Alignment from CESAR atCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATag tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagatCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATaggtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga Alignment from Spaln_aa2Genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATAGgtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga Alignment from Spaln_nt2Genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATAGgtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga Alignment from Pairagon ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATAGgtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga Alignment from Exonerate_protein2genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATAGgtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga Alignment from Exonerate_coding2genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATAGgtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga Alignment from GeneWise ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG tgtgaataagagctctgacaaatttcacttcgctcttcctccctggacagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCTTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGATAGgtaggctccaaacaaaactaaatgtgctgccagactgaacttaggactga #### Taf5_ID10101_9 --> 1 - 0 Original Alignment gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacaggCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt Alignment from CESAR gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacaggCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt Alignment from Spaln_aa2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt Alignment from Spaln_nt2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt Alignment from Pairagon GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt Alignment from Exonerate_protein2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt Alignment from Exonerate_coding2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt Alignment from GeneWise GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG acctaaaatccctctctgctgcgttagaaccccttcccttaattttacagGCTTTGGACTACTGATCACTATCAACCTTTGAGGATATTTGCTGGTCATCTTGCTGATGTTAACTGCACTAGATTCCATCCTAATTCAAACTATGTCTCTACAGGCTCAGCAGACAGGACTGTGCGGCTCTGGGACGTCCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtatggcacaccttcaatattattttcctgtacataaatgcttccagagt #### Tbc1d10c_ID396_8 --> 2 - 0 Original Alignment ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacaggtGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat Alignment from CESAR ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacaggtGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat Alignment from Spaln_aa2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacagGTGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat Alignment from Spaln_nt2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacagGTGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat Alignment from Pairagon GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacagGTGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat Alignment from Exonerate_protein2genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacagGTGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat Alignment from Exonerate_coding2genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacagGTGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat Alignment from GeneWise GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cttgaggcaaatgccacttgttttcctggctctctcttcactctccacagGTGCTAAAGTATTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGTACTGTAGAGCAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCACTACGGGCCATTCCACCTACCCAACTACAAGAAGAGGTCTTCATGACTCAGgtaaggatccctctttgcgaatcattaatggtcctggctgtgctgcatat #### Tbc1d12_ID7687_10 --> 0 - 0 Original Alignment GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAAG---TGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa Alignment from CESAR GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAAG---TGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa Alignment from Spaln_aa2Genome GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAAG---TGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa Alignment from Spaln_nt2Genome GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAAG---TGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa Alignment from Pairagon GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAA---GTGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa Alignment from Exonerate_protein2genome GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAAG---TGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa Alignment from Exonerate_coding2genome GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAAG---TGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa Alignment from GeneWise GTCCAGGGGATGTCCTTCATCGCAGCCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTGCCAACTGGCCTTTTTCCGAGTGGATCACAGCATG ggcagggtgctcaagatcatatacaacaaccatgggtttttgttatttagGTCCAGGGGATGTCTTTCATTGCAGCAGTCCTCATCCTCAACCTGGAGGAAGCAGATGCTTTCATAGCATTTGCAAATCTCCTAAACAAG---TGCCGACTGGCTTTTTTCCGAGTGGATCACAGCATGgtatgtatatatgagatgaattccaaatgccatccttgtaggctttgaaa #### Tbc1d12_ID7688_11 --> 0 - 2 Original Alignment ATGTTGAAGTATTTTGCAACA------TTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATtggcaagtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag Alignment from CESAR ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATtggcaagtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag Alignment from Spaln_aa2Genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgcaagtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag Alignment from Spaln_nt2Genome ATGTTGAAGTATTTTGCAAC------ATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGA---TAGATTG ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgcaagtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag Alignment from Pairagon ATGTTGAAGTATTT------TGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATT---TGATAGATTG ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgcaagtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag Alignment from Exonerate_protein2genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgcaagtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag Alignment from Exonerate_coding2genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGgcaagtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag Alignment from GeneWise ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTGGATC ctgttttcatagacttctttgcaattcttgtttttttcccccaccctcagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAACTGTTTCTTCATTTCAAGTCATATAATCTGACACCAGATATATATTCAACAATAGATTGGCAAgtcactaagaaccatttaatatgatcaaatacaaatgtgaggcaag #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gattgcacagataatttcaggagactgctttgtataattttctcctctagGATGAGGACACAGATAAGCTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCCGATGAGGAGGAGGCTGGGAGCCCAGGGGAAGAAGAAACCGATgtacgtagaactatagttgctaaggatggcctgccaggccagattattgt #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtcagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtgagggcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagcTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagcacttctccctttgcaccttagGTCTT Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagcTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTT Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagCTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagcacttctccctttgcaccttagGTCTT Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagCTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagcacttctccctttgcaccttagGTCTT Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagCTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagcacttctccctttgcaccttagGTCTT Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagCTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagcacttctccctttgcaccttagGTCTT Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagCTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagcacttctccctttgcaccttagGTCTT Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttccacacaagaattacatgaacctatttttcagCTTTCATTGCCATGTCTTCTCATATCTGGAACAGGAGGAAGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAGCTTCAGGAGgtcagtgcctatgtaaactgaagcacttctccctttgcaccttagGTCTT #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAggtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAggtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAGgtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAGgtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAGgtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAGgtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAGgtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actacttaaggctactattgtttctgttacctcctgtgctcttcgcgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTTGGTCTGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCAGAGAGCAACCCTGCAGgtgagtccagtgcaggtgtgcactggccccttgccttcttttgtgagttt #### Tdrd1_ID12203_4 --> 2 - 2 Original Alignment ggTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAag tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagggTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAaggtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta Alignment from CESAR ggTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAag tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagggTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAaggtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta Alignment from Spaln_aa2Genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta Alignment from Spaln_nt2Genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta Alignment from Pairagon GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta Alignment from Exonerate_protein2genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta Alignment from Exonerate_coding2genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta Alignment from GeneWise GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaagcttacaggtacactgctgcccacttggctctgtattcacagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaaggactggcgccttcaacaagggctcagctgtgtctatcatattgta #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Exonerate_coding2genome ATAAATCACCATTTGAAACAAAGGCCATTGAAGTGAAGA------GTGAGGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG GACACATGGGAGCTGGGCTGCCTCAAGCTAAGAAAACGCTTTCTTTTCAGGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat #### Tdrd1_ID12207_8 --> 0 - 0 Original Alignment ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc Alignment from CESAR ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc Alignment from Spaln_aa2Genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc Alignment from Spaln_nt2Genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc Alignment from Pairagon ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc Alignment from Exonerate_protein2genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc Alignment from Exonerate_coding2genome ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc Alignment from GeneWise ACCTGGAACAGAGCCATAGTACAAGCCGTGGATGTGCTGCAGAGGAAGGCCCACGTCCTGTACATTGACTATGGGAACGAGGAGATGATCCCGATAGACAGCGTTCACCCGCTGAGCAGAGGCCTTGACTTGTTTCCTCCTTCT agctgtgtttaaagcacagcaaagtagactctttttttttccccccctagACTTGGAACAGAGCCATAGTACAAGCGCTGGATATATTGCACAGGAAGGCGCATATACTATACATGGACTATGGGAAAGAGGAGATGACCCCGATAGACAGTGTTCACCCACTAAGCAGAGGCCTTGATCTGTTTCCTCCTTCTgtaaggttctttccaaacctccaccagtatctttgatgtcctcttaggcc #### Tdrd1_ID12212_13 --> 2 - 1 Original Alignment agGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAg gcactatggcgggctaataggcctcagacctgccctgtggattcttttagagGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAggtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt Alignment from CESAR agGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAg gcactatggcgggctaataggcctcagacctgccctgtggattcttttagagGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAggtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt Alignment from Spaln_aa2Genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcactatggcgggctaataggcctcagacctgccctgtggattcttttagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAGgtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt Alignment from Spaln_nt2Genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcactatggcgggctaataggcctcagacctgccctgtggattcttttagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAGgtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt Alignment from Pairagon AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcactatggcgggctaataggcctcagacctgccctgtggattcttttagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAGgtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt Alignment from Exonerate_protein2genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcactatggcgggctaataggcctcagacctgccctgtggattcttttagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAGgtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt Alignment from Exonerate_coding2genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcactatggcgggctaataggcctcagacctgccctgtggattcttttagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAGgtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt Alignment from GeneWise AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcactatggcgggctaataggcctcagacctgccctgtggattcttttagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTGGGATATGTCGATTATGGGAACTTTGAGATTCTCAGCCTGAAAAGGCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGCGTGCTGGCAGgtaagctaaagcaggtacggaaagagtgcgggcagcctattttgagggtt #### Tdrd1_ID12217_18 --> 2 - 1 Original Alignment atATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAg aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagacTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAggtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg Alignment from CESAR atATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAg aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagacTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAggtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg Alignment from Spaln_aa2Genome ATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAG aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagACTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAGgtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg Alignment from Spaln_nt2Genome ATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAG aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagACTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAGgtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg Alignment from Pairagon ATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAG aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagACTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAGgtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg Alignment from Exonerate_protein2genome ATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAG aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagACTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAGgtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg Alignment from Exonerate_coding2genome ATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAG aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagACTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAGgtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg Alignment from GeneWise ATATACAGCCCCCAAACAAGCATTGGACAAAAGAGGCCACAGCAAGATTTCAAGCATGTGTTGTGGGGCTCAAACTCCAAGCCAGAGTTGTGGAAATCACCGCGAACGGCGTGGGCGTGGAGCTCACCGATCTTTCCACTCCTTACCCCAAAATCATTAGTGATGTGCTCATCAGAGAGCAGTTGGTCTTAAGGTGTGGTTCACCACAGGACTCACTGATGAGCAGACCTGCTAATCAACATAAGCAGATCGACAGCCACAGGGTGCAAG aagctcaccacatgcaatgacttcttttgctgaccccttcctcttcccagACTTACAGCCGCCTAACAAGCACTGGACAAAAGAGGCCACAGAAAGATTTCAAGCATGTGTTGTAGGGCTCCAACTTCAAGCCAGAGTTGTTGAAATCACTGCAAATGGTGTTGGTGTGGAACTCACTGATCTCTCCACTCCCCATCCCAAGATCATCAGTGATGCACTCATCAGAGAGCAACTGGTCCTACGATGTGGTTCACCACAGGACTCACTCATGAGCAGACCTGCAAATCAGCGGAATCAGATTGACAGCCACAGGGTGCAAGgtaagacctttgaaccatgggtgctccctttaaaccatgggtgctccagg #### Tdrd1_ID12219_20 --> 2 - 1 Original Alignment aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagaaAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGCA---AAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAagtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag Alignment from CESAR aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagaaAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGCA---AAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAagtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag Alignment from Spaln_aa2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagAAAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGCA---AAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAAgtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag Alignment from Spaln_nt2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagAAAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGC---AAAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAAgtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag Alignment from Pairagon AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagAAAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGC---AAAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAAgtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag Alignment from Exonerate_protein2genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagAAAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGCA---AAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAAgtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag Alignment from Exonerate_coding2genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagAAAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGCA---AAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAAgtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag Alignment from GeneWise AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccaagtgttttttccaaaatctagAAAACCAAGAGAAGCTGTGTGTATTAGTAGCTGAGCTGTTAGAACACTGTAATGCA---AAGGGGCGGCCAGCCTACAGACCACGGACTGGTGATGCTTGTTGTGCTAAATATACAAgtaagtttacttgtaagcggggcattgcagggcccttgtcttctgggaag #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTagtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTagtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from Exonerate_coding2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgacttcagctccatgggattggttgatgcttagttcctttttcaacagCTGCCCCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTGTTGTATATCCTCAAAAAAGCCCTCATTAgtaaccactataccctacccctagcctccacaaacaactctgtgttggcc #### Tex40_ID1869_3 --> 2 - 0 Original Alignment caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagccTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg Alignment from CESAR caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagccTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg Alignment from Spaln_aa2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg Alignment from Spaln_nt2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg Alignment from Pairagon CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg Alignment from Exonerate_protein2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg Alignment from Exonerate_coding2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg Alignment from GeneWise CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG ccatgacctgagaacctaacaaagactaaccgttatcttcttcattgcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtctgtggaaagaaccagggatactatcgttattggggagcggcaggtgg #### Tjp2_ID5264_22 --> 0 - 2 Original Alignment ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGaggtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat Alignment from CESAR ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGaggtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat Alignment from Spaln_aa2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGAGgtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat Alignment from Spaln_nt2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGAGgtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat Alignment from Pairagon ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGAGgtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat Alignment from Exonerate_protein2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGAGgtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat Alignment from Exonerate_coding2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGAGgtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat Alignment from GeneWise ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG atcagcattgccctaagtttctaaatgagattttctccattttgtcgcagATTGAAATAGCTCAGAAGCACCCTGACATCTATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCTGGCCTCCCCCCACACATGAGgtttgagttgtttggtggacaggtcaaaaggaagagcaccgtcagctaat #### Tjp2_ID5266_20 --> 0 - 0 Original Alignment AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca Alignment from CESAR AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca Alignment from Spaln_aa2Genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca Alignment from Spaln_nt2Genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca Alignment from Pairagon AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca Alignment from Exonerate_protein2genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca Alignment from Exonerate_coding2genome AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca Alignment from GeneWise AACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAG ttcctctgctagagcattcatggtgggcgtgacaagttccctgtccctagAACATAAGGAAATCCAGCCCAGAGCCACGAGCTCAGATGAGGAGGGCTGCTAGCAGAGACCAACTTAGGGATGCTAGCCCGCCCCCAGCCTTCAAGCCAGAGCCGCCCAAGgtgagtgcatgagaagcccatgagaggaagaggcagtgctttggagctca #### Tjp2_ID5267_19 --> 0 - 0 Original Alignment ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac Alignment from CESAR ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac Alignment from Spaln_aa2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac Alignment from Spaln_nt2Genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac Alignment from Pairagon ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac Alignment from Exonerate_protein2genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac Alignment from Exonerate_coding2genome ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac Alignment from GeneWise ATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTACTTAACCGCCATGGGCGCGGACTATCTGAGTTGTGACAGCCGTCTCATCAGTGACTTTGAAGACACCGACGGCGAGGGAGGCGCCTACACTGACAATGAGCTAGAGGAGCCGGCGGAGGAGCCGCTGGTGTCTTCCATCACCCGCTCCTCGGAGCCGGTGCAGCACGAGGAG cccaattgactctaagaataaatcacttatcttacttgcttttttcacagATGGAAGGGATGGATGATGATGCTGAAGACCGCATGTCCTATTTGACCGCCATGGGAGCAGACTATCTGAGCTGCGATAGCCGTCTCATCAGTGACTTTGAAGACACTGATGGCGAGGGAGGTGCCTACACTGACAATGAGCTAGAGGAGCCAGCTGAGGAGCCGCTTGTGTCTTCCATCACCCGCTCCTCAGAGCCAGTGCAACATGAGGAGgtgagtttagtacatgtggaaagtacccccaaagggttggagcccaggac #### Tjp2_ID5269_18 --> 2 - 0 Original Alignment ccACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagcaACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag Alignment from CESAR ccACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagcaACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag Alignment from Spaln_aa2Genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagCAACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag Alignment from Spaln_nt2Genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagCAACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag Alignment from Pairagon CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagCAACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag Alignment from Exonerate_protein2genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagCAACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag Alignment from Exonerate_coding2genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagCAACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag Alignment from GeneWise CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactggcctcatctctgtgttcgaacccctgtagCAACTATCAATGTGAATTCGGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAATGAAGCAGTCTGGGTCTCTGAAGGAAAGgtaaagggcatagattcacccaatgcttcctcgaagagtagtgaatgtag #### Tjp2_ID5270_17 --> 0 - 1 Original Alignment GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAggtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt Alignment from CESAR GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAggtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt Alignment from Spaln_aa2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt Alignment from Spaln_nt2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt Alignment from Pairagon GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt Alignment from Exonerate_protein2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt Alignment from Exonerate_coding2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt Alignment from GeneWise GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG tgatctttgactttgatgtcactatacatgctctctttgtttccatttagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTCCCTATTGTCATTTTCTTCAATCCAGACTCCAGACAAGGAGTTAAAACAATAAGGCAGAGGTTGAGTCCAACATCGAATAAAAGTTCTCGCAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtaaaagaaaccttgaataagccccatgcccagattgagcaatgagaagt #### Tjp2_ID5271_16 --> 2 - 0 Original Alignment aaACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagaaACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg Alignment from CESAR aaACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagaaACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg Alignment from Spaln_aa2Genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagAAACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg Alignment from Spaln_nt2Genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagAAACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg Alignment from Pairagon AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagAAACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg Alignment from Exonerate_protein2genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagAAACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg Alignment from Exonerate_coding2genome AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagAAACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg Alignment from GeneWise AAACAGAACCCAAAGATGCCGGATCTGAGAAATCCAGTGGAGTGGTTCGGTTGAATACCGTGAGGCAAATTATTGAGCAG gctgatttacctgaattctggtcaattgagttggatgcttttctttttagAAACAGAACCCAAAGATGCTGGTTCTAAGAAGTCCAGTGGAGTGGTTTGGCTGAATACCATAAGGCAAACTATTGAGCAGgtgagcaagcattccacaagctcatgttcctagctactggatgatggttg #### Tjp2_ID5272_15 --> 2 - 1 Original Alignment ctGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAa ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagctGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAagtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg Alignment from CESAR ctGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAa ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagctGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAagtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg Alignment from Spaln_aa2Genome CTGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAA ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagCTGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAAgtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg Alignment from Spaln_nt2Genome CTGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAA ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagCTGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAAgtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg Alignment from Pairagon CTGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAA ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagCTGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAAgtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg Alignment from Exonerate_protein2genome CTGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAA ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagCTGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAAgtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg Alignment from Exonerate_coding2genome CTGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAA ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagCTGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAAgtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg Alignment from GeneWise CTGGCTTCAAGAGACCCGTGGTTCTGTTTGGCCCCATAGCAGATATAGCAATGGAAAGGTTGGCAACTGAGTTACCAGACCTGTTTCAAACTGCAA ctttaggtatggattgtatgactctgattgtctttctctgtgatcaatagCTGGCTTCAAGAGACCTGTGGATCTGGTCGGCCCCATAGTGGACATTGCAATGGACAGGTTGGCAACTGAATTGCCAGATCTATTCCAAACCGCAAgtaggtgtgtcaacaaaatgtccaaataacctgcctggagccctgcttgg #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg tgattaagattttgttattccataaacccctgttgtttcactctctgcagcTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAggtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg tgattaagattttgttattccataaacccctgttgtttcactctctgcagcTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAggtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG tgattaagattttgttattccataaacccctgttgtttcactctctgcagCTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAGgtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG tgattaagattttgttattccataaacccctgttgtttcactctctgcagCTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAGgtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG tgattaagattttgttattccataaacccctgttgtttcactctctgcagCTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAGgtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG tgattaagattttgttattccataaacccctgttgtttcactctctgcagCTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAGgtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta Alignment from Exonerate_coding2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG tgattaagattttgttattccataaacccctgttgtttcactctctgcagCTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAGgtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG tgattaagattttgttattccataaacccctgttgtttcactctctgcagCTCAAGAGAGGAGACCTCAGGGAGACTATCAAGGATGGGTGCCACACCCACACCATTCAAGTATACAGGGGACATCACGGCTGCTGGAGTCACAGAGGCCAGTAAGGAGCCTAGGTACCAGGAAGAAGGCCCAGgtaggttgttacgctattcttttgcatgtatgttatacacaggctggtta #### Tjp2_ID5281_6 --> 2 - 0 Original Alignment agTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagagTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc Alignment from CESAR agTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagagTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc Alignment from Spaln_aa2Genome AGTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagAGTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc Alignment from Spaln_nt2Genome AGTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagAGTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc Alignment from Pairagon AGTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagAGTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc Alignment from Exonerate_protein2genome AGTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagAGTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc Alignment from Exonerate_coding2genome AGTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagAGTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc Alignment from GeneWise AGTATGGGCTCCGGCTGGGGAGTCAGATCTTCATCAAAGAAATGACCAGAACAGGACTGGCCACCAAAGATGGCAACCTTCATGAGGGGGACATAATTCTCAAG acaattcatgtgtcttatcacttgtcttcactcagtaactgttattttagAGTATGGGCTCAGGCTAGGGAGTCAAATCTTCATCAAAGAAATGACCAGAACAGGGCTGGCCACCAAAGATGGCAACCTTCATGAAGGGGACATAATTCTTAAGgtgagttttacaggtagtgctttcagatgatagagagagcacaaggttcc #### Tjp2_ID5284_3 --> 0 - 2 Original Alignment GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCaagtaattcctctccatccctaccccctagccgccctacacactaatatttg Alignment from CESAR GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTca cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCaagtaattcctctccatccctaccccctagccgccctacacactaatatttg Alignment from Spaln_aa2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCAAgtaattcctctccatccctaccccctagccgccctacacactaatatttg Alignment from Spaln_nt2Genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCAAgtaattcctctccatccctaccccctagccgccctacacactaatatttg Alignment from Pairagon GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCAAgtaattcctctccatccctaccccctagccgccctacacactaatatttg Alignment from Exonerate_protein2genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCAAgtaattcctctccatccctaccccctagccgccctacacactaatatttg Alignment from Exonerate_coding2genome GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCAAgtaattcctctccatccctaccccctagccgccctacacactaatatttg Alignment from GeneWise GATTCCAAAAGAGGATTTGGAATTGCCGTGTCGGGAGGCAGAGACAACCCCCACTTTGAAAATGGGGAGACGTCAATCGTCATCTCAGATGTGCTCCCAGGTGGACCCGCTGATGGCTTGCTTCA cctactgttcttatgtttcttttctcctccccgattgccttctctcgcagGATTCCAAAAAAGGATTTGGAATTGCTGTCTCAGGTGGCAAAGACAACCCCCACTTTGAAAATGGGGAGACATCAATTGTCATCTCAGATGTGCTCCCAGGTGGACCTGCTGATGGCTTGCTCAAgtaattcctctccatccctaccccctagccgccctacacactaatatttg #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCagtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCagtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc #### Tle4_ID3620_17 --> 1 - 0 Original Alignment gCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagaCAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc Alignment from CESAR gCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagaCAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc Alignment from Spaln_aa2Genome GCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagACAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc Alignment from Spaln_nt2Genome GCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagACAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc Alignment from Pairagon GCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagACAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc Alignment from Exonerate_protein2genome GCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagACAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc Alignment from Exonerate_coding2genome GCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagACAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc Alignment from GeneWise GCAATTCCAGGGGCACACAGATGGAGCCAGCTGTATTGACATTTCTAATGATGGCACCAAGCTCTGGACAGGTGGTTTGGACAACACTGTGAGGTCCTGGGACCTGCGTGAAGGGCGGCAGCTGCAGCAACATGACTTCACCTCTCAG gtatcagaagattcagttgtaagacaacctctctcgtcctgtctcttcagACAATTCCAGGGGCATACTGATGGAGCCAGTTGTATTGACATTTCTAATGATGGTACCAAGCTCTGGACAGGAGGTCTGGAAAACACTGTTCGGCCTTGGGAGCTGCATGAAGGCCAACAACTACAGCAACATGACTTCACCTCCCTTgtgagttgtgtgtgagggaggtgacttgttaagagaaagtgtggtggctc #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagcgTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagcgTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaggaaggtgcaactaactttttctgcctcctctcttgttcttccagCGTCAAGCCTGAGGACCCCAGTAGCTGTACCTTGTCCATATCCAACTCCATTTGGGATTGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGGGCTGCTTATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCTTCTACTGCTGCAGCCGCAGCAGCAGCAGCCTATGGAAGATCACCCGTGgtgagttttacatacatttataattgttttagaatgcacagtacttcatt #### Tll2_ID8104_15 --> 2 - 0 Original Alignment tgGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagtgGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc Alignment from CESAR tgGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagtgGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc Alignment from Spaln_aa2Genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagTGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc Alignment from Spaln_nt2Genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagTGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc Alignment from Pairagon TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagTGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc Alignment from Exonerate_protein2genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagTGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc Alignment from Exonerate_coding2genome TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagTGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc Alignment from GeneWise TGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCTGGATGGCCGAAGGAGTATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCCGTGCAGTACCGCATCTCACTGCAGTTCGAAGCCTTTGAGCTGGAAGGCAATGAC aaagctggcaacccaaaacaggcgaatccagtgacctacatctgttccagTGGCCTGTGGTGGCTTCATTACCAAGCTAAACGGCACCATCACCAGCCCCGGATGGCCGAAGGAGCATCCCACCAACAAGAACTGTGTCTGGCAGGTGGTGGCTCCTGTGCAGTACCGCATCTCACTGCAGTTCAAAGCCTTTGAGTTGGAAGGCAATGATgtaagaaatctcagatgtagcagcatttctgaccatgttgatgctatatc #### Tll2_ID8105_14 --> 2 - 1 Original Alignment agGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAg tgaacttccattttggtgacagtttagatatccaccccatccccctccagagGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAggtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata Alignment from CESAR agGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAg tgaacttccattttggtgacagtttagatatccaccccatccccctccagagGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAggtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata Alignment from Spaln_aa2Genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacttccattttggtgacagtttagatatccaccccatccccctccagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata Alignment from Spaln_nt2Genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacttccattttggtgacagtttagatatccaccccatccccctccagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata Alignment from Pairagon AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacttccattttggtgacagtttagatatccaccccatccccctccagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata Alignment from Exonerate_protein2genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacttccattttggtgacagtttagatatccaccccatccccctccagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata Alignment from Exonerate_coding2genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacttccattttggtgacagtttagatatccaccccatccccctccagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata Alignment from GeneWise AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacttccattttggtgacagtttagatatccaccccatccccctccagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTAAACACACTCGGCACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgtgtgttggaacttttaggttacagcaatgagaaactacttagtgata #### Tll2_ID8119_7 --> 2 - 2 Original Alignment gtCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAag ttactggaactactttatttttatgacccagtctatctctgttttgtcaggtCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAaggtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca Alignment from CESAR gtCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAag ttactggaactactttatttttatgacccagtctatctctgttttgtcaggtCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAaggtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca Alignment from Spaln_aa2Genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ttactggaactactttatttttatgacccagtctatctctgttttgtcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca Alignment from Spaln_nt2Genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ttactggaactactttatttttatgacccagtctatctctgttttgtcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca Alignment from Pairagon GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ttactggaactactttatttttatgacccagtctatctctgttttgtcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca Alignment from Exonerate_protein2genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ttactggaactactttatttttatgacccagtctatctctgttttgtcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca Alignment from Exonerate_coding2genome GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ttactggaactactttatttttatgacccagtctatctctgttttgtcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca Alignment from GeneWise GTCAGGAGTATAATTTCTTAAAAATGGAAGCCGGCGAGGTGAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAG ttactggaactactttatttttatgacccagtctatctctgttttgtcagGTCAGGAGTATAATTTCTTAAAAATGGAAGCTGGCGAGGTAAGCTCTCTGGGAGAGACCTACGACTTCGACAGCATCATGCACTATGCCCGGAACACCTTCTCAAGgtgagcattatttctaggacaaaaactagcaaacacaaagaacattgaca #### Tll2_ID8125_3 --> 2 - 1 Original Alignment gaGGCCTTGAGGAGACATCTGCAAGGTGGCCAAAC---GATACAGCCTCT---AACGCCAGCATCCAGGCACCAAGAAAGg cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcaggcGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGggtacgttatgggaggccaaacccagactttctctgtttcatatatccttc Alignment from CESAR gaGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGAT---ACAGCCTCTAAC---GCCAGCATCCAGGCACCAAGAAAGg cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcaggcGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGggtacgttatgggaggccaaacccagactttctctgtttcatatatccttc Alignment from Spaln_aa2Genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAAC------GCCAGCATCCAGGCACCAAGAAAGG cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcagGCGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGGgtacgttatgggaggccaaacccagactttctctgtttcatatatccttc Alignment from Spaln_nt2Genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGA---TACAGCCTCTA---ACGCCAGCATCCAGGCACCAAGAAAGG cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcagGCGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGGgtacgttatgggaggccaaacccagactttctctgtttcatatatccttc Alignment from Pairagon GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACG---ATACAGCCTCTA---ACGCCAGCATCCAGGCACCAAGAAAGG cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcagGCGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGGgtacgttatgggaggccaaacccagactttctctgtttcatatatccttc Alignment from Exonerate_protein2genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGAT---ACAGCCTCTAAC---GCCAGCATCCAGGCACCAAGAAAGG cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcagGCGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGGgtacgttatgggaggccaaacccagactttctctgtttcatatatccttc Alignment from Exonerate_coding2genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGAT---ACAGCCTCTAAC---GCCAGCATCCAGGCACCAAGAAAGG cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcagGCGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGGgtacgttatgggaggccaaacccagactttctctgtttcatatatccttc Alignment from GeneWise GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGAT---ACAGCCTCTAAC---GCCAGCATCCAGGCACCAAGAAAGG cctcactactaaaggtatctgcctttacatagttctgtcttcctcttcagGCGGACTTGAGGAGACACCAGCAAGGTGGCTAAATGACAATACAGCCTCTACATATGCAAGCATCAAGGCCCCACGAAAGGgtacgttatgggaggccaaacccagactttctctgtttcatatatccttc #### Tm7sf2_ID1415_5 --> 2 - 0 Original Alignment gaAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacaggaAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga Alignment from CESAR gaAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacaggaAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga Alignment from Spaln_aa2Genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacagGAAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga Alignment from Spaln_nt2Genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacagGAAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga Alignment from Pairagon GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacagGAAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga Alignment from Exonerate_protein2genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacagGAAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga Alignment from Exonerate_coding2genome GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacagGAAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga Alignment from GeneWise GAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGACTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGG gcaaagatgcatgcatccctggtgagtgtgcacgcctccactgtccacagGAAATTCCATGTATGATTTCTTTCTTGGGCGTGAGTTGAATCCTCACCTTGATTCCTTTGACTTCAAGTATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGgtgaggcaacatgctgaacttgagtctgttagacttacgtcataagaaga #### Tm9sf3_ID8146_4 --> 2 - 0 Original Alignment gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtaggcATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac Alignment from CESAR gtATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtaggcATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac Alignment from Spaln_aa2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac Alignment from Spaln_nt2Genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac Alignment from Pairagon GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac Alignment from Exonerate_protein2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac Alignment from Exonerate_coding2genome GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac Alignment from GeneWise GTATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTACTATCTTTGGACCTACAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATTGTTGATGTTAATCTAACTAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATATTCG tttgatagctaggcactcatacattgcactatattttctctttcctgtagGCATTGTTGGTGAAGCAGATGAAAATGGGGAAGATTATTACCTTTGGACCTATAAAAAACTTGAAATAGGCTTTAATGGAAATCGAATGGTTGATGTTAATTTAATAAGTGAAGGAAAGGTCAAGCTGGTTCCAAATACTAAAATACAGATGTCATACTCAgtgagttttcaagtcattatttatagcaaaaagaggttgtgttagcaaac #### Tmc1_ID4823_18 --> 1 - 0 Original Alignment cCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagcCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac Alignment from CESAR cCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagcCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac Alignment from Spaln_aa2Genome CCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagCCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac Alignment from Spaln_nt2Genome CCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagCCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac Alignment from Pairagon CCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagCCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac Alignment from Exonerate_protein2genome CCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagCCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac Alignment from Exonerate_coding2genome CCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagCCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac Alignment from GeneWise CCTGACCATCTATTATCTCAATGCTACTGCCAAGGGCCAGAAAGCAGCGAATCTGGACCTCAAAAAGAAGATGAAACAG gtaaataatccaaattgcaaattaccccgggtactaaccctttcccatagCCTTACTATCTATTATCTCAATGCTACTGCAAAGGGCCAGAAAGCAGCAAATCTGGACCTCAAAAGAAAGATGAAACAGgtaagtcagtagtcagtttacaaaacaacaaggggagacatgtgcctgac #### Tmc1_ID4827_15 --> 0 - 2 Original Alignment CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCtg attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCtggtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg Alignment from CESAR CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCtg attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCtggtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg Alignment from Spaln_aa2Genome CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCTG attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCTGgtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg Alignment from Spaln_nt2Genome CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCTG attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCTGgtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg Alignment from Pairagon CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCTG attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCTGgtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg Alignment from Exonerate_protein2genome CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCTG attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCTGgtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg Alignment from Exonerate_coding2genome CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCTG attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCTGgtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg Alignment from GeneWise CCTTCATACACAGAATTCGACATCAGTGGCAACGTCCTCGCTCTGATCTTCAACCAAGGCATGATCTG attgggttcgttactttgagaagctaagggtcatatctgtcatcttacagCCTTCATACACAGAATTCGACATCACTGGCAATGTACTCGCACTTATCTTCAACCAAGGCATGATCTGgtaaagcagctattgggctccttgtaagtcaacaaatcagatgaatagtg #### Tmc1_ID4830_13 --> 0 - 0 Original Alignment ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTT---TTTCATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat Alignment from CESAR ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat Alignment from Spaln_aa2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat Alignment from Spaln_nt2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTTTT---TCATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat Alignment from Pairagon ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTTT---TTCATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat Alignment from Exonerate_protein2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat Alignment from Exonerate_coding2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat Alignment from GeneWise ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG tttcggtgatctatcattgccatttctatgcatttttttttaaactgcagATTGAAGATGAGAAACTTGTCAGGGCCAACATTACCCTGTGGGATGCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACCCCACAGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATTATGGTGGGCCAGgtaggtgtacagagagaagtacctatcccaatgggctgcctgcttcatat #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa #### Tmem180_ID9861_3 --> 1 - 2 Original Alignment gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcaggACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTgggtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc Alignment from CESAR gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcaggACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTgggtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc Alignment from Spaln_aa2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcagGACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTGGgtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc Alignment from Spaln_nt2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcagGACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTGGgtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc Alignment from Pairagon GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcagGACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTGGgtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc Alignment from Exonerate_protein2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcagGACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTGGgtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc Alignment from Exonerate_coding2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcagGACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTGGgtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc Alignment from GeneWise GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTGGCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG gagccacctgggtgtagaaattatccctagtgaaaatgtatcgtttgcagGACAGGAGCAGGGCTCTCCTCAAGGGATGTGGTGTTGACCCGGGTACGGGCTCTAGGCTGGCATGGGCCACTGCTGGCATTGGCATTCCTTGCCTTTTGGGTCTCCTGGGCCCCTGCTGGCTTACAATTCTTGTTGTGCCTGTGCCTCTATGATAGCTTCCTGACCCTTGTGGACCTCCACCATCACGCTTTGCTAGCGGACCTGGCACTATCATCCCGTGATCATACCCACCTCAATTTTTATTGCTCCCTTTTCAGTGCTGCTGGTTCCTTGTCCGTCTTTGCCTCTTATGCCTTTTGGAATAAGGAGGATTTCTCCTCCTTCCTGGCCTTTTGTGTGGTACTTGCTGCCGGCTCTGGACTGGGCTTTCTGGGCACCACACAATTATTGAAGTGGCAGATTGAACCATCCAGAAGGGACAGGGGTTGCCCAGGCCTGGACCTAGATGGTGGgtgagcaactaccttggcttgagatactgatttaatcacccaccctaggc #### Tmem180_ID9863_5 --> 0 - 1 Original Alignment GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGg cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGggtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc Alignment from CESAR GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGg cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGggtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc Alignment from Spaln_aa2Genome GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGGgtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc Alignment from Spaln_nt2Genome GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTT---CTGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGGgtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc Alignment from Pairagon GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTT---CTGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGGgtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc Alignment from Exonerate_protein2genome GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGGgtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc Alignment from Exonerate_coding2genome GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGGgtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc Alignment from GeneWise GTGTTCCACTGTCACTTCAACAGTAACTTCTTCCCCCTCTTCCTGGAACACTTGCTGTCTGACCACATCTCCCTGTCCACTGGCTCCTTCCTGTTGG cctgtgtactctcatgtaaatcttcccatgtccctttctcgtctccccagGTGTTC---TGCCACTTTAAC---AACTTCTTCCCTCTATTCCTGGAACACTTGCTGTCTGACCATATCTCCTTGTTGACTGGCTCATTCCTCTTGGgtgagtggttcctccagacaggcatcaggagctcccgtcggctgcccctc #### Tmem180_ID9864_6 --> 2 - 2 Original Alignment gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacaggcATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCaggtgaggccaacctggtcttgaccctgtacctctatagccacttattcttt Alignment from CESAR gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGG---------------CGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacaggcATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCaggtgaggccaacctggtcttgaccctgtacctctatagccacttattcgcc Alignment from Spaln_aa2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacagGCATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCAGgtgaggccaacctggtcttgaccctgtacctctatagccacttattcttt Alignment from Spaln_nt2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTG---------------CCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacagGCATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCAGgtgaggccaacctggtcttgaccctgtacctctatagccacttattcttt Alignment from Pairagon GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCT---------------GCCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacagGCATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCAGgtgaggccaacctggtcttgaccctgtacctctatagccacttattcttt Alignment from Exonerate_protein2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacagGCATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCAGgtgaggccaacctggtcttgaccctgtacctctatagccacttattcttt Alignment from Exonerate_coding2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacagGCATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCAGgtgaggccaacctggtcttgaccctgtacctctatagccacttattcttt Alignment from GeneWise GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTG---------------TGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattgctcaagtcttcttcccgctttggccacagGCATTTCCTATGTTGCTCCTCATCTTAACAACCTCTATTTCCTGCCCCTGTGCCGACGGCCCCTGTGCCGACGCTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTGATGCTGCTGGCTGGGCCAGACCATCCTGGCCTGCTTTGCTTCTTCATTGCCAGgtgaggccaacctggtcttgaccctgtacctctatagccacttattcttt #### Tmem2_ID4943_5 --> 2 - 1 Original Alignment gaATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAg tccttatgcatgaatacccacatatttaaatggcctctttgattctacagggATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGggtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc Alignment from CESAR gaATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAg tccttatgcatgaatacccacatatttaaatggcctctttgattctacagggATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGggtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc Alignment from Spaln_aa2Genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG tccttatgcatgaatacccacatatttaaatggcctctttgattctacagGGATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGGgtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc Alignment from Spaln_nt2Genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG tccttatgcatgaatacccacatatttaaatggcctctttgattctacagGGATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGGgtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc Alignment from Pairagon GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG tccttatgcatgaatacccacatatttaaatggcctctttgattctacagGGATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGGgtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc Alignment from Exonerate_protein2genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG tccttatgcatgaatacccacatatttaaatggcctctttgattctacagGGATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGGgtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc Alignment from Exonerate_coding2genome GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG tccttatgcatgaatacccacatatttaaatggcctctttgattctacagGGATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGGgtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc Alignment from GeneWise GAATCTCCCTCTCAGGCTTCCGGGTGGACATTGCGGATGGAGTGAAGCTTCACCTGTTGGACGACGTCAGCACTTGGGAAGCTGGAGACCGAATTGTGGTGGCCAGCACCGACTATTCCATGTACCAAGCAGAGGAGCTAACTCTTCTCCGCTGCCCCGAGTGCAGCCGTTCTCAGGTCAAAGTCAAAG tccttatgcatgaatacccacatatttaaatggcctctttgattctacagGGATCTCCCTCTCTGGCTTTCGGGTGGACATCGCAGATGGAGTAAAGCTTCACCTGTTGGATGATATCAGCACCTGGGAAGCTGGAGACCAAATTGTCGTGGCCAGCACTGACTATTCTATGTACCAAGCAGAGGAGTTAACTCTTCTACATTGCCCTAAGTGCAGTTGTTCTCAGGTTAAAGTCAAGGgtaatgaacttctcagctgacgttgggatagcaccctgggatcccatggc #### Tmem2_ID4949_10 --> 0 - 0 Original Alignment GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG tttcttttttagactggcacttttaatgtgctgtcctgctgttcttacagGATGTTGGGATCTGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCTTGGAGAAGCCTGAGCTTACTCCACTAGGGATCTTTTATAATAACAGGGTTCATTCAAACTTTAAGgtaccattctaaatagaaatggatgcttgcacagagtggattccacctct Alignment from CESAR GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG tttcttttttagactggcacttttaatgtgctgtcctgctgttcttacagGATGTTGGGATCTGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCTTGGAGAAGCCTGAGCTTACTCCACTAGGGATCTTTTATAATAACAGGGTTCATTCAAACTTTAAGgtaccattctaaatagaaatggatgcttgcacagagtggattccacctct Alignment from Spaln_aa2Genome GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG tttcttttttagactggcacttttaatgtgctgtcctgctgttcttacagGATGTTGGGATCTGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCTTGGAGAAGCCTGAGCTTACTCCACTAGGGATCTTTTATAATAACAGGGTTCATTCAAACTTTAAGgtaccattctaaatagaaatggatgcttgcacagagtggattccacctct Alignment from Spaln_nt2Genome GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG tttcttttttagactggcacttttaatgtgctgtcctgctgttcttacagGATGTTGGGATCTGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCTTGGAGAAGCCTGAGCTTACTCCACTAGGGATCTTTTATAATAACAGGGTTCATTCAAACTTTAAGgtaccattctaaatagaaatggatgcttgcacagagtggattccacctct Alignment from Pairagon GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG tttcttttttagactggcacttttaatgtgctgtcctgctgttcttacagGATGTTGGGATCTGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCTTGGAGAAGCCTGAGCTTACTCCACTAGGGATCTTTTATAATAACAGGGTTCATTCAAACTTTAAGgtaccattctaaatagaaatggatgcttgcacagagtggattccacctct Alignment from Exonerate_protein2genome GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG tttcttttttagactggcacttttaatgtgctgtcctgctgttcttacagGATGTTGGGATCTGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCTTGGAGAAGCCTGAGCTTACTCCACTAGGGATCTTTTATAATAACAGGGTTCATTCAAACTTTAAGgtaccattctaaatagaaatggatgcttgcacagagtggattccacctct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGCTGGAATATGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCCTGGAGAAGCCAGAACTCACTCCGCTGGGGATATTTTATAACAACAGGGTTCATTCAAATTTTAAG tttcttttttagactggcacttttaatgtgctgtcctgctgttcttacagGATGTTGGGATCTGGTATTTATTCCACAAGGAACCAACTGGGGAGTCCAGTGGGCTGCAGCTCTTGGAGAAGCCTGAGCTTACTCCACTAGGGATCTTTTATAATAACAGGGTTCATTCAAACTTTAAGgtaccattctaaatagaaatggatgcttgcacagagtggattccacctct #### Tmem2_ID4962_19 --> 1 - 0 Original Alignment gTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtggactaccaatatcagcgtggaaacttgtttctctctaggTTATTGTTTTTGTATCTCAGAGCCCACAGCCATAGGGATGGCCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAATTGCATGGCCAAAGCATATCCGCAGTATTACAGAAAGCCTTCAGCAGTCAAGCACATGCCAGCCATGCTCACAGGACTTTGTCAAGGTTGTGGAACCCACCAAgtgaggagtgaagtaggagcaggtcattggaaaagtaactatctattcta Alignment from CESAR gTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtggactaccaatatcagcgtggaaacttgtttctctctaggTTATTGTTTTTGTATCTCAGAGCCCACAGCCATAGGGATGGCCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAATTGCATGGCCAAAGCATATCCGCAGTATTACAGAAAGCCTTCAGCAGTCAAGCACATGCCAGCCATGCTCACAGGACTTTGTCAAGGTTGTGGAACCCACCAAgtgaggagtgaagtaggagcaggtcattggaaaagtaactatctattcta Alignment from Spaln_aa2Genome GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtggactaccaatatcagcgtggaaacttgtttctctctagGTTATTGTTTTTGTATCTCAGAGCCCACAGCCATAGGGATGGCCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAATTGCATGGCCAAAGCATATCCGCAGTATTACAGAAAGCCTTCAGCAGTCAAGCACATGCCAGCCATGCTCACAGGACTTTGTCAAGGTTGTGGAACCCACCAAgtgaggagtgaagtaggagcaggtcattggaaaagtaactatctattcta Alignment from Spaln_nt2Genome GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtggactaccaatatcagcgtggaaacttgtttctctctagGTTATTGTTTTTGTATCTCAGAGCCCACAGCCATAGGGATGGCCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAATTGCATGGCCAAAGCATATCCGCAGTATTACAGAAAGCCTTCAGCAGTCAAGCACATGCCAGCCATGCTCACAGGACTTTGTCAAGGTTGTGGAACCCACCAAgtgaggagtgaagtaggagcaggtcattggaaaagtaactatctattcta Alignment from Pairagon GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtggactaccaatatcagcgtggaaacttgtttctctctagGTTATTGTTTTTGTATCTCAGAGCCCACAGCCATAGGGATGGCCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAATTGCATGGCCAAAGCATATCCGCAGTATTACAGAAAGCCTTCAGCAGTCAAGCACATGCCAGCCATGCTCACAGGACTTTGTCAAGGTTGTGGAACCCACCAAgtgaggagtgaagtaggagcaggtcattggaaaagtaactatctattcta Alignment from Exonerate_protein2genome GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtggactaccaatatcagcgtggaaacttgtttctctctagGTTATTGTTTTTGTATCTCAGAGCCCACAGCCATAGGGATGGCCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAATTGCATGGCCAAAGCATATCCGCAGTATTACAGAAAGCCTTCAGCAGTCAAGCACATGCCAGCCATGCTCACAGGACTTTGTCAAGGTTGTGGAACCCACCAAgtgaggagtgaagtaggagcaggtcattggaaaagtaactatctattcta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtggactaccaatatcagcgtggaaacttgtttctctctagGTTATTGTTTTTGTATCTCAGAGCCCACAGCCATAGGGATGGCCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAATTGCATGGCCAAAGCATATCCGCAGTATTACAGAAAGCCTTCAGCAGTCAAGCACATGCCAGCCATGCTCACAGGACTTTGTCAAGGTTGTGGAACCCACCAAgtgaggagtgaagtaggagcaggtcattggaaaagtaactatctattcta #### Tnks2_ID7181_2 --> 2 - 1 Original Alignment gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccaggcTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTggtacaactatattttttagattttctgcgagttgtaattatcctgagatg Alignment from CESAR gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccaggcTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTggtacaactatattttttagattttctgcgagttgtaattatcctgagatg Alignment from Spaln_aa2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtacaactatattttttagattttctgcgagttgtaattatcctgagatg Alignment from Spaln_nt2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtacaactatattttttagattttctgcgagttgtaattatcctgagatg Alignment from Pairagon GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtacaactatattttttagattttctgcgagttgtaattatcctgagatg Alignment from Exonerate_protein2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtacaactatattttttagattttctgcgagttgtaattatcctgagatg Alignment from Exonerate_coding2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtacaactatattttttagattttctgcgagttgtaattatcctgagatg Alignment from GeneWise GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG acatttcttcacattgtgataatcatctccctctctgcctgtcgcaccagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTCAATCTTCTCTTACAACACGGTGCAGATCCAAACGCTCGGGATAATTGGAATTATACTCCTCTCCACGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtacaactatattttttagattttctgcgagttgtaattatcctgagatg #### Tnks2_ID7183_4 --> 2 - 2 Original Alignment gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag ggatttacctttggaaagattctaagcagttttgctctcactcactgcaggtGACTATAAAAAAGATGAACTTCTTGAAAGTGCCaggtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat Alignment from CESAR gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag ggatttacctttggaaagattctaagcagttttgctctcactcactgcaggtGACTATAAAAAAGATGAACTTCTTGAAAGTGCCaggtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat Alignment from Spaln_aa2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttacctttggaaagattctaagcagttttgctctcactcactgcagGTGACTATAAAAAAGATGAACTTCTTGAAAGTGCCAGgtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat Alignment from Spaln_nt2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttacctttggaaagattctaagcagttttgctctcactcactgcagGTGACTATAAAAAAGATGAACTTCTTGAAAGTGCCAGgtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat Alignment from Pairagon GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttacctttggaaagattctaagcagttttgctctcactcactgcagGTGACTATAAAAAAGATGAACTTCTTGAAAGTGCCAGgtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat Alignment from Exonerate_protein2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttacctttggaaagattctaagcagttttgctctcactcactgcagGTGACTATAAAAAAGATGAACTTCTTGAAAGTGCCAGgtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat Alignment from Exonerate_coding2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttacctttggaaagattctaagcagttttgctctcactcactgcagGTGACTATAAAAAAGATGAACTTCTTGAAAGTGCCAGgtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat Alignment from GeneWise GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttacctttggaaagattctaagcagttttgctctcactcactgcagGTGACTATAAAAAAGATGAACTTCTTGAAAGTGCCAGgtgagcatttatgtaaaatctacacactctgaagacctgacactgacaat #### Tnks2_ID7186_7 --> 1 - 0 Original Alignment gGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagcGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata Alignment from CESAR gGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagcGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata Alignment from Spaln_aa2Genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagCGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata Alignment from Spaln_nt2Genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagCGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata Alignment from Pairagon GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagCGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata Alignment from Exonerate_protein2genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagCGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata Alignment from Exonerate_coding2genome GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagCGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata Alignment from GeneWise GGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTATGAAGTAACTGAACTTCTGGTCAAG tgctcccaactctccaaacctcggattctttccctccctcccatccccagCGACCTGGTACCTCTACATAACGCCTGCTTGTATGGGCATTATGAAGTAACTGAACTTCTAGTCAAGgtaagcttgtgtgcgtcttagtactaaagggatgcaaaacgtacaatata #### Tnks2_ID7187_8 --> 0 - 1 Original Alignment CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGt cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCAtgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag Alignment from CESAR CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGt cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCAtgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag Alignment from Spaln_aa2Genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCATgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag Alignment from Spaln_nt2Genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCATgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag Alignment from Pairagon CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCATgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag Alignment from Exonerate_protein2genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCATgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag Alignment from Exonerate_coding2genome CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCATgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag Alignment from GeneWise CACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAACCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATCGT cttcatagtgttaaaaagtgtgaacagttctggtatcttgtgcctctcagCACAGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCTCTTCATGAAGCAACTTCTAAGAACAGGATTGAAGTATGCTCTCTCCTTCTGAGCTATGGGGCAGATCCAACCCTGCTGAACTGCCACAATAAAAGTGCCATAGATCTAGCCTCCACATCACATCTGAAGGAAAGATTATCATgtaattgggaagtgacacacagcatatgaatagcagtgagtgtattctag #### Tnks2_ID7188_9 --> 2 - 0 Original Alignment atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagatGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg Alignment from CESAR atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagatGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg Alignment from Spaln_aa2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg Alignment from Spaln_nt2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACA------TCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg Alignment from Pairagon ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACA------TCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg Alignment from Exonerate_protein2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAA------AAACATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg Alignment from Exonerate_coding2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAA------AAACATCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg Alignment from GeneWise ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG ttaccatatgcaggatatcaacatgttgcttggtgcctcctcttggccagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGAGAAACTGGTGTTACAAGAATCAAAAAACAGAAACGTCTCCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtacggtttcatacatgagcttttaaaatacatattataccctgaagttg #### Tnks2_ID7190_11 --> 1 - 0 Original Alignment aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagaTTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca Alignment from CESAR aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagaTTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca Alignment from Spaln_aa2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca Alignment from Spaln_nt2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca Alignment from Pairagon ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca Alignment from Exonerate_protein2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca Alignment from Exonerate_coding2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca Alignment from GeneWise ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tgttttttttctctacagaaataatgccgataatcccacctgtgttccagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCACAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtgagtcccatctctgacttctggtcattcagtcgggtaatctttgtgca #### Tnks2_ID7194_15 --> 1 - 0 Original Alignment aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG attactgagattacaaattactcagatagatttttgtttccctatttcagaGGGCTGGTACCTTTACACAATGCATGCTCTTACGGACACTATGAAGTTGCTGAACTACTGGTCAAGCATGGAGCTGTAGTGAATGTAGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGTAAACTTTTACTTCAAgtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct Alignment from CESAR aGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG attactgagattacaaattactcagatagatttttgtttccctatttcagaGGGCTGGTACCTTTACACAATGCATGCTCTTACGGACACTATGAAGTTGCTGAACTACTGGTCAAGCATGGAGCTGTAGTGAATGTAGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGTAAACTTTTACTTCAAgtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct Alignment from Spaln_aa2Genome attactgagattacaaattactcagatagatttttgtttccctatttcagagggctggtacctttacacaatgcatgctcttacggacactatgaagttgctgaactactggtcaagcatggagctgtagtgaatgtagctgacttgtggaaattcacacctttacatgaagctgcagcaaaaggaaaatatgaaatatgtaaacttttacttcaagtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct Alignment from Spaln_nt2Genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG attactgagattacaaattactcagatagatttttgtttccctatttcagAGGGCTGGTACCTTTACACAATGCATGCTCTTACGGACACTATGAAGTTGCTGAACTACTGGTCAAGCATGGAGCTGTAGTGAATGTAGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGTAAACTTTTACTTCAAgtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct Alignment from Pairagon AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG attactgagattacaaattactcagatagatttttgtttccctatttcagAGGGCTGGTACCTTTACACAATGCATGCTCTTACGGACACTATGAAGTTGCTGAACTACTGGTCAAGCATGGAGCTGTAGTGAATGTAGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGTAAACTTTTACTTCAAgtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct Alignment from Exonerate_protein2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG attactgagattacaaattactcagatagatttttgtttccctatttcagAGGGCTGGTACCTTTACACAATGCATGCTCTTACGGACACTATGAAGTTGCTGAACTACTGGTCAAGCATGGAGCTGTAGTGAATGTAGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGTAAACTTTTACTTCAAgtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct Alignment from Exonerate_coding2genome AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG attactgagattacaaattactcagatagatttttgtttccctatttcagAGGGCTGGTACCTTTACACAATGCATGCTCTTACGGACACTATGAAGTTGCTGAACTACTGGTCAAGCATGGAGCTGTAGTGAATGTAGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGTAAACTTTTACTTCAAgtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct Alignment from GeneWise AGGTCTTGTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAGTAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGCAAACTTCTACTCCAG attactgagattacaaattactcagatagatttttgtttccctatttcagAGGGCTGGTACCTTTACACAATGCATGCTCTTACGGACACTATGAAGTTGCTGAACTACTGGTCAAGCATGGAGCTGTAGTGAATGTAGCTGACTTGTGGAAATTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAATATGTAAACTTTTACTTCAAgtgagtttaagtactcactatgggtaatacctcaagggcccagttaatct #### Tnks2_ID7200_21 --> 0 - 1 Original Alignment ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAg tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAggtaagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from CESAR ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAg tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAggtaagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Spaln_aa2Genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtaagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Spaln_nt2Genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtaagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Pairagon ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtaagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Exonerate_protein2genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtaagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Exonerate_coding2genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtaagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from GeneWise ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG tttataacctcatcatctttatgccaaagctagaactttctttcttctagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtaagatacattataagatggtagtaaattcatccatgatttatgagaag #### Trim8_ID9934_3 --> 0 - 0 Original Alignment GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAG ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAGgtaagagtgaaagctctattacagattgcctatctatgggtatttgcctt Alignment from CESAR GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAG ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAGgtaagagtgaaagctctattacagattgcctatctatgggtatttgcctt Alignment from Spaln_aa2Genome GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAG ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAGgtaagagtgaaagctctattacagattgcctatctatgggtatttgcctt Alignment from Spaln_nt2Genome GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAG ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAGgtaagagtgaaagctctattacagattgcctatctatgggtatttgcctt Alignment from Pairagon GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAG ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAGgtaagagtgaaagctctattacagattgcctatctatgggtatttgcctt Alignment from Exonerate_protein2genome GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAG ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAGgtaagagtgaaagctctattacagattgcctatctatgggtatttgcctt Alignment from Exonerate_coding2genome GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAG ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAGgtaagagtgaaagctctattacagattgcctatctatgggtatttgcctt Alignment from GeneWise GAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGCTGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGCGCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAGAAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAGAACACCAAGTCTGTGAAA ccatagaatcagaaatagagttaggattgggcccctctcctttcttccagGAGAAAGTGAGCCATCTGAAGGAGGAACTGCGGCTTCAGTTTGAAAAGCTTCATCAACTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTACTGGACAAAGTGCAAGCTAAGTTCTGCAGTCAGAATGCAGCACAGGCACTGCACCTTGGGGAGCGCATGCAAGAAGCTAAGAAGCTCCTTGGCTCCCTGCAGCGAATCTTTGACAAGACAGAGGATATTGGCTTCATGAAG------------GTAAGAgtgaaagctctattacagattgcctatctatg #### Trim8_ID9935_4 --> 0 - 2 Original Alignment AACACCAAGTCTGTGAAAATCCTAATGGACag aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagAACACCAAGTCTGTGAAAATCCTAATGGACaggtgaggtaaggcgcctcatcttccagaacacgaatgtcttaatgccctta Alignment from CESAR AACACCAAGTCTGTGAAAATCCTAATGGACag aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagAACACCAAGTCTGTGAAAATCCTAATGGACaggtgaggtaaggcgcctcatcttccagaactgcttcttgggccatgccaca Alignment from Spaln_aa2Genome AACACCAAGTCTGTGAAAATCCTAATGGACAG aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtgaggtaaggcgcctcatcttccagaacacgaatgtcttaatgccctta Alignment from Spaln_nt2Genome AACACCAAGTCTGTGAAAATCCTAATGGACAG aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtgaggtaaggcgcctcatcttccagaacacgaatgtcttaatgccctta Alignment from Pairagon AACACCAAGTCTGTGAAAATCCTAATGGACAG aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtgaggtaaggcgcctcatcttccagaacacgaatgtcttaatgccctta Alignment from Exonerate_protein2genome AACACCAAGTCTGTGAAAATCCTAATGGACAG aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtgaggtaaggcgcctcatcttccagaacacgaatgtcttaatgccctta Alignment from Exonerate_coding2genome AACACCAAGTCTGTGAAAATCCTAATGGACAG aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagAACACCAAGTCTGTGAAAATCCTAATGGACAGgtgaggtaaggcgcctcatcttccagaacacgaatgtcttaatgccctta Alignment from GeneWise --ACCAAGTCTGTGAAAATCCTAA aagacattacctcacctgcaacaggacagcccgctcttatctctccgcagaacaccaagtctgtgaaaatcctaatggacaggtgaggtaaggcgcctcatcttccagAACACGAATGTCTTAATGCCCTT- #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from Exonerate_coding2genome CCGCTGCGCCTGCAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccCCCTACTTCTCCCAGGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttagtgtccccctacttctcccagGCCACTGAAGTCTGTATCAACCCTGTGGAATTTAACCCAGAGTTAGTAGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtcttggccttgttcttcccatcgtatcttaggggtatggtcagattctg #### Trpm3_ID5039_5 --> 2 - 0 Original Alignment gtGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccaggtGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa Alignment from CESAR gtGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccaggtGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa Alignment from Spaln_aa2Genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccagGTGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa Alignment from Spaln_nt2Genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccagGTGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa Alignment from Pairagon GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccagGTGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa Alignment from Exonerate_protein2genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccagGTGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa Alignment from Exonerate_coding2genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccagGTGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa Alignment from GeneWise GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT gcacagactattacacttttccaccaccctcacttggttctgcattccagGTGTAATCCATCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCTCGAGGGAAGATATGCACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGATgtaagtcctgggggatgcttgattgtctgacttctcttagacatacataa #### Trpm3_ID5042_7 --> 2 - 2 Original Alignment gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg cattctgactttatctctttttttcttctatattctttttcatttcctaggaATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTgggtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct Alignment from CESAR gaATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCgg cattctgactttatctctttttttcttctatattctttttcatttcctaggaATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTgggtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct Alignment from Spaln_aa2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttcttctatattctttttcatttcctagGAATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTGGgtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct Alignment from Spaln_nt2Genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATA---CCTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttcttctatattctttttcatttcctagGAATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTGGgtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct Alignment from Pairagon GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttcttctatattctttttcatttcctagGAATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTGGgtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct Alignment from Exonerate_protein2genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttcttctatattctttttcatttcctagGAATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTGGgtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct Alignment from Exonerate_coding2genome GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC---CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttcttctatattctttttcatttcctagGAATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTGGgtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct Alignment from GeneWise GAATCGGTCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATACCTT---CGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCATTTGGGCATAAATATTCAGAAGAAGGCGG cattctgactttatctctttttttcttctatattctttttcatttcctagGAATTGGTCAAGGAGTTCCAGTGGTGGCTCTTCTTGTAGAAGGAGGACCCAATGTTATCACAATTGTTTTGGAATACCTCCTGCGAGACACCCCTCCTGTCCCAGTTGTTGTCTGTGATGGCAGTGGATGGGCCTCTGATATCCTTGCCTTTGGCCATGAATATTCGGAAGAAAGTGGgtaaggtagtgacagcatagttaagcttctgcaaagaggacatctgagct #### Trpm3_ID5048_8 --> 1 - 0 Original Alignment aCTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagaCTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt Alignment from CESAR aCTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagaCTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt Alignment from Spaln_aa2Genome ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagACTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt Alignment from Spaln_nt2Genome ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagACTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt Alignment from Pairagon ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagACTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt Alignment from Exonerate_protein2genome ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagACTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt Alignment from Exonerate_coding2genome ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagACTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt Alignment from GeneWise ACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTG tactaaaacatagaacaaaagttatcttagactgatgtacccacccctagACTTATCAATGAATCTTTGAGGGACCAACTGTTGGTAACAATACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAACTGgtaattcaaaccccatgaagatgaagcatagccaatgctcccaacctggt #### Trpm3_ID5055_11 --> 0 - 0 Original Alignment GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc Alignment from CESAR GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc Alignment from Spaln_aa2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc Alignment from Spaln_nt2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc Alignment from Pairagon GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc Alignment from Exonerate_protein2genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc Alignment from Exonerate_coding2genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc Alignment from GeneWise GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtattttcctagaatgggcagacagatctcttatctttttctgtagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtgggtctggccagtgaaagtgcctttttgttattcattctggttggttc #### Trpm3_ID5058_14 --> 0 - 0 Original Alignment CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt Alignment from CESAR CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt Alignment from Spaln_aa2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt Alignment from Spaln_nt2Genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt Alignment from Pairagon CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt Alignment from Exonerate_protein2genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt Alignment from Exonerate_coding2genome CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt Alignment from GeneWise CCCAAAGCCTTGAAACTGCTGGGAATGGAG taccacagcgaaaacactaataactttgctttctttttcttttctaaaagCCCAAAGCCTTAAAACTTCTGGGAATGGAGgtatgagttttcctaaaattatacaatcaattacagatatgtgtccattt #### Trpm3_ID5080_24 --> 2 - 2 Original Alignment aaCTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAag tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagaaCTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGaggtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc Alignment from CESAR aaCTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAag tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagaaCTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGaggtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc Alignment from Spaln_aa2Genome AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagAACTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGAGgtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc Alignment from Spaln_nt2Genome AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagAACTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGAGgtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc Alignment from Pairagon AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagAACTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGAGgtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc Alignment from Exonerate_protein2genome AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagAACTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGAGgtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc Alignment from Exonerate_coding2genome AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagAACTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGAGgtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc Alignment from GeneWise AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctactttgtcttaaatagacaaatgtgttttcttgcagAACTTTTCATAACTGACGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGATCGCTTCAATTCATCCAATGATGAGAGGATACGTGTCACCTCAGAGAGgtatggcatgtgctgcttgacataggtgatgttaccagttaaacctttcc #### Trpm6_ID4469_7 --> 0 - 1 Original Alignment GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTtgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt Alignment from CESAR GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTt ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTtgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt Alignment from Spaln_aa2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTTgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt Alignment from Spaln_nt2Genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTTgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt Alignment from Pairagon GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTTgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt Alignment from Exonerate_protein2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTTgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt Alignment from Exonerate_coding2genome GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTTgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt Alignment from GeneWise GTGGTGTGTATGTACCAGACACTGGGTAACCCACTCAGCAAGCTCACCACGCTAAACTGTATGCACTCTCACTTCATCCTGTGTGATGATGGGACTGTGGGCATGTATGGAAATGAAGAGAAGCTCAGGCGGAACCTGGAGAAGCATCTCTCAATGCAGAAGATACACACTT ttctaatgaccctgagttctactgcccttccagtgttgtttttcctccagGTAGTATGCATGTACCAGACACTGGGTAACCCACTCAGCAAGCTGACTACACTAAACTGTATGCACTCTCACTTCGTTTTGTGTGATGATGGTACTGTGGGTATGTATGGAAATGAAGAAAAGCTCAGGCGGAACCTGGAGGAACATCTCTCAATGCAGAAGCTACACACTTgtaagtgggttcaccctcctgctataccaacaataaacaactcaattatt #### Trpm6_ID4473_11 --> 2 - 0 Original Alignment gtACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttaggtTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat Alignment from CESAR gtACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttaggtTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat Alignment from Spaln_aa2Genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat Alignment from Spaln_nt2Genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat Alignment from Pairagon GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat Alignment from Exonerate_protein2genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat Alignment from Exonerate_coding2genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat Alignment from GeneWise GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG ttctcgtaccttccattggaacagttatatactatattcttttctcttagGTTCAAGCTTGTCAATATCAGAACAATTAAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACATATCCTAACATATGGACAACATTGGAAAgtcagttaagaatgacatcatcagctgatgagaagtttcttacatatgat #### Trpm6_ID4478_15 --> 0 - 0 Original Alignment AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc Alignment from CESAR AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc Alignment from Spaln_aa2Genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc Alignment from Spaln_nt2Genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc Alignment from Pairagon AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc Alignment from Exonerate_protein2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc Alignment from Exonerate_coding2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc Alignment from GeneWise AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG ccttttttcttttgtctattgccctttaacctgcctccacctcctgccagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCACTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtacaccccatagttgatattgttaacaataaagatggttttacagaatc #### Trpm6_ID4488_25 --> 2 - 2 Original Alignment agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag tctcaactttccaagattggcttaggtttacccagaaccttctccttcagaaCTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACaggtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc Alignment from CESAR agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag tctcaactttccaagattggcttaggtttacccagaaccttctccttcagaaCTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACaggtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc Alignment from Spaln_aa2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagattggcttaggtttacccagaaccttctccttcagAACTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACAGgtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc Alignment from Spaln_nt2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagattggcttaggtttacccagaaccttctccttcagAACTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACAGgtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc Alignment from Pairagon AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagattggcttaggtttacccagaaccttctccttcagAACTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACAGgtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc Alignment from Exonerate_protein2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagattggcttaggtttacccagaaccttctccttcagAACTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACAGgtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc Alignment from Exonerate_coding2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagattggcttaggtttacccagaaccttctccttcagAACTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACAGgtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc Alignment from GeneWise AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG tctcaactttccaagattggcttaggtttacccagaaccttctccttcagAACTATACCTCACACGGGATGACTTACAAAAGCTTCATGATTTTGAGGAGCAATGCGTGGGAGAGTATTTCCACAAGAAGACAGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGACAGgtaagtaactacaccttgatccctaaactgctactggatcagttgcatcc #### Trpm6_ID4492_28 --> 0 - 1 Original Alignment GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAg tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAggtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca Alignment from CESAR GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAg tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAggtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca Alignment from Spaln_aa2Genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAGgtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca Alignment from Spaln_nt2Genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAGgtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca Alignment from Pairagon GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAGgtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca Alignment from Exonerate_protein2genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAGgtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca Alignment from Exonerate_coding2genome GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAGgtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca Alignment from GeneWise GTAATAACAGTCAATGCCTGCTATCAAAGTGACCAGTTGAATGCAGAGCCAGGAGAAACTAACACCACTGAAGAGTTCAGCAAGAAATGGCTCTCTGTATCCAACTTCAGCCAGATAG tagcaacagttcaccatgattgtgtctgattgtgggcttcctatgagcagGTAATAACAGTCAATGCCTGCTATCACAGTGATCAGTTGAATGCAGAACCTGGAGAAACTAATTCCACCGAAGAATTCAGCAAGAAATGGCCCTCTGTATCCAACTTCAGCCAAATAGgtgagcgaacctcttgccttataccctaacacctgatagaatcagcagca #### Trpm6_ID4495_30 --> 0 - 2 Original Alignment AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTct gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTctgtaccaaagatatttggttgtcacactccattttgttgactcaaaatata Alignment from CESAR AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTct gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTctgtaccaaagatatttggttgtcacactccattttgttgactcaaaatata Alignment from Spaln_aa2Genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtaccaaagatatttggttgtcacactccattttgttgactcaaaatata Alignment from Spaln_nt2Genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtaccaaagatatttggttgtcacactccattttgttgactcaaaatata Alignment from Pairagon AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtaccaaagatatttggttgtcacactccattttgttgactcaaaatata Alignment from Exonerate_protein2genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtaccaaagatatttggttgtcacactccattttgttgactcaaaatata Alignment from Exonerate_coding2genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCTAACAAGAAGTCCAAATGAAGTTCACAAGATCTCAACCTCCTTAAAAAGCC gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTGTACCAAAGATATTTGGTTGTCACACTCCATTTTGTTGACTCAAAATATA Alignment from GeneWise AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCTAACAAGAAGTCCAAATGAAGTT------CACAAG gaaaaaatattctcagcacttgggctgccacacagtttctgtgtcctcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTGTACCAAAGATATTTGGTTGTCACACTCCATTTTgttgactcaaaatata #### Trpm6_ID4502_33 --> 2 - 1 Original Alignment ccATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCa gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagccAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTagttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt Alignment from CESAR ccATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCa gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagccAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTagttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt Alignment from Spaln_aa2Genome CCATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCA gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagCCAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTAgttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt Alignment from Spaln_nt2Genome CCATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCA gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagCCAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTAgttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt Alignment from Pairagon CCATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCA gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagCCAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTAgttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt Alignment from Exonerate_protein2genome CCATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCA gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagCCAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTAgttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt Alignment from Exonerate_coding2genome CCATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCA gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagCCAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTAgttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt Alignment from GeneWise CCATTGAAAGGAATAATTTAATGAGACTGTCTCAGACCATACCGTTTACACCAATCCAGCTGTTCA gtttgttgagggttgtttatacggcaagtccctaccttatctccttccagCCAATGAAAGGAACAATTTAATGAGGCTGTCTCAAACAATACCTTTTACACCGATTAAGCTGTTTAgttaaggacatctgacatatattaaggctaggcaagggtagtcttaatgt #### Trpm6_ID4510_37 --> 2 - 2 Original Alignment gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacaggtGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAAcagtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa Alignment from CESAR gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacaggtGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAAcagtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa Alignment from Spaln_aa2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa Alignment from Spaln_nt2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa Alignment from Pairagon GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa Alignment from Exonerate_protein2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa Alignment from Exonerate_coding2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa Alignment from GeneWise GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA gaggatgaacacttccttgtaaaacatatacaaactttaaccttttacagGTGTTGGAGAAAATTTGACAGATCCATCAGTTATAAAGCCAGAAGACAAACAgtaagttagtttaggtcctattgcacctgctagaagggtttgcaacataa #### Trpt1_ID1979_2 --> 0 - 1 Original Alignment GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCggtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from CESAR GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTg aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCggtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Spaln_aa2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Spaln_nt2Genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Pairagon GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Exonerate_protein2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from Exonerate_coding2genome GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc Alignment from GeneWise GACCGAAATGTGCAGCTGTCTAAGGCTCTGTCCTATGCCCTTCGCCACGGGGCCTTGAAGCTGGGACTTCCCATGCGAGCTG aacattcattgctgactactaatttttactagttgctctgttacttgcagGACCGAAACGTGCAGCTGTCTAAGGCTCTGGCCTATGCCCTTCGGCATGGAGGTTTGGAGCTGGGACTTCCCATGCAAGCCGgtgggtaaacatgttggaactgagagtccaactggagcctccatctcttc #### Trpt1_ID1980_3 --> 2 - 0 Original Alignment atGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagatGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from CESAR atGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagatGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Spaln_aa2Genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Spaln_nt2Genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Pairagon ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Exonerate_protein2genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Exonerate_coding2genome ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from GeneWise ATGGCTTTGTGCCCCTGCAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTggtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTggtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTG---GAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCC---AGACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCC---AGACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gaatgcatgaagggagcttctctgctgcaaattgcttttcatttccacagGTCCCTGAGTTGGAATTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGACGAATCACTGGCCATCCATTTTACTAAAGGGGTTGTCACGCCAAGGAAGGACATGCATTCACCTGGCTTCAGGATTGCCA---GACCCTGGTGTTATCAGTGgtaagggctcattacctcatctctcttccctggactccaccagggatcac #### Trub1_ID12384_4 --> 0 - 1 Original Alignment AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATggtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc Alignment from CESAR AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATggtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc Alignment from Spaln_aa2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATGgtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc Alignment from Spaln_nt2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATGgtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc Alignment from Pairagon AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATGgtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc Alignment from Exonerate_protein2genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATGgtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc Alignment from Exonerate_coding2genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATGgtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc Alignment from GeneWise AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG aactcatgaaaaaatgctcatcatcacatcacaccgccctctctatatagAGATATATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACTGGGAAGGTAACAGAAGAGAAACCATATGgtaggcggccttagtgtagaagaatctgttgcccagcccagcatcttttc #### Trub1_ID12385_5 --> 2 - 2 Original Alignment atAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGct gttattgcttctgcagtcattgccattgccaacctacctttctcccccagatAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCActgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac Alignment from CESAR atAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGct gttattgcttctgcagtcattgccattgccaacctacctttctcccccagatAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCActgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac Alignment from Spaln_aa2Genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gttattgcttctgcagtcattgccattgccaacctacctttctcccccagATAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCACTgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac Alignment from Spaln_nt2Genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gttattgcttctgcagtcattgccattgccaacctacctttctcccccagATAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCACTgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac Alignment from Pairagon ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gttattgcttctgcagtcattgccattgccaacctacctttctcccccagATAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCACTgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac Alignment from Exonerate_protein2genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gttattgcttctgcagtcattgccattgccaacctacctttctcccccagATAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCACTgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac Alignment from Exonerate_coding2genome ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gttattgcttctgcagtcattgccattgccaacctacctttctcccccagATAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCACTgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac Alignment from GeneWise ATAAAATAACACGAGAAGATATCGAAGGCATTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCCCCGCT gttattgcttctgcagtcattgccattgccaacctacctttctcccccagATAGGATAACGCGAGAAGATATTGAAGGGACTCTGCAGAAGTTTACTGGGAATATAATGCAAGTACCTCCACTgtttgtagagttgcttcacgtgtgttttgttgccacatctcttagccaac #### Trub1_ID12387_7 --> 2 - 1 Original Alignment atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagatGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAggtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc Alignment from CESAR atGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAg tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagatGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAggtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc Alignment from Spaln_aa2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagATGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc Alignment from Spaln_nt2Genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagATGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc Alignment from Pairagon ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagATGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc Alignment from Exonerate_protein2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagATGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc Alignment from Exonerate_coding2genome ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagATGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc Alignment from GeneWise ATGTTGAATGCGGAGGAGGCTTTTACATCCGGAGCCTGGTCAGTGACATCGGCAAAG tagaactctctggaggtgaacctctgactgcatctgttggtcttttatagATGTTGAATGTGGAGGCGGCTTTTACACCCGGAGCTTGGTCAGTGACATCGGAAAAGgtgagtaagagagtggattatcaaccgtctttgagatcatcatgctcctc #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttcTAGACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Exonerate_protein2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from Exonerate_coding2genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctagACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aaccccagcccttgggaagagtaggaattttgtctcattttaccttctag---ACTAATGCCCGACTAACAGGAAATCGGCGCTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGAAGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagtgggacaaggtgatctggtcttcccatgtcatacctgtgtattgt #### Tut1_ID2553_6 --> 1 - 1 Original Alignment gTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAg agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagaTTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTggtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa Alignment from CESAR gTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAg agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagaTTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTggtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa Alignment from Spaln_aa2Genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagATTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa Alignment from Spaln_nt2Genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagATTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa Alignment from Pairagon GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagATTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa Alignment from Exonerate_protein2genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagATTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa Alignment from Exonerate_coding2genome GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagATTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa Alignment from GeneWise GTTGGCCTTATATAATTCACGTTTCCTGAATCTCTGCTCTGAGATGGATGGTCGAGTCCGGCCCCTTGTGTATACCTTACGCTGCTGGGCTCAGCATAATGGGCTGTCAG agcttgtagaaattctctaacaaccttgcctgttttgattatttggtcagATTAGCATTATATAATTCTCGTTTCCTGAATCTATGCACTGAGATGGATGGTCGAGTGCAGCCCCTTGTGTACACCTTACGTTGTTGGGCTAAACATAATGGTCTGTCTGgtaagtgcagggacagacctggtccatgtatatgtcaaggaaggtgggaa #### Ubxn1_ID2443_7 --> 0 - 0 Original Alignment TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca Alignment from CESAR TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca Alignment from Spaln_aa2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca Alignment from Spaln_nt2Genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca Alignment from Pairagon TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca Alignment from Exonerate_protein2genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca Alignment from Exonerate_coding2genome TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca Alignment from GeneWise TATGGTGGTAGTGTGGGTTCTCGGTCATCCCCACCAGCAACAGACCCAGGTCCTGTTCCTTCTTCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAG ttctatacttgctaaatgagtagggtcttctctttctctggctctttcagTGCGGTGGTAGTGTGGGTTCTCGGACATCCCCACCAGCAACTGACCCAGGTCCTGTACCTTCTCCTCCCAGCCAGGAGCCCCCTACTAAGCGGGAGTATGACCAGTGTCGTATACAAgtatcatatccaagtgatcatcttcctactgtacttccatgtaaccttca #### Ubxn1_ID2444_8 --> 0 - 1 Original Alignment GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGggtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg Alignment from CESAR GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGggtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg Alignment from Spaln_aa2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGGgtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg Alignment from Spaln_nt2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGGgtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg Alignment from Pairagon GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGGgtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg Alignment from Exonerate_protein2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGGgtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg Alignment from Exonerate_coding2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGGgtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg Alignment from GeneWise GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG aaggcttatcctacaaatgctcattgatcctcttccctatgcatacctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGACCCGGGAACAGCTGGCAGCTGTTAGGCTTTATGTGGAGCTTCATCATGGAGAGGAGCCTGGGCAGGATCAGGACCCAGTACAGTTGCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCCTGCAGAAACTGGgtaagatatgtacagcccttattcatttatgtgcatactcctggcgcagg #### Uhrf2_ID6379_10 --> 0 - 2 Original Alignment GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACag tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACaggtaatttgctaagcatggagccccacacatggagcctagatttaaaacta Alignment from CESAR GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACag tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACaggtaatttgctaagcatggagccccacacatggagcctagatttaaaacta Alignment from Spaln_aa2Genome GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACAG tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACAGgtaatttgctaagcatggagccccacacatggagcctagatttaaaacta Alignment from Spaln_nt2Genome GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACAG tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACAGgtaatttgctaagcatggagccccacacatggagcctagatttaaaacta Alignment from Pairagon GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACAG tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACAGgtaatttgctaagcatggagccccacacatggagcctagatttaaaacta Alignment from Exonerate_protein2genome GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACAG tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACAGgtaatttgctaagcatggagccccacacatggagcctagatttaaaacta Alignment from Exonerate_coding2genome GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACAG tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACAGgtaatttgctaagcatggagccccacacatggagcctagatttaaaacta Alignment from GeneWise GACCGAGGTGATGAGTTCACGTATACTGGAAGCGGTGGTAAAAATCTTGCTGGTAATAAAAGAATTGGAGCTCCATCGGCTGACCAGACACTAACAAACATGAACAG tagttgtagggttacagttgaaattacaattttgattctcctctaattagGACCGAGGTGATGAATTAACATATACTGGGAGTGGGGGCAAGAATCTTGCTGGTAATAAAAGAATTGGAACTCCTGCAGCTGACCAGACACTAACAAACATGAACAGgtaatttgctaagcatggagccccacacatggagcctagatttaaaacta #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tctttgagttttgatggggagccaccaattttcttttttctttaaaccagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCGAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACTTATGGCATCTTCCTTggtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tctttgagttttgatggggagccaccaattttcttttttctttaaaccagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCGAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACTTATGGCATCTTCCTTggtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_aa2Genome tctttgagttttgatggggagccaccaattttcttttttctttaaaccagctagaagaacttgtgggtgcataccccaactacaatgaggaggaggaagagcgccactactactgccgtaagcgtcttggggtagtcgaaaatgcattggcagccagcacaggtgtcactctgacttatggcatcttccttggtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_nt2Genome tctttgagttttgatggggagccaccaattttcttttttctttaaaccagctagaagaacttgtgggtgcataccccaactacaatgaggaggaggaagagcgccactactactgccgtaagcgtcttggggtagtcgaaaatgcattggcagccagcacaggtgtcactctgacttatggcatcttccttggtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa Alignment from Pairagon tctttgagttttgatggggagccaccaattttcttttttctttaaaccagctagaagaacttgtgggtgcataccccaactacaatgaggaggaggaagagcgccactactactgccgtaagcgtcttggggtagtcgaaaatgcattggcagccagcacaggtgtcactctgacttatggcatcttccttggtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaattttcttttttctttaaaccagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCGAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACTTATGGCATCTTCCTTGgtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaattttcttttttctttaaaccagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCGAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACTTATGGCATCTTCCTTGgtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaattttcttttttctttaaaccagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCGAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACTTATGGCATCTTCCTTGgtgagtatgacatattaactctgcttgccctcttcctctacaacttcaaa #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtaggATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaagaagtgtggtagcaggcaggcttccctacccatttggcttgtagGATGTCCCAGAAGTACTATGAATATTCACATTACAAGGAGCAAGATGACCAAGGACCTCAACAACGCCCACCACGAGGACCCCACACACCTTTTCTCCTGGTTTTCCAGGCCAACTTTTATAGCTTCTCGCACgtcagggtgctacaggaagccttgtgggggatgggaggcgggtatagcct #### Vax1_ID12908_2 --> 2 - 0 Original Alignment atGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagatGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac Alignment from CESAR atGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagatGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac Alignment from Spaln_aa2Genome ATGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagATGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac Alignment from Spaln_nt2Genome ATGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagATGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac Alignment from Pairagon ATGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagATGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac Alignment from Exonerate_protein2genome ATGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagATGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac Alignment from Exonerate_coding2genome ATGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagATGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac Alignment from GeneWise ATGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAGGCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGATGGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCTGAGACCCAG ggaagaataccaggggtgggagtctatgtgacatggtgttctctctccagATGCCAAGGGATCTATCCGAGAAATCATCTTGCCCAAAAGCTTGGACCTCGACCGGACTAAGAAGACTCGCACATCCTTCACTGCAGAGCAGCTCTACAGGCTGGAGATGGAATTCCAACGTTGCCAGTATGTGGTGGGCCGGGAAAGAACCGAATTGGCTCGGCAGTTGAATCTCTCTGAGACTCAGgtatgtagcagcaaagtgcccacaacaccaggcttccataattcctctac #### Vldlr_ID5804_4 --> 2 - 1 Original Alignment atATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTg gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagatATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTggtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga Alignment from CESAR atATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTg gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagatATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTggtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga Alignment from Spaln_aa2Genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagATATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTGgtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga Alignment from Spaln_nt2Genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagATATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGAC---CGAGAAGAAGAGCAAAATTGTGgtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga Alignment from Pairagon ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagATATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGACC---GAGAAGAAGAGCAAAATTGTGgtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga Alignment from Exonerate_protein2genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagATATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGACCGA---GAAGAAGAGCAAAATTGTGgtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga Alignment from Exonerate_coding2genome ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagATATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGACCGA---GAAGAAGAGCAAAATTGTGgtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga Alignment from GeneWise ATATGAGAACATGCCGCATAAATGAAATCAGCTGTGGCGCCCGTTCTACTCAGTGTATCCCCGTGTCCTGGAGATGCGATGGTGAAAATGATTGTGACAATGGAGAAGATGAAGAAAACTGTG gtgctgcatatccaggtgtctaggtatattcctgtgcttgtgatttgcagATATGAGAACATGCCGTATAAATGAAATTAGCTGTGGTGCTCGTTCCACTCAGTGTATTCCTATCTCCTGGAGATGTGATGGCGAGAATGATTGTGACCGA---GAAGAAGAGCAAAATTGTGgtaagtatacccatgtgtgctgatataacgcatggtgagataacccatga #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagatATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagatATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaactgagtctgctgtctctgtttttttagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtgggtaggtaacctagcgatgctattaagctctgagtgtaggctgcaaa #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag caacagaatttgcctacaagcaaaaacaacatttttttctactttgacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag caacagaatttgcctacaagcaaaaacaacatttttttctactttgacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTaggtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Spaln_aa2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Spaln_nt2Genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG caacagaatttgcctacaagcaaaaacaacatttttttctactttgacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGAGACATCAGAAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAATTGAGGAACACAGTAGCTCTTGATGCAGACATTGCAGCTCAGAAGCTTTTTTGGGCTGATCTCAGCCAGAAGGCTATCTTTAGgtgagctccatctgcctccctaatgtctgggaagcatgttaaacagtttg #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagacCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagacCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG caagtgtgaggagaaagtagctaaaaacttattctttcttttttta gACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Exonerate_protein2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from Exonerate_coding2genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagctaaaaacttattctttctttttttagACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag Alignment from GeneWise -----------------------CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagtgtgaggagaaagtagCTAAAAACTTATTCTTTCTTTTTTTAGACCTGGTGAAAAGCCGTCTCTATTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATTGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTGCCCTCACTATATTTGAGgtgagtcttatgctatatgtgcatgtatgaaccagttctagggaagagag #### Vldlr_ID5816_15 --> 2 - 1 Original Alignment gtAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAa ccagcacagttatggtggaggtacttctgatgcttctggatctatttcaggtAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAagtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag Alignment from CESAR gtAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAa ccagcacagttatggtggaggtacttctgatgcttctggatctatttcaggtAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAagtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag Alignment from Spaln_aa2Genome GTAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAA ccagcacagttatggtggaggtacttctgatgcttctggatctatttcagGTAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAAgtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag Alignment from Spaln_nt2Genome GTAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAA ccagcacagttatggtggaggtacttctgatgcttctggatctatttcagGTAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAAgtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag Alignment from Pairagon GTAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAA ccagcacagttatggtggaggtacttctgatgcttctggatctatttcagGTAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAAgtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag Alignment from Exonerate_protein2genome GTAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAA ccagcacagttatggtggaggtacttctgatgcttctggatctatttcagGTAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAAgtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag Alignment from Exonerate_coding2genome GTAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAA ccagcacagttatggtggaggtacttctgatgcttctggatctatttcagGTAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAAgtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag Alignment from GeneWise GTAAAAACTGGTGTGAAGACGATATGGAGAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTCGAAGAAAATGGACGAGAGTGTCAAA ccagcacagttatggtggaggtacttctgatgcttctggatctatttcagGTAAAAACTGGTGTGAAGACGATATGGAAAATGGAGGATGTGAATATCTCTGCCTGCCAGCACCACAGATCAATGACCACTCTCCAAAATATACCTGTTCCTGTCCCAATGGGTACAATCTTGAAGAGAATGGGCGAGAATGTCAAAgtgagtctttcagtgtcccagacatgcttctaatattggttttaaaatag #### Vps13a_ID4053_70 --> 1 - 0 Original Alignment tGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagtGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTTT---GAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga Alignment from CESAR tGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagtGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTTT---GAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga Alignment from Spaln_aa2Genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagTGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTTT---GAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga Alignment from Spaln_nt2Genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagTGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTT---TGAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga Alignment from Pairagon TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagTGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTT---TGAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga Alignment from Exonerate_protein2genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagTGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTTT---GAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga Alignment from Exonerate_coding2genome TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagTGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTTT---GAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga Alignment from GeneWise TGGCGTGTTGTTCGTAACAAAGGGAACATTTGGACAGCTTACATGTGAGTGGCAGTACACTTTTGATGAATTCACCAAAGAGCCGTTCATTGTCCATGGGAGAAGACTGCGCATTGAAGCCAAG gacttagttataccaatttccaaagtcactgacctcatctcgatccccagTGGTGTGCTGTTTGTAACAAAGGGAGCATTTGGACAACTTACATGTGAGTGGCAATATACTTTT---GAATTTACCAAAGAGCCATTCATTGTCCGTGGGAGAAGACTGCGCATTGAAGCTAAAgtatttatagcagattctatatttcaattttcacagaaacgcagtgtaga #### Vps13a_ID4054_69 --> 0 - 2 Original Alignment GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGAcg ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGcggtaagccatttctcttcttatctgctatagttggtatgacaaacagatac Alignment from CESAR GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGAcg ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGcggtaagccatttctcttcttatctgctatagttggtatgacaaacagatac Alignment from Spaln_aa2Genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGCGgtaagccatttctcttcttatctgctatagttggtatgacaaacagatac Alignment from Spaln_nt2Genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGCGgtaagccatttctcttcttatctgctatagttggtatgacaaacagatac Alignment from Pairagon GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGCGgtaagccatttctcttcttatctgctatagttggtatgacaaacagatac Alignment from Exonerate_protein2genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGCGgtaagccatttctcttcttatctgctatagttggtatgacaaacagatac Alignment from Exonerate_coding2genome GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGCGgtaagccatttctcttcttatctgctatagttggtatgacaaacagatac Alignment from GeneWise GTCATGGAAAATGGAAGATTTGCAAAATACAAGTATTTTACCCATGTCATGATCAATAAAACAGATATGTTCATGATAACAAGACG ttcctgcaaaacagaatacaaaataatactctgcaaaattctttccacagGTCATGGAAAACGGGAGATTTGCGAAATACAAGTATTTGACCCATGTTATGATCAATAAAATAGATATGTTTATGGTCACAAGGCGgtaagccatttctcttcttatctgctatagttggtatgacaaacagatac #### Vps13a_ID4064_59 --> 1 - 0 Original Alignment gTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcaggTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat Alignment from CESAR gTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcaggTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat Alignment from Spaln_aa2Genome GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcagGTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat Alignment from Spaln_nt2Genome GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcagGTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat Alignment from Pairagon GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcagGTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat Alignment from Exonerate_protein2genome GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcagGTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat Alignment from Exonerate_coding2genome GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcagGTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat Alignment from GeneWise GTATTTCAAAGTGTTGATTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCCTAGCAGACCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAG aagtcccataaattctctcgttatgatgcttccatctctgccctctgcagGTATTTCAAGGTGTTAGTTCAAGAAATGGACCTCAGTTTGGATCTTGGATTTGTGTATGCCATAGAGGATCTTGTCACAAAAGCTGAAGTGACTGAGAAGACAGAGgtctgttgtagaatggtggcatttgtcagaaagaaaagggtctagaaaat #### Vps13a_ID4081_42 --> 0 - 0 Original Alignment GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca Alignment from CESAR GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca Alignment from Spaln_aa2Genome GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca Alignment from Spaln_nt2Genome GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca Alignment from Pairagon GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca Alignment from Exonerate_protein2genome GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca Alignment from Exonerate_coding2genome GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca Alignment from GeneWise GTTCACTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCCTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAG ctgtaggagaagataaatttacttaaaaacccaagttctccctctctcagGTCCATTATTATAATGAAATGTTTGGTGTTTGGGAACCTTTACTGGAACCTTTAGAAATTGATCAGACTGATGATTTTAGACCCTGGAATCTGGGCATCAAGgtgagatagtggttattgtcatgaatatatgtctgaatgaaggccagcca #### Vps13a_ID4087_36 --> 2 - 0 Original Alignment ctACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagctACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa Alignment from CESAR ctACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagctACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa Alignment from Spaln_aa2Genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagCTACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa Alignment from Spaln_nt2Genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagCTACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa Alignment from Pairagon CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagCTACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa Alignment from Exonerate_protein2genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagCTACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa Alignment from Exonerate_coding2genome CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagCTACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa Alignment from GeneWise CTACTGTGGTGACCGCTGCTGTGGTGGAGGTGCACCCACAGGCTTCTCAAGCGCACACGATGCTGAACGTGAGCTTCCAGACCGATTACCTCACCATGGCACTCTACAGTCCGGGGCCGGATGAG ctggtcaccattgtagggctgggtttactgcccgccctccaatgtcccagCTACTGTAGTGACTGCAGCAGTAGTGGAGGTGCACCCACAGGCTTCTCAAGCACACACAATGCTTAATGTGAGCTTCCACACTGATTATCTCACCATGGCACTCTACAGTCCGGGACCAGATGAGgtgagtgtagcctgaaatcatctctgcatatattaagagattagcccaaa #### Vps13a_ID4091_32 --> 0 - 0 Original Alignment GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga Alignment from CESAR GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga Alignment from Spaln_aa2Genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga Alignment from Spaln_nt2Genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga Alignment from Pairagon GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga Alignment from Exonerate_protein2genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga Alignment from Exonerate_coding2genome GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga Alignment from GeneWise GCTCTTTATATCACTGGAAAAGAAGTTTTCAGCTTCAAAATGATTTCTTACATGGATGCAACTGCTGGCTATGCATACACAGATATGAGTGTGGTTGACATTCGGGTTCATTTAACTGTTGGTTGCATTGAAGTAGTGTTCATCACAAAATTCCTGTATTCTATATTG cagattattgtctctgtcaccaacctcattcagtcgctttctactcttagGCTCTTTACATCACTGGAAAAGAAGTTTTCAGCTTTAAAATGATTTCTTACATGGAAGCAACCGCTGGCTATGCATACACAGACATGAGTGTTGTTGATATTCGGGTTCATCTAGCAGTTGGGTGCATTGAAGTAGTGTTCATCACAAGGCTTCTGTATTCTATATTAgtgaaattcatgaaaaaagcttttctagaaagatatagctatgtttctga #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagctTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAggtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagctTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAggtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgctcccttccctttcctgtccacagCTTTAAAGCTACCCACAAATGAAGATATTATTACATTGCAGCTTTTGGCAGAACTATCGTGTCTACAAATTCTCATCCAGGATCAGAAACAGAACGTATCTGAAATTAAAATTGAAGgtgagcacatctattacctgtatttagaattgactaagttcaaaaggcag #### Vps13a_ID4097_26 --> 0 - 1 Original Alignment GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAg tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGggtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc Alignment from CESAR GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAg tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGggtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc Alignment from Spaln_aa2Genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGGgtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc Alignment from Spaln_nt2Genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGGgtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc Alignment from Pairagon GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGGgtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc Alignment from Exonerate_protein2genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGGgtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc Alignment from Exonerate_coding2genome GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGGgtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc Alignment from GeneWise GTGTCCATTCAGTTTTATCACCTGGTGGGAGACTGTGAACTACCTGTGCTGGAAATGGGTGCTTTAGGATTGGGAACAGAAGCTGAGTTTAGAACATTTGACTTGAAAGGAAGTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAATATTTAG tatagattctcatctgatctaggatcacttggattattttatttttctagGTGTCCATACGATTTTAT---CTTGTGGGAGACTGTGAACTACCTGTACTGGGAATGGGGGCTTTAGGACTGGGGACAGAAGCCGAGTTTAGAACATTTGAGTTGGAAGGAACTGCCTTTTTGAAAGAATTATGGCTAAAATGTCCAGAGTATTTGGgtatctccgttaagcaggccttgcatacacattcaggagtcttatcattc #### Vps13a_ID4099_24 --> 0 - 1 Original Alignment ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg ttgtataggtggtcagccttctagttgttctctctcccttcctttagaagATT---GCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACggtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata Alignment from CESAR ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg ttgtataggtggtcagccttctagttgttctctctcccttcctttagaagATT---GCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACggtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata Alignment from Spaln_aa2Genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgtataggtggtcagccttctagttgttctctctcccttcctttagAAGATTGCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACGgtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata Alignment from Spaln_nt2Genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgtataggtggtcagccttctagttgttctctctcccttcctttagAAGATTGCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACGgtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata Alignment from Pairagon ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgtataggtggtcagccttctagttgttctctctcccttcctttagaagATT---GCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACGgtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata Alignment from Exonerate_protein2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgtataggtggtcagccttctagttgttctctctcccttcctttagAAGATTGCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACGgtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata Alignment from Exonerate_coding2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgtataggtggtcagccttctagttgttctctctcccttcctttagAAGATTGCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACGgtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata Alignment from GeneWise ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG ttgtataggtggtcagccttctagttgttctctctcccttcctttagAAGATTGCATCTACTTTACCAGTGTCACATGTTTCTCAAGAATTAATACCTTCACTGGAACAGCCTGTTATGGAAGACGgtgagtataaacttgttaacaggactttcttttcgtaggtctatcctata #### Vps13a_ID4100_23 --> 1 - 0 Original Alignment aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagaTACAAAATTTCTGGG------CCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt Alignment from CESAR aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagaTACAAAATTTCTGGG------CCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt Alignment from Spaln_aa2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagATACAAAATTTCTGGG------CCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt Alignment from Spaln_nt2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagATACAAAATTTCTGG------GCCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt Alignment from Pairagon ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagATACAAAATTTCTGG------GCCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt Alignment from Exonerate_protein2genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagATACAAAATTTCTGGG------CCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt Alignment from Exonerate_coding2genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagATACAAAATTTCTGGG------CCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt Alignment from GeneWise ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG taacttagaatgaaaattaatctactgtttctattcctctttgtccacagATACAAAATTTCTGGG------CCACTTGTCTCATTGCAAATTTCAGATATAAAACTACAAGGCAATATGGAGTTGTTTGGCAGCATTCCTAAGCCAGAGCCTGTTACTGATGTATCTGCCCCTGCCAGATCATACCAAgtgagtccaacttttagaattaatgagacacaacattgaatagttggttt #### Vps13a_ID4101_22 --> 2 - 2 Original Alignment gtGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCaa tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccaggtGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTaagtaaatatacactgtctcctttatagattggccaattttgatttcttcat Alignment from CESAR gtGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCaa tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccaggtGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTaagtaaatatacactgtctcctttatagattggccaattttgatttcttcat Alignment from Spaln_aa2Genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTAAgtaaatatacactgtctcctttatagattggccaattttgatttcttcat Alignment from Spaln_nt2Genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTAAgtaaatatacactgtctcctttatagattggccaattttgatttcttcat Alignment from Pairagon GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTAAgtaaatatacactgtctcctttatagattggccaattttgatttcttcat Alignment from Exonerate_protein2genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTAAgtaaatatacactgtctcctttatagattggccaattttgatttcttcat Alignment from Exonerate_coding2genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTAAgtaaatatacactgtctcctttatagattggccaattttgatttcttcat Alignment from GeneWise GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagtgtgtgaatgatcaatagctgagctatggctgtccccagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCCATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTCATGGACATCAAGATGCCTAAgtaaatatacactgtctcctttatagattggccaattttgatttcttcat #### Vps13a_ID4102_21 --> 0 - 1 Original Alignment GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGg gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGggtgagcatcacacatatgctgatggctggctctcaccaggaaataattag Alignment from CESAR GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGg gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGggtgagcatcacacatatgctgatggctggctctcaccaggaaataattag Alignment from Spaln_aa2Genome GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGG gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGGgtgagcatcacacatatgctgatggctggctctcaccaggaaataattag Alignment from Spaln_nt2Genome GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGG gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGGgtgagcatcacacatatgctgatggctggctctcaccaggaaataattag Alignment from Pairagon GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGG gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGGgtgagcatcacacatatgctgatggctggctctcaccaggaaataattag Alignment from Exonerate_protein2genome GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGG gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGGgtgagcatcacacatatgctgatggctggctctcaccaggaaataattag Alignment from Exonerate_coding2genome GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGG gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGGgtgagcatcacacatatgctgatggctggctctcaccaggaaataattag Alignment from GeneWise GTGTCAAGTAAGCGTCGATCACTGCTGCCAGATGTGAGACCCAGTGAGGCCAGCCTTGAAGATATAATGCACAGAGCGTATGACTCCTTTGATATTCAGCTTACGAGCATACAGTTGCTCTACAGTAGAGTGG gattaagcatacagcgtaagtgtgagaactgtcattttcggccgtcgcagGTGTCAAGTAAACGGCAATCACTGCTTCCAGATGTGAGACCCAGTGAAGCTAGTCTTGAAGACATAATGCACAGAGCATATGATTCATTTGATATTCAGCTTATGAGTATACAATTGCTCTACAGTAGGGTGGgtgagcatcacacatatgctgatggctggctctcaccaggaaataattag #### Vps13a_ID4105_18 --> 1 - 0 Original Alignment aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttaggTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt Alignment from CESAR aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttaggTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt Alignment from Spaln_aa2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttagGTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt Alignment from Spaln_nt2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCA---GATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttagGTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt Alignment from Pairagon ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTT---ACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttagGTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt Alignment from Exonerate_protein2genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttagGTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt Alignment from Exonerate_coding2genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttagGTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt Alignment from GeneWise ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCA---GATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agttttcgttccatgtatattaaccccttttaacttttacactgttttagGTTTGAAACGAAAATTGATTCATTTGATATCACTGGCTTACCACCAGATGACTCCCAAAAACCCCACCTACTGTCTTCATTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCCTTGAACGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATCTGATGCTgtaagaaattgtatattcccaacaatacgtgtactattaagttccagtgt #### Vps13a_ID4114_9 --> 0 - 0 Original Alignment CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact Alignment from CESAR CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact Alignment from Spaln_aa2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact Alignment from Spaln_nt2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact Alignment from Pairagon CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact Alignment from Exonerate_protein2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact Alignment from Exonerate_coding2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact Alignment from GeneWise CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaacaaagtcttaccttttcttatgatagCTAACCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGAATGATTATGATGAGTCATTGgtttgtacttatttacatgtttttgcttttatattgtacgatacttaact #### Vps13a_ID4118_5 --> 2 - 1 Original Alignment gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtaggaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAggtgagagattagtaggcaaatagttattcaactagtcactgttttctcta Alignment from CESAR gaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAg gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtaggaATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAggtgagagattagtaggcaaatagttattcaactagtcactgttttctcta Alignment from Spaln_aa2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAGgtgagagattagtaggcaaatagttattcaactagtcactgttttctcta Alignment from Spaln_nt2Genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAGgtgagagattagtaggcaaatagttattcaactagtcactgttttctcta Alignment from Pairagon GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAGgtgagagattagtaggcaaatagttattcaactagtcactgttttctcta Alignment from Exonerate_protein2genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAGgtgagagattagtaggcaaatagttattcaactagtcactgttttctcta Alignment from Exonerate_coding2genome GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAGgtgagagattagtaggcaaatagttattcaactagtcactgttttctcta Alignment from GeneWise GAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAAGTATTTGATAAAG gctaatttctgagtttaggtagacccaaaccttcttctcatattttgtagGAATACAGTATGATCCTATCAAAGAAGAAAAGCAACTCATGGAAACAAAGCAACAGGAACTAAAAAGAATAGAAAAAGCAAAACAGAAGGTATTCGATAAAGgtgagagattagtaggcaaatagttattcaactagtcactgttttctcta #### Vti1a_ID11633_2 --> 2 - 0 Original Alignment atGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagatGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct Alignment from CESAR atGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagatGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct Alignment from Spaln_aa2Genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct Alignment from Spaln_nt2Genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct Alignment from Pairagon ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct Alignment from Exonerate_protein2genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct Alignment from Exonerate_coding2genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct Alignment from GeneWise --GAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cctttaatggtgagtaattgtcatttttttttttccttcttatttgacagATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTTgtaagtattattgtcgctgaggtgagcataatccattagactaacttcct #### Vti1a_ID11656_4 --> 0 - 0 Original Alignment AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca Alignment from CESAR AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca Alignment from Spaln_aa2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca Alignment from Spaln_nt2Genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca Alignment from Pairagon AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca Alignment from Exonerate_protein2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca Alignment from Exonerate_coding2genome AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca Alignment from GeneWise AAAAGGTCACGGATCGCCTACAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCCGAGAACCAG tgattgtcttggttattctatttggttaacccatccttggctctccccagAAAAGGTCACGGATTGCCTATAGTGACGAAGTACGGAATGAGCTCCTAGGGGATGCTGGGAATTCCTCTGAGAACCAGgtaagttctaagggagcaaggtaattgggtgcctgcaggacggtacaaca #### Vti1a_ID11709_7 --> 0 - 2 Original Alignment CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGAcggtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg Alignment from CESAR CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAag ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGAcggtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg Alignment from Spaln_aa2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGACGgtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg Alignment from Spaln_nt2Genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGACGgtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg Alignment from Pairagon CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGACGgtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg Alignment from Exonerate_protein2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGACGgtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg Alignment from Exonerate_coding2genome CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAGA ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGACGGtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg Alignment from GeneWise CTCCGGGACGCAGATGCAAACCTGGGGAAGAGCTCTCGGATTCTGACGGGGATGCTGCGAAG ggatcatctgagcgcatttaaatcacatatgctcttttcattttttgcagCTCCGGGATGCCGATGCAAACCTGGGGAAGAGCTCTCGGATTCTCACAGGGATGCTACGACGgtaggtgatacatgggatcacaccaacttgcacacccccaagatccatgg #### Vwa2_ID12235_8 --> 1 - 1 Original Alignment cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagcTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAagtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg Alignment from CESAR cTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAg caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagcTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAagtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg Alignment from Spaln_aa2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagCTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg Alignment from Spaln_nt2Genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagCTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg Alignment from Pairagon CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagCTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg Alignment from Exonerate_protein2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagCTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg Alignment from Exonerate_coding2genome CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagCTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg Alignment from GeneWise CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG caacttaggctgcaaatgggactccttcgttctctgctgtgttcatctagCTGGAAAAGAGTATTCCAGACACACCCTGCCAACTGCTATAGAACCATCTGTCCAAgtaagtgttgctgtcctggctatcaaactcctttagtccagggcaggtgg #### Vwa2_ID12238_11 --> 2 - 1 Original Alignment gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCATC---GAGTGGCTATGTAGAg acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctaggcTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGCCGC---------CCTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAggtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa Alignment from CESAR gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAg acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctaggcTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAggtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa Alignment from Spaln_aa2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctagGCTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAGgtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa Alignment from Spaln_nt2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctagGCTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGCCGCC---------CTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAGgtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa Alignment from Pairagon GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctagGCTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGCCGCC---------CTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAGgtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa Alignment from Exonerate_protein2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctagGCTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAGgtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa Alignment from Exonerate_coding2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctagGCTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAGgtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa Alignment from GeneWise GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCGTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG acagtctacaatcagtgagatcaaggtagtctgtttcttttgtgccctagGCTGCCAGGCACAGTCATTGGAACTGATATTCCTACTGGATGCCTCAGCTTCTGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACCCTCCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTTGGGCAAGACACCCATCCCACGCGGGCTGCTGTATTGAGGACTATGAGCCAGGCTCCCTATCTAGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGTGCACACCCAGGTGTCCCCAAGGCCGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCTTGTCCATGTGACTCCCTGATCTATGTGGCAGGCTACACAGACCTTCCTTACCATCAGGACATGCTCACTGTAGAATGGCTATGCAGAGgtaagttaggacaagatcacattcataatgagcttctcatatcagttaaa #### Vwce_ID2947_2 --> 1 - 1 Original Alignment aCGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGc tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagaCGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACA---cgtgaggactcatttatcctcatttatctgtgcaactaaaatttcaggtct Alignment from CESAR aCGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGc tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagaCGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACA---cgtgaggactcatttatcctcatttatctgtgcaactaaaatttagcctgc Alignment from Spaln_aa2Genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACC- tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagACGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACACgtgaggactcatttatcctcatttatctgtgcaactaaaatttcaggtct Alignment from Spaln_nt2Genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCC tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagACGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACACgtgaggactcatttatcctcatttatctgtgcaactaaaatttcaggtct Alignment from Pairagon ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCC tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagACGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACACgtgaggactcatttatcctcatttatctgtgcaactaaaatttcaggtct Alignment from Exonerate_protein2genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagACGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACA---Cgtgaggactcatttatcctcatttatctgtgcaactaaaatttcaggtct Alignment from Exonerate_coding2genome ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagACGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACA---Cgtgaggactcatttatcctcatttatctgtgcaactaaaatttcaggtct Alignment from GeneWise ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCC tctgttggcagccatatccttaaattgtaagtttttcttcctatccatagACGCTGCCTGGGGCCCCATGTCTGTCTTTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCTATGGGCAGTGGGCATTGTACACgtgaggactcatttatcctcatttatctgtgcaactaaaatttcaggtct #### Vwce_ID2949_4 --> 2 - 1 Original Alignment aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg tatctgtggtacagctgttttgacatgttatggtcatttatatattttagaaGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAggtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc Alignment from CESAR aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg tatctgtggtacagctgttttgacatgttatggtcatttatatattttagaaGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAggtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc Alignment from Spaln_aa2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgtggtacagctgttttgacatgttatggtcatttatatattttagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc Alignment from Spaln_nt2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgtggtacagctgttttgacatgttatggtcatttatatattttagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc Alignment from Pairagon AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgtggtacagctgttttgacatgttatggtcatttatatattttagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc Alignment from Exonerate_protein2genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgtggtacagctgttttgacatgttatggtcatttatatattttagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc Alignment from Exonerate_coding2genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgtggtacagctgttttgacatgttatggtcatttatatattttagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc Alignment from GeneWise AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgtggtacagctgttttgacatgttatggtcatttatatattttagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtcagttgtctggcagtgggggaaggtggaaggtggaatcgcatcctttc #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagggGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagggGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from GeneWise ----------------------------------------------------GTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA CAGTTGCTGTATTTTGTCATCTCAGTATGATCTCTTCTCTCGGATTTCAGGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAggtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAggtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta #### Wdr96_ID10335_36 --> 0 - 0 Original Alignment TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg Alignment from CESAR TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg Alignment from Spaln_aa2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg Alignment from Spaln_nt2Genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg Alignment from Pairagon TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg Alignment from Exonerate_protein2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg Alignment from Exonerate_coding2genome TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg Alignment from GeneWise TACCTAAACGAACCAAACTACGAGAATGTGATTGCCATTCAGATTGGAATAATGGAGCAAACGATTAGTGTTATAGATAAG ctgtactcttagcagaatcaatgttacaatacgttcctattttattacagTACCTAAATGAACCGAACTACGAGAATGTGATTGCTATACTGATTGGAATAATGGAGCAGACAATTGGTGTTGTAGATAAGgtgagtgccaagcttatcaactactcaaagcaaagtccaccataatgttg #### Wdr96_ID10337_34 --> 1 - 0 Original Alignment aTTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagaTTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc Alignment from CESAR aTTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagaTTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc Alignment from Spaln_aa2Genome ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagATTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc Alignment from Spaln_nt2Genome ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagATTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc Alignment from Pairagon ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagATTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc Alignment from Exonerate_protein2genome ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagATTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc Alignment from Exonerate_coding2genome ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagATTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc Alignment from GeneWise ATTACAGGATGAGAAAGTGAGATTCCAGGTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAAGTAGAGCTGGAGAATTTCCAGTTGATGCTGGAATATTCTGACGCAATTCTCATCAATAAGAATATAATTGAAGACTTGAATTCTGTGATTCGG agtagaaaactaacattgcagacggcttcagtctttgtgttctgtcttagATTACAGGATGAGAAGGTAAGGTTCCAGCTGAATTTGACAGTACAAATCCTTCTTAAGCAAGGACAGGTAGAGCTTGACAATTTCCAGTTGATGCTGGAATACTCTGATGCGATTCTCATCAATAAGAATATAATTGAAGACTTGAACTCTGTAATACGGgtaagagtagttcctaaagcttaattggagctccatctcttcagtcaccc #### Wdr96_ID10340_31 --> 0 - 2 Original Alignment ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAag ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTT---------TGGCCAaggtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct Alignment from CESAR ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAag ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTT---------TGGCCAaggtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct Alignment from Spaln_aa2Genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTT---------TGGCCAAGgtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct Alignment from Spaln_nt2Genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTTT---------GGCCAAGgtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct Alignment from Pairagon ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTTT---------GGCCAAGgtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct Alignment from Exonerate_protein2genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTTTGG---------CCAAGgtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct Alignment from Exonerate_coding2genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTTTGG---------CCAAGgtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct Alignment from GeneWise ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaagtcattaatgctgggtttctttcttcatagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTGGACGTTCTCTACAAACTTTGG---------CCAAGgtaacttgttcctatgcattagacactaggggtaggggcgagcatggtct #### Wdr96_ID10344_27 --> 0 - 0 Original Alignment GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt Alignment from CESAR GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt Alignment from Spaln_aa2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt Alignment from Spaln_nt2Genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt Alignment from Pairagon GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt Alignment from Exonerate_protein2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt Alignment from Exonerate_coding2genome GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt Alignment from GeneWise GTGATCCCTCAACCACCTTTCATGGCGAAAGCTGATGCTCTGTGGAGTGAAGATGAAAGGAAGCAATTCAAAGAGTACGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAG tggttgagctgatatcaacagtatcccaaagcatgtttttgttctcttagGTGTTCCCCCAACCACCTTTCATGGCAAAAGCCGATGCATTATGGAGTGAAGATGAGAGGAAGCAATTTAAAGAGTATGAGAAAAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAGTACAGAAAAgtaatgtaggggattaacttgacttacctagacccctaggtcatttaggt #### Wdr96_ID10346_25 --> 0 - 0 Original Alignment ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTTGAGATA---TTAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac Alignment from CESAR ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTTGAGATA---TTAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac Alignment from Spaln_aa2Genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTT---GAGATATTAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac Alignment from Spaln_nt2Genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTTGAGATAT---TAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac Alignment from Pairagon ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTTGAGATAT---TAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac Alignment from Exonerate_protein2genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTT---GAGATATTAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac Alignment from Exonerate_coding2genome ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTT---GAGATATTAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac Alignment from GeneWise ATCTCATTTAAAAAATACATTGCTCCATGGCAAAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAGCAAGCACGG ttgtactttatttataaaaacttagcagccattcccgttctcattgacagATTTCATTTGAG---ATATTAGCACCATGGCAGAGAGCCAAAATAAAAGAAGTGGTCTCAACCTATGAAATGGAACGGTTGCAACAAGTACGGgtacacggtcttgtgtcatagttctagttgtaaataagtgccaatcttac #### Wdr96_ID10354_17 --> 1 - 0 Original Alignment gCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccaggAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact Alignment from CESAR gCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccaggAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact Alignment from Spaln_aa2Genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccagGAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact Alignment from Spaln_nt2Genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccagGAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact Alignment from Pairagon GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccagGAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact Alignment from Exonerate_protein2genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccagGAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact Alignment from Exonerate_coding2genome GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccagGAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact Alignment from GeneWise GCGGCTTGGAGCAAACATAGCAAGTGAGATCTTTGAACACAGCCGTCCGCTAGTGCTCCATCTGTCCCAGACAGTGGAATCGGAGAGTGTATACTTAGCTTTATCGAGAGAGTCCACGAATGAGCAGCAAGAAGAGACAACTGAATCCCAA ctccctcttcttttggttcttctcctatctctcctgattgtctgccccagGAGACTTGGGGCAAATATAGCAAGTGAGATCTTTGAGCATAGCCGTCCACTTGTGCTCCACCTGTCACAGACAGTGGAATCAGAAAGTGTATACTTAGCTTTAGCGAGGGAGTCCACAAATCAGCAGCAAGAAGAGGCAACTGAATCCCAAgtgagttgtctgccttttccatctgtataaccatgttttcccttctcact #### Wdr96_ID10356_15 --> 0 - 0 Original Alignment GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg Alignment from CESAR GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg Alignment from Spaln_aa2Genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg Alignment from Spaln_nt2Genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg Alignment from Pairagon GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg Alignment from Exonerate_protein2genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg Alignment from Exonerate_coding2genome GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg Alignment from GeneWise GAACACACTGGTGTCCTTGTTCTTAAGCCTCACCAAAAAGTACAGAGCAAACAGTACGGATCTGGAACAATCTATCTGTCTTCTCACGGATTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATCCGAGATATGTTCAGTATG ccttttacctgatccctcttgactgtgtttttggcaccttctgtccccagGAACATACTGGTGTCCTTGTACTTAAGTCTCACCAAAAAATCCAGAGCAAACAGTATGGAACTGGAACAATTTATCTATCTTCTCATGGACTATGGCTTATGACAATAGCTAAATGTGGAATTCTCTGTATACGAGATATGTTCAGTATGgtgagtctaccaaatgtttgcatttctgaggaaataagaagggatggggg #### Wdr96_ID10359_12 --> 1 - 1 Original Alignment gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tggagaataacagtcatattgtatatctcttttcatgctttcaattacaggTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAggtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag Alignment from CESAR gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tggagaataacagtcatattgtatatctcttttcatgctttcaattacaggTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAggtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag Alignment from Spaln_aa2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggagaataacagtcatattgtatatctcttttcatgctttcaattacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAGgtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag Alignment from Spaln_nt2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggagaataacagtcatattgtatatctcttttcatgctttcaattacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAGgtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag Alignment from Pairagon GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggagaataacagtcatattgtatatctcttttcatgctttcaattacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAGgtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag Alignment from Exonerate_protein2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggagaataacagtcatattgtatatctcttttcatgctttcaattacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAGgtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag Alignment from Exonerate_coding2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggagaataacagtcatattgtatatctcttttcatgctttcaattacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAGgtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag Alignment from GeneWise GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggagaataacagtcatattgtatatctcttttcatgctttcaattacagGTATGACCAGCGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGAAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCATATCAAATTTTTGGGTTCACAGgtgagtcgtgggaggtcaaccagttcatgttaattatcgtagagtttaag #### Wdr96_ID10361_10 --> 0 - 0 Original Alignment ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg Alignment from CESAR ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg Alignment from Spaln_aa2Genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg Alignment from Spaln_nt2Genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg Alignment from Pairagon ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg Alignment from Exonerate_protein2genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg Alignment from Exonerate_coding2genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg Alignment from GeneWise ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA gtttagcaagtgctcatttggtgtatctctccttccatggtccgtgacagGCACTTACTAGTCCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCCTTAAAACTCAAgtaaaggtgttctaaaaatccacaaatcattaaaatagctattctgcctg #### Wdr96_ID10365_6 --> 0 - 1 Original Alignment CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAggtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc Alignment from CESAR CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGg ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAggtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc Alignment from Spaln_aa2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAGgtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc Alignment from Spaln_nt2Genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAGgtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc Alignment from Pairagon CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAGgtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc Alignment from Exonerate_protein2genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAGgtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc Alignment from Exonerate_coding2genome CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAGgtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc Alignment from GeneWise CCGAAAGATGACATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAAGAGGGTCATCTTCTGATGATTAACACAGAAACCCTGAAGGTGACCGTGCTCCAGAAGGCGGAGGAGTTTCCACTTCCGG ttaaaataaagactcattgaactgctgggctcttcttggtttctccgcagCCAAAAGATGACATATATCCTCTGCTTCAACCAACAATGCACTGTTGGACTCCATCAAGTGACTTGTATGTTGGTTGTGAAGAAGGTCATCTTTTGATGATTAATACAGAAACTTTGAAGGTGACTGTGCTACAGAAGGCAGAGGAGTTTCCACTTCCAGgtaagacagtgctctccctacaaccaaagcataggcaatcaggtgagttc #### Wdr96_ID10367_4 --> 1 - 2 Original Alignment gAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAag acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccaggAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAaggtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc Alignment from CESAR gAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAag acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccaggAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAaggtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc Alignment from Spaln_aa2Genome GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAAG acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccagGAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAAGgtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc Alignment from Spaln_nt2Genome GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAAG acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccagGAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAAGgtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc Alignment from Pairagon GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAAG acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccagGAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAAGgtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc Alignment from Exonerate_protein2genome GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAAG acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccagGAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAAGgtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc Alignment from Exonerate_coding2genome GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAAG acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccagGAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAAGgtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc Alignment from GeneWise GAACTGGGAAGCCAGTGCCATCTTGTGCAAGAAATCAAATCCCGGCATGGATGTGAGCCAGATGTCCTTCAACCCCATGAACTGGCACCAAATGTGTTTATCAAGTTCAAGTGCGATGAGCGTGTGGACCATTGAGAGAAGTAACCAGGAGCACCATTTCAGGATAAG acattttcatcaatcaattgccaattgcgcaatgcctgtcaccctcccagGAACTGGGAGGCTAGTGCAATCTTGTGCAAGAAATCTAACCCTGGCATGGATGTGAGCCAGATGACTTTCAACCCCATGAATTGGCACCAAATGTGTTCAGCATGTACAAGCGCAATGAGTGTGTGGACCATTGAGAAAAGTAACCAGGATCACCATTTCCGGATAAGgtcagagcctttgctgttcaatatctgtgtggggatcttcactagtgttc #### Wdr96_ID10369_2 --> 1 - 1 Original Alignment aTGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAg agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagaTGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAggtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata Alignment from CESAR aTGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAg agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagaTGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAggtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata Alignment from Spaln_aa2Genome ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagATGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAGgtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata Alignment from Spaln_nt2Genome ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagATGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAGgtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata Alignment from Pairagon ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagATGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAGgtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata Alignment from Exonerate_protein2genome ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagATGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAGgtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata Alignment from Exonerate_coding2genome ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagATGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAGgtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata Alignment from GeneWise ATGGGTGCAAGGATTCCCTAGTCAGAACGTCCACTTTGTCAATGACCAGACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATTGTGGGCGTCATGGCAACTAATGTGCCCAGTGAAGTCGTGGCTTTCTCTGACCGAAGATTTAAACCTGTTATCTACATATACAGCTTCCCATCGCTGACCAGAAAAAACAAGTTAAAAG agtcagtatgtatcacgggcttggggagtctcataaatatcttgttgcagATGGGTACAGGGATTCCCTGGCCAGAATGTTCGTTTTGTCAATGACCATACCATCTGCTACCCTTCTGGGAACTTTGTAATATTCATTAACCTTGAAACCCAGAAGAAGACAGTACTACAGTGTATTAATGGCATAGTAGGTGTCATGGCAACTAATGTGCCCAGTGAAGTTGTGGCTTTCTCCGACCGAAGATTTAAACCTGTCATCTACAAGTACAGCTTCCCATCACTGACACGAAAAAACAAACTAAAAGgtcggggaggtgtcctgccactctcccaacagttgaatcagccttacata #### Wnt8b_ID9020_3 --> 0 - 1 Original Alignment GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCg acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCagtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat Alignment from CESAR GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCg acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCagtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat Alignment from Spaln_aa2Genome GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCAgtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat Alignment from Spaln_nt2Genome GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCAgtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat Alignment from Pairagon GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCAgtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat Alignment from Exonerate_protein2genome GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCAgtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat Alignment from Exonerate_coding2genome GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCAgtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat Alignment from GeneWise GCTTACCTGGTCTACTCCAGCAGCGTGGCCGCTGGCGCCCAGAGTGGTATTGAAGAATGTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCCGAGAGAGCTTTACAGCTGTCCAGCCATGGTGGACTTCGAAGCG acatgtcgcctgagctgtgtggctaaattgttcccactttctgcctccagTCTTACCTGGTCTACTCCAGCAGTGTATCTGCAGGTGCCCAGAGTGCAATTGAAGAATCTAAATACCAGTTTGCTTGGGACCGTTGGAATTGCCCTGAGAGAGCCTTACAGCTGTCCAGTGATGGGGGACTTCGAAGCAgtaaaaggggccttttccctccatgtcctaaacctggcctagactatgat #### Xpnpep1_ID11144_12 --> 1 - 2 Original Alignment gCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACgc ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaaggCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACgcgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct Alignment from CESAR gCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACgc ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaaggCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACgcgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct Alignment from Spaln_aa2Genome GCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACGC ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaagGCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACGCgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct Alignment from Spaln_nt2Genome GCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACGC ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaagGCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACGCgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct Alignment from Pairagon GCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACGC ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaagGCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACGCgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct Alignment from Exonerate_protein2genome GCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACGC ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaagGCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACGCgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct Alignment from Exonerate_coding2genome GCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACGC ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaagGCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACGCgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct Alignment from GeneWise GCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGCACGGGACCCAACGGCGCCATCATCCACTACGC ctatggtaatggttaggcttgtagagaccttcctacgtgtctgtttaaagGCAGCAGGCTGACTTTGTGGATCTGAGCTTCCCAACGATTTCCAGTACGGGACCCAATGGCGCCATCATCCACTACGCgtaagtcatgtaaatggagaggcacagggcagctagccttgaatctgcct #### Xpnpep1_ID11146_10 --> 0 - 0 Original Alignment ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt Alignment from CESAR ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt Alignment from Spaln_aa2Genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt Alignment from Spaln_nt2Genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt Alignment from Pairagon ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt Alignment from Exonerate_protein2genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt Alignment from Exonerate_coding2genome ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt Alignment from GeneWise ATTAAAGATGCCGTTGCCCTCTGCGAACTCTTCAACTGGCTGGAGCAAGAG tgggattagtatgacctgcacatggttaggaatcggggctgtttttccagATTAAAGATGCTGTTGCCCTCTGTGAACTCTTCAACTGGCTGGAGCAAGAGgtaggtggttgtctcagccttgtcttaaagatcatatgattttagagctt #### Xpnpep1_ID11148_8 --> 1 - 0 Original Alignment gCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacaggCTCTTCATTGATGGGGATCGTGTT---GCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca Alignment from CESAR gCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacaggCTCTTCATTGATGGGGATCGTGTT---GCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca Alignment from Spaln_aa2Genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacagGCTCTTCATTGATGGGGATCGTGTT---GCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca Alignment from Spaln_nt2Genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacagGCTCTTCATTGATGGGGATCGTGT---TGCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCT------------TGCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca Alignment from Pairagon GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacagGCTCTTCATTGATGGGGATCGTGT---TGCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCT------------TGCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca Alignment from Exonerate_protein2genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacagGCTCTTCATTGATGGGGATCGTGTT---GCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca Alignment from Exonerate_coding2genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacagGCTCTTCATTGATGGGGATCGTGTT---GCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca Alignment from GeneWise GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctccgttcatgtgccttcctttgcagagtatcccatgtctctttgcacagGCTCTTCATTGATGGGGATCGTGTT---GCACCAGGTGTGAAGCAGCACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCCAAGgtaaggagccttcccgtaaatacatgttgtttgaggggccctggaagaca #### Xpnpep1_ID11152_5 --> 2 - 1 Original Alignment atTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAg acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagacTACTGGAAGAGGATGGCCAAGGTACTGCGAAGT---GGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAggtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa Alignment from CESAR atTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAg acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagacTACTGGAAGAGGATGGCCAAGGTACTGCGAAGT---GGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAggtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa Alignment from Spaln_aa2Genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagACTACTGGAAGAGGATGGCCAAGGTACTGCGAAGT---GGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAGgtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa Alignment from Spaln_nt2Genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagACTACTGGAAGAGGATGGCCAAGGTACTGCGAAG---TGGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAGgtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa Alignment from Pairagon ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagACTACTGGAAGAGGATGGCCAAGGTACTGCGAAG---TGGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAGgtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa Alignment from Exonerate_protein2genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagACTACTGGAAGAGGATGGCCAAGGTACTGCGAAGT---GGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAGgtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa Alignment from Exonerate_coding2genome ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagACTACTGGAAGAGGATGGCCAAGGTACTGCGAAGT---GGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAGgtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa Alignment from GeneWise ATTACTGGAAGAAGATGGCCAAGGTACTGCGAAGTGCTGGTCACCACCTCGTGCCTGTGAAGGAGAACCTTGTGGACAAGATCTGGACAGACCGGCCGGAGCGCCCTTGCAAGCCCCTCCTCACACTGGGCCTGGATTATACAG acttgtgaaatgagtgtttattttgcagtcatcttcatctttcccctcagACTACTGGAAGAGGATGGCCAAGGTACTGCGAAGT---GGTCATCACCTTGTGCCTGTGAGGGAGAACCTTGTTGACAAGATTTGGACAGACCGCCCAGAGCGTCCTTGCAAACCCCTCCTGATATTGGGCTTGGATTATACAGgtgagtgtgaatgctgtgggagaatactctaaacatctccatgcaagtaa #### Yif1a_ID832_4 --> 0 - 1 Original Alignment AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAagtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from CESAR AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAagtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Spaln_aa2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Spaln_nt2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Pairagon AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Exonerate_protein2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from Exonerate_coding2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg Alignment from GeneWise AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgatgtattttacttcccctttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTGCCCCCACGGAAAGATCTCAATACCCCTGACCTTTATATCCCAAgtgagttggtgatgtacagtcaacctccatctatgtacttagcaacaatg #### Yif1a_ID833_5 --> 2 - 2 Original Alignment ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagccATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAaggtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from CESAR ccATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagccATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAaggtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Spaln_aa2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Spaln_nt2Genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Pairagon CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Exonerate_protein2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Exonerate_coding2genome CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from GeneWise CCATGGCCTTCATCACATACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACAGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttgctcattccttctctgtaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGgggtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttgctcattccttctctgtaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGgggtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt #### Zdhhc24_ID713_2 --> 1 - 1 Original Alignment tTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAg ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagtGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAggtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct Alignment from CESAR tTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAg ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagtGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAggtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct Alignment from Spaln_aa2Genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagTGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct Alignment from Spaln_nt2Genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagTGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct Alignment from Pairagon TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagTGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct Alignment from Exonerate_protein2genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagTGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct Alignment from Exonerate_coding2genome TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagTGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct Alignment from GeneWise TTACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGGGCTGCTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCACATCTCAGTGCTGCTAGGCCCCGCCCTGTCAGCCTTGCTGCAGGCCCACTCAGCCCTCTACACAGTGGCTCTCCTGCTGTTGCCCTGGCTCATGCTACTCACAG ctgacaggtatatattcactgatctgtgtgacccccgtgttgtcccgcagTGACTGTTACCAGTGCCAAAGCCAGGTGCCACCTCGTAGTGGTCACTGCTCTGCCTGCCGTGTGTGCATCCTACGTCGTGACCATCACTGTCGCCTATTGAGCTGTTGTGTGGGCTTCCATAATTACCGGCCCTTCCTGTGTCTCCTGCTTCACTCTGCTGGTGTCCTGCTCCATATCTCAGTGCTGCTAGGCCCCGCCCTATCAGCCTTGCTGCAGGCCCACTTAGCCCTTTACACAGTGGCTCTCCTGTTGTTGCCCTGGCTCATGCTACTCACAGgtatgccgcttacagagctgacgcttactgaattttctgaagctgaagct #### Zfand5_ID4880_3 --> 1 - 1 Original Alignment aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcaggAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAggtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct Alignment from CESAR aAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAg tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcaggAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAggtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct Alignment from Spaln_aa2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAGgtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct Alignment from Spaln_nt2Genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAGgtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct Alignment from Pairagon AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAGgtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct Alignment from Exonerate_protein2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAGgtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct Alignment from Exonerate_coding2genome AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAGgtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct Alignment from GeneWise AAATGTGCCTGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCGAAAACAGAGGTGTCAGAGCCAG tttaaatgacaatttatctgagagaaaagaccctacactttccttgtcagGAATGTGCCCGTGGCTGCCTTGCCTGTAACTCAACAAATGACAGAAATGAGCATTTCAAGAGAGGACAAAATAACTACCCCACAAACCGAAGTGTCAGAGCCAGgtgagttttgtaattgtgggaaagaacctgagctgatcgaagttttctct #### Zfp91_ID3458_8 --> 1 - 0 Original Alignment aAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagaAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat Alignment from CESAR aAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagaAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat Alignment from Spaln_aa2Genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagAAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat Alignment from Spaln_nt2Genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagAAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat Alignment from Pairagon AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagAAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat Alignment from Exonerate_protein2genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagAAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat Alignment from Exonerate_coding2genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagAAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat Alignment from GeneWise AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tggaacagcacttccattgctcccccctaagagccgtcatgtttctttagAAAAAAGCCTCCAATCAAGTATGTTCGTTGTGAGATGGAAGGATGTGGTTCTGTTCTTGCTCACCCTCATTATCTCCAGgtgaataaaatacaggacagtctttatagagtatccatttctttccatat #### Zfp91_ID3459_7 --> 1 - 2 Original Alignment gAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGag ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtaggCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGaggtaagcggggcttttcacattaggtgctacacatttcatttaattaattt Alignment from CESAR gAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGag ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtaggCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGaggtaagcggggcttttcacattaggtgctacacatttcatttaattaattt Alignment from Spaln_aa2Genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtagGCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGAGgtaagcggggcttttcacattaggtgctacacatttcatttaattaattt Alignment from Spaln_nt2Genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtagGCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGAGgtaagcggggcttttcacattaggtgctacacatttcatttaattaattt Alignment from Pairagon GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtagGCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGAGgtaagcggggcttttcacattaggtgctacacatttcatttaattaattt Alignment from Exonerate_protein2genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtagGCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGAGgtaagcggggcttttcacattaggtgctacacatttcatttaattaattt Alignment from Exonerate_coding2genome GAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtagGCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGAGgtaagcggggcttttcacattaggtgctacacatttcatttaattaattt Alignment from GeneWise -AGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAAAAGGAG ttaacatgaggctcacttaaaatagttataaaattaaaactgtcttgtagGCGGGGGCGTAGGCGAAAGGATGACAAAGGCCCACAGCTACCCAATAGGAGgtaagcggggcttttcacattaggtgctacacatttcatttaattaattt #### Zfp91_ID3461_5 --> 1 - 2 Original Alignment tAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAag agtcttgtttagagaccagtgttcattaccccccccccttttttttccagcAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAaggtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa Alignment from CESAR tAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAag agtcttgtttagagaccagtgttcattaccccccccccttttttttccagcAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAaggtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa Alignment from Spaln_aa2Genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG agtcttgtttagagaccagtgttcattaccccccccccttttttttccagCAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAAGgtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa Alignment from Spaln_nt2Genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG agtcttgtttagagaccagtgttcattaccccccccccttttttttccagCAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAAGgtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa Alignment from Pairagon TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG agtcttgtttagagaccagtgttcattaccccccccccttttttttccagCAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAAGgtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa Alignment from Exonerate_protein2genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG agtcttgtttagagaccagtgttcattaccccccccccttttttttccagCAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAAGgtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa Alignment from Exonerate_coding2genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG agtcttgtttagagaccagtgttcattaccccccccccttttttttccagCAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAAGgtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa Alignment from GeneWise TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG agtcttgtttagagaccagtgttcattaccccccccccttttttttccagCAGCGACGAGGAAGAGGAAGAGGAGGAAGAAATGTTAATCAGTGAAGAAGAAGTATCCTTCAAAGATGACCCAAGAGATGAGTCTTATAAGCCCCACCTAGAAAGgtaagtttgagattttaccatatacacatagcaagagaaatctgtatcaa #### Zfyve27_ID8423_5 --> 1 - 1 Original Alignment gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg gttcagtgccatcctcattgctactaagattgtacctctttgtgattcaggTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAggtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa Alignment from CESAR gTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAg gttcagtgccatcctcattgctactaagattgtacctctttgtgattcaggTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAggtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa Alignment from Spaln_aa2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG gttcagtgccatcctcattgctactaagattgtacctctttgtgattcagGTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAGgtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa Alignment from Spaln_nt2Genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG gttcagtgccatcctcattgctactaagattgtacctctttgtgattcagGTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAGgtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa Alignment from Pairagon GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG gttcagtgccatcctcattgctactaagattgtacctctttgtgattcagGTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAGgtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa Alignment from Exonerate_protein2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG gttcagtgccatcctcattgctactaagattgtacctctttgtgattcagGTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAGgtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa Alignment from Exonerate_coding2genome GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG gttcagtgccatcctcattgctactaagattgtacctctttgtgattcagGTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAGgtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa Alignment from GeneWise GTTCTATGGCGCTCTTCTGGGCATGGTGTGCATGCTCTACCTGCTACCGCTCTGCTGGGTCCTCGCCCTGTTAAATAGCACACTCTTCCTGGGAAATGGGGACTTCTTCCGAG gttcagtgccatcctcattgctactaagattgtacctctttgtgattcagGTTCTATGATGCTCTTCTGGGCATGGTCTGCATGCTATATCTGCTTCCACTCTGCTGGGTCCTTGCCCTGTTAAATAGTACACTCTTCTTGGGCAATGGGGACTTCTTCCGAGgtaagacatgacacccatacctgcttgagtgccctagaatgaacttacaa #### Zfyve27_ID8424_6 --> 2 - 0 Original Alignment tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagtaGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga Alignment from CESAR tgGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagtaGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga Alignment from Spaln_aa2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagTAGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga Alignment from Spaln_nt2Genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagTAGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga Alignment from Pairagon TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagTAGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga Alignment from Exonerate_protein2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagTAGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga Alignment from Exonerate_coding2genome TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagTAGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga Alignment from GeneWise TGGTGTGTGAGTACAGGGCCTGCCTGCAGCGGAGGATGAACCCCCGGCAGGAAGAGTGTGCCTGTGAGAGCTCAGCACTGCAGGGGGCCGGAGGGAGGGGCCTGCTGGACAGCTCGCCTGCCCCCACACCCACCGAG gattaataatatagtatattctctggctaaaaaatatttttcctttttagTAGTGTGTGAGTACAGAGCCTGCCTACAGCGGAGGATCAACCCACGGCTTGAAGAGTGTGCATGTGAGAGCTCTGCACTACAGGGGTCTGGAGGGCGAGGCTTGCTGGACAGCTCACCTGCTCCTGCACCAACTGAGgtaagagtgagccttcaatctggtcagggcctgctgccagtctctcacga #### Zfyve27_ID8426_8 --> 0 - 0 Original Alignment GAGACCCACCTGGTGGTGCTG ctagctcctatcttttgattttaacaccaaattttggcctcttcacccagGAAACCCACTTGGTGGTGCTGgtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc Alignment from CESAR GAGACCCACCTGGTGGTGCTG ctagctcctatcttttgattttaacaccaaattttggcctcttcacccagGAAACCCACTTGGTGGTGCTGgtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc Alignment from Spaln_aa2Genome GAGACCCACCTGGTGGTGCTG ctagctcctatcttttgattttaacaccaaattttggcctcttcacccagGAAACCCACTTGGTGGTGCTGgtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc Alignment from Spaln_nt2Genome GAGACCCACCTGGTGGTGCTG ctagctcctatcttttgattttaacaccaaattttggcctcttcacccagGAAACCCACTTGGTGGTGCTGgtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc Alignment from Pairagon GAGACCCACCTGGTGGTGCTG ctagctcctatcttttgattttaacaccaaattttggcctcttcacccagGAAACCCACTTGGTGGTGCTGgtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc Alignment from Exonerate_protein2genome GAGACCCACCTGGTGGTGCTG ctagctcctatcttttgattttaacaccaaattttggcctcttcacccagGAAACCCACTTGGTGGTGCTGgtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc Alignment from Exonerate_coding2genome GAGACCCACCTGGTGGTGCTG ctagctcctatcttttgattttaacaccaaattttggcctcttcacccagGAAACCCACTTGGTGGTGCTGgtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc Alignment from GeneWise ctagctcctatcttttgattttaacaccaaattttggcctcttcacccaggaaacccacttggtggtgctggtaaattgaagtagcctgaaaggtggggtcaggctaagcagactacgccc #### Zp1_ID3070_2 --> 2 - 0 Original Alignment atGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagatGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTTCT---GATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt Alignment from CESAR atGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagatGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTTCT---GATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt Alignment from Spaln_aa2Genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTTCT---GATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt Alignment from Spaln_nt2Genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTT---CTGATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt Alignment from Pairagon ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTT---CTGATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt Alignment from Exonerate_protein2genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTTCT---GATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt Alignment from Exonerate_coding2genome ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTTCT---GATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt Alignment from GeneWise ATGAATTTGGGAACCGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTCTCAGCTGATTACAAAGGCTGCCACGTTCTAGAGAAG agttgcaccagtggctgaagatccctccttcctgtcgcttttacatttagATGAATTCGGGAAATGGTTTGAGGTGAATAACTGCTCTATCTGCTACCACTGGGTGACCAGTGAGGCCCAGGAGCACACAGTATTTTCT---GATTACAAAGGCTGTCATCTTCTAGAGAAGgtgattaggtgaggcacatataaggacactggtagagttgtcctcactgt ####