#### 1700028P14Rik_ID5186_3 --> 0 - 2 Original Alignment AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAag tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGcagtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg Alignment from CESAR AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAag tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGcagtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg Alignment from Spaln_aa2Genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGCAgtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg Alignment from Spaln_nt2Genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGCAgtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg Alignment from Pairagon AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGCAgtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg Alignment from Exonerate_protein2genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGCAgtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg Alignment from Exonerate_coding2genome AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGCAgtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg Alignment from GeneWise AGGTGGATGTCGGAAGCACGTGAACAGATGGCCCAAGTTCTTGTAAACAAAGACTTGGTGGAGAAGAAGAAAACGGGCTTGCTGGATGAGGAAACACTATGCCCCGGGATTTTGGAAAG tgaattttggagctgttccagtctgatttgtgtttcttccatgcttatagAGGTGGATGTCAGGGGTGCATGAACAGATGGCCCAAGTTCTTGTAAATAAAGATCTGGTGGAGAAGAAGAAAACTGGCTTGTTGGATGAGGAGACATTATGCCCTGGTATCTTGGAGCAgtacgtcttgttcttcagcctgtcattgcctcagctgttaggttcatggg #### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacaggaAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacaggaAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt #### 1700055N04Rik_ID231_9 --> 0 - 1 Original Alignment GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGggtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca Alignment from CESAR GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGg tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGggtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca Alignment from Spaln_aa2Genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGGgtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca Alignment from Spaln_nt2Genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGGgtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca Alignment from Pairagon GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGGgtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca Alignment from Exonerate_protein2genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGGgtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca Alignment from Exonerate_coding2genome GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGGgtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca Alignment from GeneWise GTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGG tgctctcaatcaaacagctccatgtgaatacagctcaggcctctccgtagGTCATCAAACAGGCTTTTGCTCGGACCAGTGGTGGAGGCTTCTGTGGGAATGATGGGTTCATGTACATGACTCTGTCCAGCCTCCCTTTTGGAGGAGTGGgtaaggtaatgtaaagttctgccctcctgggccaaccttcttcctcctca #### 1700123I01Rik_ID1492_4 --> 2 - 1 Original Alignment atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagacAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTggtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca Alignment from CESAR atAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCg acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagacAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTggtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca Alignment from Spaln_aa2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagACAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTGgtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca Alignment from Spaln_nt2Genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagACAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTGgtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca Alignment from Pairagon ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagACAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTGgtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca Alignment from Exonerate_protein2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagACAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTGgtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca Alignment from Exonerate_coding2genome ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagACAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTGgtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca Alignment from GeneWise ATAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTTAAACATGGGGAAAGCATCCTGACGCCCTACCCGTTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGACTTGCCTTCCG acagttatacacatgcatccttctttctgtgccaaaatgttgatttttagACAAAAGCAAGTGGGAGAGAGTTTCCCACCTGAAGTTCAAATATGGGGAAAGCATTCTGACACCCTACCCATTTGTTTTTACTTTGTATATAGAGATGAAATGGTTTGCTGAAGATTTGCCTTCTGgtaagcaaagcttaaacagaagagcgcagtgcccaggaacattttctgca #### 2410127L17Rik_ID4446_2 --> 1 - 0 Original Alignment cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt Alignment from CESAR cACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctagtACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt Alignment from Spaln_aa2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt Alignment from Spaln_nt2Genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt Alignment from Pairagon CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt Alignment from Exonerate_protein2genome CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt Alignment from Exonerate_coding2genome GGCACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctAGTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt Alignment from GeneWise CACCAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCCCTTCCAGAGAACCAGCAGAAACTGCTTCCTCAGTTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTCGAAAATAAAGAATATGGAGAAGAT cacaaaagagttctattgttaaactcaaattgaactctttttccttctagTACTAGCATGCATGAACGAGTGAACAGAACAGAAAGACAGTTTCGGTCACTGCCAGAGAACCAGCAGAAACTGCTTCCCCAATTTCCTCTTCACTTGGACAAGATCCGGAAATGCATTGACCATAATCAGGAAATACTGCTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGAGAAGATgtaagtgacattgtctctattgatattcccagcacactttaattagggtt #### 4430402I18Rik_ID6182_8 --> 2 - 0 Original Alignment caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactacatagagactgaccaatttttctctctgtgtttgcagcaCCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc Alignment from CESAR caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactacatagagactgaccaatttttctctctgtgtttgcagcaCCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc Alignment from Spaln_aa2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactacatagagactgaccaatttttctctctgtgtttgcagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc Alignment from Spaln_nt2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactacatagagactgaccaatttttctctctgtgtttgcagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc Alignment from Pairagon CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactacatagagactgaccaatttttctctctgtgtttgcagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc Alignment from Exonerate_protein2genome TTGATCTTTCGAAGAAAAGAGCATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactacatagagactgaccaaTTTTTCTCTCTGTGTTTGCAGCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc Alignment from Exonerate_coding2genome aactgctgcactacatagagactgaccaatttttctctctgtgtttgcagcaccttcacttgatagccttgaggcaaacataaaggtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc Alignment from GeneWise aactgctgcactacatagagactgaccaatttttctctctgtgtttgcagcaccttcacttgatagccttgaggcaaacataaaggtaccgacctaagcagcatccatggttagtttagtcacagcacctaattc #### 4430402I18Rik_ID6183_7 --> 0 - 1 Original Alignment GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAG---AAAAGAg taagacagtgatccatgaaaccacaggaatgcagaggtttgtttttccagGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTGT------------------------GACTTAATAAACTTTGATCTTTTGAAAAGTCAAAGAggtacatacatttctttctcagctgttccctcataactgtgggcttgatgc Alignment from CESAR GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAG---AAAAGAg taagacagtgatccatgaaaccacaggaatgcagaggtttgtttttccagGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTGT------------------------GACTTAATAAACTTTGATCTTTTGAAAAGTCAAAGAggtacatacatttctttctcagctgttccctcataactgtgggcttgatgc Alignment from Spaln_aa2Genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAG---AAAAGAG taagacagtgatccatgaaaccacaggaatgcagaggtttgtttttccagGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTGTGAC------------------------TTAATAAACTTTGATCTTTTGAAAAGTCAAAGAGgtacatacatttctttctcagctgttccctcataactgtgggcttgatgc Alignment from Spaln_nt2Genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGA---AAAGAG taagacagtgatccatgaaaccacaggaatgcagaggtttgtttttccagGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTG------------------------TGACTTAATAAACTTTGATCTTTTGAAAAGTCAAAGAGgtacatacatttctttctcagctgttccctcataactgtgggcttgatgc Alignment from Pairagon GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGA---AAAGAG taagacagtgatccatgaaaccacaggaatgcagaggtttgtttttccagGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTG------------------------TGACTTAATAAACTTTGATCTTTTGAAAAGTCAAAGAGgtacatacatttctttctcagctgttccctcataactgtgggcttgatgc Alignment from Exonerate_protein2genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAGCAT taagacagtgatccatgaaaccacagGAATGCAGAGGTTTGTTTTTCCAGGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTGTGACTTAATAAACTTTGATCTTTTGAAAAGTCAAAGAGgtacatacatttctttctcagctgttccctcataactgtgggcttgatgc Alignment from Exonerate_coding2genome GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGT taagacagtgatccatgaaaccacaggaatgcagaggtttgtttttccagGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTGTgacttaataaactttgatcttttgaaaagtcaaagaggtacatacatttctttctcagctgttccctcataactgtgggcttgatgc Alignment from GeneWise GTGGACAGTGGGAACCCATTTGGTGAAAATAATTTGGAGCACTGTTCGAAGAAGTCCAGAAGAAAACCTAAGTTAATAAACTTTGATCTTTCGAAGAAAAGAGCATCTTCTCTTGACAGCCTGGAGGCG taagacagtgatccatgaaaccacaggaatgcagaggtttgtttttccagGTTGATAGTGGGAACCCCTTTGGAGAGAACAATCTGGAGCACTGTGAC------------------------TTAATAAACTTTGATCTTTTGAAAAGTCAAAGAGGTACATACATTTCTTTCTCAGCTgttccctcataactgtgggcttgatgc #### 4430402I18Rik_ID6184_6 --> 0 - 0 Original Alignment GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACAG------TTACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc Alignment from CESAR GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACAG------TTACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc Alignment from Spaln_aa2Genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACAG------TTACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc Alignment from Spaln_nt2Genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACAGT------TACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc Alignment from Pairagon GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACA------GTTACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc Alignment from Exonerate_protein2genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACAG------TTACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc Alignment from Exonerate_coding2genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACAG------TTACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc Alignment from GeneWise GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttcctcagcagtgtactctctttatctggattgatatcattttgtttcagGAAGAGAGGTGTATATTGGAAAGATCAGTCTCAAAATCCCATGGACAGAGAGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCCAAAGGGACACAG------TTACCCTCCCCTCAACATCTTCGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGAGAGAGGAAACCTCCCTTTGTAGTTAGACATgtaggattaaggaagaatctctctgtgccaccacactgatttccatttcc #### 4930506M07Rik_ID12854_16 --> 2 - 2 Original Alignment gtCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTca tggatgatatcacaaaggatcattaaccacacctttctttgtccttccaggtCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCcagtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat Alignment from CESAR gtCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTca tggatgatatcacaaaggatcattaaccacacctttctttgtccttccaggtCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCcagtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat Alignment from Spaln_aa2Genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcattaaccacacctttctttgtccttccagGTCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat Alignment from Spaln_nt2Genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcattaaccacacctttctttgtccttccagGTCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat Alignment from Pairagon GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcattaaccacacctttctttgtccttccagGTCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat Alignment from Exonerate_protein2genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcattaaccacacctttctttgtccttccagGTCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat Alignment from Exonerate_coding2genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcattaaccacacctttctttgtccttccagGTCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat Alignment from GeneWise GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcattaaccacacctttctttgtccttccagGTCCTACCGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGGGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAGGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaagataagtgttcaccttcatttaccagaaccaggatgcctctccaat #### 4930506M07Rik_ID12866_9 --> 0 - 0 Original Alignment ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca Alignment from CESAR ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca Alignment from Spaln_aa2Genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca Alignment from Spaln_nt2Genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca Alignment from Pairagon ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca Alignment from Exonerate_protein2genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca Alignment from Exonerate_coding2genome ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca Alignment from GeneWise ATGTTCATTGAACAAAACAAACTGAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCCTTCCTGACCAGCAGCTTTTGAAAGCTTTAGACGAAAACGCAAAACTTATCCAGCAGCTTGAAGAAGAGAGGATCCAGCATCAGAAAAAG gcatgcatgattgaggttggtacatacaccctgtctcttccttgtcacagATGTTCATTGAACAAAACAAGCTGAATAGACAAAGTCACCTTCTGTTGCAAAGCTCTCTCCCTGACCAGCAGATTTTGAAAGCCTTAGATGAAAATGCAAAGCTTATCCAACAGCTTGAGGAAGAGAGGATCCAGCACCAGAAAAAGgtaagagtctatattctgtatctactaacatgtataaacatatacagcca #### 4930506M07Rik_ID12868_8 --> 2 - 0 Original Alignment tgTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagtgTCCATGTTGGCTGTTGAG---TATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa Alignment from CESAR tgTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagtgTCCATGTTGGCTGTT---GAGTATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa Alignment from Spaln_aa2Genome TGTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagTGTCCATGTTGGCTGTT---GAGTATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa Alignment from Spaln_nt2Genome TGTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagTGTCCATGTTGGCTGTT---GAGTATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa Alignment from Pairagon TGTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagTGTCCATGTTGGCTGTT---GAGTATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa Alignment from Exonerate_protein2genome TGTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagTGTCCATGTTGGCTGTT---GAGTATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa Alignment from Exonerate_coding2genome TGTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagTGTCCATGTTGGCTGTT---GAGTATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa Alignment from GeneWise TGTCCATGTTGGCTGTTGAAGAGTATGAGGAACTGCAAGTGAACCTGGAACTGGAGAAGGACCTTCGCAAGAAAGCAGAGTCTTTTGCACAAGAG tgggaagctcgtgattgagtttagctgtttatggtttgtttcctccccagTGTCCATGTTGGCTGTTGAG---TATGAGGAACTGCATGTAAACCTGGAGCTAGAGAAGGAACCTAGTGAGAAAGCTGAGTCTTTTGCACAGGCAgtgagattaatacagaagacaggagatctttatagagcacgtgaaagcaa #### 4930506M07Rik_ID12870_7 --> 0 - 1 Original Alignment GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAg gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAggtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc Alignment from CESAR GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAg gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAggtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc Alignment from Spaln_aa2Genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc Alignment from Spaln_nt2Genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc Alignment from Pairagon GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc Alignment from Exonerate_protein2genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc Alignment from Exonerate_coding2genome GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc Alignment from GeneWise GTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAG gcatggcccccccctctctcacaggagcttccatttgtggcatttctaagGTAAATAAAGTTAAGCAAGAAAAAGCTGTTTTAAATTCAGAAGTCCTTGAGCAGAGGAAAGTCTTAGAAAAATGCAACAGAGgtaagttaagtatctgcagccttgctgctttttgcagaattttggctacc #### 4930506M07Rik_ID12871_6 --> 2 - 0 Original Alignment aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagaaCTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag Alignment from CESAR aaCTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagaaCTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag Alignment from Spaln_aa2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagAACTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag Alignment from Spaln_nt2Genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagAACTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag Alignment from Pairagon AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagAACTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag Alignment from Exonerate_protein2genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagAACTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag Alignment from Exonerate_coding2genome AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagAACTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag Alignment from GeneWise AACTTCGAGATCAAATTGTGTCTGTTCAGGAAGAAAAGAAGGTGTTAGCCATCGAGCTGGAAAACCTCAAGAGCAAACTCGGGGAGGTGATGGAGGAG tgaaaagtggaaaatgatgactaatattacaagggctttctcatctttagAACTTCAGGATCAAATTGTTGCTGTACAGGAAAAAAAGAAGGTACTGGCCAATGAGCTAGAAAACCTCAAGGGCAAACTTGGGGAGGTGATGGAGGAAgtaggaaacctagaggtctgttgctacagtccacctatgtaatccagaag #### 4930506M07Rik_ID12886_2 --> 2 - 0 Original Alignment ccATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagccATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca Alignment from CESAR ccATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagccATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca Alignment from Spaln_aa2Genome CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagCCATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca Alignment from Spaln_nt2Genome CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagCCATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca Alignment from Pairagon CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagCCATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca Alignment from Exonerate_protein2genome CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagCCATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca Alignment from Exonerate_coding2genome CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagCCATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca Alignment from GeneWise CCATTGGCGAATATGAAGACCTTCGAGCAGAGAACCAGAAAACAAAGGAGAAG tgcctagtgaactttcaggaatcatcacagctacatgcttgtctctgcagCCATTGGTGAATATGAAGACCTCCGAGCAGAGAACCAAAAAACCAAGGAGAAAgtgagtgtagatcagacatcctttttatcaaaggtatgcctctttggaca #### 9130011E15Rik_ID9625_23 --> 1 - 0 Original Alignment aGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagaGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta Alignment from CESAR aGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagaGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta Alignment from Spaln_aa2Genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta Alignment from Spaln_nt2Genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta Alignment from Pairagon AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta Alignment from Exonerate_protein2genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta Alignment from Exonerate_coding2genome AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta Alignment from GeneWise AGCCATCATCAATCACTTTAATCCCAAAATTGAGTCCTATGCTGCTGTGAATCACATATCTCAACTGTCGGAGGAACAG ttgggaataatgcttactcacttctgttccacacacattgtgtcctacagAGCTATCATTAATCACTTTAATCCCAAAATTGAGTCATATGCCGCTGTTAATCACATATCCCAACTGTCGGAGGAACAGgtaagtcattgctttctttgaccggaataatcttactggtgagaaggtta #### 9130011E15Rik_ID9654_17 --> 0 - 1 Original Alignment CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTG---TGTGCAGTCCTGg agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGggtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca Alignment from CESAR CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTG---TGTGCAGTCCTGg agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGggtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca Alignment from Spaln_aa2Genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTG---GTGTGTGCAGTCCTGG agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGGgtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca Alignment from Spaln_nt2Genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTG---GTGTGTGCAGTCCTGG agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGGgtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca Alignment from Pairagon CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCC---TGGTGTGTGCAGTCCTGG agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGGgtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca Alignment from Exonerate_protein2genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTG---GTGTGTGCAGTCCTGG agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGGgtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca Alignment from Exonerate_coding2genome CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTG---GTGTGTGCAGTCCTGG agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGGgtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca Alignment from GeneWise CCCATGAGACACAGGAAGAAGGCTGCTGACAAGAACCTTCCCTGCCGGCCCCTGGTG---TGTGCAGTCCTGG agctccaatctctggaaatacctctctatctgttcttctctattccgcagCCCATGAGACATAGGAAGAAGGCAGCTGATAAGAACATCCCCTGCCGACCCCTGGTGGTGTGTGCAGTCCTGGgtgagtaaggaatgcgaatgactgtcacgatagaggtttcttcaatgaca #### 9130011E15Rik_ID9656_15 --> 2 - 0 Original Alignment atGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagatGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc Alignment from CESAR atGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagatGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc Alignment from Spaln_aa2Genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc Alignment from Spaln_nt2Genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc Alignment from Pairagon ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc Alignment from Exonerate_protein2genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc Alignment from Exonerate_coding2genome ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc Alignment from GeneWise ATGAACACAGGCTTCACAGTGGCAAGCTCTGTCTGATTATCCTCACATGCATTGCAGAG gtggtttaggttaaacgctcgagaattttgtcgcctgtcttctgatttagATGAACACAGGCTCCACAGTGGCAAGCTCTGTCTAATCATCCTCACATGCATTGCAGGGgtaagtctgtgatggttgtgtgagtgggcagtgcttagagttgtctctcc #### 9130011E15Rik_ID9666_11 --> 0 - 2 Original Alignment GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTAcagtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc Alignment from CESAR GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTAca ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTAcagtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc Alignment from Spaln_aa2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc Alignment from Spaln_nt2Genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc Alignment from Pairagon GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc Alignment from Exonerate_protein2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc Alignment from Exonerate_coding2genome GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc Alignment from GeneWise GTGGGCAGCATGTTCATAGCAGACGCCCATGAGAAACTCTCAGTACA ctggaactgtcctcttggatgatccctgtataagagtatcttgtcattagGTGGGCAGCATGTTCATAGCAGATGCCCATGAGAAACTCTCAGTACAgtgagccattgggtgtcatttgtgtggtcttcagtttgaaagaaagactc #### 9130011E15Rik_ID9669_9 --> 0 - 2 Original Alignment GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACag caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATaggtattttttccacaatagttaagaatatgtgagctcattagaacttagag Alignment from CESAR GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACag caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATaggtattttttccacaatagttaagaatatgtgagctcattagaacttagag Alignment from Spaln_aa2Genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATAGgtattttttccacaatagttaagaatatgtgagctcattagaacttagag Alignment from Spaln_nt2Genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATAGgtattttttccacaatagttaagaatatgtgagctcattagaacttagag Alignment from Pairagon GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATAGgtattttttccacaatagttaagaatatgtgagctcattagaacttagag Alignment from Exonerate_protein2genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATAGgtattttttccacaatagttaagaatatgtgagctcattagaacttagag Alignment from Exonerate_coding2genome GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATAGgtattttttccacaatagttaagaatatgtgagctcattagaacttagag Alignment from GeneWise GGAATGGGGCTTGTGATCACTCAGGCTTTATCTGAGTACAACAG caggaagtcaccctttctttagctcagactttctttcaatgtttttctagGGAATGGGACTTGTGATCACTCAGTCTTTGTCTGAGTATAATAGgtattttttccacaatagttaagaatatgtgagctcattagaacttagag #### 9130011E15Rik_ID9674_7 --> 0 - 0 Original Alignment ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca Alignment from CESAR ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca Alignment from Spaln_aa2Genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca Alignment from Spaln_nt2Genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca Alignment from Pairagon ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca Alignment from Exonerate_protein2genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca Alignment from Exonerate_coding2genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca Alignment from GeneWise ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG aaccatcccagaagcaaaagcttgggtggaggcatagcatatcctgacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtgagctgcacatgattgctcctagccacaatatgtcatggacttaggca #### 9130011E15Rik_ID9676_5 --> 0 - 0 Original Alignment AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat Alignment from CESAR AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat Alignment from Spaln_aa2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat Alignment from Spaln_nt2Genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat Alignment from Pairagon AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat Alignment from Exonerate_protein2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat Alignment from Exonerate_coding2genome AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat Alignment from GeneWise AACTTGATGGAGAGTTTGGATTCATTACTTTGTGCAGAAGGTTCTGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTGGTGACT ggttctaggtttgttgatttgctctagacaaagctttcatctcattctagAACCTGATGGAAAGTTTGGATTCATTACTTTGTGCAGAAGGTTCAGAAAGTCTGAAGAGTTTATGTCTGAAACTTCTTCTTTGCTTAGTAACTgtaagggttgttgtgcgttaagaaagggaactcatccttgctaaattaat #### 9130011E15Rik_ID9679_2 --> 0 - 0 Original Alignment ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc Alignment from CESAR ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc Alignment from Spaln_aa2Genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc Alignment from Spaln_nt2Genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc Alignment from Pairagon ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc Alignment from Exonerate_protein2genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc Alignment from Exonerate_coding2genome ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc Alignment from GeneWise ACGGAGGACCCCAGTAAGTGTAGTCCACGGTTTTGGGAGGAACTCTTCCTCATGAAG ttatatctaaaagataattatctaaaggtggttttgtttttgtttcacagACAGAGGACCCCAGCAAGTGTAGTCCACGGTTTTGGGAGGAACTATTCCTCATGAAGgtagccacaaatagcctgaactctattttatggcggatggctaagcatgc #### A1cf_ID6649_9 --> 0 - 2 Original Alignment ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAat ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCatgtatataccctccccagactgtccataagttgtattttaatattgtgcag Alignment from CESAR ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAat ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCatgtatataccctccccagactgtccataagttgtattttaatattgtgcag Alignment from Spaln_aa2Genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCATgtatataccctccccagactgtccataagttgtattttaatattgtgcag Alignment from Spaln_nt2Genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCATgtatataccctccccagactgtccataagttgtattttaatattgtgcag Alignment from Pairagon ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCATgtatataccctccccagactgtccataagttgtattttaatattgtgcag Alignment from Exonerate_protein2genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCATgtatataccctccccagactgtccataagttgtattttaatattgtgcag Alignment from Exonerate_coding2genome ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCATgtatataccctccccagactgtccataagttgtattttaatattgtgcag Alignment from GeneWise ATATTAGAAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAAT ttcgtgcacgtgtgatatttgaaggaggtgtttgtggcttttgagggtagATATTAAAGGAAATTTGTCAAAAAAATAACTGGGGGCAGCCAGTATACCAATTGCACTCTGCCATAGGACAAGATCAAAGACAGTTATTCCTCTACAAAGTAACTATACCAGCCCTGGCCAGCCAGAATCCTGCCATgtatataccctccccagactgtccataagttgtattttaatattgtgcag #### A630007B06Rik_ID12186_11 --> 0 - 1 Original Alignment GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAggtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag Alignment from CESAR GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAg aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAggtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag Alignment from Spaln_aa2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAGgtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag Alignment from Spaln_nt2Genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAGgtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag Alignment from Pairagon GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAGgtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag Alignment from Exonerate_protein2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAGgtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag Alignment from Exonerate_coding2genome GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAGgtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag Alignment from GeneWise GAGAGCAAGTTGCTCAAAGAGGAAGAGCTTCGAAAAGAGGAAGTACAGACTCTGCAAGCTGAGCTTTCTGCTGCGCAGACCGAAGTCAAAGCCTTGAGTACCCAGGTGGAAGAGCTGAAAGATGAGTTAGTGACGCAGAGGCGCAAACACGCCTCTAACGTCAAGGACCTCAGCAAGCAGCTTCAGCAAG aaatggtgatacacggttaacttgccaaacttctccccctttcccttcagGAGAGCGAGTTGCCCAAAGAGGAAGAGCTTCAAAAAGAGGAAGTTCAAACTCTGCAAGCTGAGCTTTCTGCAGCACAGACTGAAGTCAAAGCCCTGAGTACCCAGGTGGAAGAGTTGAAAGATGAGTTAGTCACACAAAGGCACAAACATGCCTCAAATGTAAAGGACCTCAGCAAGCAGCTTCAGCAAGgtaaagctttgttggctgtcttcttgagagtctggttagctaggtaatag #### A630007B06Rik_ID12191_6 --> 0 - 0 Original Alignment GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg Alignment from CESAR GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg Alignment from Spaln_aa2Genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg Alignment from Spaln_nt2Genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg Alignment from Pairagon GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg Alignment from Exonerate_protein2genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg Alignment from Exonerate_coding2genome GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg Alignment from GeneWise GAAACCAAAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGGAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGACCTATCAG acttcaccttatggctactacccagacacagtccttttctatctctctagGAAACCACAGATAAACTCAAAGAAACAACTACAAAACTAACCCAGGCAAAGGAGAAAGCTGAGCAAATCCGGCAGAACTGTCAGGACATGATAAAGCCCTATCAGgtaagcttccttggtgggaagttgttgaaaactgaacctctatgcccatg #### A630007B06Rik_ID12192_5 --> 0 - 0 Original Alignment GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc Alignment from CESAR GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc Alignment from Spaln_aa2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAG--- ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGgcacagaacaaattaaaggactcccataaggtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc Alignment from Spaln_nt2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAA---------GGACTCCCATAAGgtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc Alignment from Pairagon GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAA---------GGACTCCCATAAGgtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc Alignment from Exonerate_protein2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc Alignment from Exonerate_coding2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc Alignment from GeneWise GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG ctcttcagagattactctgaaagttgttgtcaaatcttttcctcttatagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAGGAGATGAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtgagttaggtagtcgcaagtacaaagaccagcagcttctgcagaacccc #### A630007B06Rik_ID12194_3 --> 0 - 0 Original Alignment TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTC---ACAGCTAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct Alignment from CESAR TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTCACA---GCTAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct Alignment from Spaln_aa2Genome TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTC---ACAGCTAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct Alignment from Spaln_nt2Genome TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTCACAGC---TAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct Alignment from Pairagon TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTCACA---GCTAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct Alignment from Exonerate_protein2genome TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTC---ACAGCTAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct Alignment from Exonerate_coding2genome TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTC---ACAGCTAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct Alignment from GeneWise TTAGAATTAAGAATAGAGGAACTGAATAAAGAAATTAAAGCTTCCAAAGATCAGCTAGTCGCACAGGATGTCACA---GCTAAAAATGCAATTCAGCAAATCCATAAAGAGATGGCCCAGCGGATGGACCAG taaccttgctgtagctttgaaatctagcggtgtctcctcctacattctagTTAGGATTAAGAATAGAGGAACTGAACAAGGAAGTGAAAGCCTCCAAGGATCAGCTAGTAGCTCAAGGGGTTACAACCACTAAAAATGCAGTCCAGCAAATTCATAAAGAGATGGCTCAGCGGATGGATCAGgtaaagtgaccactataactctgacccttaatgtctctagtttatcacct #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagaaTCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGagtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagaaTCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGagtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCC---TGAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCC---TGAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca #### AI846148_ID2144_2 --> 2 - 1 Original Alignment taACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAg atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacagtaACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGggtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa Alignment from CESAR taACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAg atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacagtaACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGggtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa Alignment from Spaln_aa2Genome TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGGgtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa Alignment from Spaln_nt2Genome TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGGgtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa Alignment from Pairagon TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCT---GGAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGGgtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa Alignment from Exonerate_protein2genome TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGGgtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa Alignment from Exonerate_coding2genome GTAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacaGTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGGgtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa Alignment from GeneWise TAACCCAACAGGAAAAGACGCCGCCACCTCGGCCTAACCTGCTGGAAGCAGGTGTTGAAGGCTGTGAGGAGCTCAAGCAGCAAGTGTCATGGGAGCAGGAGTTCCTGGTGGGGAACAGCCCAGGAGGCAGTGGACGGGCGCTGTGCATGGTGTGTGGGGCTGAGATCCGGTCCCCATCAGCAGACACTGCTCGCGCACACATCCTG---GAGCAGCATCCTCACACCCTGGACCTGAGCCCCTCTGAGAAGAGCAACATCTTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGACATCCAAGCTGACCAGCCATCCCTGCCCAGCCTAG atgctgttcataccacagtcgaaaatttcttgataaatttcccttcacagTAACCCAACAAGAGAAAACACCCCCACCTCAACCTAACCTATTGGACGCAGGAGTTGATGGCTGTGAGGAGTTCAAGCAGCAAGTGTCATGGGAGCAGGCGTTGCTTGTAGGGAATAGCCCTGGAGGAAGTGGACAGGCACTGTCCATGGTGTGTGGTACTGAAATCCGGTCACCGTCTGCAGACACTGCTCAAGCACATATCCTCCCAGAGCAGCATCCTCACACCCTGGATTTGAGCCCCTCAGAGAAAAGCAACATTCTAGAAGCCTGGAGTGAAGGGGTTGCCCTTCTGCAAGATATCCAGGCTGACCAGCCGTCCCTGCCTGGCCTGGgtatgtagggggagggctggtagaggactgtgggagtagagagagctgaa #### Abcc2_ID8818_2 --> 0 - 0 Original Alignment AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt Alignment from CESAR AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt Alignment from Spaln_aa2Genome AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt Alignment from Spaln_nt2Genome AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt Alignment from Pairagon AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt Alignment from Exonerate_protein2genome AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt Alignment from Exonerate_coding2genome AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt Alignment from GeneWise AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG gaaatccgatttacaatgtgaacccatctttctttttttctttttaatagAATCTCTCGTTATTAAAATGTCCAGAAGCTGACCTACCACGTTGTTCTAAACAGACTGTTTTAGTCTGGATCCCACTGGGCTTTCTTTGGCTCTTGGCACCTTGGCAACTTTACAGAATATACAGGTCTAGATCCAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAGGAGgtgagatgaaatacagtctctagccaccttgagccctactgaatctctgt #### Abcc2_ID8822_6 --> 0 - 2 Original Alignment GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACag tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACaggtgagaagtggttggatgggagtatttttttttctaatatccatgtacta Alignment from CESAR GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACag tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACaggtgagaagtggttggatgggagtatttttttttctaatatccatgtacta Alignment from Spaln_aa2Genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtgagaagtggttggatgggagtatttttttttctaatatccatgtacta Alignment from Spaln_nt2Genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtgagaagtggttggatgggagtatttttttttctaatatccatgtacta Alignment from Pairagon GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtgagaagtggttggatgggagtatttttttttctaatatccatgtacta Alignment from Exonerate_protein2genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtgagaagtggttggatgggagtatttttttttctaatatccatgtacta Alignment from Exonerate_coding2genome GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtgagaagtggttggatgggagtatttttttttctaatatccatgtacta Alignment from GeneWise GCCCCATCAGCTACAGCTTCATTTCTGAGTAGCGTTACGTTTAGTTGGTATGACAG tccaggagccccatgagtcacctccaacctaatctcagtcccacccctagGCACCATCAGCCACAGCTTCATTTCTGAGTAGTGTTACATTTAGTTGGTATGACAGgtgagaagtggttggatgggagtatttttttttctaatatccatgtacta #### Abcc2_ID8825_9 --> 1 - 0 Original Alignment aTTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacaggTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGA------ATCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag Alignment from CESAR aTTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacaggTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGA------ATCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag Alignment from Spaln_aa2Genome ATTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacagGTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGA------ATCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag Alignment from Spaln_nt2Genome ATTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacagGTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGAA------TCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag Alignment from Pairagon ATTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacagGTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGAA------TCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag Alignment from Exonerate_protein2genome ATTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacagGTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGA------ATCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag Alignment from Exonerate_coding2genome ATTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacagGTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGA------ATCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag Alignment from GeneWise ATTTCTCATTGGCTTCGTGAAAGACCCTGACTCATATCCGTGGGTTGGATATATCTATGCAATCCTAATGTTCTCTGTGACTCTCATCCAGTCTTTCTTCCTTCAGTGTTATTTTCAATTTTGTTTTGTGTTGGGAATGACTGTACGGACAACCATCATAGCTTCCGTATATAAGAAG ggaccttggtgccaatgagtatgttctaccacctctgccttggcccacagGTTTCTCATTGGCTTTGTGAAAGACTCTGACTCATACTCGTGGGTTGGCTATATCTATGCAATCCTCATGTTCACTGTGAGTCTCATCCAGTCATTCTTCCTACAGTGTCATTTTCAATTTTGCTTTGTGTTGGGA------ATCCGGACAACTATCATCGCCTCTGTATACAAGAAGgtaaggggtgatgattgtgccttagttgaaacgactgcaaatccataaag #### Abcc2_ID8832_16 --> 1 - 0 Original Alignment tGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagtGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga Alignment from CESAR tGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagtGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga Alignment from Spaln_aa2Genome TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagTGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga Alignment from Spaln_nt2Genome TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagTGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga Alignment from Pairagon TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagTGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga Alignment from Exonerate_protein2genome TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagTGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga Alignment from Exonerate_coding2genome TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagTGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga Alignment from GeneWise TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccacctacatccttcgctgcctccccccactttgcagTGTGAACTTAGATATAAAACCAGGTGAGCTCGTGGCTGTGGTGGGCACTGTTGGGTCTGGAAAGTCCTCCTTGATTTCAGCCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaagtggtagaaaatgaagacttctaatcgccctgaatgaagctttaga #### Abcc2_ID8834_18 --> 0 - 0 Original Alignment GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta Alignment from CESAR GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta Alignment from Spaln_aa2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta Alignment from Spaln_nt2Genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta Alignment from Pairagon GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta Alignment from Exonerate_protein2genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta Alignment from Exonerate_coding2genome GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta Alignment from GeneWise GGTATAAATCTCAGTGGCGGTCAGAAGCATCGAGTCAGCCTGGCCCGGGCCACCTATCAAGATGCAGACATCTATATTCTAGACGACCCCCTGTCGGCTGTGGACACTCACGTGGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGCGGCAAG aaaaacaggtcatgggagtgttggatcattcttttttaaatttgtaacagGGTATAAATCTCAGTGGTGGTCAAAAACACCAAGTCAGCCTGGCCCGGGGTGCATATCAAGATGCCGACATCTATATTCTAGAGGATCCACTCTCTGCTGTGGACACTCATGTAGGAAAACACATTTTCAACAAGGTTGTGGGCCCCAATGGCCTGCTGAGTGGCAAGgtatttgtgattgatatttgcatgtgtgtgtgtctgtctctgtgggtgta #### Abcc2_ID8835_19 --> 0 - 1 Original Alignment ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAg caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGAG---ATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATTCT------GAAGGGGAGGCTACAggtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat Alignment from CESAR ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAg caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGAG---ATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATTCT------GAAGGGGAGGCTACAggtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat Alignment from Spaln_aa2Genome ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGAG---ATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATTCT------GAAGGGGAGGCTACAGgtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat Alignment from Spaln_nt2Genome ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGA---GATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATT------CTGAAGGGGAGGCTACAGgtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat Alignment from Pairagon ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGA---GATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATT------CTGAAGGGGAGGCTACAGgtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat Alignment from Exonerate_protein2genome ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGAG---ATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATTCT------GAAGGGGAGGCTACAGgtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat Alignment from Exonerate_coding2genome ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGAG---ATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATTCT------GAAGGGGAGGCTACAGgtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat Alignment from GeneWise ACTCGGATCTTGGTTACACATGGCATTCACTTCCTTCCCCAAGTGGATGAGATTGTCGTTCTGGGGAAAGGCACCATCTTAGAGAAGGGATCCTATAGTGACCTGATGGACAAGAAAGGAGTGTTCGCTAAGAACTGGAAGACATTCATGAAGCATTCGGGACCTGAAGGAGAGGCTACAG caactgtgtgggtgtgagggagaaaccaattttgcatttttgccatatagACGCAGATCTTGGTTACCCACAGTGTTCACTTCCTTCCCCAAGTGGATGACATTGTGGTTCTGGGAAAAGGCACCATATTAGAGAAAGGGTCCTACAGTGAG---ATGGGCAAGAAAGGAGTGATTGCTAAGAACTGGAAGACTTTCATGAAACATTCT------GAAGGGGAGGCTACAGgtgaggagcaggctgagaatgcagcagtacttggggtctaaatggggaat #### Abcc2_ID8836_20 --> 2 - 2 Original Alignment tcGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCag ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagttGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTaggtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt Alignment from CESAR tcGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCag ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagttGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTaggtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt Alignment from Spaln_aa2Genome TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTAGgtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt Alignment from Spaln_nt2Genome TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTAGgtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt Alignment from Pairagon TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTAGgtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt Alignment from Exonerate_protein2genome TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTAGgtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt Alignment from Exonerate_coding2genome TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTAGgtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt Alignment from GeneWise TCGATAACGACAGTGAGGAAGAGGATGGTGACTGTGGGCTGATCCCAACTGTGGAGGAAATTCCTGACGATGCAGCTTCCTTGACCATGAGAAGGGAGAACAGCCTTCGCCGAACACTGAGCCGCAG ctattgttacaactattttactatcccctcatcctgtcttatgtatcaagTTGATAATGACAGTGAAGAAGAGGATGGTGATTGTGGGCTCATTCCAACTGTGGAGGAAATTCCTGATGATGCAGCTTCTTTGACCATGAGAAGGGAGAACAGCCTACGACAAACACTGAGCCGTAGgtacgataaaggtacagttgaaaattgtttcatactttttttgatctttt #### Acsl5_ID11597_2 --> 0 - 1 Original Alignment GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTggtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt Alignment from CESAR GGAGGAGCA------CGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTg tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTggtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt Alignment from Spaln_aa2Genome GGAGGA------GCACGGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt Alignment from Spaln_nt2Genome GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt Alignment from Pairagon GGAGGAGCAC------GGAGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt Alignment from Exonerate_protein2genome GGAGGAGCACGG------AGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt Alignment from Exonerate_coding2genome GGAGGAGCACGG------AGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt Alignment from GeneWise GGAGGAGCACGG------AGGGGCGCTTTCCAGAAGAACAATGACCTAATCCTTTATTACTTCTCAGACGCCAAGACGTTGTATGAAAATTTCCAAAGAGGACTTGCTGTGTCTG tttcaggtgtcagctgctgtaaaaactctgcctctgtctctccatcgcagGGGGGAGCATCTGCAGGGAGGGGTGCTGTCAAGGAGAACAACGACCTAATCCTCTATTATTTCTCAGATTCCAAAACACTGTATGAAAATGTCCAGAGAGGACTTGCTGTGTCTGgtacagtttttcacttggtctattatagtcagttatgctgcaccatgagt #### Acsl5_ID11598_3 --> 2 - 0 Original Alignment acAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagacAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct Alignment from CESAR acAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagacAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct Alignment from Spaln_aa2Genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagACAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct Alignment from Spaln_nt2Genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagACAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct Alignment from Pairagon ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagACAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct Alignment from Exonerate_protein2genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagACAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct Alignment from Exonerate_coding2genome ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagACAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct Alignment from GeneWise ACAATGGGCCTTGCTTGGGATACAGAAAGCCAAACCAGCCCTACAAATGGATCTCCTACAAACAG tctttcgcctaacataatcagccagtcaagtctgtaacttttccttgtagACAATGGGCCTTGCTTGGGATATAGAAAGCCCAACCAGCCCTATAAATGGATCTCCTATAAACAGgtgagtctataaccttatgctctgcctatacaccatgagccgtcttagct #### Acsl5_ID11605_10 --> 0 - 0 Original Alignment CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa Alignment from CESAR CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa Alignment from Spaln_aa2Genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa Alignment from Spaln_nt2Genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa Alignment from Pairagon CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa Alignment from Exonerate_protein2genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa Alignment from Exonerate_coding2genome CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa Alignment from GeneWise CCTATCTTCCAGCCCACCTCTGATGATGTGACCATATCCTACCTTCCCTTGGCTCATATGTTTGAGAGGCTTGTCCAG gaactaccggacaccaaactactgccatcagtcttgtcctgtctctccagCCTATCTTTCAGTCCACCTCCGATGATGTGACGATATCCTACCTACCTTTAGCTCATATGTTTGAGAGACTTGTTCAAgtaatcagcttgaagcaggtagctattttgcaaccctacagtaggagtaa #### Acsl5_ID11606_11 --> 0 - 0 Original Alignment GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct Alignment from CESAR GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct Alignment from Spaln_aa2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct Alignment from Spaln_nt2Genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct Alignment from Pairagon GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct Alignment from Exonerate_protein2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct Alignment from Exonerate_coding2genome GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct Alignment from GeneWise GGTATCTTATTTTCCTGTGGAGGCAAAATTGGGTTCTTCCAAGGAGATATCCGGTTGCTACCTGATGACATGAAGGCTTTGAAACCCACAGTGTTTCCTACAGTGCCTCGACTCCTTAACAGGGTCTATGATAAG ctgtctcccgagatccaagccactgggccctctgaaatgtctgtatgcagGCTGTTTTTTTTTCCTGTGGGGGCAAAATTGGGTTCTTCCGAGGTGATATCCGGTTGCTTCCTGATGATATGAAGGCTTCAGAACCTACAGTGTATCCTGCATTGCCTCGACTCCTAAACAGGGTCTATGAAAAGgtatgtaacttgcttctgcttactatcatcccgaaaaatttggtggggct #### Acsl5_ID11613_18 --> 0 - 0 Original Alignment TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct Alignment from CESAR TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct Alignment from Spaln_aa2Genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct Alignment from Spaln_nt2Genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct Alignment from Pairagon TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct Alignment from Exonerate_protein2genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct Alignment from Exonerate_coding2genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct Alignment from GeneWise TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtgggccctgtctaaaacctcgctcctgtctcttagTCATATATTATCGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAGCCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtagggacagttcaaaatgctttagcatctgtcctagctggggcagttct #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag #### Acta2_ID6908_6 --> 2 - 1 Original Alignment ccGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTg gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagccAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTG---GTTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTggtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from CESAR ccGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTg gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagccAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTG---GTTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTggtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Spaln_aa2Genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagCCAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTG---GTTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Spaln_nt2Genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagCCAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTGG---TTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Pairagon CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagCCAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTGG---TTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Exonerate_protein2genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagCCAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTG---GTTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from Exonerate_coding2genome CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagCCAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTG---GTTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta Alignment from GeneWise CCGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACGGCCGCCTCCTCTTCCTCCCTGGAGAAGAGCTACGAACTGCCTGACGGGCAGGTGATCACCATTGGAAACGAACGCTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCTTTCATTG gaggcttgtggtaggatacatgtctactcccccttttttttctcttccagCCAAATGTGAGGTAGTCCGTGACATCAAAGAGAAGTTGTGTTATGTGGCTCTG---GTTGAAAATGAGATGGCCACAGCGGCCTCATCTTCCTCCCTGGAAAAGAGCTACAAACTCCCTGATGGGCAGGTGATCACCATCGGAAATGAGCACTTCCGCTGCCCAGAGACTCTCTTCCAGCCATCATTCATTGgtactcaattaagggtgatgttattttgttctgtaccaagaacaagccta #### Acta2_ID6909_5 --> 2 - 1 Original Alignment gtATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTg gggatcccctgccactataacggcttccatcttgttctctctccttccaggcATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTggtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac Alignment from CESAR gtATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTg gggatcccctgccactataacggcttccatcttgttctctctccttccaggcATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTggtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac Alignment from Spaln_aa2Genome GTATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTG gggatcccctgccactataacggcttccatcttgttctctctccttccagGCATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTGgtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac Alignment from Spaln_nt2Genome GTATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTG gggatcccctgccactataacggcttccatcttgttctctctccttccagGCATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTGgtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac Alignment from Pairagon GTATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTG gggatcccctgccactataacggcttccatcttgttctctctccttccagGCATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTGgtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac Alignment from Exonerate_protein2genome GTATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTG gggatcccctgccactataacggcttccatcttgttctctctccttccagGCATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTGgtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac Alignment from Exonerate_coding2genome GTATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTG gggatcccctgccactataacggcttccatcttgttctctctccttccagGCATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTGgtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac Alignment from GeneWise GTATTGTGCTGGACTCTGGAGATGGTGTGACTCACAACGTGCCTATCTATGAGGGCTATGCCCTGCCTCATGCCATCATGCGTCTGGACTTGGCTGGCCGAGATCTCACCGACTACCTCATGAAGATCCTGACTGAGCGTGGCTATTCCTTCGTGACTACTG gggatcccctgccactataacggcttccatcttgttctctctccttccagGCATTATACTGGACTCTGGAGATGGGGTGACTCATAATGTGCCTATCTATGAGGGCTATGCCCTGCCACATGCTATCATGCGCCTAGACTTGGCTGGCCGGGATCTCACTGACCACCTCATGAAGATTCTGACTGAGCGTGGTTATTCCTACGTGACTACTGgtacttctcatggggggggatgaccaccccctgggaagttgaaaccagac #### Actn3_ID691_19 --> 0 - 0 Original Alignment GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagagacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from CESAR GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Spaln_aa2Genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagagacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Spaln_nt2Genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagagacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Pairagon GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagagacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Exonerate_protein2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagagacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Exonerate_coding2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagagacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from GeneWise GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagagacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from CESAR GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Spaln_aa2Genome GTCAGAAAGCTGGTACCC---AGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Spaln_nt2Genome GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Pairagon GTCAGAAA-------------GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGC----------CCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from GeneWise GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat #### Actn3_ID697_13 --> 1 - 0 Original Alignment tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagtGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga Alignment from CESAR tGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagtGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga Alignment from Spaln_aa2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagTGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga Alignment from Spaln_nt2Genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagTGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga Alignment from Pairagon TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagTGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga Alignment from Exonerate_protein2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagTGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga Alignment from Exonerate_coding2genome TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagTGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga Alignment from GeneWise TGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAAGCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAG ataacactgccacataccttgggtctgcatgttttgctctttgtctgcagTGAGCTTGACTACCATGAGGCAACTTCTGTGAACAGTCGGTGCCAAGCTATCTCTGACCAGTGGGATAACCTGGGTACACTTACCCAGAAGAGGAGAGATGCATTAGAGgttagtggtaggccaggaaggaggtaaggtcgataaggtcagcagtctga #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagcTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag Alignment from CESAR cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagcTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagCTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagCTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag Alignment from Pairagon CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagCTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagCTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagCTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGCAAG gatacactcctactgtagactgtagccttgtctctcgtcttccttgccagCTGGAAGGATGGGCTGGCCCTTTGTGCTCTCACCCACCGGCACCGTCCAGATCTTATTGACTACGCCAAGCTTTACAAGgtaagttgctacaactcatatctctatagccacaactcatatctctatag #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG gcaaagtgcatcagtcaggccagatcataagtgtatctttctgcttttagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc Alignment from GeneWise -------------------------------------------------GAGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG GCAAAGTGCATCAGTCAGGCCAGATCATAAGTGTATCTTTCTGCTTTTAGAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtgaggccggtagcctcaagtgaatgcaaataaagtgtttgctggcaccc #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAggtaaggtgatgcaaagtgcatcagtcaggccagatcatgtgctgagctac Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAggtaaggtgatgcaaagtgcatcagtcaggccagatcataagtgtatcttt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgtgctgagctac Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgtgctgagctac Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgtgctgagctac Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgtgctgagctac Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaaggtgatgcaaagtgcatcagtcaggccagatcatgtgctgagctac Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAA--------------------------------------------------- aaaggccagatgctggagcgaggtctggctttgctttatgtatgtttcagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATCTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGGTAAGGTGATGCAAAGTGCATCAGTCAGGCCAGATCATGTGCTGAGCTAC #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tatacttcaactcatgaccttcaacatggccactgttgctctctttacaggtGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tatacttcaactcatgaccttcaacatggccactgttgctctctttacaggtGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tatacttcaactcatgaccttcaacatggccactgttgctctctttacagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCTAATGTAAATAATGCCCTAGACTTCATAGCTACCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaatgggtggttaaaagacacaggcagtggagaggcaagatgttactt #### Actn3_ID708_2 --> 0 - 1 Original Alignment ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCg cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTggtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa Alignment from CESAR ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCg cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTggtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa Alignment from Spaln_aa2Genome ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTGgtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa Alignment from Spaln_nt2Genome ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTGgtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa Alignment from Pairagon ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTGgtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa Alignment from Exonerate_protein2genome ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTGgtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa Alignment from Exonerate_coding2genome ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTGgtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa Alignment from GeneWise ACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAGGACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCG cctggctttgtcactagttccaaggtttgcagccttttctcttctttcagACCTTTACTGCCTGGTGTAACTCACATCTGCGGAAGGCTGGCACACAAATTGAGAACATTGAAGAAGACTTCCGTACTGGCCTGAAGCTCATGCTGCTCCTTGAGGTCATTTCTGgtaagaacggttgtaaatcatgtactcttgacaagtcttgaattagggaa #### Actr1a_ID9871_9 --> 2 - 0 Original Alignment gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcaggtTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt Alignment from CESAR gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcaggtTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt Alignment from Spaln_aa2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcagGTTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt Alignment from Spaln_nt2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcagGTTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt Alignment from Pairagon GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcagGTTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt Alignment from Exonerate_protein2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcagGTTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt Alignment from Exonerate_coding2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcagGTTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt Alignment from GeneWise GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctggtcatcagccttgttcttaccccaccccctgtctcctcagGTTTTGGAGACAAACTACTGAGTGAAGTGAAGAAAGTTGCTCTGAAAGATGTGAAGATAAGGgtatcctgtactgggggttgaacttgttggttccacccacttgtctttgt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcaggcATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatcaggaagcaacagggatgagcccctcccaccctcccctgcagGCATGGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtaacggttgtgggagtcaggtaggcgtactgtgaacacccaactgaacc #### Add3_ID11212_4 --> 0 - 0 Original Alignment GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt Alignment from CESAR GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt Alignment from Spaln_aa2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt Alignment from Spaln_nt2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCC---TGGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt Alignment from Pairagon GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt Alignment from Exonerate_protein2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt Alignment from Exonerate_coding2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt Alignment from GeneWise GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG taatgaggcacaagtgaatgattctaggtgctgagtctcttctcctgcagGTACGAATCAGTAAGGAGCAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCCGAAACAACAGCCTCCTCTTCAgtgagtttattatttccatgttacttaccatgcatacccttatcacacgt #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGatgtacctactggactggtaagggtggccagggaaggagtcaggctttgcat Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGatgtacctactggactggtaagggtggccagggaaggagtcaggctttgcat Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGATgtacctactggactggtaagggtggccagggaaggagtcaggctttgcat Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGATgtacctactggactggtaagggtggccagggaaggagtcaggctttgcat Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGATgtacctactggactggtaagggtggccagggaaggagtcaggctttgcat Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGATgtacctactggactggtaagggtggccagggaaggagtcaggctttgcat Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGATgtacctactggactggtaagggtggccagggaaggagtcaggctttgcat Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGATGTACGCCATGAAG-- gcacaccagcatcactgtgagactagtgttctttaatttttgttgctaagCTGACCATGAATGATTTTAGTGTACATCAAATCATCGGACATGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAAGCGGATGTAGGCAAGATGTACCTACTGGACTGgtaagggtggccagggaaggagtcaggctttgcat #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_coding2genome atttactattccgttttctttgttcatagttttgtttttttttcccacagcccttttcacaaaacgctacagagcatgtgcaggcccaccttgtgaaaaagcaggtccctccagatctgtttcaagtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG ctgctctctaggcctgcagccaaacatatcctcttgtctgtctgttgcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAGCCTACGCCACGAAGCACCATGGTTAAGTTGCAGGCAGAGCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCCCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtgagcggactaatgcccaacctagcatttatagcctaacaaagctgaag #### Afap1l2_ID12260_4 --> 2 - 1 Original Alignment gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg caacttaccagtcacatggcacagtaaactcgctcccctctcatccccaggtTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAggttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat Alignment from CESAR gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg caacttaccagtcacatggcacagtaaactcgctcccctctcatccccaggtTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAggttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat Alignment from Spaln_aa2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG caacttaccagtcacatggcacagtaaactcgctcccctctcatccccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat Alignment from Spaln_nt2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG caacttaccagtcacatggcacagtaaactcgctcccctctcatccccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat Alignment from Pairagon GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG caacttaccagtcacatggcacagtaaactcgctcccctctcatccccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat Alignment from Exonerate_protein2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG caacttaccagtcacatggcacagtaaactcgctcccctctcatccccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat Alignment from Exonerate_coding2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG caacttaccagtcacatggcacagtaaactcgctcccctctcatccccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat Alignment from GeneWise GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG caacttaccagtcacatggcacagtaaactcgctcccctctcatccccagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAAGAAAACACAGCATCTCCAGACAAAGgttagtcgccctccatgctgcaaggatgatgaaggtttggcaccctccat #### Aldh18a1_ID7981_2 --> 2 - 0 Original Alignment atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagatCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc Alignment from CESAR atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagatCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc Alignment from Spaln_aa2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc Alignment from Spaln_nt2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc Alignment from Pairagon ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc Alignment from Exonerate_protein2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc Alignment from Exonerate_coding2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc Alignment from GeneWise ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaattcaatcttcgattctcctgataggataccctttctcttccagATCGTGTCCAGCCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGCGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGTAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCCTGGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtctgagtcatgtgaaataattgcaaaataattgcattttctaagttggc #### Aldh1a1_ID4795_8 --> 0 - 1 Original Alignment GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACt cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATtgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt Alignment from CESAR GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACt cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATtgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt Alignment from Spaln_aa2Genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATTgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt Alignment from Spaln_nt2Genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATTgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt Alignment from Pairagon GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATTgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt Alignment from Exonerate_protein2genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATTgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt Alignment from Exonerate_coding2genome GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATTgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt Alignment from GeneWise GTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCAGATGCCGACT cactgagccctgaccttggctgctgtgcaattgtattctctcccttgcagGTTGGCAAGATAATCAAGGAAGCTGCAGGGAAAAGTAATTTGAAGAGGGTCACCTTAGAGCTGGGGGGGAAGAGCCCTTGTATTGTGTTTGCAGATGCTGATTgtgtgtacaggtcccttgctatactttgataattttcctcctagtgtgtt #### Aldh3b1_ID202_5 --> 0 - 1 Original Alignment AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAg gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAggtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc Alignment from CESAR AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAg gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAggtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc Alignment from Spaln_aa2Genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAGgtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc Alignment from Spaln_nt2Genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAGgtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc Alignment from Pairagon AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAGgtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc Alignment from Exonerate_protein2genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAGgtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc Alignment from Exonerate_coding2genome AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAGgtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc Alignment from GeneWise AGCTGCTTTACTGTGGTACTGGGTGGGCGTCAGGAGACCGGGCAGCTGCTGGAACACAAGTTCGACTACATCTTCTTCACAG gccagaggccaggtctgaggacccttccgctctccttctcttctccccagAGCTGCTTTACTGTGGTACTGGGTGGCCACCAGGAAACTGGGCTGCTGCTTGAAGACAAGTTTGAATACATCTTCTTCACAGgtaagtctcttagatggagtcagtccccattagagtgatcctgtcccctc #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTG---CAGCATCTGGATCAGgtaggcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAggtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from CESAR CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTG---CAGCATCTGGATCAGgtatgcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAggtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Spaln_aa2Genome CTGCTGCC CCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTACTGCAgcatctggatcaggtaggcagtatcctttctttcatgtttagagC------------------TGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Spaln_nt2Genome CTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGATCAGGTAGGCAGTATCCTTTCTTTCATGTTTAGAG--CTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Pairagon CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGATCAGGTAGGCAGTATCCTTTCTTTCATGTTTAGAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Exonerate_protein2genome CACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG----AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTACTGCAGCATCTGGATCAGGTAGGCAGTATCCTTTCTTTCATGTTTAGAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from Exonerate_coding2genome CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTGC---AGCATCTGGATCAGgtaggcagtatcctttctttcatgtttagagC--TGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAGgtgcgtcctatggatttggaacctgcggtagagcagggcagcacacaagt Alignment from GeneWise CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG CTG---CAGCATCTGGATCAGgtaggcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAGTTTGACTATATCTTCTTTATAGGTGCgtcctatggatttggaacctgcggtagagcagggcagcacacaagt #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTggtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTggtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTATGAT---GATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcgtgctaggtgaacaggcactggccactctgccctgtagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACGGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCGGCTTTGCAAAATTCTATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGCGATGAGGGAGGGTGCTGTATTGgtaagtctcttgctatgtctgtggccccagcatagagcccatggcatcct #### Ankrd13d_ID459_14 --> 0 - 2 Original Alignment GTGACGGTGTGGGAAGCCCTGACCAACACACGGCCTGGCATTCACCCTCCTCCCCGAGTCACAGTGTTTGAAGAGCAGCTTCAGTTGGAGca ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctagGTAACAGTGTGGGAAGCCCTTACTAACACTCGGCCTGGCATTCACCTACCCCCT---GTCACAGTGTTTAAAGACCAACTTCAATTGGAAcagtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga Alignment from CESAR GTGACGGTGTGGGAAGCCCTGACCAACACACGGCCTGGCATTCACCCTCCTCCCCGAGTCACAGTGTTTGAAGAGCAGCTTCAGTTGGAGca ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctagGTAACAGTGTGGGAAGCCCTTACTAACACTCGGCCTGGCATTCACCTACCCCCT---GTCACAGTGTTTAAAGACCAACTTCAATTGGAAcagtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga Alignment from Spaln_aa2Genome GTGACGGTGTGGGAAGCCCTGACCAACACACGGCCTGGCATTCACCCTCCTCCCCGAGTCACAGTGTTTGAAGAGCAGCTTCAGTTGGAGCA ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctagGTAACAGTGTGGGAAGCCCTTACTAACACTCGGCCTGGCATTCACCTACCCCCT---GTCACAGTGTTTAAAGACCAACTTCAATTGGAACAgtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga Alignment from Spaln_nt2Genome GTGACGGTGTGGGAAGCCCTGACCAACACACGGCCTGGCATTCACCCTCCTCCCCGAGTCACAGTGTTTGAAGAGCAGCTTCAGTTGGAGCA ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctagGTAACAGTGTGGGAAGCCCTTACTAACACTCGGCCTGGCATTCAC---CTACCCCCTGTCACAGTGTTTAAAGACCAACTTCAATTGGAACAgtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga Alignment from Pairagon GTGACGGTGTGGGAAGCCCTGACCAACACACGGCCTGGCATTCACCCTCCTCCCCGAGTCACAGTGTTTGAAGAGCAGCTTCAGTTGGAGCA ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctagGTAACAGTGTGGGAAGCCCTTACTAACACTCGGCCTGGCATTCACCTACCCCCT---GTCACAGTGTTTAAAGACCAACTTCAATTGGAACAgtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga Alignment from Exonerate_protein2genome ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctaggtaacagtgtgggaagcccttactaacactcggcctggcattcacctaccccctgtcacagtgtttaaagaccaacttcaattggaacagtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga Alignment from Exonerate_coding2genome ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctaggtaacagtgtgggaagcccttactaacactcggcctggcattcacctaccccctgtcacagtgtttaaagaccaacttcaattggaacagtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga Alignment from GeneWise GTGACGGTGTGGGAAGCCCTGACCAACACACGGCCTGGCATTCACCCTCCTCCCCGAGTCACAGTGTTTGAAGAGCAGCTTCAGTTGGAGCA ccttagtgcctcaggcccaaggtggcagtcccttgtctctttttgtctagGTAACAGTGTGGGAAGCCCTTACTAACACTCGGCCTGGCATTCACCTACCCCCT---GTCACAGTGTTTAAAGACCAACTTCAATTGGAACAgtgagcaccaagaaggcatatcttagtctctaacaactttgacggtgaga #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Exonerate_protein2genome aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaattcccctctttcatgtgcacaatgcccgcaccacctttagtaacctttgtggctgtgatgaacctgtgagctcagtgtgtgtccccaactccagtctagcaatttctgcttcaggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Exonerate_coding2genome aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaattcccctctttcatgtgcacaatgcccgcaccacctttagtaacctttgtggctgtgatgaacctgtgagctcagtgtgtgtccccaactccagtctagcaatttctgcttcaggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagggGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagggGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc #### Ankrd13d_ID469_4 --> 0 - 1 Original Alignment GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGg tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGggtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg Alignment from CESAR GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGg tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGggtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg Alignment from Spaln_aa2Genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGGgtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg Alignment from Spaln_nt2Genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGGgtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg Alignment from Pairagon GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGGgtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg Alignment from Exonerate_protein2genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGGgtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg Alignment from Exonerate_coding2genome GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGGgtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg Alignment from GeneWise GCCCCTGATTTCTACGTGGAAATGAAATGGGAGTTCACTAGCTGGG tgttgtgagacctgacatggctcataatttctctctctctcattatctagGCCCCTGATTTCTATGTGGAAATGAAATGGGAGTTCACCAGCTGGGgtacgtaagtctcgggtgactgcagagctgtggattgatctatttgggtg #### Ankrd1_ID7097_6 --> 0 - 0 Original Alignment CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg Alignment from CESAR CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg Alignment from Spaln_aa2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg Alignment from Spaln_nt2Genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg Alignment from Pairagon CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg Alignment from Exonerate_protein2genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg Alignment from Exonerate_coding2genome CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg Alignment from GeneWise CTTGAATCCACAGCCATCCACTGGGCATGTCGTGGAGGAAACGCAGATGTCCTGAAACTGTTGCTGAACAAAGGAGCCAAAATCAGTGCCAGAGACAAG ccaagatgctacattacaccacttccctatttttaaccactgcttctcagCTGGAGTCCTCAGCCATCCACTGGGCATGTCGTGGAGAAAATGCAGATGTCCTAAAACTACTGCTGAACAAAGGAGCCAAAATAAGTGCCAGAGACAAGgtaagtcttggtccccccataggcttctgcctcattgagtgtgctttgtg #### Ankrd2_ID8370_4 --> 0 - 0 Original Alignment ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATAT------GATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat Alignment from CESAR ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATAT------GATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat Alignment from Spaln_aa2Genome ACCGGCCCTGTGAATGAGGAG---ACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATAT------GATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat Alignment from Spaln_nt2Genome ACCGGCCCTGTGAATGAGGA---GACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATA------TGATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat Alignment from Pairagon ACCGGCCCTGTGAATGAGGA---GACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATAT------GATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat Alignment from Exonerate_protein2genome ACCGGCCCTGTGAATGAGGAG---ACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATAT------GATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat Alignment from Exonerate_coding2genome ACCGGCCCTGTGAATGAGGAG---ACATTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATAT------GATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat Alignment from GeneWise ACCGGCCCTGTGAATGAGGAGACA---TTCCTGAAAGCTGCAGTGGAGGGGAAAATGAAAGTCATTGACAAGTACCTGGCGGACGGAGGTTCAGCGGACACCTGTGATGAG aaagtcccaaagctccaatcaaactttagtcctcttctttttcctcttagACTGGTGCTGTGAATGAGGCAATGATATTCCTAAAAGCTGCAGTAGAGGGGAAAATGAAAGTTATTGACAAATAT------GATGGAGGTTCAGCCGACACCTGCGATGAGgtaagttcctccacatattactgctccaattgtgggcttgtttgcacaat #### Anxa1_ID4759_11 --> 0 - 0 Original Alignment GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgtaatttaattagaaatgtgagttggttttacattattttttcgcagGGTGCTGGTACCAGCCATAAGGCTTTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagcatggcaccacacgagtcataagattggag Alignment from CESAR GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgtaatttaattagaaatgtgagttggttttacattattttttcgcagGGTGCTGGTACCAGCCATAAGGCTTTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagcatggcaccacacgagtcataagattggag Alignment from Spaln_aa2Genome GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgtaatttaattagaaatgtgagttggttttacattattttttcgcagGGTGCTGGTACCAGCCATAAGGCTTTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagcatggcaccacacgagtcataagattggag Alignment from Spaln_nt2Genome GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgtaatttaattagaaatgtgagttggttttacattattttttcgcagGGTGCTGGTACCAGCCATAAGGCTTTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagcatggcaccacacgagtcataagattggag Alignment from Pairagon GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgtaatttaattagaaatgtgagttggttttacattattttttcgcagGGTGCTGGTACCAGCCATAAGGCTTTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagcatggcaccacacgagtcataagattggag Alignment from Exonerate_protein2genome GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgtaatttaattagaaatgtgagttggttttacattattttttcgcagGGTGCTGGTACCAGCCATAAGGCTTTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagcatggcaccacacgagtcataagattggag Alignment from Exonerate_coding2genome attgtaatttaattagaaatgtgagttggttttacattattttttcgcagggtgctggtaccagccataaggctttgatcaggattatggtctcccgttcagaaattgacatgaatgaaataaaagtattttaccagaagaagtatggaatctctctttgccaagccatcctggtaaggcttatttcctatagcatggcaccacacgagtcataagattggag Alignment from GeneWise GGTGCCGGAACTCGCCATAAGGCATTGATCAGGATTATGGTCTCCCGTTCGGAAATTGACATGAATGAAATCAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTG attgtaatttaattagaaatgtgagttggttttacattattttttcgcagGGTGCTGGTACCAGCCATAAGGCTTTGATCAGGATTATGGTCTCCCGTTCAGAAATTGACATGAATGAAATAAAAGTATTTTACCAGAAGAAGTATGGAATCTCTCTTTGCCAAGCCATCCTGgtaaggcttatttcctatagcatggcaccacacgagtcataagattggag #### Anxa1_ID4760_10 --> 2 - 0 Original Alignment tgAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG catcgtccaagtttaaatatggcttttctgttttccttttggctttttagcaAAGTGTACCACCAGCACACCCGCCTTCTTTGCTGAGAAGTTGTATGAGGCTATGAAAgtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga Alignment from CESAR tgAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG catcgtccaagtttaaatatggcttttctgttttccttttggctttttagcaAAGTGTACCACCAGCACACCCGCCTTCTTTGCTGAGAAGTTGTATGAGGCTATGAAAgtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga Alignment from Spaln_aa2Genome TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG catcgtccaagtttaaatatggcttttctgttttccttttggctttttagCAAAGTGTACCACCAGCACACCCGCCTTCTTTGCTGAGAAGTTGTATGAGGCTATGAAAgtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga Alignment from Spaln_nt2Genome TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG catcgtccaagtttaaatatggcttttctgttttccttttggctttttagCAAAGTGTACCACCAGCACACCCGCCTTCTTTGCTGAGAAGTTGTATGAGGCTATGAAAgtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga Alignment from Pairagon TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG catcgtccaagtttaaatatggcttttctgttttccttttggctttttagCAAAGTGTACCACCAGCACACCCGCCTTCTTTGCTGAGAAGTTGTATGAGGCTATGAAAgtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga Alignment from Exonerate_protein2genome TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG catcgtccaagtttaaatatggcttttctgttttccttttggctttttagCAAAGTGTACCACCAGCACACCCGCCTTCTTTGCTGAGAAGTTGTATGAGGCTATGAAAgtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga Alignment from Exonerate_coding2genome catcgtccaagtttaaatatggcttttctgttttccttttggctttttagcaaagtgtaccaccagcacacccgccttctttgctgagaagttgtatgaggctatgaaagtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga Alignment from GeneWise TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG catcgtccaagtttaaatatggcttttctgttttccttttggctttttagCAAAGTGTACCACCAGCACACCCGCCTTCTTTGCTGAGAAGTTGTATGAGGCTATGAAAgtgagttcctacagaccacctacatttagatgcgatatgctgagtaagga #### Anxa1_ID4763_7 --> 0 - 0 Original Alignment GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt Alignment from CESAR GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt Alignment from Spaln_aa2Genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt Alignment from Spaln_nt2Genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt Alignment from Pairagon GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt Alignment from Exonerate_protein2genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt Alignment from Exonerate_coding2genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt Alignment from GeneWise GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG gacaaataacaaacagtcttgtatagcatgttgcctgactgtcttttcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagtaaaggcactcctacatctttatcccctatcattggaagcatgtt #### Anxa1_ID4765_5 --> 0 - 1 Original Alignment GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAg ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAggtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt Alignment from CESAR GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAg ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAggtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt Alignment from Spaln_aa2Genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt Alignment from Spaln_nt2Genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt Alignment from Pairagon GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt Alignment from Exonerate_protein2genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt Alignment from Exonerate_coding2genome GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt Alignment from GeneWise GGACTTGGAACAGATGAAGACACTCTCATTGAGATTTTGACAACAAGATCTAACGAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAG ccagactggtaaaaaaaatttccactataacttatctcttcacttttcagGGACTTGGTACAGACGAAGATACTCTCATTGAGATCTTGACAACAAGATCTATCAAACAAATCAGAGAGATTAATAGAGTCTACAGAGAAGgtaagactcaatatctgattgcctgagccgggcatgaaccaaacaaaatt #### Apba1_ID5230_3 --> 0 - 1 Original Alignment TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg attaatttgattgagctcttctacaatccagttttcactgtttctcttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggtacagccagaagagatgagccaggggatatttgcaggggttgtttatag Alignment from CESAR TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAg attaatttgattgagctcttctacaatccagttttcactgtttctcttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAggtacagccagaagagatgagccaggggatatttgcaggggttgtttatag Alignment from Spaln_aa2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG attaatttgattgagctcttctacaatccagttttcactgtttctcttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtacagccagaagagatgagccaggggatatttgcaggggttgtttatag Alignment from Spaln_nt2Genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG attaatttgattgagctcttctacaatccagttttcactgtttctcttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtacagccagaagagatgagccaggggatatttgcaggggttgtttatag Alignment from Pairagon TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG attaatttgattgagctcttctacaatccagttttcactgtttctcttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtacagccagaagagatgagccaggggatatttgcaggggttgtttatag Alignment from Exonerate_protein2genome TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG attaatttgattgagctcttctacaatccagttttcactgtttctcttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtacagccagaagagatgagccaggggatatttgcaggggttgtttatag Alignment from Exonerate_coding2genome attaatttgattgagctcttctacaatccagttttcactgtttctcttagtcaagaaaaagcttggcttcattcccaacctatgttgaaggtacagccagaagagatgagccaggggatatttgcaggggttgtttatag Alignment from GeneWise TCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTTGAAG attaatttgattgagctcttctacaatccagttttcactgtttctcttagTCAAGAAAAAGCTTGGCTTCATTCCCAACCTATGTTGAAGgtacagccagaagagatgagccaggggatatttgcaggggttgtttatag #### Apba1_ID5238_8 --> 0 - 0 Original Alignment GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT attatacatggggattatccaaaatggggaatcttgatcctttttcttagGCCCTGCTGATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATACCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGTCAGAAAGAAGCCAGTGACCTACTTAACACCAGAGACATATACAATGATGGTTTCCTGCAATCTTCCAAACCAGAGAATTGTAAAGATgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct Alignment from CESAR GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT attatacatggggattatccaaaatggggaatcttgatcctttttcttagGCCCTGCTGATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATACCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGTCAGAAAGAAGCCAGTGACCTACTTAACACCAGAGACATATACAATGATGGTTTCCTGCAATCTTCCAAACCAGAGAATTGTAAAGATgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct Alignment from Spaln_aa2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT attatacatggggattatccaaaatggggaatcttgatcctttttcttagGCCCTGCTGATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATACCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGTCAGAAAGAAGCCAGTGACCTACTTAACACCAGAGACATATACAATGATGGTTTCCTGCAATCTTCCAAACCAGAGAATTGTAAAGATgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct Alignment from Spaln_nt2Genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT attatacatggggattatccaaaatggggaatcttgatcctttttcttagGCCCTGCTGATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATACCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGTCAGAAAGAAGCCAGTGACCTACTTAACACCAGAGACATATACAATGATGGTTTCCTGCAATCTTCCAAACCAGAGAATTGTAAAGATgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct Alignment from Pairagon GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT attatacatggggattatccaaaatggggaatcttgatcctttttcttagGCCCTGCTGATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATACCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGTCAGAAAGAAGCCAGTGACCTACTTAACACCAGAGACATATACAATGATGGTTTCCTGCAATCTTCCAAACCAGAGAATTGTAAAGATgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct Alignment from Exonerate_protein2genome GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT attatacatggggattatccaaaatggggaatcttgatcctttttcttagGCCCTGCTGATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATACCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGTCAGAAAGAAGCCAGTGACCTACTTAACACCAGAGACATATACAATGATGGTTTCCTGCAATCTTCCAAACCAGAGAATTGTAAAGATgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct Alignment from Exonerate_coding2genome attatacatggggattatccaaaatggggaatcttgatcctttttcttaggccctgctgattgcacaatccataggacaggcattcagtgttgcataccaggaatacctcagggccaatggtattaacccagaagacctcagtcagaaagaagccagtgacctacttaacaccagagacatatacaatgatggtttcctgcaatcttccaaaccagagaattgtaaagatgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct Alignment from GeneWise GCCCAGCTGATCGCGCAGTCCATAGGACAGGCATTCAGTGTTGCGTACCAGGAATTCCTCAGGGCCAATGGCATCAACCCAGAAGACCTCAGCCAGAAGGAATACAGTGACCTGCTCAACACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGAT attatacatggggattatccaaaatggggaatcttgatcctttttcttagGCCCTGCTGATTGCACAATCCATAGGACAGGCATTCAGTGTTGCATACCAGGAATACCTCAGGGCCAATGGTATTAACCCAGAAGACCTCAGTCAGAAAGAAGCCAGTGACCTACTTAACACCAGAGACATATACAATGATGGTTTCCTGCAATCTTCCAAACCAGAGAATTGTAAAGATgtgagggctttcaggacttgtggtgaggtgcaccagaagggcaggaccct #### Arl2_ID1475_4 --> 0 - 0 Original Alignment CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat Alignment from CESAR CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat Alignment from Spaln_aa2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat Alignment from Spaln_nt2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat Alignment from Pairagon CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat Alignment from Exonerate_protein2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat Alignment from Exonerate_coding2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat Alignment from GeneWise CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG accttgggacctggaggtagataaatcagatatgaattctctttctgcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtcagttaggccagtggttggtggctgggacaatcaagtgatatgtatat #### Arl2_ID1476_3 --> 1 - 0 Original Alignment aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg Alignment from CESAR aTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagaTTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg Alignment from Spaln_aa2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg Alignment from Spaln_nt2Genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg Alignment from Pairagon ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg Alignment from Exonerate_protein2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg Alignment from Exonerate_coding2genome ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg Alignment from GeneWise ATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTACTGGAGGAACTACTTTGAGAGCACGGATGGCCTCATCTGGGTGGTGGACAGCGCCGACCGCCAGCGCATGCAGGACTGTCAGCGAGAGCTGCAGAGCCTACTGGTGGAGGAG ggctctgagtcatggtcacagagagactccactgtctgcttttgacatagATTCAAGCTGAACATCTGGGATGTAGGTGGCCAGAAGTCTCTGCGCTCCTATTGGAGGAACTACTTTGAGAGCATGGATGGTTTCATCTGGGTGGTAGACAGTGCTTACCACCAGCGCATGCAGGACTGTCAGCTAGAGTTGCAGAGCCTACTGGTTGAGGAGgtaagactgtagctctgacttgcattaaggtctgttcctttgctgagctg #### Arl3_ID9952_4 --> 0 - 0 Original Alignment ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct Alignment from CESAR ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct Alignment from Spaln_aa2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct Alignment from Spaln_nt2Genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct Alignment from Pairagon ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct Alignment from Exonerate_protein2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct Alignment from Exonerate_coding2genome ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct Alignment from GeneWise ATCTATGTAATTGACAGTGCCGACAGAAAGAGATTTGAAGAGACGGGTCAG cattctttcctatgttgtgtggaagaactttgtcttcctcatgactccagATCTATGTAATTGACAGTGCTGACAGAAAGAGATTTGAGCAGACAGGCCAGgtgagtgaattctttttgtgttgatgttacccaacccaaccctagcacct #### Asah2_ID6655_19 --> 0 - 2 Original Alignment ACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGACTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGag tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagACCTATCAAACCTTCCTCACTGTGGAGAAATATGAGGACTCAGTAGCTGAATGGCAAATCATGTATAATGATGCCTCCTGGGAGACCaggtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc Alignment from CESAR ACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGACTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGag tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagACCTATCAAACCTTCCTCACTGTGGAGAAATATGAGGACTCAGTAGCTGAATGGCAAATCATGTATAATGATGCCTCCTGGGAGACCaggtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc Alignment from Spaln_aa2Genome ACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGACTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGAG tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagACCTATCAAACCTTCCTCACTGTGGAGAAATATGAGGACTCAGTAGCTGAATGGCAAATCATGTATAATGATGCCTCCTGGGAGACCAGgtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc Alignment from Spaln_nt2Genome ACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGACTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGAG tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagACCTATCAAACCTTCCTCACTGTGGAGAAATATGAGGACTCAGTAGCTGAATGGCAAATCATGTATAATGATGCCTCCTGGGAGACCAGgtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc Alignment from Pairagon ACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGACTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGAG tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagACCTATCAAACCTTCCTCACTGTGGAGAAATATGAGGACTCAGTAGCTGAATGGCAAATCATGTATAATGATGCCTCCTGGGAGACCAGgtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc Alignment from Exonerate_protein2genome ACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGACTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGAG tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagACCTATCAAACCTTCCTCACTGTGGAGAAATATGAGGACTCAGTAGCTGAATGGCAAATCATGTATAATGATGCCTCCTGGGAGACCAGgtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc Alignment from Exonerate_coding2genome tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagacctatcaaaccttcctcactgtggagaaatatgaggactcagtagctgaatggcaaatcatgtataatgatgcctcctgggagaccaggtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc Alignment from GeneWise ACCCATCAAACCTTCCTCACTGTGGAGAAATACGAGGACTCTGTAGCTGACTGGCAGATAATGTATAACGATGCCTCCTGGGAGACGAG tcccaggatgggaacacaagctgaatatgctgtctgtctgtgtgtttcagACCTATCAAACCTTCCTCACTGTGGAGAAATATGAGGACTCAGTAGCTGAATGGCAAATCATGTATAATGATGCCTCCTGGGAGACCAGgtaagcatgtctaccttacatttgcccaggtgtgtggaaaccagtagctc #### Asah2_ID6660_14 --> 1 - 0 Original Alignment aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagaACCATGTCTGGGCAAAAATTCCGTGAGGCAATTCAAAATgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac Alignment from CESAR aACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagaACCATGTCTGGGCAAAAATTCCGTGAGGCAATTCAAAATgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac Alignment from Spaln_aa2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagAACCATGTCTGGGCAAAAATTCCGTGAGGCAATTCAAAATgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac Alignment from Spaln_nt2Genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagAACCATGTCTGGGCAAAAATTCCGTGAGGCAATTCAAAATgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac Alignment from Pairagon AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagAACCATGTCTGGGCAAAAATTCCGTGAGGCAATTCAAAATgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac Alignment from Exonerate_protein2genome AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagAACCATGTCTGGGCAAAAATTCCGTGAGGCAATTCAAAATgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac Alignment from Exonerate_coding2genome tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagaaccatgtctgggcaaaaattccgtgaggcaattcaaaatgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac Alignment from GeneWise AACCATGTCGGGACGAAGATTTCGTGAGGCAATTAAAAAA tctccacaaataggtagcaattgtccaccttacacttcttggtttcacagAACCATGTCTGGGCAAAAATTCCGTGAGGCAATTCAAAATgtgggctaaataataaaatattaaagtcccaattggtcatgataatacac #### Asah2_ID6662_12 --> 2 - 0 Original Alignment gaACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacaggaACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat Alignment from CESAR gaACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacaggaACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat Alignment from Spaln_aa2Genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacagGAACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat Alignment from Spaln_nt2Genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacagGAACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat Alignment from Pairagon GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacagGAACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat Alignment from Exonerate_protein2genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacagGAACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat Alignment from Exonerate_coding2genome GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacagGAACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat Alignment from GeneWise GAACTACGGAAGGGGATCCATTCTGGGACACTCTTCGGGACCAGCTCTTGGGAAAACCATCTGAAGAGATTGTAGAGTGTCAGAAACCCAAACCAATCCTGCTTCACAGTGGAGAG tgtgatggcaaagaggcatagtattgctacatgttttccttttcttacagGAACCACGGAAGGGGATCCATTTTGGGATACCCTCCGAGACCAGCTTCTGGGAAAAACGTCTGAAGAGATTGTAGAGTGTCAAAAGCCTAAACCAATCCTGCTTCACAGCGGGGAGgtatgcacccagatatgcttctgactgacctgatggtctataaagaatat #### Asah2_ID6667_7 --> 1 - 0 Original Alignment cTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagcTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat Alignment from CESAR cTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagcTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat Alignment from Spaln_aa2Genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagCTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat Alignment from Spaln_nt2Genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagCTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat Alignment from Pairagon CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagCTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat Alignment from Exonerate_protein2genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagCTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat Alignment from Exonerate_coding2genome CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagCTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat Alignment from GeneWise CTGGTTTGCCATCCACCCCGTGAGCATGAACAATAGCAACCACTTTGTGAATAGTGACAATATGGGCTATGCGGCTTACCTTTTTGAGCAAGAAAAGAACAAAGGCTATCTGCCTGGACAG tctaaaagcctgttttctgaacccctttcccaccacctttcttccatcagCTGGTTTGCCATCCGGCCCATAAGCATGAACAATAGCAACCACTTTGTGAATACTGACAACAAGGGCTATGCTGCTTACCTCTTTGAGCAAGAAAAGAACAAGGGCTATCTGCCTGGAAAAgtttgtttgcacactggtgagtctgtgttgggaatattagaagaggccat #### Asah2_ID6669_5 --> 0 - 2 Original Alignment AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAaggtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac Alignment from CESAR AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAag ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAaggtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac Alignment from Spaln_aa2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAAGgtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac Alignment from Spaln_nt2Genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAAGgtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac Alignment from Pairagon AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAAGgtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac Alignment from Exonerate_protein2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAAGgtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac Alignment from Exonerate_coding2genome AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAAGgtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac Alignment from GeneWise AGCATTGATATAGCTCACACAAATCTTAAACCAGGCAAAATCTTTATCAACAAAGGAAATGTTGCTAATGTGCAGATCAACCGAAGCCCCTCCTCTTACCTTCTGAATCCACAGTCAGAGAGAGCAAG ttcagtatttggattctggattgcaagcgctgcctccgttcttgttgcagAGCATTGATATTGCTCACACAAATCTCAAACCTGGCAAAATCTTTATCAATAAGGGAAATGTAGCCAACCTGCAGATCAATCGAAGTGCCTCATCTTACCTCCTCAATCCACAATCAGAGAGAGCAAGgtaagctatactgacagtgtcagaagcatactaatgaatgaagcaacaac #### Asah2_ID6672_2 --> 2 - 0 Original Alignment atTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagatTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt Alignment from CESAR atTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagatTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt Alignment from Spaln_aa2Genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagATTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt Alignment from Spaln_nt2Genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagATTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt Alignment from Pairagon ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagATTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt Alignment from Exonerate_protein2genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagATTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt Alignment from Exonerate_coding2genome ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagATTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt Alignment from GeneWise ATTCAGGAAATCACTGGTTTTCAACCACTCTGGGCTCCACGACAACCCAGCCCCCTCCAATTACACAGACTCCAAACTTCCCTTCATTTCGGAACTTCAGTGGCTACTACATTGGCGTTGGGAGAGCAGATTGCACAGGACAAGTGTCAGATATCAATTTG agtcaagagggataaggtgtcatgatagctcttctgtgcggtatgtacagATTCAGGAAATCAATGGTTCTCAACCACTCTGGGCTCTACAACTACCCAGCCTCCTCCGATTCCAGAGACTCCAATCTTCCCTTCCTTCCGCAACTTCACTGGCTATTACATTGGAGTTGGGCGAGCAGATTGTACAGGACAAGTCTCAGATACTAACTTGgtaccaatgcctcatgggtagattagaatagcctgcaataggtaactctt #### Asrgl1_ID2598_2 --> 2 - 1 Original Alignment ccTCCATCGATGTGAGTCTC------GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAg tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacagccTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTT---GATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAggtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc Alignment from CESAR ccTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAg tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacagccTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTTGATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAggtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc Alignment from Spaln_aa2Genome CCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacagCCTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTTGATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc Alignment from Spaln_nt2Genome CCTCCATCGATGTGAGTCTCG---TGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacagCCTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTTGATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc Alignment from Pairagon CCTCCATCGATGTGAGTCTC------GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacagCCTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTTG---ATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc Alignment from Exonerate_protein2genome GCCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacaGCCTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTTGATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc Alignment from Exonerate_coding2genome GCCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacaGCCTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTTGATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc Alignment from GeneWise GCCTCCATCGATGTGAGTCTC---GTGGTGGTAGTCCATGGTGGCGGAGCAAGCAACATCTCAGCCAACCGGAAAGAGCTGGTGCGCGAGGGCATCGCCAGAGCGGCAACCGAGGGCTACAAAATCCTCAAGGCGGGAGGGAGCGCGGTAGATGCTGTGGAAGGAGCCGTGACTGTCCTGGAAAACGACCCAGAGTTCAACGCAG tgagaacaggcagaccagttcttaatgatttctgatgttggctttcacaGCCTCTATTGATGTGAGCCTCAGTCTTGTGGTGGTTGATGTTAGTGGAGCGACCAACATTTCGTCCAATTGCAAGGAGCTGGTGCATGAGGGCATTGCCAGAGCAGCAACTGACGGTTACAAGCTCCACAAGGCAGGAGGGAGTGCAGTAGATGCTGTGGAAGGGGCTGTTGCTGTCCTGGAAAATGACCCAGAGTTCAATGCAGgtaagttatgcttgctaggtgaatgattccaggctatgaggtccctgtcc #### Atad1_ID6724_6 --> 0 - 0 Original Alignment GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt Alignment from CESAR GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt Alignment from Spaln_aa2Genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt Alignment from Spaln_nt2Genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt Alignment from Pairagon GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt Alignment from Exonerate_protein2genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt Alignment from Exonerate_coding2genome GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt Alignment from GeneWise GTTATAGTAATGGGAGCTACCAATCGCCCTCAAGACCTTGACTCCGCTATAATGCGAAGAATGCCTACACGATTTCATATTAACCAGCCT tggaagtggaattagaaaaaagactggccccctctctccccctcttttagGTTATAGTAATGGGAGCTACTAATCGCCCTCAAGACCTTGATTCAGCTATAATGCGAAGAATGACAACAAGATTCCACTTTAACCAGCCAgtgcgtagtcctatccaagatgggggcactccatgattctgattgcaagt #### Atl3_ID2160_2 --> 2 - 0 Original Alignment gtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtttagaacttcttattctattatcatgatgtctttttgtttatttttaggtGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct Alignment from CESAR gtGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtttagaacttcttattctattatcatgatgtctttttgtttatttttaggtGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct Alignment from Spaln_aa2Genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtttagaacttcttattctattatcatgatgtctttttgtttatttttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct Alignment from Spaln_nt2Genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtttagaacttcttattctattatcatgatgtctttttgtttatttttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct Alignment from Pairagon GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtttagaacttcttattctattatcatgatgtctttttgtttatttttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct Alignment from Exonerate_protein2genome GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtttagaacttcttattctattatcatgatgtctttttgtttatttttagGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct Alignment from Exonerate_coding2genome GGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG gtttagaacttcttattctattatcatgatgtctttttgtttatttttaGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct Alignment from GeneWise GACCCGACATTCCAGTACGCAGTCACAGGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG ttcttattctattatcatgatg------TCTTTTTGTTTATTTTTA---GGTGATGCCATGGAAAATGGAAAACCTGGTCCAGTCCAGGTTGTTTTGGTTCATAAAGAGCAACATACCTTTGAGCTGGAAGAGAGAGCTTTAGCCAGCGTTCTCCTTCAAGACCATATCCAAGATCTTGATGTGGTGGTTGTATCAGTGGCTAGTGCCTTCCGAAGGGGTAAATCCTTCATCCTGGACTTTATGCTGCGGTACTTATACTCTCAAgtaaatatacattcgagtagaaaatacctagttgattgtggttgtaagct #### Atl3_ID2165_7 --> 0 - 0 Original Alignment ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact Alignment from CESAR ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact Alignment from Spaln_aa2Genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact Alignment from Spaln_nt2Genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact Alignment from Pairagon ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact Alignment from Exonerate_protein2genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact Alignment from Exonerate_coding2genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact Alignment from GeneWise ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctacagtaatataacatctttttatttactttttcctcacagACACTCATGTTTTTGATTCGAGATTGGAGCTTCCCATTTGAATATAACTATGGATTGCAAGGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaaggaggagatgagggttccagacggttccactttttgctccagaact #### Atl3_ID2171_11 --> 0 - 0 Original Alignment GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt Alignment from CESAR GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt Alignment from Spaln_aa2Genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt Alignment from Spaln_nt2Genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt Alignment from Pairagon GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt Alignment from Exonerate_protein2genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt Alignment from Exonerate_coding2genome GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt Alignment from GeneWise GCCACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCAAAGATATTTATTACAACAACATGGAAGAG aatgagacattatagtttcattttaagaatccttatgtcttcttccgcagGCTACTGCTGAAGCCAATAATTTGGCAGCTGCAGCCTCTGCCCGAGATATTTACTACAACAACATGGAAGAGgtaggtgatgggagaagtaaacgagaagctagcctttgtatgtgattttt #### Atrnl1_ID12430_3 --> 1 - 2 Original Alignment tCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTag gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagtCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTaggtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg Alignment from CESAR tCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTag gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagtCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTaggtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg Alignment from Spaln_aa2Genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg Alignment from Spaln_nt2Genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg Alignment from Pairagon TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg Alignment from Exonerate_protein2genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg Alignment from Exonerate_coding2genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg Alignment from GeneWise TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG gaaaatacctgatatatattttaaattggtggtgctgactttgtttttagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtactgaattgtcagatgaagaaaagctgctgtgttggttcctatattgg #### Atrnl1_ID12448_18 --> 2 - 1 Original Alignment ctCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAg agtatataattctgttgattttgaagctgaaattacccctggccttacagctCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAggtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca Alignment from CESAR ctCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAg agtatataattctgttgattttgaagctgaaattacccctggccttacagctCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAggtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca Alignment from Spaln_aa2Genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatataattctgttgattttgaagctgaaattacccctggccttacagCTCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca Alignment from Spaln_nt2Genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatataattctgttgattttgaagctgaaattacccctggccttacagCTCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca Alignment from Pairagon CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatataattctgttgattttgaagctgaaattacccctggccttacagCTCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca Alignment from Exonerate_protein2genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatataattctgttgattttgaagctgaaattacccctggccttacagCTCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca Alignment from Exonerate_coding2genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatataattctgttgattttgaagctgaaattacccctggccttacagCTCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca Alignment from GeneWise CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatataattctgttgattttgaagctgaaattacccctggccttacagCTCAGAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCGCGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTGGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcctactgacttgggtgagcacatggatgctaagagcccca #### Atrnl1_ID12449_19 --> 2 - 1 Original Alignment ctTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAg cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagctTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAggtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa Alignment from CESAR ctTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAg cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagctTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAggtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa Alignment from Spaln_aa2Genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagCTTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAGgtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa Alignment from Spaln_nt2Genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagCTTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAGgtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa Alignment from Pairagon CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagCTTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAGgtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa Alignment from Exonerate_protein2genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagCTTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAGgtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa Alignment from Exonerate_coding2genome CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagCTTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAGgtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa Alignment from GeneWise CTTGCCAGTGTAATGGACACAGCACGTGCATCAACAACAACGTCTGTGAGCAGTGTAAGAATCTCACCACTGGGCGACAGTGTCAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAACGGTGGGCAGTGCACAG cttgtggctgatactaatatatgagacattttcttcttctgtatttcaagCTTGCCAGTGTAATGGACACAGCACATGTATTAATAACAATGTCTGCGAGCAGTGTAAGAACCTGACCTCTGGGCGACAGTGTGAGGAATGCATGCCAGGGTACTATGGAGACCCAACCAATGGTGGACAATGCAGAGgtaggtacttttagctcattcaattttcatggcctactcaaatggtagaa #### Atrnl1_ID12456_23 --> 0 - 1 Original Alignment TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAg aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCAAAC---ATTAACCTCAATGACACA---TCAGTTGGCTCAACAggtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg Alignment from CESAR TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAg aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCA---AACATTAACCTCAATGACACA---TCAGTTGGCTCAACAggtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg Alignment from Spaln_aa2Genome TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCA---AACATTAACCTCAATGACACA---TCAGTTGGCTCAACAGgtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg Alignment from Spaln_nt2Genome TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCAAACA---TTAACCTCAATGACAC---ATCAGTTGGCTCAACAGgtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg Alignment from Pairagon TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCA-----ACATTACGTGGTCAGTTGGCTCAACAG aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCAAACA---TTAACCTCAATGACACA--------TCAGTTGGCTCAACAGgtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg Alignment from Exonerate_protein2genome TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCA---AACATTAACCTCAATGACACA---TCAGTTGGCTCAACAGgtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg Alignment from Exonerate_coding2genome TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCA---AACATTAACCTCAATGACACA---TCAGTTGGCTCAACAGgtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg Alignment from GeneWise TCAAACAAAAACTTGGACATTTCGATTAATGCTTCCAACAACTTTAATCTCAACATTACGTGGTCAGTTGGCTCAACAG aaccaacttctgctgttctacatttgattgacacattctttctccttcagTCAAACAAAAACTTGGACATCTCAATTAATGCTTCAAAC---ATTAACCTCAATGACACA---TCAGTTGGCTCAACAGgtgcgtaaaggtttattaccaccaacttccttgtatgtttgattgctctg #### Bbs1_ID725_9 --> 0 - 2 Original Alignment ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGAcggtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg Alignment from CESAR ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAag tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGAcggtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg Alignment from Spaln_aa2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGACGgtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg Alignment from Spaln_nt2Genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGACGgtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg Alignment from Pairagon ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGACGgtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg Alignment from Exonerate_protein2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGACGgtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg Alignment from Exonerate_coding2genome ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGACGgtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg Alignment from GeneWise ATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTTTGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAG tgggtaggtcaggacaaatggaaggaattaaaaaattcatgttcttacagATGAGCTTGCCAAGTGTCCCTGTTTTCCTGGAGGTTTCTGGACAGTTTGACGTGGAGTTCCGGTTGACTGCTGCATGCCGAAATGGGAGCATCTACATCCTGAGACGgtgagtacagtcataaagaaggggtcacctatgtcctgctagagttagtg #### Bbs1_ID727_7 --> 1 - 0 Original Alignment gTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG tacccgtagagctagctatggcaggctattgtcctatcggatatccccaggTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt Alignment from CESAR gTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG tacccgtagagctagctatggcaggctattgtcctatcggatatccccaggTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt Alignment from Spaln_aa2Genome GTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG tacccgtagagctagctatggcaggctattgtcctatcggatatccccagGTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt Alignment from Spaln_nt2Genome GTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG tacccgtagagctagctatggcaggctattgtcctatcggatatccccagGTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt Alignment from Pairagon GTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG tacccgtagagctagctatggcaggctattgtcctatcggatatccccagGTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt Alignment from Exonerate_protein2genome GTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG tacccgtagagctagctatggcaggctattgtcctatcggatatccccagGTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt Alignment from Exonerate_coding2genome GTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG tacccgtagagctagctatggcaggctattgtcctatcggatatccccagGTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt Alignment from GeneWise GACGTGCCTTTGTCTGTGCAGTCACTCAGGTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAACCAGCACAAGTCCAAGGTTATCAAGCGCCAG ccgtagagctagctatggcagGCTATTGTCCTATCG---GATATCCCCAGGTTTTTACAGCTAGAGCTGAGTGAAATGGAGGCATTTGTAAATCAGCACAAGTCCAAGGTGATAAAGCGCCAGgtaagtccttttcttgtcttctcactatgctaacagagtgcacctatgtt #### Bbs1_ID731_3 --> 2 - 0 Original Alignment caCTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttttagcaCTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac Alignment from CESAR caCTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttttagcaCTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac Alignment from Spaln_aa2Genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttttagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac Alignment from Spaln_nt2Genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttttagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac Alignment from Pairagon CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttttagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac Alignment from Exonerate_protein2genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttttagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac Alignment from Exonerate_coding2genome CTGTCACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttTTAGCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac Alignment from GeneWise CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cctggaacatctggattctacgaggatgaatatgtggtatatgtttttagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaagtaatcaccaatcagggatttgggggcacaataggagccagagcac #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ccacagctggaacaatagtctagagtctctctctccccattcctgcacagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGggtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGg ccacagctggaacaatagtctagagtctctctctccccattcctgcacagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGggtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGG ccacagctggaacaatagtctagagtctctctctccccattcctgcacagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGACAGCTACATTCAGCTCATCCCAATAGCTTTTGTCCTGGgtatgtgcctcttgtagctagtgatgactaggcctcacccaagcccctgc #### Blnk_ID8055_16 --> 0 - 0 Original Alignment GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca Alignment from CESAR GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca Alignment from Spaln_aa2Genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca Alignment from Spaln_nt2Genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca Alignment from Pairagon GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca Alignment from Exonerate_protein2genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca Alignment from Exonerate_coding2genome GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca Alignment from GeneWise GATGGATCGTTTCTTATTCGGAAGAGCTCTGGCCATGATTCCAAGCAGCCGTACACCCTAGTTGCGTTCTTTAACAAGCGAGTGTATAATATTCCTGTACGGTTTATTGAAGCAACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAG cacaaatgagtaaagagctattcctaacatgtgttttcctctcttgaaagGATGGATCGTTCCTTATTCGGAAGAGCTCTGGCCACGACTCTAAGCAGCCGTACACCCTAGTTGCCTTCTTCAACAAACGAGTTTATAATATTCCCGTGCGATTTATTGAAGTGACCAAACAGTATGCTTTGGGAAAGAAGAAAAATGGTGAAGAGgttaataacttttactctccctgagccttgagagatttgcctctattcca #### Blnk_ID8060_11 --> 0 - 1 Original Alignment ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAg aggtaatgctgttgaattgatttcccttaaagccctatctatctccttagACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAggtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc Alignment from CESAR ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAg aggtaatgctgttgaattgatttcccttaaagccctatctatctccttagACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAggtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc Alignment from Spaln_aa2Genome ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG aggtaatgctgttgaattgatttcccttaaagccctatctatctccttagACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAGgtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc Alignment from Spaln_nt2Genome ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG aggtaatgctgttgaattgatttcccttaaagccctatctatctccttagACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAGgtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc Alignment from Pairagon ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG aggtaatgctgttgaattgatttcccttaaagccctatctatctccttagACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAGgtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc Alignment from Exonerate_protein2genome ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG aggtaatgctgttgaattgatttcccttaaagccctatctatctccttagACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAGgtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc Alignment from Exonerate_coding2genome GAAGAAGCCAGCTACACCACTTAAGACTACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG tgctgttgaattgatttcccttAAAGCCCTATCTATCTCCT------TAGACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAGgtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc Alignment from GeneWise ACTCCCGTTCCTCCCCTACCGAATGCATCAAATGTTTGTGAAG aggtaatgctgttgaattgatttcccttaaagccctatctatctccttagACACCCGTTCCCCCCCTTCCAAATGCCTCCAATGTTTGTGAAGgtaagcgtactgtgttcattctgagagggttgtgggatgtactgtacacc #### Blnk_ID8065_6 --> 2 - 0 Original Alignment atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagatAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga Alignment from CESAR atAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagatAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga Alignment from Spaln_aa2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga Alignment from Spaln_nt2Genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga Alignment from Pairagon ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga Alignment from Exonerate_protein2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga Alignment from Exonerate_coding2genome ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga Alignment from GeneWise ATAATCGATCCAGCCAGCGGCACTCTCCGCCCTTCAGCAAGACACTTCCCAGTAAGCCCAGCTGGCCTTCAGCGAAAGCGAGGCTGGCCTCCACTCTGCCAGCCCCCAACTCTCTACAGAAGCCTCAAGTCCCCCCCAAGCCCAAAGACCTCCTTGAGGATGAG gattaccgcatggagaagcttagaatctttcattctgtgctactttgcagATAACCAATCTAGCCAGCGCCACTCACCTCCCTTCAGTAAGACGCTTCCCAGCAAGCCAAGTTGGCCTTCATCAAAGGCGAGGCTAGCATCTACTCTACCAGCCCCTAACTCTCTGCAGAAACCTCAAATCCCTACCAAGCCCAAGGACCTTCTTGAGGATGAGgtaggggcagcctaggaaggtcccatctacagtcccctgtcgttcaagga #### Blnk_ID8066_5 --> 0 - 1 Original Alignment GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAggtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca Alignment from CESAR GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAg aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAggtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca Alignment from Spaln_aa2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca Alignment from Spaln_nt2Genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca Alignment from Pairagon GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca Alignment from Exonerate_protein2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca Alignment from Exonerate_coding2genome GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca Alignment from GeneWise GACAGTGACTATGAAAATCCAGATGAACATTCGGACTCCGAGATGTATGTGATGCCTGCCGAGGAGACGGGCGACGATTCCTATGAACCGCCTCCCGCTGAGCAGCAGACACGGGTGGTCCATCCAGCCCTGCCCTTCACGAGGGGCGAGTATGTAG aagtgggatccaagtaatagacaaggtatgtttctttgtggtgacctcagGACAGTGACTATGAAAATCCAGATGAACATTCGGACTCTGAGATGTATGTGATGCCTGCCGAGGAGACAGGAGATGATTCCTATGAACCACCTCCTGCTGAGCAGCAGACACGGGTGGTCCATCCAGCACTGCCCTTCACGAGGGGTGAGTATGTAGgtaagccagtgtggatactgagattacgggaataggcaaatgctgtcgca #### Blnk_ID8068_3 --> 1 - 1 Original Alignment gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcaggCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAggtactgctcttctttctaacatacattattgggctcatgtgtagggctga Alignment from CESAR gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcaggCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAggtactgctcttctttctaacatacattattgggctcatgtgtagggctga Alignment from Spaln_aa2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcagGCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAGgtactgctcttctttctaacatacattattgggctcatgtgtagggctga Alignment from Spaln_nt2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcagGCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAGgtactgctcttctttctaacatacattattgggctcatgtgtagggctga Alignment from Pairagon GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcagGCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAGgtactgctcttctttctaacatacattattgggctcatgtgtagggctga Alignment from Exonerate_protein2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcagGCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAGgtactgctcttctttctaacatacattattgggctcatgtgtagggctga Alignment from Exonerate_coding2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcagGCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAGgtactgctcttctttctaacatacattattgggctcatgtgtagggctga Alignment from GeneWise GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tacagttacggtaaaccttatgttgtgtccctgaggactcccgcctgcagGCTGAAAGTCAAAGGCCCTCCAAGTGTGCCTCGAAGTGACTATGCATTAGgtactgctcttctttctaacatacattattgggctcatgtgtagggctga #### Bloc1s2_ID8949_2 --> 2 - 1 Original Alignment atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccagacGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAggtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc Alignment from CESAR atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccagacGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAggtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc Alignment from Spaln_aa2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccagACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc Alignment from Spaln_nt2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccagACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc Alignment from Pairagon ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccagACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc Alignment from Exonerate_protein2genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccagACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc Alignment from Exonerate_coding2genome GATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccaGACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc Alignment from GeneWise GATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaaggctgggaggtctactcctcacacttctgtctgtgtgtcccaGACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtgagttgagatacctttgtgctgagtcaattatgtctggcaaccatatc #### Bscl2_ID2419_2 --> 0 - 2 Original Alignment GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACag agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACaggtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct Alignment from CESAR GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACag agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACaggtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct Alignment from Spaln_aa2Genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACAGgtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct Alignment from Spaln_nt2Genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACAGgtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct Alignment from Pairagon GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACAGgtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct Alignment from Exonerate_protein2genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACAGgtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct Alignment from Exonerate_coding2genome GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACAGgtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct Alignment from GeneWise GAACCTTCAGCTGCCCTATCCCATGGCCAAGGGTATCGTCCCTGTGGAAGACCAGCCAGGAACTCAAAGCCTGAGGCTGGGGCCAGACCCCCTGCTGTCCCCATCATGGTCAATGACCCACCAGTCCCCGCCTTACTGTGGGCCCAGGAAGTGGGCCACGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCTCTTCTGCACCATCCTTCTTTTGCTTTGGGTGTCTGTGTTCCTCTATGGCTCCTTCTACTACTCCTACATGCCGACGGTCAGCCACCTCAGCCCTGTGCACTTCCACTACAG agagatgtcacgtcgcccctctctctgcttttctccctccacgtttctagGAGCCTTCAGCTGCTCTCTCACATGGCCAAGGGTATCGTCCCTGTGGCAGACCAGCTAGGAACTCAAAGCCTGAGGCTGGGACCAGACCCCCTGCTGTCCCCATCACGGTCAATGACCCACCAGTCCCTGCCTTACTGTGGGCCCAAGAAGTGGGCCATGTCTTGGCAGGCCGTGCCCGCAGGCTGATGCTGCAGTTTGGGGTGCCCTTGTGCACCATCCTTCTTTTGCTTTGGGTGTCAGTGTTCCTCTATGGTTCATGCTACTATTCCTACATGCCAATGGTAAGCCACCTCAGTCCTGTGCACTTCCACTACAGgtaagtcactcgtttctttagatccttgaagctaagtgacaattatctct #### Bscl2_ID2421_4 --> 0 - 0 Original Alignment GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat Alignment from CESAR GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat Alignment from Spaln_aa2Genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat Alignment from Spaln_nt2Genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat Alignment from Pairagon GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat Alignment from Exonerate_protein2genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat Alignment from Exonerate_coding2genome GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat Alignment from GeneWise GTACTGATGTATGGACAGCCATATCGAGTCACCTTAGAGCTTGAACTGCCCGAATCCCCTGTGAATCAAGACTTGGGCATGTTCTTAGTCACTGTTTCATGTTATACCAGAGGTGGCCGAATCATCTCCACTTCTTCACGCTCA cttgttgccaggtcactctcaattcaccgataatgtttttttcttaacagGTATTGATGTATGGACAGCCATATCGAATCACTCTAGAGCTTGAATTGCCCAAATCCCCTGTGAATCAAGGCTCAGGCATGTTCCTAGTAAGTATTTCATGTCGTACCAGAGGTAGTCAAATCATCTCTACATATTCAAGCTCTgtaaaggcttatggacaatactgaagtgttgcccagcttggtttggggat #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga #### Btaf1_ID7221_4 --> 2 - 1 Original Alignment aaCCTACAGAGAGT---------TCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagaaTCTGCCGAAAGTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAggtaagggggttgggagctctgggatttgcatttcaaattaaagcataact Alignment from CESAR aaCCT---------ACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagaaTCTGCCGAAAGTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAggtaagggggttgggagctctgggatttgcatttcaaattaaagcataact Alignment from Spaln_aa2Genome AACCTACA---------GAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagAATCTGCCGAAAGTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtaagggggttgggagctctgggatttgcatttcaaattaaagcataact Alignment from Spaln_nt2Genome AACCTACAGAGAGTTC---------TATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagAATCTGCCGAAAGTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtaagggggttgggagctctgggatttgcatttcaaattaaagcataact Alignment from Pairagon AACCTA---------CAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagAATCTGCCGAAAGTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtaagggggttgggagctctgggatttgcatttcaaattaaagcataact Alignment from Exonerate_protein2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagaatctgccgAAAGTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtaagggggttgggagctctgggatttgcatttcaaattaaagcataact Alignment from Exonerate_coding2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagaatctgccgAAAGTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtaagggggttgggagctctgggatttgcatttcaaattaaagcataact Alignment from GeneWise TACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctggcaccgacgtgcaagaagattttattgttatttatctttgcagaatctgccgaaagTTCCGAAAGTTCTATGGAAGATTCATCTAATGCAGATCAATTGAACTTTGACAGATTTGATATATGCAGGTTATTACAGCCTGCAGCATCACTTTTGGGATCTGCTGGTGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtaagggggttgggagctctgggatttgcatttcaaattaaagcataact #### Btaf1_ID7240_19 --> 0 - 0 Original Alignment GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga Alignment from CESAR GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga Alignment from Spaln_aa2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga Alignment from Spaln_nt2Genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga Alignment from Pairagon GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga Alignment from Exonerate_protein2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga Alignment from Exonerate_coding2genome GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga Alignment from GeneWise GAGTGTAAAGCTGTTACCCTAGCTGTGCAACCGCGTTTACTTGATATCCTTTCAGAACATTTGTATTATGATGAAATTGCTGTTCCGTTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGAGTAAACAACAATGTTTTAACAATAGATCAAGCAAACGACCTG ggctcatacagcctctgtctttcctctatgtgttcttttttggcatttagGAATGTAAAGCTGTTACTCTAGCTGTGCAACCACGTTTACTTGATATCCTTTCAGAACACTTGTATTATGACGAAATTGCTGTCCCATTCACACGTATGCAGAATGAATGTAAACAGTTTATATCATCATTAGCTGATGCACATATTGAAGTTGGTAATAGTGTAAATAACAATGCATTAACAATAGATCAAGCAAATGACCTGgtaatgtacataagtcaaaaggcaaccttcctaacaagtctaaggtctga #### Btaf1_ID7246_25 --> 2 - 0 Original Alignment gtGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttaggtGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact Alignment from CESAR gtGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttaggtGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact Alignment from Spaln_aa2Genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttagGTGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact Alignment from Spaln_nt2Genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttagGTGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact Alignment from Pairagon GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttagGTGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact Alignment from Exonerate_protein2genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttagGTGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact Alignment from Exonerate_coding2genome GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttagGTGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact Alignment from GeneWise GTGTTATGGAACAATTGGATGTCGGTATTGTTCCATATATTGTCCTTTTAGTTGTTCCTGTATTGGGAAGGATGAGTGATCAGACAGACAGTGTGAGATTCATGGCTACTCAGTGCTTTGCAACACTGATTAGACTGATGCCACTTGAG cggaagatgtactaaagaatgtattatatattttccttctttatggttagGTGTTATGGAGCAACTGGATGTTGGTATTGTTCCATATATTGTTCTTTTCGTGGTTCCAGTGTTGGGTCGAATGAGTGATCAAACAGACAGTGTGCAGTTTACGGCGGCTCAGTGCTTTGCAACACTGATGAGGCTCATGCCACTTGAGgtaggattgctcaatgtggttcagttctttataaccagagagtggtaact #### Btaf1_ID7249_28 --> 1 - 2 Original Alignment gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag aacctgatcaatctaaattgattactagcgcatttctcccatctctacaggGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAaggtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt Alignment from CESAR gGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAag aacctgatcaatctaaattgattactagcgcatttctcccatctctacaggGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAaggtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt Alignment from Spaln_aa2Genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aacctgatcaatctaaattgattactagcgcatttctcccatctctacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt Alignment from Spaln_nt2Genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aacctgatcaatctaaattgattactagcgcatttctcccatctctacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt Alignment from Pairagon GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aacctgatcaatctaaattgattactagcgcatttctcccatctctacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt Alignment from Exonerate_protein2genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aacctgatcaatctaaattgattactagcgcatttctcccatctctacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt Alignment from Exonerate_coding2genome GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aacctgatcaatctaaattgattactagcgcatttctcccatctctacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt Alignment from GeneWise GGCCCAGGAATATGCAAGATCGAAATTGGCAGAATGTATGCCACTTCCTTCCTTGGTGGTTTGTCCACCAACATTAACAGGTCATTGGGTAGATGAAGTAGGTAAATTTTGTTCCAGAGAATATCTCAATCCGTTGCATTATACTGGCCCTCCCACTGAAAGGATAAG aacctgatcaatctaaattgattactagcgcatttctcccatctctacagGGCCCAGGAATATGCAAGATCAAGATTGGCAGAATGTATGCCACTTCCTTCCTTAGTGGTTTGTCCTCCAACATTGACAGGTCACTGGGTAGATGAAGTAGGGAAATTTTGTTCCAGAGAATATCTCAATCCATTACATTATACCGGCCCTTCCACTGAAAGGATAAGgtaataagtgtgacgtctaacaattcatagttaatgtctttcgcaaatgt #### Btaf1_ID7253_32 --> 2 - 0 Original Alignment gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacaggtGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa Alignment from CESAR gtGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacaggtGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa Alignment from Spaln_aa2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacagGTGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa Alignment from Spaln_nt2Genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacagGTGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa Alignment from Pairagon GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacagGTGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa Alignment from Exonerate_protein2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacagGTGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa Alignment from Exonerate_coding2genome GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacagGTGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa Alignment from GeneWise GTGTCCTGGCAATGGACGCTCTGCACCGCCAAGTCCTGCCGTTCCTTCTCAGAAGAATGAAAGAAGATGTTTTGCAGGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTCCAG caggagaatggggtcttgtgagtcctcacataatgtcctttttgtcacagGTGTACTGGCAATGGATGCTCTGCACCGCCAAGTCCTGCCATTGCTTCTTAGAAGAATGAAAGAAGATGTATTGCATGATCTTCCACCTAAAATTATTCAAGACTATTACTGTACTCTCAGCCCTCTTCAAgtatgtactgcggtcattgtagatgtaggtatgatgctgtttgcatgaaa #### Btaf1_ID7257_36 --> 1 - 0 Original Alignment gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtaggTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat Alignment from CESAR gTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtaggTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat Alignment from Spaln_aa2Genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtagGTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat Alignment from Spaln_nt2Genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtagGTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat Alignment from Pairagon GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtagGTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat Alignment from Exonerate_protein2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtagGTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat Alignment from Exonerate_coding2genome GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtagGTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat Alignment from GeneWise GTTTAACAACGACCCCTCCATCGATGTTCTTCTACTCACAACTCACGTTGGTGGCCTGGGCCTGAACTTGACTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTGGAACCCTATGCGAGATCTGCAGGCCATGGACCGGGCCCATCGTATTGGGCAG cgcaggcaaaagtatccttgtgtgaggcatgtccaactgtttctttgtagGTTCAACAACAAACCCTCAATTGATGCTCTTCTACTTACAACTCATGTGGGTGGTCTAGGCTTGAATTTGAGTGGAGCTGACACTGTGGTGTTTGTGGAGCATGACTTAAACCCAATGTGTGATCTACAGGCCATGGACCGGGCCCATCGTATTGGGCAGgttcgttattccacactgcattaatgttggacagatagagctactcagat #### Btaf1_ID7258_37 --> 0 - 0 Original Alignment AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc Alignment from CESAR AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc Alignment from Spaln_aa2Genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc Alignment from Spaln_nt2Genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc Alignment from Pairagon AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc Alignment from Exonerate_protein2genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc Alignment from Exonerate_coding2genome AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc Alignment from GeneWise AAACGTGTGGTTAATGTCTACCGGTTGATAACCAGAGGAACACTAGAAGAAAAGATAATGGGCTTGCAGAAATTCAAGATGAACATCGCAAATACTGTTATTAGCCAAGAAAACTCTAGCTTACAGAGTATGGGCACTGATCAACTTCTTGACCTGTTCACTCTAGATAAG aggcgctgtgagtctgtcaagttcgcgtttttgttttttttgccttccagAAACGTGTGGTTAATGTCTACCGGTTGATAACCCGAGGAACACTAGAAGAAAAGATAATGGGTTTGCAGAAGTTCAAGATGAACATTGCAAATACTGTTATTAGCCAAGAGAACTCTAGCTTACAGAGTATGGGCACCGATCAACTTCTTGACCTATTTACTCTGGATAAGgtgagtacagaatgagtgacctgacatgctttgctgcctcagggggagcc #### Btrc_ID9462_11 --> 0 - 2 Original Alignment GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCag agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCaggtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt Alignment from CESAR GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCag agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCaggtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt Alignment from Spaln_aa2Genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt Alignment from Spaln_nt2Genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt Alignment from Pairagon GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt Alignment from Exonerate_protein2genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt Alignment from Exonerate_coding2genome GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt Alignment from GeneWise GTGTGGAACACAAGTACCTGTGAATTCGTAAGGACCCTAAATGGGCACAAGCGTGGCATCGCCTGTTTGCAGTACAGAGACAGGCTGGTGGTGAGCGGCTCCTCTGACAACACCATCAG agtggggcatctcaggtcagagtagcccgcgaaccgtctcttttcatcagGTGTGGACCACTAGTACCTGTGAATTTGTAAGGACCTCGAACGGGCACAAGCGTGGCATTGCATGTTTGCAGTACAGAGACAGGCTGGTGGTGAGTGGCTCTTCTGACAATACCATCAGgtaagtcaaagaactgccttactagagcaccttcatgctatctccccagt #### C030046E11Rik_ID6290_4 --> 1 - 2 Original Alignment aGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGag ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagaGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGaggtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat Alignment from CESAR aGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGag ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagaGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGaggtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat Alignment from Spaln_aa2Genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat Alignment from Spaln_nt2Genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat Alignment from Pairagon AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat Alignment from Exonerate_protein2genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat Alignment from Exonerate_coding2genome AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat Alignment from GeneWise AGGAAGTCCACAAATGAAGGGGATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTGAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCACCCATTATGAG ctttctaagtttgtagtaaatatcattagtttatttgttctttctttcagAGGAAGTCCACAAATGAAGGGAATACCTCATTTTAAGGAAGAACATTGTGCCCCAGCATTAAATTTAGAAATGAAGAAAATACTGGATTTGCAAGCGCCCATTATGAGgtgagtcttgctgataggagtaaggtatcctgacagggaatgccatgtat #### C030046E11Rik_ID6297_11 --> 0 - 0 Original Alignment AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg Alignment from CESAR AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg Alignment from Spaln_aa2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg Alignment from Spaln_nt2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg Alignment from Pairagon AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg Alignment from Exonerate_protein2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg Alignment from Exonerate_coding2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg Alignment from GeneWise AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagtttctttgtgcatttactctttgttctttgtttttctttttagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATCGAGACTGACCTCAGGAGTACAGTTAAGGAGCCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaggtctaagtacagctttttacgaattactagtggtgttgtgtgcttg #### Cabp2_ID287_2 --> 0 - 0 Original Alignment GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCgtgagaacataatcccttgcacactggcatcttagggctgatggcttcat Alignment from CESAR GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCgtgagaacataatcccttgcacactggcatcttagggctgatggcttcat Alignment from Spaln_aa2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCgtgagaacataatcccttgcacactggcatcttagggctgatggcttcat Alignment from Spaln_nt2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCgtgagaacataatcccttgcacactggcatcttagggctgatggcttcat Alignment from Pairagon GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCgtgagaacataatcccttgcacactggcatcttagggctgatggcttcat Alignment from Exonerate_protein2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCGTGAGAACATAATCCCTTGCACACTGGCATCttagggctgatggcttcat Alignment from Exonerate_coding2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCGTGAGAACATAATCCCTTGCACACTGGCATCttagggctgatggcttcat Alignment from GeneWise GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC ataacagacaaatgtatgtgggcattgcacatctgctctctcctccttagGTACGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCTGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGCAGCCTTGTGGGACCTGCATGCATTTTCCTGCGACCTAGCATAGCTGCTACCCAGCTCgtgagaacataatcccttgcacactggcatcttagggctgatggcttcat #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAggtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAggtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAggtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGGTAAGCTTCCCCCTGCTTTGTCCCTTtatcttgtgcattgaactattaag #### Cabp4_ID341_3 --> 2 - 1 Original Alignment agCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCa atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagagCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTagtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt Alignment from CESAR agCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCa atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagagCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTagtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt Alignment from Spaln_aa2Genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagAGCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTAgtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt Alignment from Spaln_nt2Genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagAGCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTAgtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt Alignment from Pairagon AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagAGCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTAgtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt Alignment from Exonerate_protein2genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagAGCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTAgtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt Alignment from Exonerate_coding2genome AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagAGCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTAgtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt Alignment from GeneWise AGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGGCTACATCGGCTACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCTACATGCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCA atcagattcaaggtaactttaggttgtcgtaattgcatttttatgcatagAGCTCCAGGCAGCCTTTGAAGAGTCTGAGACTGACCAGGATGGTTACATTGGCTACCACAAATTAGGAGACTGCATGCGCACACTGGGCTACATGCCTATGGAGATGGAACTTCTAGAAGTCTCACAACATGTGAAGATGCGTAgtaagagaaagtgagcgtcatactttaatagtagaccttataagtggctt #### Cacul1_ID13281_2 --> 2 - 2 Original Alignment taATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACag tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagtaATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACaggtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa Alignment from CESAR taATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACag tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagtaATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACaggtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa Alignment from Spaln_aa2Genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa Alignment from Spaln_nt2Genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa Alignment from Pairagon TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa Alignment from Exonerate_protein2genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa Alignment from Exonerate_coding2genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa Alignment from GeneWise TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagggcatagtggtggttttcattcggtaactttcagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagttgccactcaacaatgagttcaccccccaatacagaaatacagaa #### Capn1_ID1362_14 --> 0 - 0 Original Alignment AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa Alignment from CESAR AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa Alignment from Spaln_aa2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa Alignment from Spaln_nt2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa Alignment from Pairagon AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa Alignment from Exonerate_protein2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa Alignment from Exonerate_coding2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa Alignment from GeneWise AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTGTTCAGCAAGTTGGCAGGGGAT cctaaatagttagtcttgttcttagcccgctctcccctcttctccttaagAAAGTTCTCTCTGAAGAAGAAATTGATGACAACTTCAAGACTTTGTTCAGCAAGTTGGCAGGGGATgtgagcaaggatagataagtatgataagctagagatcctaggtagagaaa #### Capn1_ID1363_13 --> 1 - 0 Original Alignment gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcaggGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg Alignment from CESAR gGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcaggGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg Alignment from Spaln_aa2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg Alignment from Spaln_nt2Genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg Alignment from Pairagon GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg Alignment from Exonerate_protein2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg Alignment from Exonerate_coding2genome GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg Alignment from GeneWise GGAACTAGATGACCAGATCCAGGCCAACCTCCCTGATGAG ctgcctacattcctaggtggctttgactaacctgtgttttgtgttttcagGGAACTAGATGACCAGATTCAGGCTAACCTCCCTGATGAAgtgagtggcccctttgtgtcctctgaaattcatataggatatgggctctg #### Capn1_ID1366_10 --> 2 - 0 Original Alignment ctACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagcaACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaatgcagatgtgggacacccattctggcaactatcagaatccattgag Alignment from CESAR ctACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagcaACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaatgcagatgtgggacacccattctggcaactatcagaatccattgag Alignment from Spaln_aa2Genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaatgcagatgtgggacacccattctggcaactatcagaatccattgag Alignment from Spaln_nt2Genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaatgcagatgtgggacacccattctggcaactatcagaatccattgag Alignment from Pairagon CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaatgcagatgtgggacacccattctggcaactatcagaatccattgag Alignment from Exonerate_protein2genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAGGTCCCTCGG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGGTAATGCAGatgtgggacacccattctggcaactatcagaatccattgag Alignment from Exonerate_coding2genome CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAGGTCCCTCGG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGGTAATGCAGatgtgggacacccattctggcaactatcagaatccattgag Alignment from GeneWise CTACCTTCTGGGTAAACCCCCAGTTCAAGATCCGGTTGGAGGAGGTGGATGACGCAGACGACTATGACAACCGGGAGTCGGGCTGCAGCTTCTTGCTGGCCCTCATGCAGAAACACCGCCGCAGGGAGCGTCGCTTTGGCCGGGACATGGAGACCATCGGTTTTGCAGTGTACCAG catcatctttttcgtgtgtcaaatccatttctgttccccccaccccccagCAACCTTCTGGGTAAACCCCCAGTTCAAGATCAGGTTGGAAGAGGTAGATGATGCCGATGATTACGACAATCGGGAGTCAGGCTGTAGCTTTTTGCTGGCTCTCATGCAGAACCACCGACGCAGGGAGCATCGCTTTGGCCAGGACATGGAGACTATCAGCTTTGCAGTGTATCAGgtaatgcagatgtgggacacccattctggcaactatcagaatccattgag #### Capn1_ID1371_5 --> 1 - 0 Original Alignment aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT agtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagaGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta Alignment from CESAR aGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT agtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagaGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta Alignment from Spaln_aa2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT agtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagAGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta Alignment from Spaln_nt2Genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT agtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagAGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta Alignment from Pairagon AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT agtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagAGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta Alignment from Exonerate_protein2genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT agtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagAGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta Alignment from Exonerate_coding2genome AGTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT agtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagAGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta Alignment from GeneWise - -GTGAATGGCAGCTATGAGGCTCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGACCTGCAGAAGGCCCCCAGCGACCTCTACCAGATCATTCTAAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT AgtaaatggtgtcctgacactggcatttcgtgttcttgacccacaaccagAGTGAATGGCAGTTATGAGGCTCTTTCAGGTGGCTGCACCTCCGAAGCCTTTGATGACTTTGCTGGAGGGGTCACTGAATGGTATGATCTGCAGAAAGCCCCCAGTGACCTCTATCAGATCATTCTAAAGGCCTTAGAACCAGGCTCTTTATTAGGCTGCTCCATAAATgtatctggagggcaaaggtcccttgacaactttccattctgcatgaccta #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGG---CCAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccagccaggcccatgaaggatgcttctcttccagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTCCCAAGGACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGGGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGATTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagtccagatggacaacaaggctctgtctgatttacttggtggctagg #### Carns1_ID390_2 --> 0 - 1 Original Alignment CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAg ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctagCTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGT---CTCCAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAggtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa Alignment from CESAR CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGC---GGTGCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAg ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctagCTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGTCTC---CAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAggtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa Alignment from Spaln_aa2Genome CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGC---GGTGCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctagCTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGTCTC---CAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa Alignment from Spaln_nt2Genome CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGTGCTG---GCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctagCTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGT---CTCCAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa Alignment from Pairagon CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGTGCT---GGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctagCTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGTCTC---CAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa Alignment from Exonerate_protein2genome CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGC---GGTGCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctagCTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGT---CTCCAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa Alignment from Exonerate_coding2genome CTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGC---GGTGCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctagCTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGT---CTCCAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa Alignment from GeneWise ATGCTCTGCCTGGATCCACTGGGTACGGAGTGGGACTCCAAGGACCTGGATGGAAAGGAAGAACCATGGAAAAGCGGT---GCTGGCCTGCCACCCACAGGCTGCTTCCCTGGGCCCTGGCGCCAGGATATCAGCCTGGATTGCAAGGGCTCCCCGGAAGAGACTGAGGCTCGGGCCTGGACTGTGTACTACTACGGTCTCCTTCAGAGTTGTCTGCAGCAAGCTGGCCTTCCTGAGACCCAGGATCGCAGCCAGGCACCTCGTACAG ttaacccactccctcaagacatctcctaaaacatgtatgggatgttctag---CTTTGCTTAGATCCACTTGGTACGGAGTGGGATTCTAAGGACCTGGATGGAAAGGAAGAGCCATGGAAAAGTGGTGGTGCAGGCTTGCCATCGACAGGCTGCTTCCCTGGGCCCTGGCGACAAGATATCAGCCTGGATTGCAAAGGGTCTCCAGAAGAGGCTGAAGCTCAGGCCTGGACTGTGTACTACTATGGTCTC---CAGAGTTGTCTGCAGCATGCTGGCCTCCCAGAGACCCAGGATCGCAGCCAGGCACCTCATACAGgtgaggacaggtgttacagaacagccccctgaaggactcgaacgaagaaa #### Casp7_ID12089_4 --> 2 - 0 Original Alignment ccTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG cactaaatatcccccagaaacttgatgtccctcccctcctttctttgcagccTTTACGGAGGATCATAGCAACTCTGCCTGCTTTGCTTGTGTCTTGCTGAGCCATGGGGAAGAGGATCTGATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCAGCTCATTTTAGAGGCGACCGATGTAAAATCCTGTTAGAAAAACCCAAACTCTTCTTTATTCATgtgagtttgggggtccataatactgcaaatgggaaaagatgctacagggt Alignment from CESAR ccTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG cactaaatatcccccagaaacttgatgtccctcccctcctttctttgcagccTTTACGGAGGATCATAGCAACTCTGCCTGCTTTGCTTGTGTCTTGCTGAGCCATGGGGAAGAGGATCTGATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCAGCTCATTTTAGAGGCGACCGATGTAAAATCCTGTTAGAAAAACCCAAACTCTTCTTTATTCATgtgagtttgggggtccataatactgcaaatgggaaaagatgctacagggt Alignment from Spaln_aa2Genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG cactaaatatcccccagaaacttgatgtccctcccctcctttctttgcagCCTTTACGGAGGATCATAGCAACTCTGCCTGCTTTGCTTGTGTCTTGCTGAGCCATGGGGAAGAGGATCTGATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCAGCTCATTTTAGAGGCGACCGATGTAAAATCCTGTTAGAAAAACCCAAACTCTTCTTTATTCATgtgagtttgggggtccataatactgcaaatgggaaaagatgctacagggt Alignment from Spaln_nt2Genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG cactaaatatcccccagaaacttgatgtccctcccctcctttctttgcagCCTTTACGGAGGATCATAGCAACTCTGCCTGCTTTGCTTGTGTCTTGCTGAGCCATGGGGAAGAGGATCTGATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCAGCTCATTTTAGAGGCGACCGATGTAAAATCCTGTTAGAAAAACCCAAACTCTTCTTTATTCATgtgagtttgggggtccataatactgcaaatgggaaaagatgctacagggt Alignment from Pairagon CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG cactaaatatcccccagaaacttgatgtccctcccctcctttctttgcagCCTTTACGGAGGATCATAGCAACTCTGCCTGCTTTGCTTGTGTCTTGCTGAGCCATGGGGAAGAGGATCTGATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCAGCTCATTTTAGAGGCGACCGATGTAAAATCCTGTTAGAAAAACCCAAACTCTTCTTTATTCATgtgagtttgggggtccataatactgcaaatgggaaaagatgctacagggt Alignment from Exonerate_protein2genome CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG cactaaatatcccccagaaacttgatgtccctcccctcctttctttgcagCCTTTACGGAGGATCATAGCAACTCTGCCTGCTTTGCTTGTGTCTTGCTGAGCCATGGGGAAGAGGATCTGATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCAGCTCATTTTAGAGGCGACCGATGTAAAATCCTGTTAGAAAAACCCAAACTCTTCTTTATTCATgtgagtttgggggtccataatactgcaaatgggaaaagatgctacagggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTCTGAGGAGGACCACAGCAACTCGGCCTGCTTCGCCTGCGTCCTGCTGAGCCACGGGGAAGAGGACCTGATTTACGGGAAAGATGGCGTGACACCCATAAAGGATCTGACAGCTCATTTTAGGGGAGACCGATGCAAAACCCTGTTAGAGAAACCCAAACTCTTCTTCATTCAG cactaaatatcccccagaaacttgatgtccctcccctcctttctttgcagCCTTTACGGAGGATCATAGCAACTCTGCCTGCTTTGCTTGTGTCTTGCTGAGCCATGGGGAAGAGGATCTGATTTATGGGAAAGATGGTGCAACTCCCATAAAGGACCTATCAGCTCATTTTAGAGGCGACCGATGTAAAATCCTGTTAGAAAAACCCAAACTCTTCTTTATTCATgtgagtttgggggtccataatactgcaaatgggaaaagatgctacagggt #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGggtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGg gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGggtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Pairagon AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAG---TCAAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgagtactacagcctgtgtcactgaacttgttgggtttgtcttttcagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTTTGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGGAATACTTTTATGACCCATCAAATAACCTGGgtaagtggatacaggtgatttgggatggtcagggtacacacaatctacaa #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGggtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAg atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGggtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg Alignment from GeneWise CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTCTGACAGATCTCAACAAAGCAG atacacccaggagcagaatcccagattcgcctctctttcttcccccacagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCTGACAGAACTCAATAAGGCGGgtgagtattggtcttcaatctgccctctacttactccctagagtagcagg #### Cbwd1_ID5361_7 --> 0 - 2 Original Alignment CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAAGCT---ACTag tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAaggtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga Alignment from CESAR CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAAGCT---ACTag tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAaggtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga Alignment from Spaln_aa2Genome CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAA---GCTACTAG tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAAGgtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga Alignment from Spaln_nt2Genome CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAAGCT---ACTAG tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAAGgtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga Alignment from Pairagon CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAAGCT---ACTAG tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAAGgtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga Alignment from Exonerate_protein2genome CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAA---GCTACTAG tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAAGgtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga Alignment from Exonerate_coding2genome CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAA---GCTACTAG tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAAGgtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga Alignment from GeneWise CATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGAAGCTACTAGG-- tttggtctatattgtgttgtatcagaatactggcacctcttttctcctagCATTTAACTGAAGAAAAGCCTGATGGCCTTGTCAATGAAGCTGCGACAAGgtaatgaccattcacacttgacatacaaagaagtggagggaacattaaga #### Cbwd1_ID5365_5 --> 2 - 1 Original Alignment gtGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATg gtactctttgaaacaggtttcttgaatgctttccacctataccattctaggtGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATggtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt Alignment from CESAR gtGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATg gtactctttgaaacaggtttcttgaatgctttccacctataccattctaggtGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATggtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt Alignment from Spaln_aa2Genome GTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATG gtactctttgaaacaggtttcttgaatgctttccacctataccattctagGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATGgtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt Alignment from Spaln_nt2Genome GTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATG gtactctttgaaacaggtttcttgaatgctttccacctataccattctagGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATGgtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt Alignment from Pairagon GTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATG gtactctttgaaacaggtttcttgaatgctttccacctataccattctagGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATGgtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt Alignment from Exonerate_protein2genome GTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATG gtactctttgaaacaggtttcttgaatgctttccacctataccattctagGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATGgtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt Alignment from Exonerate_coding2genome GTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATG gtactctttgaaacaggtttcttgaatgctttccacctataccattctagGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATGgtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt Alignment from GeneWise GTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATG gtactctttgaaacaggtttcttgaatgctttccacctataccattctagGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATCTATCTTGATGgtgagctcccacaagccttctttgagtgtttcatgcttcactgcccctgt #### Cbwd1_ID5369_2 --> 2 - 1 Original Alignment gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg atcttgttcaacctgtacagcctctgtaaccccattttctttttctacaggtGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta Alignment from CESAR gtGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAg atcttgttcaacctgtacagcctctgtaaccccattttctttttctacaggtGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAggtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta Alignment from Spaln_aa2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG atcttgttcaacctgtacagcctctgtaaccccattttctttttctacagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta Alignment from Spaln_nt2Genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG atcttgttcaacctgtacagcctctgtaaccccattttctttttctacagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta Alignment from Pairagon GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG atcttgttcaacctgtacagcctctgtaaccccattttctttttctacagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta Alignment from Exonerate_protein2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG atcttgttcaacctgtacagcctctgtaaccccattttctttttctacagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta Alignment from Exonerate_coding2genome GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG atcttgttcaacctgtacagcctctgtaaccccattttctttttctacagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta Alignment from GeneWise GTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCAGTGATTTTAAATGAATTTGGAGAAG atcttgttcaacctgtacagcctctgtaaccccattttctttttctacagGTGCTGGAAAGACAACACTCCTGAACTACTTCTTGTCAGAACAACATAATAGAAAGATAGCAGTGATTTTAAATGAATTTGGAGAAGgtatgaaaagggtagagctcaatgagtgtaagcttgaggtagttccggta #### Ccdc147_ID10400_2 --> 0 - 0 Original Alignment GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatcaacagGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt Alignment from CESAR GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatcaacagGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt Alignment from Spaln_aa2Genome GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatcaacagGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt Alignment from Spaln_nt2Genome GACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatcaacagGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt Alignment from Pairagon AGGACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatcaacAGGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt Alignment from Exonerate_protein2genome GAGGACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatcaaCAGGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt Alignment from Exonerate_coding2genome GAGGACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatcaaCAGGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt Alignment from GeneWise ACGGAGGACAAGGCTGAAAAAGTAATGCCGGAGGAAACTGCATTTGAAGAAATCGAGAAAGATTTTCAGGAGGTTCTCAGCGAACTTTCAGGAGACAAAAGTCTGGAAAAATTCAGGACCGAATATGAGAAACTTCACTCCATCATGAAAAAGTCTTACGAGAATGAGAAGCGTCTCATGGCCAAGTGCAGAGAGCTGAACGCAGAGATTGTGGTGAACTCGGCCAAGGTTGCCACAGCTCTGAAGCTCTCTCAGGACGACCAGACCACCATCGCATCCCTTAAGAAG cagcagtgctctcctgtatcaaggagcatggttttcactgtcatCAACAGGACAAGGCTGAAGAGGCAATGCCACAGGAGACTGCGTTTGAAGAGATTGAGAAGGATTTTCAGGAAGTTCTTAGTGAGCTTTCTGGGGACAAAAGTTTGGGGAAGTTCAGGACTGAATATGAGAAACTCCATTCTATCATGAAAAAGTCGTATGAGAACGAGAAGTGTCTCATGGCCAAGTGCAGAGAGCTGAATGTAGAAAATGTAGTCAAGTCAGCCAAAGTGGCCACAGCTTTGAAACTCCCTCAGGATGACCAACCCACTATTGCATCCCTTAAGAAGgtaaaccttacaaaaacatatagaattgcatttatcatgtcactccatgt #### Ccdc147_ID10409_8 --> 2 - 0 Original Alignment agGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagagGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc Alignment from CESAR agGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagagGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc Alignment from Spaln_aa2Genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagAGGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc Alignment from Spaln_nt2Genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagAGGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc Alignment from Pairagon AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagAGGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc Alignment from Exonerate_protein2genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagAGGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc Alignment from Exonerate_coding2genome AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagAGGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc Alignment from GeneWise AGGTGGAGTCTTCAAAGAAGCAAGCGGAGCTTGATAAGAAGGCAATGGAGGAGCTTCTGAGAGAGAGAGACATACTGAACAAG gaccagtcctggaattcattccattacctaccctgcttctccctctttagAGGTGAAGTCGTCAAAGAAGCAAGCAGAACTTGATAAGAAGGCAATGGAGGAGCTTTTGAGAGAGAGAGACATACTGAACAAGgtgagctcatttcagcgcggagacacaagaccttctactcactatctggc #### Ccdc147_ID10412_9 --> 0 - 0 Original Alignment AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct Alignment from CESAR AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct Alignment from Spaln_aa2Genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct Alignment from Spaln_nt2Genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct Alignment from Pairagon AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct Alignment from Exonerate_protein2genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct Alignment from Exonerate_coding2genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct Alignment from GeneWise AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatgcacagttctctcctgtgtcagAATATGCTCAAAGCTGTAAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAAGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAAAAAGAACGGGACCGGTATATCAACAAGGCAAGCGACCTCACCCAGAGGgtaagtcacatattcatgctgttgtaaatggacagcagtgccagagatct #### Ccdc147_ID10428_15 --> 0 - 0 Original Alignment GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact Alignment from CESAR GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact Alignment from Spaln_aa2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact Alignment from Spaln_nt2Genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact Alignment from Pairagon GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact Alignment from Exonerate_protein2genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact Alignment from Exonerate_coding2genome GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact Alignment from GeneWise GCCAGCGACCCTAGCACCTTCGAGCTGATCCAGAAAATCCACACCCTGCAGAAGCGACTCATCAGCAAGACGGAAGAGGTGGTGGAAAAAGAGCTGCTTCTTCAG acacagactggcttgacacagatctattccacacactgtatctcttccagGCCAGTGACCCTAGCACCTTTGAGCTTAACCAGAAAATCCACACCCTCCAGGAGCAACCCATAAGTAAGACGGAAGAGGTGGTGGAAAAGAAGCTGCTTCTCCAGgtacgcatttatgggctgggttctggggttgcatcatggtctcttggact #### Ccdc172_ID12718_2 --> 2 - 0 Original Alignment taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac Alignment from CESAR taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac Alignment from Spaln_aa2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac Alignment from Spaln_nt2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac Alignment from Pairagon TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac Alignment from Exonerate_protein2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac Alignment from Exonerate_coding2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac Alignment from GeneWise TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG attgctaagatgctgttttgaggtagttttatctttgtttaccttcccagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtaaggatgctaatactgtagcttatatttggggactacttactgtctac #### Ccdc172_ID12722_3 --> 0 - 0 Original Alignment GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc Alignment from CESAR GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc Alignment from Spaln_aa2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc Alignment from Spaln_nt2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc Alignment from Pairagon GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc Alignment from Exonerate_protein2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc Alignment from Exonerate_coding2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc Alignment from GeneWise GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC tctgagtagctaagcccacatatttgcaccagagactacctgtcccccagGTACAGCAGTTGTCTGAGAAGTCTTTCCTCTCAGAGCTTCTGAAAACTCATGAGAACACTTTGGAGAGACATCTCAGCGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtaaggctctgaccacaaatagatagtatctacagtcactaaaaagcatc #### Ccdc172_ID12725_5 --> 2 - 1 Original Alignment aaATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAg gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagaaATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGggtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta Alignment from CESAR aaATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAg gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagaaATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGggtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta Alignment from Spaln_aa2Genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagAAATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGGgtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta Alignment from Spaln_nt2Genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagAAATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGGgtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta Alignment from Pairagon AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagAAATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGGgtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta Alignment from Exonerate_protein2genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagAAATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGGgtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta Alignment from Exonerate_coding2genome AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagAAATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGGgtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta Alignment from GeneWise AAATGAAGTCGGTGGAACGTAACCGTGGACAGTTATGGGAACTCCAAAAACTAAAAAATGAACTGTTACAAGAATTATTTACTCTCCAGAAAAAGCTTAAAG gaatcctgtgcagcacttgagaacttagtagtcatgtattgtgcctccagAAATGAAGCCAGCGGAGCGTAATCGTGGACAGTTAAGGGAACTCCAAAAGCTAAAAAACAAACTATTAAAAGAGCTATTTGCTCTCCAGAAGAAGCTTAAGGgtgagagctttacttgcccgcttgtcctgattaacacatcattgtgtgta #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagcaTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagcaTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCA---ACATAT------GGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACATATG---------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagaGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagaGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from Exonerate_coding2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG ggacaggctctaccagttggaggaaatcaaaagctctcttctccccttagAGAAGAGAAGGCTGAGCAGCTACTAGACTCCCATGCAGAGGTCCAG---TTGGATGCTGAAATTCGTAGACTTCGCCAGGAGgtctgttccatcttcctttgctaatacagcccccacaacactccatattg #### Ccdc88b_ID1843_6 --> 0 - 0 Original Alignment TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct Alignment from CESAR TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct Alignment from Spaln_aa2Genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct Alignment from Spaln_nt2Genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct Alignment from Pairagon TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct Alignment from Exonerate_protein2genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct Alignment from Exonerate_coding2genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct Alignment from GeneWise TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctgtgtggcggacctctgtgtggtaatttggccttgacgctggaccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAGgtaagttagtagcaatgccatctgtgggcttggtttagtttagtctctct #### Ccdc88b_ID1844_5 --> 2 - 0 Original Alignment aaGAGGCAGTGGAC------------------------------------------------------GAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTATTGGGGGCTTCAATACAGGTGAAAAGGAAGCTCGAAAGCATTCTTAGGTTGCTGTTAGGGGCTTCAGTACGGgtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg Alignment from CESAR aaGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcattcttaggttgctgttaggggcttcagtacgggtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg Alignment from Spaln_aa2Genome AAGAGGCAGTGGACGA G---CTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagAGGAGGCAGTGGATGAgctagagagcatcctgcggttgttattgggggcttcaatacaggtgaaaagGAAGCTCGAAAGCATTCTTAGGTTGCTGTTAGGGGCTTCAGTACGGgtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg Alignment from Spaln_nt2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcattcttaggttgctgttaggggcttcagtacgggtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg Alignment from Pairagon AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcattcttaggttgctgttaggggcttcagtacgggtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg Alignment from Exonerate_protein2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcattcttaggttgctgttaggggcttcagtacgggtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg Alignment from Exonerate_coding2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcattcttaggttgctgttaggggcttcagtacgggtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg Alignment from GeneWise AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG atatatcctcatcttgttcttttgctcggatgactgctttgccgtttcagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGCGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagctcgaaagcattcttaggttgctgttaggggcttcagtacgggtaaactggggaaagagactggagttcagacagaaagtgagacccctgtg #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg #### Ccnj_ID8040_2 --> 0 - 1 Original Alignment GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAGCAG---CTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAa taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAagtacttgtctattggttttagggaaattgacacatccaatttattccctg Alignment from CESAR GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATT---CAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAa taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAagtacttgtctattggttttagggaaattgacacatccaatttattccctg Alignment from Spaln_aa2Genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATT---CAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAAgtacttgtctattggttttagggaaattgacacatccaatttattccctg Alignment from Spaln_nt2Genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTC---AGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAAgtacttgtctattggttttagggaaattgacacatccaatttattccctg Alignment from Pairagon GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCAT---TCAGCAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAAgtacttgtctattggttttagggaaattgacacatccaatttattccctg Alignment from Exonerate_protein2genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAAgtacttgtctattggttttagggaaattgacacatccaatttattccctg Alignment from Exonerate_coding2genome GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAAgtacttgtctattggttttagggaaattgacacatccaatttattccctg Alignment from GeneWise GAGCTGAAGCTGCCTTCTTACAAGGGCCAATCTCCTCAGCTGAACCTCAGGCGGTATTTTGCTGATTTGATTGCCATTGTGAGCAATCGCTTCACCCTCTGCCCCCCTGCCCGCCATCTCGCCGTCTACCTGCTGGACCTGTTCATGGACCGCTATGACATCTCCATTCAG---CAGCTACACTTAGTTGCGCTTTCCTGTCTGCTTCTAGCAA taccctgaatatatatcagatcattagtgattcattcatatgcattatagGAGCTGAAACTTCCCTCATACAGGGGCCAGTCTCCACAGCTGAACCTAACGTGCTATTTTGCTGATTTGATTGCCATAGTGAGCAATCGCTTTACCCTTTGCCCCCCGGCCCGTCATCTTGCTGTCTACCTGTTGGATCTATTCATGGACCGCTATGACATTTCCATTCGTCATCAACTACACTTAGTAGCACTCTCTTGTCTTCTTTTAGCAAgtacttgtctattggttttagggaaattgacacatccaatttattccctg #### Cd5_ID2993_5 --> 2 - 1 Original Alignment ctCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGGGGTGGC---ACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTg aacaggtcacattgagcacaacacattctcttctctattggcttctatagctCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTggtgagtagacttggaccacaccctataagggctaccctataagggctttc Alignment from CESAR ctCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTg aacaggtcacattgagcacaacacattctcttctctattggcttctatagctCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTggtgagtagacttggaccacaccctataagggctaccctataagggctttc Alignment from Spaln_aa2Genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgagcacaacacattctcttctctattggcttctatagCTCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagacttggaccacaccctataagggctaccctataagggctttc Alignment from Spaln_nt2Genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgagcacaacacattctcttctctattggcttctatagCTCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagacttggaccacaccctataagggctaccctataagggctttc Alignment from Pairagon CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgagcacaacacattctcttctctattggcttctatagCTCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagacttggaccacaccctataagggctaccctataagggctttc Alignment from Exonerate_protein2genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgagcacaacacattctcttctctattggcttctatagCTCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagacttggaccacaccctataagggctaccctataagggctttc Alignment from Exonerate_coding2genome CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGG---GGTGGCACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgagcacaacacattctcttctctattggcttctatagCTCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagacttggaccacaccctataagggctaccctataagggctttc Alignment from GeneWise CTCCTCCCAGATTGCAGCTGGTGCCAGGACACGAAGGCCTGAGGTGCACAGGTGTGGTGGAATTCTACAATGGCAGCTGGGGTGGC---ACCATCCTCTACAAGGCCAAGGACAGGCCCCTGGGCCTGGGGAACCTCATCTGTAAGTCTCTGCAGTGTGGCTCTTTCTTGACACATCTGTCCGGGACAGAGGCAGCAGGGACACCAGCTCCTGCAGAGCTGAGGGACCCCAGGCCCTTGCCAATTCGATGGGAGGCCCCGAACGGGAGCTGTGTCTCACTACAGCAGTGCTTCCAGAAAACAACGGCCCAGGAGGGCGGCCAGGCGCTCACCGTCATCTGCTCTG aacaggtcacattgagcacaacacattctcttctctattggcttctatagCTCCTCCTCGAGTGCAATTAGTGCCAGGGCATGAGGACCTGAGGTGCACAGGTGTGGTGGAGTTCTACAATGACAGCTGGGGAGGTGGTACCATCCTCTACAAGGCCAAGGACAGGCCCCTGAGACTTGGTAAACTCATCTGTAAGTCTCTGCAGTGTGGCACATTCCTGACACACCTATCTGGGACAGAGGCCCCAAGAACACCAGCTCCAGCAGAACTGAGGGTCCCCAGGCCCTTGCCAGTTCGGTGGGAGGCCCCAAATGGGAGCTGTCTCTCACTACACCAGTGCTTTCAGAAAACAACGGCCCAGGAGGGTAGCCAGGCTTTAACTGTCATCTGTTCTGgtgagtagacttggaccacaccctataagggctaccctataagggctttc #### Cd6_ID3012_12 --> 2 - 1 Original Alignment ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtacagttgagttcctggcaaagaatatcttctattgctgttcctcagggCCCTCAGCTGAC------------ACCTCATCTGGAGAGTGGTACCAGAATTCCCAGCCACCACCACAGCATCCACCAGCAGAGCAGTTTGAATGTCCAggtaagtgcattcaggcatggaccacagagaaagcaggtatgaacaaaatc Alignment from CESAR ggCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAg atgtacagttgagttcctggcaaagaatatcttctattgctgttcctcagggCCCTCAGCTGAC------------ACCTCATCTGGAGAGTGGTACCAGAATTCCCAGCCACCACCACAGCATCCACCAGCAGAGCAGTTTGAATGTCCAggtaagtgcattcaggcatggaccacagagaaagcaggtatgaacaaaatc Alignment from Spaln_aa2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtacagttgagttcctggcaaagaatatcttctattgctgttcctcagGGCCCTCAGCTGAC------------ACCTCATCTGGAGAGTGGTACCAGAATTCCCAGCCACCACCACAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgcattcaggcatggaccacagagaaagcaggtatgaacaaaatc Alignment from Spaln_nt2Genome GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtacagttgagttcctggcaaagaatatcttctattgctgttcctcagGGCCCTCAGCTGA------------CACCTCATCTGGAGAGTGGTACCAGAATTCCCAGCCACCACCACAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgcattcaggcatggaccacagagaaagcaggtatgaacaaaatc Alignment from Pairagon GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtacagttgagttcctggcaaagaatatcttctattgctgttcctcagGGCCCTCAGCTGA------------CACCTCATCTGGAGAGTGGTACCAGAATTCCCAGCCACCACCACAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgcattcaggcatggaccacagagaaagcaggtatgaacaaaatc Alignment from Exonerate_protein2genome CTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtacagttgagttcctggcaaagaatatcttctattgctgTTCCTCAGGGCCCTCAGCTGACACCTCATCTGGAGAGTGGTACCAGAATTCCCAGCCACCACCACAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgcattcaggcatggaccacagagaaagcaggtatgaacaaaatc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG atgtacagttgagttcctggcaaagaatatcttctattgctgttcctcagGGCCCTCAGCTGAC------------ACCTCATCTGGAGAGTGGTACCAGAATTCCCAGCCACCACCACAGCATCCACCAGCAGAGCAGTTTGAATGTCCAGgtaagtgcattcaggcatggaccacagagaaagcaggtatgaacaaaatc #### Cd6_ID3013_11 --> 2 - 1 Original Alignment gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg agattagggccaaacagatagtcccactttctcctctctcttgtcctcagaaCTGGAAGAGCTGCATGTTTCCCATATCTCAGCAGCTGACCCCAGACCTTGTGTAGCTGATGTCCCCCCTCGGGGCTCACAGTACCATGTAAGTAACAACAGTGACTCCAGCACTTCA---------------TGCAATGATCCGAGCAGCAAGCCACCTCCATGGAATTCCCAGGTTTTCTACTCCCAGAAGAGTCCTCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCTGCAGTCTTTTCGggtgagtatgtatcctattcagggcatcaactctctgtgtaaactactcat Alignment from CESAR gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg agattagggccaaacagatagtcccactttctcctctctcttgtcctcagaaCTGGAAGAGCTGCATGTTTCCCATATCTCAGCAGCTGACCCCAGACCTTGTGTAGCTGATGTCCCCCCTCGGGGCTCACAGTACCATGTAAGTAACAACAGTGACTCCAGCACTTCA---------------TGCAATGATCCGAGCAGCAAGCCACCTCCATGGAATTCCCAGGTTTTCTACTCCCAGAAGAGTCCTCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCTGCAGTCTTTTCGggtgagtatgtatcctattcagggcatcaactctctgtgtaaactactcat Alignment from Spaln_aa2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG agattagggccaaacagatagtcccactttctcctctctcttgtcctcagAACTGGAAGAGCTGCATGTTTCCCATATCTCAGCAGCTGACCCCAGACCTTGTGTAGCTGATGTCCCCCCTCGGGGCTCACAGTACCATGTAAGTAACAACAGTGACTCCAGCACTTCA---------------TGCAATGATCCGAGCAGCAAGCCACCTCCATGGAATTCCCAGGTTTTCTACTCCCAGAAGAGTCCTCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCTGCAGTCTTTTCGGgtgagtatgtatcctattcagggcatcaactctctgtgtaaactactcat Alignment from Spaln_nt2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG agattagggccaaacagatagtcccactttctcctctctcttgtcctcagAACTGGAAGAGCTGCATGTTTCCCATATCTCAGCAGCTGACCCCAGACCTTGTGTAGCTGATGTCCCCCCTCGGGGCTCACAGTACCATGTAAGTAACAACAGTGACTCCAGCACTTC---------------ATGCAATGATCCGAGCAGCAAGCCACCTCCATGGAATTCCCAGGTTTTCTACTCCCAGAAGAGTCCTCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCTGCAGTCTTTTCGGgtgagtatgtatcctattcagggcatcaactctctgtgtaaactactcat Alignment from Pairagon GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG agattagggccaaacagatagtcccactttctcctctctcttgtcctcagAACTGGAAGAGCTGCATGTTTCCCATATCTCAGCAGCTGACCCCAGACCTTGTGTAGCTGATGTCCCCCCTCGGGGCTCACAGTACCATGTAAGTAACAACAGTGACTCCAGCACTTC---------------ATGCAATGATCCGAGCAGCAAGCCACCTCCATGGAATTCCCAGGTTTTCTACTCCCAGAAGAGTCCTCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCTGCAGTCTTTTCGGgtgagtatgtatcctattcagggcatcaactctctgtgtaaactactcat Alignment from Exonerate_protein2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG agattagggccaaacagatagtcccactttctcctctctcttgtcctcagAACTGGAAGAGCTGCATGTTTCCCATATCTCAGCAGCTGACCCCAGACCTTGTGTAGCTGATGTCCCCCCTCGGGGCTCACAGTACCATGTAAGTAACAACAGTGACTCCAGCACTTCA---------------TGCAATGATCCGAGCAGCAAGCCACCTCCATGGAATTCCCAGGTTTTCTACTCCCAGAAGAGTCCTCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCTGCAGTCTTTTCGGgtgagtatgtatcctattcagggcatcaactctctgtgtaaactactcat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG agattagggccaaacagatagtcccactttctcctctctcttgtcctcagAACTGGAAGAGCTGCATGTTTCCCATATCTCAGCAGCTGACCCCAGACCTTGTGTAGCTGATGTCCCCCCTCGGGGCTCACAGTACCATGTAAGTAACAACAGTGACTCCAGCACTTCA---------------TGCAATGATCCGAGCAGCAAGCCACCTCCATGGAATTCCCAGGTTTTCTACTCCCAGAAGAGTCCTCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCTGCAGTCTTTTCGGgtgagtatgtatcctattcagggcatcaactctctgtgtaaactactcat #### Cd6_ID3016_8 --> 2 - 1 Original Alignment ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg caaaaaaactgtagtggctatgcaaaactctcgccctttttatcctctagctGTCCCGGCTTCTGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAggtatccactcacacaacacatgggggaaacaaaacagggagagtgtaggg Alignment from CESAR ccCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAg caaaaaaactgtagtggctatgcaaaactctcgccctttttatcctctagctGTCCCGGCTTCTGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAggtatccactcacacaacacatgggggaaacaaaacagggagagtgtaggg Alignment from Spaln_aa2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG caaaaaaactgtagtggctatgcaaaactctcgccctttttatcctctagCTGTCCCGGCTTCTGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtatccactcacacaacacatgggggaaacaaaacagggagagtgtaggg Alignment from Spaln_nt2Genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG caaaaaaactgtagtggctatgcaaaactctcgccctttttatcctctagCTGTCCCGGCTTCTGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtatccactcacacaacacatgggggaaacaaaacagggagagtgtaggg Alignment from Pairagon CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG caaaaaaactgtagtggctatgcaaaactctcgccctttttatcctctagCTGTCCCGGCTTCTGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtatccactcacacaacacatgggggaaacaaaacagggagagtgtaggg Alignment from Exonerate_protein2genome CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG caaaaaaactgtagtggctatgcaaaactctcgccctttttatcctctagCTGTCCCGGCTTCTGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtatccactcacacaacacatgggggaaacaaaacagggagagtgtaggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG caaaaaaactgtagtggctatgcaaaactctcgccctttttatcctctagCTGTCCCGGCTTCTGTGAACCACCAGCAACTGTCAACTGCAAACCAGGCAGGAATCAATAACTATCATCCTGCCCCTATCACCATTGCCAAAGAAGgtatccactcacacaacacatgggggaaacaaaacagggagagtgtaggg #### Cd6_ID3018_6 --> 2 - 1 Original Alignment gcTCCCAGAGACATCTCAATCTGTCTACTTCT---GAAGTGCCTTCCAGAGTTCCAGTCACGATAg aaagaagaaagaaagctggcaataagtatgccttccttatttttttccaggcTCCCAT------ATCAACCTCTCTATGTCGTCTGAAGTACCTTCCAGAGTTCCAGTCATGATAggtaggtccttccttgtcattacaggtgtttatgtgagtccatgcaacagc Alignment from CESAR gcTCCCAGAGACATCTCAATCTGTCT---ACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAg aaagaagaaagaaagctggcaataagtatgccttccttatttttttccaggcTCC------CATATCAACCTCTCTATGTCGTCTGAAGTACCTTCCAGAGTTCCAGTCATGATAggtaggtccttccttgtcattacaggtgtttatgtgagtccatgcaacagc Alignment from Spaln_aa2Genome GCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aaagaagaaagaaagctggcaataagtatgccttccttatttttttccagGCTCCCATATCAACCTCTCTATGTCG---TCTGAAGTACCTTCCAGAGTTCCAGTCATGATAGgtaggtccttccttgtcattacaggtgtttatgtgagtccatgcaacagc Alignment from Spaln_nt2Genome GCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aaagaagaaagaaagctggcaataagtatgccttccttatttttttccagGCTCCCATATCAACCTCTCTATGT---CGTCTGAAGTACCTTCCAGAGTTCCAGTCATGATAGgtaggtccttccttgtcattacaggtgtttatgtgagtccatgcaacagc Alignment from Pairagon GCTCCCAGAGACATCTCAATCTGTCTA---CTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aaagaagaaagaaagctggcaataagtatgccttccttatttttttccagGCTCC------CATATCAACCTCTCTATGTCGTCTGAAGTACCTTCCAGAGTTCCAGTCATGATAGgtaggtccttccttgtcattacaggtgtttatgtgagtccatgcaacagc Alignment from Exonerate_protein2genome GCTCCCAGAGACATCTCAATCTGTCTACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aaagaagaaagaaagctggcaataagtatgccttccttatttttttccagGCTCCCATATCAACCTCTCTATGTCG---TCTGAAGTACCTTCCAGAGTTCCAGTCATGATAGgtaggtccttccttgtcattacaggtgtttatgtgagtccatgcaacagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCCCAGAGACATCTCAATCTGTCT---ACTTCTGAAGTGCCTTCCAGAGTTCCAGTCACGATAG aaagaagaaagaaagctggcaataagtatgccttccttatttttttccagGCTCC------CATATCAACCTCTCTATGTCGTCTGAAGTACCTTCCAGAGTTCCAGTCATGATAGgtaggtccttccttgtcattacaggtgtttatgtgagtccatgcaacagc #### Cd6_ID3019_5 --> 2 - 1 Original Alignment agCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAg caggatttggctcaacctatgtagctagtgccctacctgtcattctgcagagCACCAATCTTGGCGCCTGTCTGGAGGCATTGACTCCTGTGAAGGGCAAGTAGAAGTGTACTTCCGAGGTGTCTGGAGCACAGTGTGTGACAGTGAGTGGTACCCATCTAAGGCTAAGGTGCTCTGTCGCTCCTTGGGTTGTGGATCAGCAGTGACACGGCCCAGGGGGCTGCCACACTGCCTGGATGGTAGAATGTACTACCCTTGCAAAGGACAGCAGCCTGCACTCAGCACTTGTTCCTGGCAATTTAATAACTCC---CTATGCAGTCAGTCACGGGTAGCCAGAGCGGTCTGCTCAggtatgtcttcaacatcctctccagaactaggccaggccaaccgttctacc Alignment from CESAR agCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAg caggatttggctcaacctatgtagctagtgccctacctgtcattctgcagagCACCAATCTTGGCGCCTGTCTGGAGGCATTGACTCCTGTGAAGGGCAAGTAGAAGTGTACTTCCGAGGTGTCTGGAGCACAGTGTGTGACAGTGAGTGGTACCCATCTAAGGCTAAGGTGCTCTGTCGCTCCTTGGGTTGTGGATCAGCAGTGACACGGCCCAGGGGGCTGCCACACTGCCTGGATGGTAGAATGTACTACCCTTGCAAAGGACAGCAGCCTGCACTCAGCACTTGTTCCTGGCAATTTAATAACTCC---CTATGCAGTCAGTCACGGGTAGCCAGAGCGGTCTGCTCAggtatgtcttcaacatcctctccagaactaggccaggccaaccgttctacc Alignment from Spaln_aa2Genome AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG caggatttggctcaacctatgtagctagtgccctacctgtcattctgcagAGCACCAATCTTGGCGCCTGTCTGGAGGCATTGACTCCTGTGAAGGGCAAGTAGAAGTGTACTTCCGAGGTGTCTGGAGCACAGTGTGTGACAGTGAGTGGTACCCATCTAAGGCTAAGGTGCTCTGTCGCTCCTTGGGTTGTGGATCAGCAGTGACACGGCCCAGGGGGCTGCCACACTGCCTGGATGGTAGAATGTACTACCCTTGCAAAGGACAGCAGCCTGCACTCAGCACTTGTTCCTGGCAATTTAATAACTCC---CTATGCAGTCAGTCACGGGTAGCCAGAGCGGTCTGCTCAGgtatgtcttcaacatcctctccagaactaggccaggccaaccgttctacc Alignment from Spaln_nt2Genome AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG caggatttggctcaacctatgtagctagtgccctacctgtcattctgcagAGCACCAATCTTGGCGCCTGTCTGGAGGCATTGACTCCTGTGAAGGGCAAGTAGAAGTGTACTTCCGAGGTGTCTGGAGCACAGTGTGTGACAGTGAGTGGTACCCATCTAAGGCTAAGGTGCTCTGTCGCTCCTTGGGTTGTGGATCAGCAGTGACACGGCCCAGGGGGCTGCCACACTGCCTGGATGGTAGAATGTACTACCCTTGCAAAGGACAGCAGCCTGCACTCAGCACTTGTTCCTGGCAATTTAATAACTCC---CTATGCAGTCAGTCACGGGTAGCCAGAGCGGTCTGCTCAGgtatgtcttcaacatcctctccagaactaggccaggccaaccgttctacc Alignment from Pairagon AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG caggatttggctcaacctatgtagctagtgccctacctgtcattctgcagAGCACCAATCTTGGCGCCTGTCTGGAGGCATTGACTCCTGTGAAGGGCAAGTAGAAGTGTACTTCCGAGGTGTCTGGAGCACAGTGTGTGACAGTGAGTGGTACCCATCTAAGGCTAAGGTGCTCTGTCGCTCCTTGGGTTGTGGATCAGCAGTGACACGGCCCAGGGGGCTGCCACACTGCCTGGATGGTAGAATGTACTACCCTTGCAAAGGACAGCAGCCTGCACTCAGCACTTGTTCCTGGCAATTTAATAACTC---CCTATGCAGTCAGTCACGGGTAGCCAGAGCGGTCTGCTCAGgtatgtcttcaacatcctctccagaactaggccaggccaaccgttctacc Alignment from Exonerate_protein2genome AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG caggatttggctcaacctatgtagctagtgccctacctgtcattctgcagAGCACCAATCTTGGCGCCTGTCTGGAGGCATTGACTCCTGTGAAGGGCAAGTAGAAGTGTACTTCCGAGGTGTCTGGAGCACAGTGTGTGACAGTGAGTGGTACCCATCTAAGGCTAAGGTGCTCTGTCGCTCCTTGGGTTGTGGATCAGCAGTGACACGGCCCAGGGGGCTGCCACACTGCCTGGATGGTAGAATGTACTACCCTTGCAAAGGACAGCAGCCTGCACTCAGCACTTGTTCCTGGCAATTTAATAACTCC---CTATGCAGTCAGTCACGGGTAGCCAGAGCGGTCTGCTCAGgtatgtcttcaacatcctctccagaactaggccaggccaaccgttctacc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCACCAGTCCTGGCGCCTGACTGGAGGCATTGACTCCTGCGAAGGGCAAGTGGAAGTGTACTTCCGGGGTGTCTGGAGCACGGTGTGTGACAGCGAGTGGTACCCATCTGAGGCCAAAGTGCTCTGTCGGTCCTTGGGTTGCGGATCAGCAGTGGCTCGGCCCAGGGGGCTGCCACACTCCCTGGACGGTAGAATGTACTACTCCTGCAAAGGACAGGAGCCCGCCCTCAGCACCTGTTCCTGGCGGTTCAACAACTCCAACCTGTGCAGCCAGTCGCGGGCAGCCAGGGTTGTCTGCTCAG caggatttggctcaacctatgtagctagtgccctacctgtcattctgcagAGCACCAATCTTGGCGCCTGTCTGGAGGCATTGACTCCTGTGAAGGGCAAGTAGAAGTGTACTTCCGAGGTGTCTGGAGCACAGTGTGTGACAGTGAGTGGTACCCATCTAAGGCTAAGGTGCTCTGTCGCTCCTTGGGTTGTGGATCAGCAGTGACACGGCCCAGGGGGCTGCCACACTGCCTGGATGGTAGAATGTACTACCCTTGCAAAGGACAGCAGCCTGCACTCAGCACTTGTTCCTGGCAATTTAATAACTCC---CTATGCAGTCAGTCACGGGTAGCCAGAGCGGTCTGCTCAGgtatgtcttcaacatcctctccagaactaggccaggccaaccgttctacc #### Cdc37l1_ID6199_6 --> 0 - 0 Original Alignment GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta Alignment from CESAR GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta Alignment from Spaln_aa2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta Alignment from Spaln_nt2Genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta Alignment from Pairagon GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta Alignment from Exonerate_protein2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta Alignment from Exonerate_coding2genome GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta Alignment from GeneWise GCGGAGGAAGAAGGTTATTTTGAAGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGCTCCTTAGAATCCTTACCACAG aggggctttttgagtagagtgtgcttctttttcttttctgttttacttagGCAGAGGAAGAGGGTTATTTTGAAGCATTCAAAAATGAACTCGAAGCTTTCAAGTCAAGAGTAAGACTTTACGCTCAATCACAAAGCTTGCAGCCTGTGACAGTTCAGAATCATGTCCCCCATTCTGGTGTTGGATGCATAGGTTCCTTAGAATCCTTACCACAGgtgatgttagaaacttgtgcacagtgatgtacacctgtttggcacatcta #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactcataggtttctttcctctttagGTGGATTCATCAGTTGCTGTAGGGACCCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGATTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtttgtttgtagggctcagggaccccggtattgtggaggttattctgtat #### Cdc42bpg_ID1584_14 --> 0 - 0 Original Alignment CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from CESAR CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Spaln_aa2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Spaln_nt2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Pairagon CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Exonerate_protein2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from Exonerate_coding2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt Alignment from GeneWise CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aaattacatggtgctatcccatgtttcctgaccttaggggctgtccctagCTTGAAGGACAGGTGACAACCCTGAGTGACGTGGTGACTCGGCTGCAGGGACAGTGTAAAGAAGAATCTTCA---GCGAAGgtaagtatagttggtgttctccatgcagcagtctcctacctagaattctt #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTCTGTCAgtatgttgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct Alignment from CESAR GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag GCTTTCTGTCAgtgagctgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAaggtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct Alignment from Spaln_aa2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtatgttgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct Alignment from Spaln_nt2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtatgttgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct Alignment from Pairagon GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtatgttgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct Alignment from Exonerate_protein2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtatgttgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct Alignment from Exonerate_coding2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtatgttgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct Alignment from GeneWise GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTCTGTCAgtatgttgagggggctgctcatgattttctgtttttcagGTACGACAGCCATCATGTGTTCGGTGGGACTGGCAGCGGGTGTATGCTGCTCTCAGTGACTCCCGTTTGTTATTATTTGATGCCCCCGACCCTCGTGGTAGCCTGGCCAGTGGGATCCTTCTTCAGGCCTTAGATCTAAGgtatgtgacaggcccacaggacatagggagtccacaccagggtggtctct #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tctttgacaatagcgatacagtcccatgcctgggtcttcttcccttgcagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCGACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaataatagggatagctcccagtctgcaagttcctgcttgcttcctctt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAggtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG ggacaaggcccctattggggtacttgagagatttaccatttctttttcagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGATCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGAGCGCCTGAAGAGAGgtaatggcaaccatggctaaactgtaacaaaacagtggagtcaggaaagt #### Cep78_ID3982_4 --> 2 - 0 Original Alignment ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagttATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct Alignment from CESAR ttATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagttATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct Alignment from Spaln_aa2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagTTATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct Alignment from Spaln_nt2Genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagTTATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct Alignment from Pairagon TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagTTATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct Alignment from Exonerate_protein2genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagTTATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct Alignment from Exonerate_coding2genome TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagTTATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct Alignment from GeneWise TTATTTGTCAAGGTATAAAGAACTCTGTCACTCTCAAGACCGTCAACTTTACAGGGTGTAATCTGACATGGCAAGGAGCCTGTCATATGGCCAAGATCTTAAAG gtctgtgggcctaatgttcacttggatgtttctgcctttgccctttgcagTTATCTGTCAAGGTATAAAAAACTCTGTTGCTCTCAAAACTGTCAACTTTACAGGGTGTAATCGAACATGGCAAGGAGCCTGTCATATGGCCAAGATCATAAAAgtgagcctgagatatcaaaccttaaagcacattaatactaggtctagcct #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaaggGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAggtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaaggGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAggtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag #### Cnnm1_ID8733_5 --> 0 - 1 Original Alignment GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAg acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAggtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag Alignment from CESAR GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAg acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAggtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag Alignment from Spaln_aa2Genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAGgtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag Alignment from Spaln_nt2Genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAGgtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag Alignment from Pairagon GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAGgtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag Alignment from Exonerate_protein2genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAGgtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag Alignment from Exonerate_coding2genome GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAGgtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag Alignment from GeneWise GGGAAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGCCTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAG acaaatggacttgcatgatcaaaaggtaccccccccccccccccccccagGGGAAGGTGGAGGTAGAAGTTGGTAAGGAAGGTCTTCGGTTTGAGAATGGCACCTTTACTTACTATGGTGTTCCAGCAATCATGACCAGTGCATGCTCAGgtaagttaaatctaaatattaactcgggagtgtgtcagggaagcagtgag #### Cnnm1_ID8739_7 --> 2 - 0 Original Alignment taAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagtaAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact Alignment from CESAR taAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagtaAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact Alignment from Spaln_aa2Genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact Alignment from Spaln_nt2Genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact Alignment from Pairagon TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact Alignment from Exonerate_protein2genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact Alignment from Exonerate_coding2genome TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact Alignment from GeneWise TAAACCGGTCCCCTTCTCGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTCGGCGGAAGCAACACGCAACTGTACAGCAGCAGCAACAACCTCTACACACCTGACTACTCGGTGCACATTCTCAGTGATGTGCAGTTCGTGAAG ctttcctgttttcctttgtcagctcccctgattcgtgttttcttttccagTAAACCGGTCCCCTTCTTGCTGCAGCGGGTTGAATCGCTCCGAGTCTCCAAACCGAGAGCGCAGTGACTTTGGTGGAAGCAACACGCACCTGTACAGCAGCAGCAACAACCTCTACACACCTGACTATTCAGTGCACATTCTCAGTGATGTGCAGTTCGTGAAGgtaagtccccaaagcagagcttataggggactgtgggcaattgggacact #### Cnnm2_ID10029_7 --> 2 - 0 Original Alignment ggGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagggGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat Alignment from CESAR ggGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagggGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat Alignment from Spaln_aa2Genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagGGGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat Alignment from Spaln_nt2Genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagGGGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat Alignment from Pairagon GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagGGGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat Alignment from Exonerate_protein2genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagGGGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat Alignment from Exonerate_coding2genome GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagGGGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat Alignment from GeneWise GGGAAAATAAGTCACCTCCTCGCCCCTGTGGCCTGAATCACTCAGATTCTCTCAGTCGGAGCGACCGGATTGACGCCATGACGCCAACCTTGGGGAGCAGCAACAACCAGCTCAGCTCTTCCTTCCTTCAAGTCTACATCCCTGACTACTCAGTACGAGCCCTCTCTGACCTACAGTTCGTCAAG tacaggatattctacaggagtcttgtttagaattaactgtatgcttttagGGGACAATATGACACCTCCTTGCCCCTGTGGACTGAATCACTCAGATTCTCTCAGTCGCGGTGACCGAACTGATGCAATGACACCAACCCTGGCAAGCAGCAACAACAAGCTTAGCTCTTCATTTCTCCAAGTTTTTCTTCCTGATTATTCGGTCCGAGCCCTCTGTGATCTACAGTTTGTTAAGgtaagatgagagggccacaggcatggacctggcagatcatatgattgaat #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagtaACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAggtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from CESAR aaACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagtaACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAggtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Spaln_nt2Genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Pairagon AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Exonerate_coding2genome AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct #### Col17a1_ID10284_38 --> 2 - 1 Original Alignment ggCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAg ccaaaattttaagggggggagaatcacaatttctaccttgcttttcccagggCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGggtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc Alignment from CESAR ggCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAg ccaaaattttaagggggggagaatcacaatttctaccttgcttttcccagggCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGggtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc Alignment from Spaln_aa2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ccaaaattttaagggggggagaatcacaatttctaccttgcttttcccagGGCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGGgtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc Alignment from Spaln_nt2Genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ccaaaattttaagggggggagaatcacaatttctaccttgcttttcccagGGCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGGgtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc Alignment from Pairagon ----------------------------------------------CCAGGGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG CCAAAATTTTAAGGGGGGGAGAATCACAATTTCTACCTTGCTTTTCCCAGGGCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGGgtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc Alignment from Exonerate_protein2genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ccaaaattttaagggggggagaatcacaatttctaccttgcttttcccagGGCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGGgtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc Alignment from Exonerate_coding2genome GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ccaaaattttaagggggggagaatcacaatttctaccttgcttttcccagGGCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGGgtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc Alignment from GeneWise GGCCTTCCATCCCAGGCCCGCCAGGACCCAGAGGTCCACCAG ccaaaattttaagggggggagaatcacaatttctaccttgcttttcccagGGCCTTCTATTCCAGGCCCACCAGGACCCCGAAGTCCACCGGgtgagcgctgaattttgttaacataggcgggggcaatggctggggtaagc #### Col17a1_ID10288_34 --> 2 - 1 Original Alignment agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttatgataccttcacatggcatgttgactgtgccctttgtctccagaaGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGggtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat Alignment from CESAR agGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAg taggttatgataccttcacatggcatgttgactgtgccctttgtctccagaaGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGggtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat Alignment from Spaln_aa2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgataccttcacatggcatgttgactgtgccctttgtctccagAAGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGGgtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat Alignment from Spaln_nt2Genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgataccttcacatggcatgttgactgtgccctttgtctccagAAGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGGgtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat Alignment from Pairagon AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgataccttcacatggcatgttgactgtgccctttgtctccagAAGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGGgtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat Alignment from Exonerate_protein2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgataccttcacatggcatgttgactgtgccctttgtctccagAAGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGGgtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat Alignment from Exonerate_coding2genome AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgataccttcacatggcatgttgactgtgccctttgtctccagAAGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGGgtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat Alignment from GeneWise AGGGATCATCAACAATCACTGTGCCCGGACCTCCCGGACCTCCTGGTGCCATGGGTCCCCCAGGACCTCCAGGGACGCCAG taggttatgataccttcacatggcatgttgactgtgccctttgtctccagAAGGATCATCAACAATCACTGTACCTGGACCTCCAGGACCTCCTGGTGCCATGGGTCCTCCAGGGCCTCCAGGGACACCGGgtaagtctattctacttttttccaacaaatcagcaacagtttatgtaaat #### Col17a1_ID10289_33 --> 2 - 1 Original Alignment gcGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAg catactcccctggtgccttcttgctgaccacagaaggctttcttacacaggtGAAGCTGGTGCTCCTGGTAGAGTCATGACTGCAggtactggatacaatggatccccctttcggccatctttctcagtggcagtc Alignment from CESAR gcGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAg catactcccctggtgccttcttgctgaccacagaaggctttcttacacaggtGAAGCTGGTGCTCCTGGTAGAGTCATGACTGCAggtactggatacaatggatccccctttcggccatctttctcagtggcagtc Alignment from Spaln_aa2Genome GCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAG catactcccctggtgccttcttgctgaccacagaaggctttcttacacagGTGAAGCTGGTGCTCCTGGTAGAGTCATGACTGCAGgtactggatacaatggatccccctttcggccatctttctcagtggcagtc Alignment from Spaln_nt2Genome GCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAG catactcccctggtgccttcttgctgaccacagaaggctttcttacacagGTGAAGCTGGTGCTCCTGGTAGAGTCATGACTGCAGgtactggatacaatggatccccctttcggccatctttctcagtggcagtc Alignment from Pairagon GCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAG catactcccctggtgccttcttgctgaccacagaaggctttcttacacagGTGAAGCTGGTGCTCCTGGTAGAGTCATGACTGCAGgtactggatacaatggatccccctttcggccatctttctcagtggcagtc Alignment from Exonerate_protein2genome GCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAG catactcccctggtgccttcttgctgaccacagaaggctttcttacacagGTGAAGCTGGTGCTCCTGGTAGAGTCATGACTGCAGgtactggatacaatggatccccctttcggccatctttctcagtggcagtc Alignment from Exonerate_coding2genome GCGAACCCGGCGCTCCCGGCAGAGTCATGACTTCAG catactcccctggtgccttcttgctgaccacagaaggctttcttacacagGTGAAGCTGGTGCTCCTGGTAGAGTCATGACTGCAGgtactggatacaatggatccccctttcggccatctttctcagtggcagtc Alignment from GeneWise catactcccctggtgccttcttgctgaccacagaaggctttcttacacaggtgaagctggtgctcctggtagagtcatgactgcaggtactggatacaatggatccccctttcggccatctttctcagtggcagtc #### Col17a1_ID10295_27 --> 2 - 1 Original Alignment gtGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAg cccatcatttgtaagttttccttggagacttctctttcctattcctctaggtGATCAGGGTGAAAAAGGACCTCGAGGTCTCACTggtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga Alignment from CESAR gtGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAg cccatcatttgtaagttttccttggagacttctctttcctattcctctaggtGATCAGGGTGAAAAAGGACCTCGAGGTCTCACTggtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga Alignment from Spaln_aa2Genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcatttgtaagttttccttggagacttctctttcctattcctctagGTGATCAGGGTGAAAAAGGACCTCGAGGTCTCACTGgtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga Alignment from Spaln_nt2Genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcatttgtaagttttccttggagacttctctttcctattcctctagGTGATCAGGGTGAAAAAGGACCTCGAGGTCTCACTGgtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga Alignment from Pairagon GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcatttgtaagttttccttggagacttctctttcctattcctctagGTGATCAGGGTGAAAAAGGACCTCGAGGTCTCACTGgtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga Alignment from Exonerate_protein2genome GTGACCAGGGTGAGAAGGGACCCAGAGGCCTCACAG cccatcatttgtaagttttccttggagacttctctttcctattcctctagGTGATCAGGGTGAAAAAGGACCTCGAGGTCTCACTGgtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga Alignment from Exonerate_coding2genome cccatcatttgtaagttttccttggagacttctctttcctattcctctaggtgatcagggtgaaaaaggacctcgaggtctcactggtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga Alignment from GeneWise cccatcatttgtaagttttccttggagacttctctttcctattcctctaggtgatcagggtgaaaaaggacctcgaggtctcactggtaagcgctaccaaggcattaaaccttttccatgacctgcagttaccaga #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacaggtGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAggtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAg tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacaggtGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAggtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtgaattagggggggaggggcaattaaatgttgtggggaccctcattcaa Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGTGACCAGGGTGAG tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAGGTGAATTAGGGGGGGAGGGGCAATTAAATGTTGTGGGGACCCTCATTCAA Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGA------------------CTCATGGGACCACCAGGACCC tacgctgcatgatgggaatgtaggctagtgaggggaagtcctttcaacagGTGCTGTGGGGACCCAGGGACTTCGGGGTGATGTGGGACTGCCTGGTGTGAAAGGTGAATTAGGGGGGGAGGGGCAATTAAATGTTGTGGGGACCCTCATTCAA #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcaggaGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAggtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcaggaGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAggtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcagGAGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAGgtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcagGAGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAGgtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcagGAGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAGgtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcagGAGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAGgtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcagGAGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAGgtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgcttttacatctttcttgaatgtggtatttccccccctcagGAGATCCTGGCATGGAGGGACCCATAGGCCAGAGAGGGCTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGGTCTGGGGAGAAAGGAGACCAAGgtatgtgctaccgtcaacaccataagggtgacctgcatccattcattttc #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcaggtATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTggtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from CESAR gtATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcaggtATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTggtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Pairagon GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG atacaacatcaagaggaaatcagagtggtgacgttatctttttcctgcagGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa Alignment from GeneWise TCAAGGACCTAAAGGAGACCGA--GGCCTTCCTGGGACCCCAGGTATCCCTGGGCCCCTGGGCCACCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG catcaagAGGAAATCAGAGTGGTGACGTTATCTTTTTCCTGCA------GGTATCCCTGGGCCATTGGGCCACCCTGGCCCAGAAGGGCCAAAGGGACAGAAAGGCAGCATTGgtcagtgctcttgtctatctatatgtgtccccttgtgtttcccttccaaa #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct #### Col17a1_ID10310_12 --> 2 - 1 Original Alignment caTACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCa gactcttgctagttggctgataatttccatatccctaccctggtctttagcaTATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCagtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg Alignment from CESAR caTACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCa gactcttgctagttggctgataatttccatatccctaccctggtctttagcaTATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCagtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg Alignment from Spaln_aa2Genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA gactcttgctagttggctgataatttccatatccctaccctggtctttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCAgtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg Alignment from Spaln_nt2Genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA gactcttgctagttggctgataatttccatatccctaccctggtctttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCAgtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg Alignment from Pairagon CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA gactcttgctagttggctgataatttccatatccctaccctggtctttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCAgtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg Alignment from Exonerate_protein2genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA gactcttgctagttggctgataatttccatatccctaccctggtctttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCAgtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg Alignment from Exonerate_coding2genome CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA gactcttgctagttggctgataatttccatatccctaccctggtctttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCAgtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg Alignment from GeneWise CATACGGAGCGAAGAAAAACGTGCCCCAGCCTCCCACTGTCACCAGCACCGGCGTGTCCACCTCTGCCA gactcttgctagttggctgataatttccatatccctaccctggtctttagCATATGGGGTGAGGAAAAACATACCCCAGCCTCCTACAGTCTCTAGCACCGTTGTGTCCACCTCTGCCAgtgaggtgtgatactagttactaggacctaggttaggacaaatagagagg #### Col17a1_ID10315_7 --> 2 - 1 Original Alignment agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagaaAGCAAAATACGGGTCAGGTTGCAGAGTGCACCACCATCTACCAGAtgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg Alignment from CESAR agAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAt ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagaaAGCAAAATACGGGTCAGGTTGCAGAGTGCACCACCATCTACCAGAtgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg Alignment from Spaln_aa2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagAAAGCAAAATACGGGTCAGGTTGCAGAGTGCACCACCATCTACCAGATgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg Alignment from Spaln_nt2Genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagAAAGCAAAATACGGGTCAGGTTGCAGAGTGCACCACCATCTACCAGATgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg Alignment from Pairagon AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagAAAGCAAAATACGGGTCAGGTTGCAGAGTGCACCACCATCTACCAGATgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg Alignment from Exonerate_protein2genome AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagAAAGCAAAATACGGGTCAGGTTGCAGAGTGCACCACCATCTACCAGATgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg Alignment from Exonerate_coding2genome ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagaaagcaaaatacgggtcaggttgcagagtgcaccaccatctaccagatgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg Alignment from GeneWise AGAGCGAAATTCGAGTTCGGTTGCAGAGCGCGTCGCCATCCACCAGAT ctcttcattaatgttggagctgggctggtcacctctcttccctgactcagAAAGCAAAATACGGGTCAGGTTGCAGAGTGCACCACCATCTACCAGATgtgagcgagcctcattgtactagcattggagacttttgaaagcttctagg #### Col17a1_ID10320_2 --> 2 - 1 Original Alignment ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagttGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGagtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc Alignment from CESAR ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagttGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGagtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc Alignment from Spaln_aa2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc Alignment from Spaln_nt2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc Alignment from Pairagon TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc Alignment from Exonerate_protein2genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc Alignment from Exonerate_coding2genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc Alignment from GeneWise TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gaaaatgctgtatatggaagtactagatgcttccactttgcatcttccagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgatgagctccctgttgattagtcccatgtgaggactccaacctgcagc #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCaggtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCaggtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG aatagtaaggaagcatttcttcaactgcaccatgcttgctctttcgttagGGTGATTCTAGCATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTAGCAGTCAGCAAGTGTGAAATAGCCAGgtactgacaatcactggggtggttgtatatcagtgtagtaccttaatctt #### Cpeb3_ID7269_8 --> 0 - 1 Original Alignment GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta Alignment from CESAR GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTg gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTggtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta Alignment from Spaln_aa2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta Alignment from Spaln_nt2Genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta Alignment from Pairagon GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta Alignment from Exonerate_protein2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta Alignment from Exonerate_coding2genome GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta Alignment from GeneWise GTGCAAATCCGACCGTGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTG gggtattcaaaatatgaagttagaaccacacctttctctcgtgtgcacagGTGCAAATCCGACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGCTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGgtacaatgaatgacatacagggcaagagcaaaccccaacaacctagctta #### Cpeb3_ID7275_6 --> 2 - 1 Original Alignment atGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAg atttccgaacattactctataattgcactctgggcccttctgccctgcagatGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAggtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga Alignment from CESAR atGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAg atttccgaacattactctataattgcactctgggcccttctgccctgcagatGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAggtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga Alignment from Spaln_aa2Genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG atttccgaacattactctataattgcactctgggcccttctgccctgcagATGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAGgtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga Alignment from Spaln_nt2Genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG atttccgaacattactctataattgcactctgggcccttctgccctgcagATGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAGgtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga Alignment from Pairagon ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG atttccgaacattactctataattgcactctgggcccttctgccctgcagATGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAGgtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga Alignment from Exonerate_protein2genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG atttccgaacattactctataattgcactctgggcccttctgccctgcagATGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAGgtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga Alignment from Exonerate_coding2genome ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG atttccgaacattactctataattgcactctgggcccttctgccctgcagATGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAGgtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga Alignment from GeneWise ATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGACTGGCCTCATAAAGCCGAGAGCAAATCGTACTTCCCTCCTAAAG atttccgaacattactctataattgcactctgggcccttctgccctgcagATGAGATCACTGCTAGCTTTCGCAGGTTTGGACCCCTTGTGGTGGATTGGCCTCATAAAGCTGAGAGCAAAGCATACTTCCCCCCCAAAGgtgaggagtacaaggtgtccccctgtctggcagccataccttgaaggaga #### Cpeb3_ID7277_4 --> 2 - 1 Original Alignment ccAGGAGCTATGGGCGGAGACGAg tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagccAGGAGCTATGGGCGGAGACAAggtgagagcttcttataatgggcttttcctgtctccttattatgattacag Alignment from CESAR ccAGGAGCTATGGGCGGAGACGAg tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagccAGGAGCTATGGGCGGAGACAAggtgagagcttcttataatgggcttttcctgtctccttattatgattacag Alignment from Spaln_aa2Genome CCAGGAGCTATGGGCGGAGACGAG tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagCCAGGAGCTATGGGCGGAGACAAGgtgagagcttcttataatgggcttttcctgtctccttattatgattacag Alignment from Spaln_nt2Genome CCAGGAGCTATGGGCGGAGACGAG tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagCCAGGAGCTATGGGCGGAGACAAGgtgagagcttcttataatgggcttttcctgtctccttattatgattacag Alignment from Pairagon CCAGGAGCTATGGGCGGAGACGAG tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagCCAGGAGCTATGGGCGGAGACAAGgtgagagcttcttataatgggcttttcctgtctccttattatgattacag Alignment from Exonerate_protein2genome CCAGGAGCTATGGGCGGAGACGAG tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagCCAGGAGCTATGGGCGGAGACAAGgtgagagcttcttataatgggcttttcctgtctccttattatgattacag Alignment from Exonerate_coding2genome tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagccaggagctatgggcggagacaaggtgagagcttcttataatgggcttttcctgtctccttattatgattacag Alignment from GeneWise tctgaaattttaagataaaaagtcatgcaccgtgtgctttgtgcttgaagccaggagctatgggcggagacaaggtgagagcttcttataatgggcttttcctgtctccttattatgattacag #### Cpn1_ID8874_6 --> 2 - 0 Original Alignment gaATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagggATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca Alignment from CESAR gaATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagggATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca Alignment from Spaln_aa2Genome GAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagGGATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca Alignment from Spaln_nt2Genome GAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagGGATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca Alignment from Pairagon GAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagGGATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca Alignment from Exonerate_protein2genome GAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagGGATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca Alignment from Exonerate_coding2genome GAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagGGATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca Alignment from GeneWise GAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG aatggcgatgagtaacttgacatggatatattcacttcatttttctctagGGATGCAAGACTTTAATTATCTCCACACTAACTGCTTTGAGATTACGCTCGAGCTGAGTTGTGACAAGTTCCCCCGGCAAGAGGAGCTGCAAAGGGAGTGGCTTGGTAATTGGGAGGCCTTGATCCAGTTTTTGGAACAGgtgacatcttctttctttttaacccttatgactctacagaagacttgcca #### Cpn1_ID8876_4 --> 0 - 0 Original Alignment GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg Alignment from CESAR GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg Alignment from Spaln_aa2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg Alignment from Spaln_nt2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg Alignment from Pairagon GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg Alignment from Exonerate_protein2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg Alignment from Exonerate_coding2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg Alignment from GeneWise GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG gccaatgcctacatcagcagccatcatcaatgtcctggtttcttttacagGTGGAACCAGAGACCCGGGCTGTGATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCCAATTATCCATATGATAAGTCACTTGACCATAGGTTCCAAGGTCCTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaagtaaattagtgctccccagaggagggggttgggccctcagagcagg #### Cpn1_ID8877_3 --> 0 - 0 Original Alignment GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca Alignment from CESAR GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca Alignment from Spaln_aa2Genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca Alignment from Spaln_nt2Genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca Alignment from Pairagon GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGG---GGACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca Alignment from Exonerate_protein2genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca Alignment from Exonerate_coding2genome GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca Alignment from GeneWise GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG tctggcatgtcaatatgacatgtaagcaaatggctgatgttctttctcagGGCCCGAACATGTCTGGGTATTTGGTTGGTAGAAACAATGCAAATGGG---GACCTGAACCGAACCTTCCCAGATCTCAATACCTACTTTTACCACAACTCTAAGAATGGTGGTCCTAACCACCACCTACCCCTCCCAGACAACTGGAAAAGTCAAgtaaggaatgaagatggtaatatgacccaattggatcattatctggaaca #### Cpn1_ID8878_2 --> 2 - 0 Original Alignment tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagtgGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca Alignment from CESAR tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagtgGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca Alignment from Spaln_aa2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca Alignment from Spaln_nt2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca Alignment from Pairagon TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca Alignment from Exonerate_protein2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca Alignment from Exonerate_coding2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca Alignment from GeneWise TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctggatgcccttcagagactgactcttgctctctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGTAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTCACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGAGGTAGCTGCTGCCCTGgtgagcattggagttagatagatgagcccagaacctgtgaatagcattca #### Cpsf7_ID2863_3 --> 0 - 2 Original Alignment TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAgggtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt Alignment from CESAR TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAgg gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAgggtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt Alignment from Spaln_aa2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAGGgtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt Alignment from Spaln_nt2Genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAGGgtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt Alignment from Pairagon TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAGGgtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt Alignment from Exonerate_protein2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAGGgtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt Alignment from Exonerate_coding2genome TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAGGgtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt Alignment from GeneWise TGGACCACAGACCAGCAGCTGATCCAGGTTATCCGCTCTATAGGAGTCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCAAATGGCCAGTCTAAAGG gaaggccatgcagcactagattcaatcactgatgtcacctttctcctcagTGGACTACAGATCAGCAACTGATTCAGGTTATCCGCTCTATAGGCATATATGACGTGGTGGAGTTGAAATTTGCAGAGAATCGTGCGAATGGCCAATCTAAAGGgtaagtgccagaactgtgggtgatcccttaacttatgtatctatttgagt #### Cpsf7_ID2865_5 --> 2 - 2 Original Alignment gaATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCag gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctaggaATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCaggtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc Alignment from CESAR gaATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCag gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctaggaATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCaggtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc Alignment from Spaln_aa2Genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctagGAATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCAGgtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc Alignment from Spaln_nt2Genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctagGAATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCAGgtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc Alignment from Pairagon GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctagGAATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCAGgtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc Alignment from Exonerate_protein2genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctagGAATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCAGgtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc Alignment from Exonerate_coding2genome GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctagGAATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCAGgtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc Alignment from GeneWise GAATACCTCCACGGGCCCACTCCCGAGACTCTAGTGATTCTGCTGATGGACGGGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGTGTGGATAAGCCCCCCAGCGTGTTGCCCTACTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCAATTCCACCCCCACCACCTCTCTCCTCAAGCTTTGGTGTCCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTCCTCATCTGGCTGTACCTCCCCCGGGGGCCATCCCACCAGCCCTTCACCTCAACCCAGCCTTCTTCCCCCCACCAAATGCTACAGTGGGGCCTCCACCAGATACTTACATGAAGGCCTCTACACCCTATAACCACCATGGCAG gacctactgcgatgcatggatcttggccactaagaatgtttgtcttctagGAATACCTCCACAGGCCCATTCCAGAGATTTGAGTGATTCTGCTGATGGACGAGCAACCCCCTCTGAGAATCTTGTACCCTCATCTGCTCGAGTGGATAAGCCCCCCAGTGTCTTGCCCTATTTTAACCGTCCTCCTTCAGCCCTTCCCCTAATGGGTCTGCCCCCACCCCCGATTCCGCCCCCACCAACTCTCTCCTCGAGCTTTGGTGTTCCTCCTCCTCCTCCTGGTATCCACTACCAGCATCTCATGCCCCCTCCTCCTCGATTACCTTCCCATCTCACTGTACCTCCCCTGGGGGCCATCCCCCCCGCCCTTCACCTGAACCTGGCCTTTGTCCCACCACCAAATGCTACTGTAGGGCCTCCACCAGATACGTACATGAAGGCCTCTACGCCCTATAACCACCATGGCAGgtaagctgcgtctgtgtcagtgtgtgaatgtttgtttgtgtgtgtacctc #### Cpsf7_ID2867_7 --> 2 - 2 Original Alignment ggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTag cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAaggtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa Alignment from CESAR ggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTag cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagggGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAaggtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa Alignment from Spaln_aa2Genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa Alignment from Spaln_nt2Genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa Alignment from Pairagon GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa Alignment from Exonerate_protein2genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa Alignment from Exonerate_coding2genome GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa Alignment from GeneWise GGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGAGTCGCCAATGATGAGCGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGAGGCCAAGTCATACAGTGTGGGTGCCAGTGGGAGCTCTTCTAG cttgtagtatatgcccttatcagtctcaccactctgttcttcacccccagGGGATTACAGTGACGCCATTGAGACACTACTCACAGCCATTGCAGTTATCAAACAGTCCCGCGTCGCCAATGATGAACGTTGCCGGGTCCTCATCTCCTCTCTTAAGGACTGTCTTCATGGCATAGACGCCAAGTCATACAGTGTAGGTGCCAGTGGTAGCTCTTCAAGgtaagctgatggacctatagttgcactctcttgcagattggcaaggcaaa #### Cpt1a_ID30_2 --> 0 - 2 Original Alignment AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCac attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTacgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc Alignment from CESAR AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCac attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTacgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc Alignment from Spaln_aa2Genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTACgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc Alignment from Spaln_nt2Genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTACgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc Alignment from Pairagon AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTACgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc Alignment from Exonerate_protein2genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTACgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc Alignment from Exonerate_coding2genome AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTACgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc Alignment from GeneWise AATGGCATCATCACTGGTGTGTTCCCCGCGAGTCCCTCCAGCTGGCTTATCGTGGTGGTGGGTGTGATATCATCCATGCATACCAAAGTGGACCCCTCCCTGGGCATGATTGCAAAGATCAATCGGACCCTAGACACCAC attgcaaggctgaactaggggaggcagcgtctctttctatcttctttcagAATGGTATAATCACTGGGGTGTTCCCAGCTAGTCCCTCTGGCTGGCTTATTGTGGTGGTGGGTGTGATACCATCCATGCATACCAAAGTGGACCCCTCACTGGGCATGATTGCCAAGATCAAACAGACCCTAGACACTACgtaagtgaccccatccacaccctgaaccactttgagaagatgtggttacc #### Cpt1a_ID37_9 --> 2 - 2 Original Alignment acACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACag tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagacACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACaggtgagtgtacatataagtagattacatgtgcacttcactatacacacata Alignment from CESAR acACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACag tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagacACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACaggtgagtgtacatataagtagattacatgtgcacttcactatacacacata Alignment from Spaln_aa2Genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagACACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtgagtgtacatataagtagattacatgtgcacttcactatacacacata Alignment from Spaln_nt2Genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagACACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtgagtgtacatataagtagattacatgtgcacttcactatacacacata Alignment from Pairagon ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagACACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtgagtgtacatataagtagattacatgtgcacttcactatacacacata Alignment from Exonerate_protein2genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagACACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtgagtgtacatataagtagattacatgtgcacttcactatacacacata Alignment from Exonerate_coding2genome ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagACACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtgagtgtacatataagtagattacatgtgcacttcactatacacacata Alignment from GeneWise ACACCATCCAACACGTCAAGGACAGCAGGCACATTGTCGTGTACCACAGAGGCCGTTACTTCAAGGTCTGGCTCTACCATGACGGGAGGCTGCTGAGGCCCCGTGAGCTGGAGCAGCAGATGCAGCAGATCCTGGATGACACCTCAGAGCCGCAGCCCGGGGAAGCCAAGCTTGCCGCCCTCACTGCCGCAGACAG tctctatctatggcctgcgtgatgctgtcctggcctgtgtccctccacagACACAATACAACATATCAAAGACAGTAGACACATAGTGGTATACCACAGAGGTCGTTATTTCAAGGTCTGGCTTTTCCATGATGGAAGACTCCTGAGGCCCCGTGAGCTGAAGCAGCACATGCTACAGATCCTGGATGACACCTCAGAGCTCCAACCCGGAGAAGCCAAACTTGCTGCTCTTACTGCTACAGACAGgtgagtgtacatataagtagattacatgtgcacttcactatacacacata #### Cpt1a_ID43_15 --> 0 - 0 Original Alignment GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca Alignment from CESAR GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca Alignment from Spaln_aa2Genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca Alignment from Spaln_nt2Genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca Alignment from Pairagon GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca Alignment from Exonerate_protein2genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca Alignment from Exonerate_coding2genome GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca Alignment from GeneWise GCAGAGCAGAGGTTCAAGCTGTTCAAGATAGCTTGTGAAAAGCACCAGCACCTGTACCGCCTCGCCATGACGGGCGCTGGCATCGACCGCCACCTCTTCTGCCTCTATGTGGTGTCCAAGTATCTGGCAGTCGACTCACCTTTCCTGAAGGAG acctacgaagaatccatggtctggcagactccccctgatgctggataaagGCAGAACAGAGGTTCAAGCTTTTCAAGTTGGCTTGCAAAAAGCACCAGCACTGGTATTGCCTTACCACAACAGGTGCCGGCATTGACCGCCACCTCTTCTGCCTTTATGTAGTGTCTAAGTATCTGACTGTTGCCTCACCTTTCCTAAGGGAGgtaagtgcttcaactatgcgtatcaagcctggcatttctgtgctgaggca #### Crtac1_ID8457_14 --> 2 - 1 Original Alignment acACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGg tcacatactggaatcctggatacatggctgactttgcttttatttttcagatACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGggtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta Alignment from CESAR acACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGg tcacatactggaatcctggatacatggctgactttgcttttatttttcagatACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGggtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta Alignment from Spaln_aa2Genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG tcacatactggaatcctggatacatggctgactttgcttttatttttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta Alignment from Spaln_nt2Genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG tcacatactggaatcctggatacatggctgactttgcttttatttttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta Alignment from Pairagon ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG tcacatactggaatcctggatacatggctgactttgcttttatttttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta Alignment from Exonerate_protein2genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG tcacatactggaatcctggatacatggctgactttgcttttatttttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta Alignment from Exonerate_coding2genome ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG tcacatactggaatcctggatacatggctgactttgcttttatttttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta Alignment from GeneWise ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG tcacatactggaatcctggatacatggctgactttgcttttatttttcagATACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAGCCTGTGTGTGTAAACACCTATGGAAGCTACAGGTGCCAGACCAATAAAAGATGTAATCGGGGATATGAACCCAATGAAGATGGCACAGCTTGTGTGGgtaaggagaaccctggacactttaagtacaggagatatgttcagtgtcta #### Crtac1_ID8461_11 --> 0 - 1 Original Alignment GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGg caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGggtgaggtggggccatgtagagagtagtagcctccgtgtatgcataatgct Alignment from CESAR GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGg caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGggtgaggtggggccatgtagagagtagtagcctccgtgtatgcataatgct Alignment from Spaln_aa2Genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGGgtgaggtggggccatgtagagagtagtagcctccgtgtatgcataatgct Alignment from Spaln_nt2Genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCAT---TGATGGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGGgtgaggtggggccatgtagagagtagtagcctccgtgtatgcataatgct Alignment from Pairagon GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGA---TGGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGGgtgaggtggggccatgtagagagtagtagcctccgtgtatgcataatgct Alignment from Exonerate_protein2genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGGgtgaggtggggccatgtagagagtagtagcctccgtgtatgcataatgct Alignment from Exonerate_coding2genome GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGAT---GGGGGTTCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGG caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGGgtgaggtggggccatgtagagagtagtagcctccgtgtatgcataatgct Alignment from GeneWise GGCTTCAGCAACAACTGGTTGCGTGTGGTACCTCGCACCCGGTTCGGGGCCTTTGCCAGGGGCGCCAAGGTTGTACTCTACACCAAGAAGAGTGGGGCGCACCTACGGATCATTGATGGGGGT---TCCGGCTACCTGTGTGAAATGGAGCCTGTGGCACATTTTGGCCTGGGACGG caactctataacacccaccatatctgaagtccccatgttctgtgttgcagGGTTTCAGTAACAACTGGTTGCATGTAGTACCTCGAACACGGTTTGGGGCATTTGCGCGAGGTACCAAAGTTGTACTCTACACTATGAAGAGTGGGGTGCATTTACGGATCATTGATGGTGGGGGTTCTGGCTATCTGTGTGAAATGGACCCCCTGGCACATTTTGACCTGGGTGAGgtggggccatgtagagagtagtagcctccgtgtatgcataatgct #### Crtac1_ID8477_5 --> 0 - 1 Original Alignment GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAggtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt Alignment from CESAR GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAg aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAggtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt Alignment from Spaln_aa2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAGgtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt Alignment from Spaln_nt2Genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGA---GGGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAGgtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt Alignment from Pairagon GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGA---GGGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAGgtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt Alignment from Exonerate_protein2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAGgtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt Alignment from Exonerate_coding2genome GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAGgtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt Alignment from GeneWise GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG aatacccaacattacaaggctgcccatctctaacaaactttattttaaagGGCTCGGGTAGATACTCCATTTACCTATCCAACTATGCATATGGAGAG---GGGCCAGATGCCCTCATACAGATGGACCCGGAACCCAGTGATCTCTCACGGGGGGTCCTTGCACTAAGGGATGTGGCAGCTGAGTCCGGGGTCAGCAAGTACACAGgtaaggcagaactgttcaagatcatcaacattcaggaagacagagaaggt #### Crtac1_ID8485_3 --> 1 - 1 Original Alignment gTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAg agtttcctagagcaaagtcacctcggggttatttttctcccaaataataggTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAggtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt Alignment from CESAR gTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAg agtttcctagagcaaagtcacctcggggttatttttctcccaaataataggTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAggtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt Alignment from Spaln_aa2Genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agtttcctagagcaaagtcacctcggggttatttttctcccaaataatagGTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt Alignment from Spaln_nt2Genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agtttcctagagcaaagtcacctcggggttatttttctcccaaataatagGTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt Alignment from Pairagon GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agtttcctagagcaaagtcacctcggggttatttttctcccaaataatagGTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt Alignment from Exonerate_protein2genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agtttcctagagcaaagtcacctcggggttatttttctcccaaataatagGTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt Alignment from Exonerate_coding2genome GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agtttcctagagcaaagtcacctcggggttatttttctcccaaataatagGTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt Alignment from GeneWise GTACACCGGCCCCAACCTGGTTCTGAAGTACAATCGAGCCCAGAATCGGCTGGTGAATATTGCGGTGGACGAGCGCAGCTCACCCTACTATGCTCTGAGGGACCGTCAGGGGAACGCCATCGGGGTCACAGCCTGTGACATCGATGGGGACGGCCGTGAGGAGATCTACTTTCTCAACACCAATAACGCCTTCTCAG agtttcctagagcaaagtcacctcggggttatttttctcccaaataatagGTACACTGGTCCCAACCTAGTTTTGAAGTACAACCAGGCCCAGAATCAGCTTGTCAATATTGCAGTGGACAAGCGCAGCTCACCGTACTATGCCTTAAGGGACCGCCAGGGGAATGCTATTGGGGTCACAGCCTGTGACATTGATGGGGATGGCCGTGAGGAAATCTACTTCCTCAACACCAATAATGCCTTTTCAGgtaagtgctggtttttccagtctcatcctgatcctcttgaatgttgcttt #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTggtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTggtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATC taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGGGCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATC taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGGGCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcttactcccagcccaatcgtttttcccatcctcggacagGTCCTGGTTGTCGAAGAGACCCGCCTCACCTTCCCTAGCCCTGCTCCCCATGGATGGCACAGGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCGCAGCCTCTTGgtaaatataggtgtaatgatccattcccccaaatacatgcctgctgtcca #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa #### Ctsf_ID677_5 --> 0 - 1 Original Alignment GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAg agcttaccaggtgtgccaggttggaattccccacttgtttttttcagcagGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAggtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc Alignment from CESAR GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAg agcttaccaggtgtgccaggttggaattccccacttgtttttttcagcagGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAggtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc Alignment from Spaln_aa2Genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG agcttaccaggtgtgccaggttggaattccccacttgtttttttcagcagGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAGgtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc Alignment from Spaln_nt2Genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG agcttaccaggtgtgccaggttggaattccccacttgtttttttcagcagGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAGgtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc Alignment from Pairagon GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG agcttaccaggtgtgccaggttggaattccccacttgtttttttcagcagGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAGgtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc Alignment from Exonerate_protein2genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG agcttaccaggtgtgccaggttggaattccccacttgtttttttcagcagGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAGgtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc Alignment from Exonerate_coding2genome GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG agcttaccaggtgtgccaggttggaattccccacttgtttttttcagcagGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAGgtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc Alignment from GeneWise ---GACTTCTCTGTGAAGATGGCTCCACTCTTCAAGGACTTCATGACCACCTATAACCGGACTTATGAATCAAGGGAAG agcttaccaggtgtgccaggttggaattccccacttgtttttttcagCAGGACTTCTCTGTAAAAATGGCTCCACTCTTCAAAGACTTCATGACCACCTATAACCGGGCTTATGAGTCAAGAGAAGgtaaggctgagccttgtcatctagttcctctaagcctgggggctgtctcc #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGggtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGggtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Spaln_aa2Genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Exonerate_protein2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from Exonerate_coding2genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cttcagagaaccctaatagagcaccctgagggatctactcctctttttagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTCCTGATCCGAGGAACTCTGCTATCCCTGTCAGAACAGGgtaaggatcctgatccattttgtttttatcagacgaacccctccataggg #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacaggaGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATagttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacaggaGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATagttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgttggtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATAAGAT tgggagagcttgtgtagcaggtcatcaagtttattttcttcttttcacagGAGGTCTGGAGACAGAGGACGACTATGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCAGCACAGATGGCGAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAGTTGgtgagggctgctgtaggtgaatcagggttaacaccactgggccaaa #### Ctsw_ID1018_8 --> 2 - 0 Original Alignment caATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagtaATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac Alignment from CESAR caATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagtaATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac Alignment from Spaln_aa2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagTAATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac Alignment from Spaln_nt2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagTAATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac Alignment from Pairagon CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagTAATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac Alignment from Exonerate_protein2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagTAATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac Alignment from Exonerate_coding2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagTAATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac Alignment from GeneWise CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACCGTGACCATCAACATGAAACTACTCCAG gtggtggtggacatggcacctccaaaatgttcctcgtctttctctcccagTAATTGCCCACTACCTTGCTGCACATGGACCCATCACTGTGACGATCAATATGAAACTACTTCAGgtatgtagcccagtaagatgacaggaagaggtgccctgtacaatctttac #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcaggtGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGggtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcaggtGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGggtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAGG------CCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAGG------CCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacattttttt Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagagGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacagtgctgt Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGC-------- accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGGTGAGTGCCCTAGCTCAgtttgggcttatctaacccaaggacattttttt Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacattttttt Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacattttttt Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacattttttt Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagAGGAGGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtgagtgccctagctcagtttgggcttatctaacccaaggacattttttt Alignment from GeneWise ---TTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGC---------TG accactcctttgccaccctgttggtaccagtcccccatcttccaattcagaggagGAGTTTGGCCAATTATATGGGCAGGAGAGGTCACCAGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGGTGAGTGCCCTAGCTCAgtttgggcttatctaacccaaggacattttttt #### Cwf19l1_ID8931_13 --> 0 - 2 Original Alignment ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAag acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAaggtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa Alignment from CESAR ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAag acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAaggtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa Alignment from Spaln_aa2Genome ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAAGgtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa Alignment from Spaln_nt2Genome ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAAGgtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa Alignment from Pairagon ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAAGgtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa Alignment from Exonerate_protein2genome ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAAGgtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa Alignment from Exonerate_coding2genome ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAAGgtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa Alignment from GeneWise ATTGCACAGCCAGGAGCAGCATATTTTTATGTTGAACTCGACACAGGAGAAAAGCTTTTCCACAGAATTAAAAAGAATTTTCCTTTGCAATTTGGAAG acaggccacactaagatactcctgtattcctgactccccgatcccttcagATTGCACAGCCGGGAACAGCATATTTTTATATTGAGCTTGACACAGGAGAAAAGCTCTTCCACAGAATTAAAAAGAATTTTCCATTGCAACTTGGAAGgtaaaaattgcccctgtgctttatctctttgttggtgtgatccaggcaaa #### Cwf19l1_ID8937_7 --> 1 - 0 Original Alignment aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagaAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc Alignment from CESAR aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagaAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc Alignment from Spaln_aa2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagAAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc Alignment from Spaln_nt2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagAAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc Alignment from Pairagon AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagAAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc Alignment from Exonerate_protein2genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagAAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc Alignment from Exonerate_coding2genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagAAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc Alignment from GeneWise AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctgagctttcaaattccacagtgagtatgttgtttcagAAACCAGGTTGTTGTACAAGAAAGTGCACAGCATGCCACTCACTTCATAGTGCTAGCAAATGTTGGAAATCCTGAAACAAAGAAGgtaagtgtcccaggcttggcctccagagataccttaagcgcctgttttcc #### Cwf19l1_ID8940_4 --> 2 - 1 Original Alignment ctCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGg ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagctCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGggtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc Alignment from CESAR ctCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGg ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagctCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGggtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc Alignment from Spaln_aa2Genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagCTCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGGgtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc Alignment from Spaln_nt2Genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagCTCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGGgtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc Alignment from Pairagon CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagCTCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGGgtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc Alignment from Exonerate_protein2genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagCTCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGGgtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc Alignment from Exonerate_coding2genome CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagCTCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGGgtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc Alignment from GeneWise CTCCTATTCAGACATATGTGCTTGGTGCCAATAACGAGGAGACAGCAAACTATTTCCAGGGTGCTGATGGCTGTGAATTGGCTGAAAACATCACTTACCTGG ttcagagcaaaaatctgtactcctgtggccaaataactggatgtttttagCTCCTATTCAGACATATGTATTTGGTGCCAATAACGAGGAGACAGCAAATTATTTCCAGGGGGCTGATGGCTGTGAATTAGCAGAAAATATCACCTACTTGGgtcagtttaggacatttattttagcgaattgtgtacaacaaaagaaaagc #### Cwf19l1_ID8942_2 --> 1 - 0 Original Alignment cTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT gatccatatacatctccttaagcgacaatgtgtctgttgtgtgcctccagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat Alignment from CESAR cTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT gatccatatacatctccttaagcgacaatgtgtctgttgtgtgcctccagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat Alignment from Spaln_aa2Genome CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT gatccatatacatctccttaagcgacaatgtgtctgttgtgtgcctccagCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat Alignment from Spaln_nt2Genome CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT gatccatatacatctccttaagcgacaatgtgtctgttgtgtgcctccagCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat Alignment from Pairagon CTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT gatccatatacatctccttaagcgacaatgtgtctgttgtgtgcctccagCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat Alignment from Exonerate_protein2genome TTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT gatccatatacatctccttaagcgacaatgtgtctgttgtgtgcctccagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat Alignment from Exonerate_coding2genome TTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT gatccatatacatctccttaagcgacaatgtgtctgttgtgtgcctccagcTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat Alignment from GeneWise GCTCAGAAGCCACTGCGTCTCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGAT tctccttaagcgacaatgtgtctgttgtgt------------GCCTCCAGCTTGGCCTGTGGAGATGTTGAAGGAAAGTTTGATGTTTTATTCAATAGAGTTCGGACAATTCAGAAGAAAAGTGGAAACTTTGATgtgagttactcatctttaaactggaagctaaatcataagtaaattcctat #### Cyp17a1_ID9993_7 --> 1 - 1 Original Alignment cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagtATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAA---TATCAGCCAGATCAGTTTATGCCTggttaagccctgtccattccatgctgactcctgtaccatccagtttccctg Alignment from CESAR cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagtATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGCCAGATCAGTTTATGCCTggttaagccctgtccattccatgctgactcctgtaccatccagtttccctg Alignment from Spaln_aa2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGCCAGATCAGTTTATGCCTGgttaagccctgtccattccatgctgactcctgtaccatccagtttccctg Alignment from Spaln_nt2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAAT---ATCAGCCAGATCAGTTTATGCCTGgttaagccctgtccattccatgctgactcctgtaccatccagtttccctg Alignment from Pairagon CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAAT---ATCAGCCAGATCAGTTTATGCCTGgttaagccctgtccattccatgctgactcctgtaccatccagtttccctg Alignment from Exonerate_protein2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGCCAGATCAGTTTATGCCTGgttaagccctgtccattccatgctgactcctgtaccatccagtttccctg Alignment from Exonerate_coding2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGCCAGATCAGTTTATGCCTGgttaagccctgtccattccatgctgactcctgtaccatccagtttccctg Alignment from GeneWise CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGGGCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaagttagctctttataccgtctctgtgtcttgcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGGCACTGCATCATGACAAAAATGAATAT---CAGCCAGATCAGTTTATGCCTGgttaagccctgtccattccatgctgactcctgtaccatccagtttccctg #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTT------GGGCATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTT------GGGCATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG taggtgagcatagatgtaacaatcatagtggcaatgttctgcttctccagGAGAAGTTCAATAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGGCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTGGGC------ATAGAGACCACTAGTTCTGTGCTGAACTGGATACTGACATTCTTAGTTCATAATCCTCAGgtttgcatgtgtctcgatcaccatggaggcaatgcctgtaaccatagcca #### Cyp17a1_ID9997_3 --> 2 - 0 Original Alignment taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagtaTGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc Alignment from CESAR taTGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGAT---------------------------CTGGTGGACATATTCCCGTGGTTGAAG aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagtaTGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc Alignment from Spaln_aa2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG--- aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagTATGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATCTGgtggagataatcccatggttaaaggtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc Alignment from Spaln_nt2Genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGC---------------------------GATCTGGTGGACATATTCCCGTGGTTGAAG aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagTATGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc Alignment from Pairagon TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAG---------------------------CGATCTGGTGGACATATTCCCGTGGTTGAAG aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagTATGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATCTGGTGGAGATAATCCCATGGTTAAAGgtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc Alignment from Exonerate_protein2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagTATGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATctggtggagataatcccatggttaaaggtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc Alignment from Exonerate_coding2genome TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagTATGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATctggtggagataatcccatggttaaaggtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc Alignment from GeneWise TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAGATT aagctacttgttcactgctttatcaacttctcccctctgtgtatgtttagTATGCCAAGAAGCCAACTCACTGTGTGACTTGATACTTTCATATGATGGGGAGTCCCAAGATCTATCTACACTCATTTTCAAGTCAGTCATCAACATCATCTGTACCATCTGTTTCAACATCTCTTTTGAGAACATGGATCCAATATTGACTATGATACAGACCTTCATGGAGGGCATTGTTGTGGTCTTGGGCCACAGTGATCTTGTCAAGATCACCCCATGGTTTGATCTGgtggagataatcccatggttaaaggtaagtgggaatttttattaagcattgtttctacttcccagtttcccacc #### Cyp17a1_ID9998_2 --> 0 - 1 Original Alignment GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCG---GATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGa accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCAA---AAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGggttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga Alignment from CESAR GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGa accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCAA---AAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGggttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga Alignment from Spaln_aa2Genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCAAAAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGGgttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga Alignment from Spaln_nt2Genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCA---AAAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGGgttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga Alignment from Pairagon GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCA---AAAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGGgttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga Alignment from Exonerate_protein2genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCG---GATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCAA---AAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGGgttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga Alignment from Exonerate_coding2genome GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCG---GATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCAA---AAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGGgttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga Alignment from GeneWise GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGAT---AGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA accaggctacctgtgatgagcccagtgaatctcatcaccacctcttccagATAACTCTAGGACTCCTGCCAGACCAA---AAAGGTGTGGCCTTTGCAGATGACAGTAGTAGCTCTTGGCAACTACACCGGAAGTTAGTATTCAGCACCTTTTCCCTATTGAAAGATGACCAGAAGCTAGAGAAGATGGgttggtgaagagttagccaaggactgaggggcttgacaatgtactctaga #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttgattgttttcttctttcccagGGTGTT---ACACGCAACA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtgttcactctatgttggttgcagGGTGTT---ACACGCAACA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttgattgttttcttctttcccagGGTGTT---ACACGCAACA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTACTTTGTTGATTGTTTTCTTCTTTCCCAGGGTGTTA---CACGCAACA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCG-------------------------------GGGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTACTTTGTTGATTGTTTTCTTCTTTCCCAGGGTGTTA---CACGCAACA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttgattgttttcttctttcccagGGTGTT---ACACGCAACA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttgattgttttcttctttcccagGGTGTT---ACACGCAACA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttgattgttttcttctttcccagGGTGTT---ACACGCAACA #### Cyp26a1_ID7417_5 --> 0 - 0 Original Alignment GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac Alignment from CESAR GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac Alignment from Spaln_aa2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac Alignment from Spaln_nt2Genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac Alignment from Pairagon GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac Alignment from Exonerate_protein2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac Alignment from Exonerate_coding2genome GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac Alignment from GeneWise GCACTAAAACAATCGTCAACAGAGCTCCTCTTTGGTGGTCATGAAACTACAGCCAGTGCTGCGACGTCACTGATCACTTACCTAGGACTCTACCCACATGTCCTCCAGAAAGTTCGAGAAGAGATAAAGAGCAAG cccccatgcaacacactggcaactctaacctgctccccatctctatctagGCACTAAAACAATCATCAACAGAGCTCCTCTTTGGTGGTTATGAAACTACAGCTAGTGCTGCGACATCGCTTATCACTTACCTAGGACTCTACCCACACGTCCTCCAAAAAGTTCGAGAAGAGATAAAAAGCAAGgtgagtgagcgtccaatccataggactctcacccaccccgccagttctac #### Cyp2c29_ID7761_4 --> 2 - 0 Original Alignment gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacaggc---TCATGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac Alignment from CESAR gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacaggcTCA---TGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac Alignment from Spaln_aa2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacagGCTCA---TGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac Alignment from Spaln_nt2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacagGCTCA---TGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac Alignment from Pairagon GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacagGCTCA---TGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac Alignment from Exonerate_protein2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacagGCTCA---TGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac Alignment from Exonerate_coding2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacagGCTCA---TGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac Alignment from GeneWise GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactttagtgccctttatatttgccacatcttgcttgtcgtctcacagGCTCA---TGTGACCCTACATTTATCCCAAGCTGTGCTCCATGTAATGTCATCTGCTCCATTATTTTCCAGAACCGTTTCGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATCAATGAGAATGTGAAGATCCTGAGTTCCCCATGGTTGCAGgtgagttgatcaaaaaattatgacagctcacttagatctggatggtatac #### Cyp2c29_ID7765_8 --> 0 - 1 Original Alignment GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACTTCATG---CCTTTTTCAACAg agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTggtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga Alignment from CESAR GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACTTC---ATGCCTTTTTCAACAg agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTggtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga Alignment from Spaln_aa2Genome GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACTTC---ATGCCTTTTTCAACAG agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTGgtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga Alignment from Spaln_nt2Genome GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACTTC---ATGCCTTTTTCAACAG agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTGgtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga Alignment from Pairagon GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACT---TCATGCCTTTTTCAACAG agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTGgtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga Alignment from Exonerate_protein2genome GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACTTC---ATGCCTTTTTCAACAG agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTGgtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga Alignment from Exonerate_coding2genome GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACTTC---ATGCCTTTTTCAACAG agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTGgtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga Alignment from GeneWise GGAACTACAGTAATAACATCACTGTCATCAGTGCTGCATGACAGCAAGGAGTTTCCCAACCCAGAGATGTTTGACCCTGGGCACTTTCTAAATGGGAATGGAAACTTTAAGAAAAGTGACTACTTC---ATGCCTTTTTCAACAG agtttggttccataatttctgataacttatcatttttttttccttttcagGGAACTACTGTAATAACATTGCTGTCATCCGTGCTGCATGAGAGCAAGGAGTTTCCAAACCCAGAGATGTTTGATCCTGGGCACTTTTTA---GGGAACAGCAATTTCAAGAAAAGTGACTACTTTATCATGCCTTTTTCAACTGgtttgtgagcctacatggagcttgagtatcctgaagacctgtaagatgga #### Cyp2c37_ID7843_6 --> 0 - 1 Original Alignment GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAg tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAggtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga Alignment from CESAR GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAg tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAggtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga Alignment from Spaln_aa2Genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAGgtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga Alignment from Spaln_nt2Genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAGgtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga Alignment from Pairagon GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAGgtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga Alignment from Exonerate_protein2genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAGgtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga Alignment from Exonerate_coding2genome GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAGgtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga Alignment from GeneWise GAAGATGGCAATCAACCATTGCAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTATCCTACTCCTCTTGAAGTACCCACATGTCACAG tggctatacttgatagacttgtgtattaagttgcagcctttttctttcagGAAGAGGGCAATCAACCGTTGCAAAATAGGCTTGAGCACTTGGCAATAACAGTGACTGATCTTTTTCCTGCTGGGACAGAGACATCAAGCACAACCCTGAGATATGCTATCCTACTCCTCTTGAAATACCCGCATGTCACAGgtaagactgacacaggaattgaggcattgtgtccttggcaaggttttaga #### Cyp2c39_ID7783_2 --> 0 - 1 Original Alignment TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAggtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa Alignment from CESAR TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAggtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa Alignment from Spaln_aa2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAGgtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa Alignment from Spaln_nt2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAGgtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa Alignment from Pairagon TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAGgtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa Alignment from Exonerate_protein2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAGgtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa Alignment from Exonerate_coding2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAGgtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa Alignment from GeneWise TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtaaaagtacatgatcactaaagttcgtctactcatacctttttgcagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCACTGTTGTATTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGGGAAGAGTTCTCCGACAGAGGAAGCATTCCAATGGTAGATGAGATCAATAATGGCCTAGgtgctgaagtaagtatattcatgttcagattagggcctatgagaaattaa #### Cyp2c39_ID7787_6 --> 0 - 1 Original Alignment GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAg atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTggtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga Alignment from CESAR GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAg atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTggtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga Alignment from Spaln_aa2Genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTGgtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga Alignment from Spaln_nt2Genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTGgtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga Alignment from Pairagon GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTGgtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga Alignment from Exonerate_protein2genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTGgtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga Alignment from Exonerate_coding2genome GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTGgtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga Alignment from GeneWise GCAAATCACATCCAACAAGCAGAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAG atggggtatgccactaaactatttgtccgtgggtatgtgtcttgggccagGCAAATCATATTCAACAAGCAGAATTCTCCCTTGAGAACCTGGCCTGCACCATCAACAATCTCTTTGCTGCAGGGACAGAGACAACAAGCAAAACACTGAGATATGCTATCCTACTTCTCATGAGGTACCCGGATGTTACTGgtcattgcaaaagtgctagacttcaggagtcctctaagcaaaacttctga #### Cyp2c40_ID7816_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCA---GCAg atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAggtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat Alignment from CESAR GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTC---TCAGCAg atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAggtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTC---TCAGCAG atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAGgtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTC---AGCAG atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAGgtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat Alignment from Pairagon GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTT---CTCAGCAG atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAGgtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTC---TCAGCAG atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAGgtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTC---TCAGCAG atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAGgtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat Alignment from GeneWise GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAGGA- atacatattttcccttcggtgatatccctattaatcttttttcctttaagGGGACTCAGGTAATGACATCACTAACATCAGTGCTTCACGACAGTACAGAATTCCCTAACCCCGAGGTGTTTGACCCTGGACACATTCTAGATGGTAATGGAAACTTTAAAAAAAGTGATTACTTTGTGCCCTTCTCCTCAGCAGgtaagtagagcactggcccctaagcccccatataagtaagcagtttgaat #### Cyp2c40_ID7819_5 --> 0 - 0 Original Alignment ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca Alignment from CESAR ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca Alignment from Spaln_aa2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca Alignment from Spaln_nt2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca Alignment from Pairagon ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca Alignment from Exonerate_protein2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca Alignment from Exonerate_coding2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca Alignment from GeneWise ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGTCATAATAAACTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGGGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGACGTCAG cctgcttcacaaaagcctatatatactgtactgtgttctttcctccctagATTTTCAATGCAGTCCCTATTCTTATTGACTATTGTCCAGGAAGTCACAACAAACTTTTTAAAACTCATACATGGGTTAAAAGCTATCTTTTAGGGAAGATAAAAGAACATGAAGAATCACTGGATATTACAAATCCCAGGGACTATATTGATTACTTCTTGATCCAAAGACGTCAGgtgagtagtgtgggtgttcaaaattaaaaaacaacatatttttttttaca #### Cyp2c40_ID7822_2 --> 0 - 1 Original Alignment TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGg ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGggtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta Alignment from CESAR TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGg ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGggtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta Alignment from Spaln_aa2Genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta Alignment from Spaln_nt2Genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta Alignment from Pairagon TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta Alignment from Exonerate_protein2genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta Alignment from Exonerate_coding2genome TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta Alignment from GeneWise TTTTCTAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGCTCACAGCCTATTGTGGTATTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGAGAAGAGTTCTCTGGAAGAGGAAGGATTCCGGTTTTTGACAAGGTTTCTACAGGAAAGG ataggggcaggatggcgcctgaatctcacacctttgtgtttcttcaccagTTTTCCAAAACATATGGCCCTGTGTTCACTCTGTATTTTGGGTCACAGCCTATTGTTGTCTTACATGGTTATGAGGCAATTAAAGAAGCCCTCATTGACCATGGGGAAGAGTTTTCTGGAAGAGGAAGGATCCCAGTTTTTGACAGGGTGTCTACAGGAAAGGgtaagtgtgtgtgtgtgtgtgtgggcgcaagggcttgcaaatataggcta #### Cyp2c44_ID8885_6 --> 0 - 1 Original Alignment GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAg ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAggtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag Alignment from CESAR GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAg ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAggtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag Alignment from Spaln_aa2Genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAGgtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag Alignment from Spaln_nt2Genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAGgtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag Alignment from Pairagon GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAGgtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag Alignment from Exonerate_protein2genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAGgtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag Alignment from Exonerate_coding2genome GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAGgtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag Alignment from GeneWise GAGAAACACAACCTGAAATCTGATTTTAATCTGGAGAATTTGGCCATCTGTGGGTCTAACTTGTTTACGGCAGGCACAGAGACAACCAGCACCACCCTGAGATTCGGGCTTCTGCTCCTTGTCAAGCATCCAGAGGTGCAAG ccagacatttgggattgaaaagctattacactgtcccacttttgtttcagGAGAAACACAACCTAAAATCTGACCTTAATTTGGAAAATTTGGCCATTTGTGGGTCCAACTTGTTTACAGCAGGCACAGAGACAACTAGCACCACACTGAGGTTCGGGCTTCTGCTCCTAGTCAAGCACCCACAGGTGCAAGgtgatgcgcatgcagagggaggcaggagttgctggtgttcatgggaatag #### Cyp2c44_ID8887_4 --> 2 - 0 Original Alignment ctCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagctCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt Alignment from CESAR ctCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagctCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt Alignment from Spaln_aa2Genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagCTCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt Alignment from Spaln_nt2Genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagCTCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt Alignment from Pairagon CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagCTCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt Alignment from Exonerate_protein2genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagCTCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt Alignment from Exonerate_coding2genome CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagCTCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt Alignment from GeneWise CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG cctttgcatattaagctaatatgtgtctattctttaatcattcttttcagCTCAACCATTTGACCCCACATTCATCCTTGCGTGCACTCCTTGTAATGTGATCTGCTACATACTTTTCAACAAGCGATTCCCATACAATGTCAAGACTTTCCTCAACCTCATCGACCTTTTAAATAAAAACTTTTATCAACTGAACTCTGTATGGATCCAGgtgagacctgggggtctttgtaagtgtggcccactgagtcctcatatagt #### Cyp2c44_ID8888_3 --> 2 - 1 Original Alignment gaATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAg agtgagactaactaaagacatcctctgttatgttctccattctttttaagggATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTAGAG---AAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATggtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag Alignment from CESAR gaATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAg agtgagactaactaaagacatcctctgttatgttctccattctttttaagggATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTA---GAGAAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATggtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag Alignment from Spaln_aa2Genome GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG agtgagactaactaaagacatcctctgttatgttctccattctttttaagGGATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTAGAG---AAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATGgtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag Alignment from Spaln_nt2Genome GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG agtgagactaactaaagacatcctctgttatgttctccattctttttaagGGATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTA---GAGAAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATGgtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag Alignment from Pairagon GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG agtgagactaactaaagacatcctctgttatgttctccattctttttaagGGATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTA---GAGAAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATGgtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag Alignment from Exonerate_protein2genome GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG agtgagactaactaaagacatcctctgttatgttctccattctttttaagGGATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTA---GAGAAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATGgtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag Alignment from Exonerate_coding2genome GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG agtgagactaactaaagacatcctctgttatgttctccattctttttaagGGATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTA---GAGAAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATGgtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag Alignment from GeneWise GAATTGTTTTCAGTGAAGGAGAGAGGTGGAAACTCCTGCGACGCTTCTCCCTCATGACGCTGAAGAACTTCGGAATGGGGAAGAGAAGCCTAGAGGAGAGGGTGCAGGAGGAAGCCCGGTGCCTCGTGGAGGAGTTACATAAAACAGAAG agtgagactaactaaagacatcctctgttatgttctccattctttttaagGGATTGTTTTCAGTGAAGGAGAGAGGTGGAAGCTCTTGTGTCGCTTCTCCCTAATGATGCTAAAGAACTTTGGAATGGGCAATAGAAGCTTAGAG---AAGGTGCAGGAGGAAGCTCAGTGCCTTGTCCAGGAGTTAAAAAAAACAGATGgtaagacatgttgcctgcccccattcattcctctttaagaggtcccttag #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATG--------------------------------------------------- ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGGTAAGCATAGCTGTGGAATAACAGTGAGAGAATGTGTGAGCCCATTCCAG #### Cyp2c54_ID7851_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagctAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagctAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagCTAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagCTAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagCTAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagCTAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagCTAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACAAATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAACCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATTCCCAAG tacataggcccatgttgcagttgtaatgttctcttccctttgctgtatagCTAAGGTGCAGGAAGAAATTGAGCATGTGATTGGCAAGCATAGAAGACCTTGCATGCAGGATAGACGCCACATGCCTTACACAAATGCTATGATTCACCAGGTCCAGAGATTCATTGATCTTGTCCCCAACAACCTGCCCCATGAAGTGACTTGTGACATTAAATTTAGGAACTACTTTATACCCAAGgtaagattgtgtttttcatgatctgtccctaattctacagacacatatag #### Cyp2c55_ID7726_3 --> 2 - 1 Original Alignment ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg ctactgtgcctcatctctcattatctagcattccttgtttgtctccacaggtGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATggtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg Alignment from CESAR ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg ctactgtgcctcatctctcattatctagcattccttgtttgtctccacaggtGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATggtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg Alignment from Spaln_aa2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG ctactgtgcctcatctctcattatctagcattccttgtttgtctccacagGTGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATGgtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg Alignment from Spaln_nt2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG ctactgtgcctcatctctcattatctagcattccttgtttgtctccacagGTGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATGgtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg Alignment from Pairagon GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG ctactgtgcctcatctctcattatctagcattccttgtttgtctccacagGTGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATGgtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg Alignment from Exonerate_protein2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG ctactgtgcctcatctctcattatctagcattccttgtttgtctccacagGTGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATGgtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg Alignment from Exonerate_coding2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG ctactgtgcctcatctctcattatctagcattccttgtttgtctccacagGTGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATGgtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg Alignment from GeneWise GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG ctactgtgcctcatctctcattatctagcattccttgtttgtctccacagGTGTGATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAAAGCTCAGAAAGCCAAATGgtaagcatcacatggcaaattgctgctgtcaagtggcactagttaacagg #### Cyp2c55_ID7728_5 --> 0 - 0 Original Alignment GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac Alignment from CESAR GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac Alignment from Spaln_aa2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac Alignment from Spaln_nt2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac Alignment from Pairagon GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac Alignment from Exonerate_protein2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac Alignment from Exonerate_coding2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac Alignment from GeneWise ---TACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgagaaattcagtgagtgactaattcagtgacactgccatgtcccctagGTCTACAATGCTCTGCCTACCCTCATCAATTACCTCCCAGGGAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGAGTAAAAGAGCACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGCTTCCTGATCAGAATGGAACAGgtaatctatacaattaaaaaatttacttttcattcattaatcaccagcac #### Cyp2c55_ID7729_6 --> 0 - 1 Original Alignment GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAg acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTggtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa Alignment from CESAR GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAg acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTggtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa Alignment from Spaln_aa2Genome GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTGgtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa Alignment from Spaln_nt2Genome GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTGgtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa Alignment from Pairagon GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTGgtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa Alignment from Exonerate_protein2genome GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTGgtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa Alignment from Exonerate_coding2genome GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTGgtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa Alignment from GeneWise GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG acttctaatatgtattgttgtttgctaactgactgtggctttgggtttagGAAAAACATAATCCCCACTCAGAGTTTACTATTGAAGGCTTAATGGCTACTGTTACTGACATATTTGTAGCTGGAACAGAGACCACAAACATCACACTAAGATACAGACTCTTGCTCCTACTGAAACATACAGAGTTCACTGgtaagtcctgaaacttctgatgctctgcttcttcggctagcctatgagaa #### Cyp2c65_ID7736_2 --> 0 - 1 Original Alignment TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAAGCTGTG---AAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCg attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTggtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact Alignment from CESAR TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCg attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTggtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact Alignment from Spaln_aa2Genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact Alignment from Spaln_nt2Genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGA---AGCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact Alignment from Pairagon TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGA---AGCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact Alignment from Exonerate_protein2genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact Alignment from Exonerate_coding2genome TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact Alignment from GeneWise TTTTCAAAAGTCTATGGCCCTGTGTTCACTCTGTACTTGGGCAGGAATCCTGCTGTGGTGTTACATGGATATGAA---GCTGTGAAAGAAGCCTTTACTGATCATGGGGAGGAGTTTGCTGGAAGAGGAGTTTTTCCAGTGTTTGATAAGTTTAAGAAAAACTGCG attatttcctggcaggataggctcttagtacttccatcctttctgtgcagTTTTCAAAAGTATACGGCCATGTTTTTACTCTGTACTTGGGAAGGAATCCTGCCGTGGTGCTACACGGATATGAGGCAGCAGTGAAGGAAACCTTTACTGATCATGGGGAGGAATTTGCTGGAAGAGGAGTATTCCCAGTGTTTGATAAGTTTAAGAAAAACTGTGgtgagggttgttgtgcctatctgcacaagtatccagtgtacttgtgtact #### Cyp2c65_ID7737_3 --> 2 - 1 Original Alignment ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg aacctttacctgcctaggaagctcctacggctttgttcctctctccccagggGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAggtaagtattgcatgctttatacttttctcattataggattcctcactgtg Alignment from CESAR ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg aacctttacctgcctaggaagctcctacggctttgttcctctctccccagggGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAggtaagtattgcatgctttatacttttctcattataggattcctcactgtg Alignment from Spaln_aa2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacctgcctaggaagctcctacggctttgttcctctctccccagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaagtattgcatgctttatacttttctcattataggattcctcactgtg Alignment from Spaln_nt2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacctgcctaggaagctcctacggctttgttcctctctccccagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaagtattgcatgctttatacttttctcattataggattcctcactgtg Alignment from Pairagon GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacctgcctaggaagctcctacggctttgttcctctctccccagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaagtattgcatgctttatacttttctcattataggattcctcactgtg Alignment from Exonerate_protein2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacctgcctaggaagctcctacggctttgttcctctctccccagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaagtattgcatgctttatacttttctcattataggattcctcactgtg Alignment from Exonerate_coding2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacctgcctaggaagctcctacggctttgttcctctctccccagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaagtattgcatgctttatacttttctcattataggattcctcactgtg Alignment from GeneWise GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aacctttacctgcctaggaagctcctacggctttgttcctctctccccagGGGCTGTTTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGAGGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAAGATCGTATTCAAGAGGAAGCCCGATGTCTTGTGGATGAATTGAGGAAAACCAAAGgtaagtattgcatgctttatacttttctcattataggattcctcactgtg #### Cyp2c66_ID7747_2 --> 0 - 1 Original Alignment TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTggtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa Alignment from CESAR TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTggtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa Alignment from Spaln_aa2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa Alignment from Spaln_nt2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa Alignment from Pairagon TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa Alignment from Exonerate_protein2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa Alignment from Exonerate_coding2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa Alignment from GeneWise TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG cataccatagcttaatttgtttgttttcgcatattttgttatttctttagTTTTCAAAAGTTTATGGCCCTGTGTTCACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGGCTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtatacatgcttactattgtgttcacactgcatatctaagtgtccaggaa #### Cyp2c67_ID7794_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAggtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag Alignment from CESAR GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAggtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAGgtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAGgtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag Alignment from Pairagon GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAGgtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAGgtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAGgtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag Alignment from GeneWise GGAACACAGGTAATGACATCACTGACATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG cttaaggcccctggggtatcaaccagtgcaccacctcgcctgtgtcacagGGAACACAGGTAATGACATCATTGACATCTGTGCTGCATGAAAGCACTGAGTTCCCCAATCCGGAAGTGTTTGACCCTGGCCATTTTCTAGATGACAATGGAAATTTTAAGAAAAGTCACTACCTTGTTCCTTTGTCAGCAGgtaagtgaaccacttgtacctgctgtttattaagcatccctgagataaag #### Cyp2c67_ID7796_6 --> 0 - 1 Original Alignment GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tttcaactgattgtacattaagaatatcttttccaatctattacctctagGAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAggtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa Alignment from CESAR GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tttcaactgattgtacattaagaatatcttttccaatctattacctctagGAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAggtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa Alignment from Spaln_aa2Genome CAGGAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tttcaactgattgtacattaagaatatcttttccaatctattacctctag---GAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAGgtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa Alignment from Spaln_nt2Genome GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tttcaactgattgtacattaagaatatcttttccaatctattacctctagGAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAGgtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa Alignment from Pairagon GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tttcaactgattgtacattaagaatatcttttccaatctattacctctagGAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAGgtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa Alignment from Exonerate_protein2genome GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tttcaactgattgtacattaagaatatcttttccaatctattacctctagGAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAGgtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa Alignment from Exonerate_coding2genome GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tttcaactgattgtacattaagaatatcttttccaatctattacctctagGAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAGgtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa Alignment from GeneWise GAAAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGTCCTTAAGCTCAACAATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tttcaactgattgtacattaagaatatcttttccaatctattacctctagGAAAAAGGCATAGAGCACATGGAATATACTATCGAACGCCTGGCAACACTGGTGACTGACCTGGTTTTTGATGGGACAGAGTCCCTAAGCTCAACAATGAGATTTGCTCTTTTGCTCTTAATGAAGCACACTCACATCACAGgtgagttcatgggtcatgaagaacagcatgtatcgaagaacctaatgcaa #### Cyp2c68_ID7806_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagccAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGCAA---GTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc Alignment from CESAR ctAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagccAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGCAA---GTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagCCAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACACCGC---AGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagCCAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGCA---AGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc Alignment from Pairagon CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACA---CCGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagCCAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTGC---AAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagCCAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagCCAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc Alignment from GeneWise CTAAAGTCCAGGAAGAGATTGACAATGTGATTGGGAGACAC---CGCAGCCCCTGTATGCAGGACAGGAACCACATGCCTTACACAAATGCCATGGTGCATGAGGTCCAGCGGTACATTGACCTTGGCCCAAATGGTGTGGTGCATGAAGTAACCTGTGATACTAAGTTCAGAAACTACTTCATCCCCAAG aagtccaggcagatttttctgatatgtgcattgcggttttctttttacagCCAAAGTTCAGAAAGAGATTGATAATGTAATTGGAAGACACCGCCGCAGCCCCTGCATGCAGGATAGGAACCACATGCCATACACAAATGCAATGGTACATGAGCTACAGCGATACATTGAGCTGGGCCCAAATGGTGTGGTG---CAAGTGACCTGTGATACAAAGTTTCGAAACTACTTCATCCCAAAGgtaagcctcctcggatgtgttatttcagttctttattaccgtttgggtgc #### Cyp2c69_ID7829_6 --> 0 - 1 Original Alignment GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAggtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag Alignment from CESAR GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAg tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAggtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag Alignment from Spaln_aa2Genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAGgtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag Alignment from Spaln_nt2Genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAGgtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag Alignment from Pairagon GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAGgtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag Alignment from Exonerate_protein2genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAGgtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag Alignment from Exonerate_coding2genome GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAGgtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag Alignment from GeneWise GATAAAGGCATTGAGCACATGGAATATACCATTGAACACCTGGCAACATTGGTGACTGATCTGGTTTTTGGTGGGACAGAGACCTTAAGCTCAACGATGAGATTTGCTCTCCTGCTCTTGATGAAGCACACACACATCACAG tcaaagtaaaatttttatcagataatgacgggtgtgttgtgccttcccagGATAAAGGCATTGAGCACATGGAATATACTATTGAGCACTTGGCAACATTGGTCACTGATTTAGTTTTTGGTGGGACAGAGACGTTGAGCTCAACAATGAGATTTGCTCTTTCGCTCTTGATGAAACACATACACATCACAGgtaagtacatgagtcactgagtgaaccatcctaaaagctttgaggaggag #### Cyp2c69_ID7830_5 --> 0 - 0 Original Alignment ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag Alignment from CESAR ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag Alignment from Spaln_aa2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag Alignment from Spaln_nt2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag Alignment from Pairagon ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag Alignment from Exonerate_protein2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag Alignment from Exonerate_coding2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag Alignment from GeneWise ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATCGATTACTTCCTAATTCAAAGACGTCAG tgtatgaatactatctgggggtattaaccagctattctttctttctttagATGTTCAATGGGGTCCCTATTCTTATTGATTATTGTCCTGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGTTACCTCTTGGAGAAAATAAAGGAACACGAAGAATCATTGGATGTTACAAATCCTCGTGACTTCATTGATTACTTTCTAACCCAAAGACGCCAAgtaagtaggggctatccaataattgataagatttgtcaccaattatatag #### Cyp2c69_ID7831_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcaggcTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt Alignment from CESAR gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcaggcTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcagGCTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcagGCTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt Alignment from Pairagon GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcagGCTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcagGCTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcagGCTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt Alignment from GeneWise GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG gagacttaatataggctgatcctaaaatattgtggtctctccttcctcagGCTCAACATGTGATCCCCAATTCATCATAGGGTGCACTCCCTGCAATGTGATTTGCTCAATCATTTTTCAGAATCATTTTGATTACAAGGATAAGGATTTTCTTAGCTTAATAGGAAAAGTAAATGACTGCACAGAAATTTTGACCTCCCCTGGGTGTCAGgtacggccaaggtttcccttactgaaacatcacaggtgacacttattgtt #### Cyp2c70_ID7874_6 --> 0 - 1 Original Alignment GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAg tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAggtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct Alignment from CESAR GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAg tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAggtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct Alignment from Spaln_aa2Genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAGgtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct Alignment from Spaln_nt2Genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAGgtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct Alignment from Pairagon GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAGgtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct Alignment from Exonerate_protein2genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAGgtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct Alignment from Exonerate_coding2genome GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAGgtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct Alignment from GeneWise GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG tacctaatggtcaaacaaaccaaatagcctctctctgtcttttcctgcagGAGAAACATAACCAAAAATCTAAATTCTCTATGGACAACTTACTTGTGAGCATAGGTGATCTGTTTGGGGCTGGCACTGAGACCACATGTTCTACAGTGAAATATGGACTTCTGCTCCTGCTTAAGCATCCTGAGGTTACAGgtgagtttaggtgggcaggggtacaccaaccaaggccagagcgaaattct #### D19Bwg1357e_ID5839_13 --> 0 - 2 Original Alignment GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACaggtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt Alignment from CESAR GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACag ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACaggtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt Alignment from Spaln_aa2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt Alignment from Spaln_nt2Genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt Alignment from Pairagon GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt Alignment from Exonerate_protein2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt Alignment from Exonerate_coding2genome GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt Alignment from GeneWise GAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGGCAACGCGCACAG ataccacaatctcacatttagtaacactcttccacccctgtgtttgacagGAAATCATTAGCTCCTTGCCCAGCATAGTTAACGACAAATATGGAAGGAAAGTCCTCTTGTACTTGATGAGCCCTAGAGACCCTGCCCACATGGTGCCTGAGCTCATAGAGCTTCTGCAGAAGGGTGATGGCAACGCCCACAGgtgagcgtacagtcatcgcttcaagaaaccacctaaccacatgctccctt #### D19Bwg1357e_ID5851_2 --> 2 - 1 Original Alignment agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTggtgggatcattactgaggttcctggccaagacacacatcactctactggt Alignment from CESAR agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTggtgggatcattactgaggttcctggccaagacacacatcactctactggt Alignment from Spaln_aa2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtgggatcattactgaggttcctggccaagacacacatcactctactggt Alignment from Spaln_nt2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtgggatcattactgaggttcctggccaagacacacatcactctactggt Alignment from Pairagon AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtgggatcattactgaggttcctggccaagacacacatcactctactggt Alignment from Exonerate_protein2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtgggatcattactgaggttcctggccaagacacacatcactctactggt Alignment from Exonerate_coding2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtgggatcattactgaggttcctggccaagacacacatcactctactggt Alignment from GeneWise AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tgaaaacaaaacacaattgaacacatggttttcacctttgttgcctacagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAAGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGTGCAACAAAAGCTGGCAAGAAGGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAATTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtgggatcattactgaggttcctggccaagacacacatcactctactggt #### Dagla_ID2757_13 --> 0 - 2 Original Alignment GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAag aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAaggtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga Alignment from CESAR GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAag aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAaggtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga Alignment from Spaln_aa2Genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAAGgtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga Alignment from Spaln_nt2Genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAAGgtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga Alignment from Pairagon GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAAGgtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga Alignment from Exonerate_protein2genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAAGgtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga Alignment from Exonerate_coding2genome GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAAGgtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga Alignment from GeneWise GGCCGTGGAACCAAACACTATGGCCTGATTGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCGACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAG aaaaacttagtgagcctgttttcacagattggtcgcttttgttctcacagGGGCGTGGTACCAAACATTATGGCCTAATTGTGGTAGGCCACTCCTTAGGAGCAGGCACAGCTGCCATCCTCTCCTTCCTTCTGCGCCCCCAGTACCCAACCCTTAAGTGCTTTGCTTATTCCCCACCAGGAGGACTGCTAAGgtgagtggtaagtggattagggccctaaaaccataaggccctaaggccga #### Dagla_ID2768_3 --> 2 - 1 Original Alignment ccATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCg tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagccATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTggtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg Alignment from CESAR ccATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCg tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagccATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTggtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg Alignment from Spaln_aa2Genome CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagCCATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTGgtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg Alignment from Spaln_nt2Genome CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagCCATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTGgtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg Alignment from Pairagon CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagCCATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTGgtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg Alignment from Exonerate_protein2genome CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagCCATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTGgtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg Alignment from Exonerate_coding2genome CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagCCATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTGgtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg Alignment from GeneWise CCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCG tctgacggtaggcaatggtttctttactcggggtttcctcctctccgcagCCATTTTGGTGATTGAGTTTATCTATGCTATCGTGGGCATCGTCTGGCTCACACAGTACTACACCTCCTGCAATGACCTTACTGCTAAAAACGTTACTCTTGgtaattgcctcatgtacctaacaagtgggtgttctgccatgatactgggg #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccaggTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggttc Alignment from CESAR gTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccaggTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctgggac Alignment from Spaln_aa2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggttc Alignment from Spaln_nt2Genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggttc Alignment from Pairagon GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggttc Alignment from Exonerate_protein2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggttc Alignment from Exonerate_coding2genome GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggttc Alignment from GeneWise GTATGGAAAGGCTGCACCAGGAGACAGGACAATG cttggcacctgtgtaaacatctcgagaagtttttttttcctattatccagGTATGGAAAGGCTGCACCAGGAGACAGGACAATGgtgaggtccccttccccctttgggccttcctaagtgctggggtctggttc #### Dak_ID2910_3 --> 2 - 1 Original Alignment gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcaggtTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg Alignment from CESAR gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcaggtTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg Alignment from Spaln_aa2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcagGTTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg Alignment from Spaln_nt2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcagGTTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg Alignment from Pairagon GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcagGTTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg Alignment from Exonerate_protein2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcagGTTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg Alignment from Exonerate_coding2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcagGTTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg Alignment from GeneWise GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG cagctgtgaacacaactaagcatacttgggagcacacttcttcctttcagGTTTTATTGGTAAAGGAATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgaggtgtgcatgtacagggaaatgtaatgtggtggatgggttgtgttg #### Dclre1a_ID12120_7 --> 2 - 0 Original Alignment ccATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagccATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta Alignment from CESAR ccATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagccATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta Alignment from Spaln_aa2Genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagCCATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta Alignment from Spaln_nt2Genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagCCATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta Alignment from Pairagon CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagCCATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta Alignment from Exonerate_protein2genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagCCATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta Alignment from Exonerate_coding2genome CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagCCATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta Alignment from GeneWise CCATTGCCGATGTTTTAGGTTCAAAGGTGGGCATGTCCCAAGAAAAGTATAAAACTTTGCAGTGCCTCAATATACCAGAAGTCAGTTCCCTCATAACCACAGACATGTGCGACTCTTTGGTTCACCTCCTCCCAATGATGCAAATTAATTTTAAG gttgaacaagctatgtggttaatggtcctttattttctcactgcacacagCCATTGCAGATGTTTTAGGTTCAAAGGTGGGCATATCCCAAGAAAAGTATAAAACTTTGCAGTGTCTCAATATACCAGAAGTCAGTTCCCTCATAACTATAGACATGTGTGAC---TTGGTGCACCTCCTCCCAATGATGCAAATTAATTTTAAGgtaagtaattaaaaaatgtaccttttaaaatgatcaaaggaggatgttta #### Ddb1_ID2923_8 --> 0 - 0 Original Alignment ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa Alignment from CESAR ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa Alignment from Spaln_aa2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa Alignment from Spaln_nt2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa Alignment from Pairagon ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa Alignment from Exonerate_protein2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa Alignment from Exonerate_coding2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa Alignment from GeneWise ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG cataagggatgactcccattctcattcctgtgtccatctgtctgtggcagACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgcgtgtccatcatcttcatgcatttctcttattatcaattgttgaaaa #### Ddb1_ID2933_18 --> 1 - 0 Original Alignment gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccaggAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta Alignment from CESAR gAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccaggAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta Alignment from Spaln_aa2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccagGAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta Alignment from Spaln_nt2Genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccagGAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta Alignment from Pairagon GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccagGAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta Alignment from Exonerate_protein2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccagGAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta Alignment from Exonerate_coding2genome GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccagGAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta Alignment from GeneWise GAAGATCTGCTATCAGGAAGTGTCTCAGTGCTTTGGGGTCCTTTCCAGCCGCATTGAAGTCCAAGATAGCAGTGGAGGCACTACTGCTTTGAGGCCCAGTGCCAGCACCCAG gaaggtatcataatttgtccagtggttcgtgacttcctttgacttcccagGAAAATTTGCTATGAGGAAGTGTCCCAGTGCTTTGGGGATCTGTCCAGTCGCATTGAGGTTCAAGATAGTTGTGGCGGCACTACAGCATTAAGGCCCAGTGCCAGTACCCAAgtaacagcagtggagaaggatgacagtggagctggcagacacttcctgta #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg tatggggttggaagccaatacccataactgttctttttcctccataccagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg tatggggttggaagccaatacccataactgttctttttcctccataccagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG tatggggttggaagccaatacccataactgttctttttcctccataccagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTTGGTACAGCGATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagacatcagtctctggggtatgaaagatggaaatttccatggagaca #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAggtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAggtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag #### Dmrt1_ID5475_2 --> 0 - 1 Original Alignment GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAggtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg Alignment from CESAR GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAggtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg Alignment from Spaln_aa2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg Alignment from Spaln_nt2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg Alignment from Pairagon GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg Alignment from Exonerate_protein2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg Alignment from Exonerate_coding2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg Alignment from GeneWise GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgttctaaagaggtttaacttatgtgcgctcatgtctctcttagGTGGGTTTGAGAAGACAGCAGGCGCAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtgagaaaaggatgtgctttactgtagaacccaaccaagggaagcaggtg #### Dnajc4_ID1964_4 --> 1 - 2 Original Alignment cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag gccctctactcaccttttattccttctcaatctcgattgtttctccttagcTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCaggtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag Alignment from CESAR cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag gccctctactcaccttttattccttctcaatctcgattgtttctccttagcTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCaggtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag Alignment from Spaln_aa2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG gccctctactcaccttttattccttctcaatctcgattgtttctccttagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag Alignment from Spaln_nt2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG gccctctactcaccttttattccttctcaatctcgattgtttctccttagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag Alignment from Pairagon CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG gccctctactcaccttttattccttctcaatctcgattgtttctccttagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag Alignment from Exonerate_protein2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG gccctctactcaccttttattccttctcaatctcgattgtttctccttagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag Alignment from Exonerate_coding2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG gccctctactcaccttttattccttctcaatctcgattgtttctccttagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag Alignment from GeneWise CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG gccctctactcaccttttattccttctcaatctcgattgtttctccttagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCAGAGTCAAGGAAGCAACAGCATCAATACAACCAGCAAGTGCTAGGATACTGCCTCCTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagtccctatgtctccttagtttactgggttgtgggtcaggtttgaag #### Dnmbp_ID8856_10 --> 0 - 0 Original Alignment GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa Alignment from CESAR GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa Alignment from Spaln_aa2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa Alignment from Spaln_nt2Genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa Alignment from Pairagon GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa Alignment from Exonerate_protein2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa Alignment from Exonerate_coding2genome GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa Alignment from GeneWise GAATCTGCATGTGTGAAGGTGGTGGCAGCCATGAGCATATGGGATCTGTGCATGGAGAGGGGACATCATGACCTGGAGCAGTTCGAGAAGGTGCATCGCTACATCAGTGACCAGCTCTTCACACGGTTT agagattgggtcccccacattgctcacttgttctgatatttctctcttagGAATCTGCATGTGTAAGAGTGGTGGCAGCAATGAGCATATGGGATCTCTGCATGGAGAGGGGACACCATGACTTAGAGCAGTTCAAGAAAGTGCATCAGTACATCAGTGACCAGCTATTTACACGATTCgtgaggagtattgctctactactcccatgacaccccacttgtccccttaa #### Dnmbp_ID8858_8 --> 2 - 0 Original Alignment tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagtgATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat Alignment from CESAR tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagtgATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat Alignment from Spaln_aa2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagTGATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat Alignment from Spaln_nt2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagTGATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat Alignment from Pairagon TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagTGATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat Alignment from Exonerate_protein2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagTGATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat Alignment from Exonerate_coding2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagTGATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat Alignment from GeneWise TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG ctttgttgtgggggaagggctgttgaccctgatccttccatcctctctagTGATTAAGTACCGCAAAGGGGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGCCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtgagctatgatttcatttatcagggtgcatccccatatacagagggtat #### Dnmbp_ID8865_3 --> 2 - 1 Original Alignment gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagaaGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGAC---CGCCCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAggtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct Alignment from CESAR gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagaaGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAggtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct Alignment from Spaln_aa2Genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagAAGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct Alignment from Spaln_nt2Genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagAAGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACC------ACCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGACC---GCCCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct Alignment from Pairagon GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagAAGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACC------ACCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGACC---GCCCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct Alignment from Exonerate_protein2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagAAGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct Alignment from Exonerate_coding2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagAAGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct Alignment from GeneWise GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgattgttgttgatgttctatatccagcactgcacttgcagAAGACTTGGTGATTCTTGATGACAGTGCTCCAACTGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCGTTACTACAGGCCCCAGAATACTCCCTGGGGCAGGCATGTGCCCTGATGGGCCTATCTTCCCAGCTGGATGAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAAGGCTTTGTAGAAGTATTGGGACCCCTAAGGACTGTGGATGAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAAGCAAAAAGTGGAGGTGACGAGGATGATCAGCAGTTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAGCTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGCAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCCCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAAGAAGCGAGACAGGAATCATGGGGTTGCGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCACGATCATGTGGCGCCTGAATGGACTGGGGATACAATCTCAGGTCAGGATAAGGATGCTTCAGGAAGCTCTCCTGATGTCGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCCGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAC---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTCTCCAAGCTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGACCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTCTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGATAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATGCTCAGAAGCATCAGACCTCTATGGAGAATACTGCGCGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATTCTAAGCTGACCCAGCAACTAATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAACCAGAAACAATTGTACGCCGTTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTCAGACCTCGTACCACTACACCAATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCGCTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCATCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGGGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATCCGGGATGTAGAACATGATCTTGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATCGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTCTAGAGCTTCAGCAACTAAGAGgtaaaaatgactataaatacacaaaggtcttactgcatgagaaactccct #### Dntt_ID8084_10 --> 0 - 0 Original Alignment CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa Alignment from CESAR CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa Alignment from Spaln_aa2Genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa Alignment from Spaln_nt2Genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa Alignment from Pairagon CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa Alignment from Exonerate_protein2genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa Alignment from Exonerate_coding2genome CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa Alignment from GeneWise CAGTTTGAGAGAGACTTGCGGCGCTATGCCACACACGAGAGGAAGATGATGCTGGACAACCACGCCCTGTATGACAGGACTAAG tactataaatactatattctgcaacagagagagccccttccaccttccagCAATTCGAGAGAGACTTACGGCACTATGCCACACATGAAAGGAAGATGATGTTGGACAATCATGCCCTATATGATCGAACTAAGgtaaggcccttttggattgactggatttgcccgtcagccctcttttcaaa #### Dock8_ID5378_3 --> 0 - 2 Original Alignment CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAgg gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGgggtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa Alignment from CESAR CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAgg gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGgggtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa Alignment from Spaln_aa2Genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGGGgtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa Alignment from Spaln_nt2Genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGGGgtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa Alignment from Pairagon CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGGGgtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa Alignment from Exonerate_protein2genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGGGgtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa Alignment from Exonerate_coding2genome CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGGGgtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa Alignment from GeneWise CCTCAGCTTTATGAGCCTGTCGAGCCAGTGGACTTTGAAGGACTCGTGATGACACACTTAAACAGCTTGGATGCAGAGCTGGCCCAGGAGCTGGGGGACCTCACCGATGACGACCTGCATGTGGCCTTCACACCCAAAGAATGTAGGACTTTGCAGCACTCTCTGCCAGAGGAAGG gggtgcaagcccatcaaattgcgtatcaaactcttcactgtcccttgcagCCTCAGCTCTATGAGCCTGATGAGCCAGTGGACTTTGAAGGCCTTGTAATGACACACTTGAACAGTTTAGATGCAGAGCTTGCCCAGGAGCTCGGGGACCTAACTGATGATGAACTGCATGTGGCATTCACATCCAAAGAATCTAGGACTTTGCAGCATTCTTTGTCAGAGGAGGGgtaagcaaaattgattagaccacgcaacctgttagtgtgtccttgggtaa #### Dock8_ID5385_8 --> 1 - 0 Original Alignment gTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaaggTTTGAGATTGAAATTCAACCTCTG---TTAAGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc Alignment from CESAR gTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaaggTTTGAGATTGAAATTCAACCTCTGTTA---AGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc Alignment from Spaln_aa2Genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaagGTTTGAGATTGAAATTCAACCTCTGTTA---AGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc Alignment from Spaln_nt2Genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaagGTTTGAGATTGAAATTCAACCTCTGTT---AAGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc Alignment from Pairagon GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaagGTTTGAGATTGAAATTCAACCTCTGTT---AAGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc Alignment from Exonerate_protein2genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaagGTTTGAGATTGAAATTCAACCTCTGTTA---AGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc Alignment from Exonerate_coding2genome GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaagGTTTGAGATTGAAATTCAACCTCTGTTA---AGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc Alignment from GeneWise GTTTGAGATTGAAATTGAACCTCTGTTTGCCAGTATTGCCCTCTATGACGTTAAAGAAAGGAAAAAG tcagacatgggctctccctactgtagatatctttttttcttctttttaagGTTTGAGATTGAAATTCAACCTCTGTTA---AGTATTGCCATCTATGATGCCAAAGAAAGGAAAAAGgtgagtccaacactaaaagcaacatgatatcctgtaaattccaggtagtc #### Dock8_ID5394_15 --> 1 - 0 Original Alignment aAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagaAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt Alignment from CESAR aAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagaAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt Alignment from Spaln_aa2Genome AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagAAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt Alignment from Spaln_nt2Genome AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagAAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt Alignment from Pairagon AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagAAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt Alignment from Exonerate_protein2genome AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagAAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt Alignment from Exonerate_coding2genome AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagAAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt Alignment from GeneWise AAACCTTCTGTACGTATACCCCCAGCGACTGAACTTCGCTAGCAAGCTAGCATCTGCCCGGAACATCACAATAAAGATTCAGTTTATGTGCGGAGAAGACCCCAGCAATGCTATGCCG gagtgaactctgcattgctatctattcactaacctccttttctttcttagAAACCTTCTGTATATATATCCCCAGCGACTGAACTTTGCTAGCAGGTTGGCATCTGCCCGTAACATCACAATAAAGATTCAGTTTATGTGTGGAGAAGACCCCAGCAATGCCATGCCTgtgagcgcctgctggatggagatgaccccagctatgcctgactgtaactt #### Dock8_ID5395_16 --> 0 - 2 Original Alignment GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACaagtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from CESAR GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATaa ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCA---AGGCCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACaagtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Spaln_aa2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAG---TCAAGGCCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Spaln_nt2Genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAA---GGCCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Pairagon GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAA---GGCCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Exonerate_protein2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from Exonerate_coding2genome GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc Alignment from GeneWise GTCATCTTTGGCAAGTCCAGTGGGCCTGAATTTCTGCAGGAAGTATATACAGCTATTACATACCATAATAA ttgtttgtagagccccaaaacatcccaacacagcagcacccctgtctcagGTGATCTATGGAAAGTCAAGG---CCCGAATTCCTGCAGGAAGTATATACAGCTATTACGTACCATAACAAgtgagtgaataggaatctcagactcctactatgaaaacctacacattctc #### Dock8_ID5397_18 --> 0 - 0 Original Alignment TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta Alignment from CESAR TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta Alignment from Spaln_aa2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta Alignment from Spaln_nt2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta Alignment from Pairagon TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta Alignment from Exonerate_protein2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta Alignment from Exonerate_coding2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta Alignment from GeneWise TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG tcttcaatctctgtgccaaccactcgtatgatttgaggttttcatcacagTGGTTGCCAATTCTGTTAAATGAACGTCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaggaagcaacgctttagctgaggtaaccagccctgccatactgctgta #### Dock8_ID5399_20 --> 0 - 1 Original Alignment GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAg tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAggtgagtggggatggaacataactagcagtagccgggcagcctggaaggca Alignment from CESAR GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAg tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAggtgagtggggatggaacataactagcagtagccgggcagcctggaaggca Alignment from Spaln_aa2Genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAGgtgagtggggatggaacataactagcagtagccgggcagcctggaaggca Alignment from Spaln_nt2Genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAGgtgagtggggatggaacataactagcagtagccgggcagcctggaaggca Alignment from Pairagon GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAGgtgagtggggatggaacataactagcagtagccgggcagcctggaaggca Alignment from Exonerate_protein2genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAGgtgagtggggatggaacataactagcagtagccgggcagcctggaaggca Alignment from Exonerate_coding2genome GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAGgtgagtggggatggaacataactagcagtagccgggcagcctggaaggca Alignment from GeneWise GATAACCACCTGGAGAAGTTCTTCACCCTTTGCCACTCCCTGGAGAGCCAGGTGAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACCGAGAGCACGCTGGAGCACGAGCTGAAACTCAGCATCATCTGCCTCAACTCCTCCCGCCTGGAGCCCCTCGTGCTCTTCCTCCACCTGGTGCTTGACAAGCTGTTCCAGCTTTCCGTGCAGCCCATGGTCATTGCTGGCCAAACAG tgctccatctttagacatagacgttgcacccttcctgcttcctcctctagGATAACCACCTGGAGAAGTTCTTCACGCTGTGCCACTCCCTGGAGAGCCAGGTCAGCTTCCCTATCCGTGTGCTGGACCAGAAGATCACTGAGAGCACGTTGGAGCATGAACTGAAACTCAGCATCATCTGCCTCAATTCCTCCCGCTTGGAGCCTCTGGTGCTTTTCCTCCACCTTGTGCTAGATAAGCTTTTCCAGCTTTCAGTCCAGCCCATGGTCATCGCTGGCCAAACAGgtgagtggggatggaacataactagcagtagccgggcagcctggaaggca #### Dock8_ID5400_21 --> 2 - 1 Original Alignment caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagcaAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAggtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa Alignment from CESAR caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagcaAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAggtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa Alignment from Spaln_aa2Genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagCAAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAGgtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa Alignment from Spaln_nt2Genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagCAAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAGgtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa Alignment from Pairagon CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagCAAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAGgtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa Alignment from Exonerate_protein2genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagCAAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAGgtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa Alignment from Exonerate_coding2genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagCAAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAGgtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa Alignment from GeneWise CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG taaagcttgaagtcttgacaacagtctgcccagcttccttcctgtctcagCAAACTTCTCCCAGTTTGCCTATGAGTCAGTGGTTCCCATTGCCAATAGCTTGCACAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCGTATGTGCAATATGTGTTCCGGCTACCAGAACTGCAAAGGGATACATCCAAATCAGgtgagtctttgttgagggggtggcaggggggctgaagttgggagtgggaa #### Dock8_ID5402_23 --> 0 - 0 Original Alignment ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac Alignment from CESAR ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac Alignment from Spaln_aa2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac Alignment from Spaln_nt2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac Alignment from Pairagon ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac Alignment from Exonerate_protein2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac Alignment from Exonerate_coding2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac Alignment from GeneWise ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG ctgctcatgatcttcaggaatgcctaacacggtgggtttctttgaaacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGCCCAGGCAACAGTGAAGTGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGTAAAAAAgtgagcaactcggcggaagaagagtagcttcaccccaaaggaggctcaac #### Dock8_ID5404_24 --> 0 - 0 Original Alignment CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc Alignment from CESAR CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc Alignment from Spaln_aa2Genome CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc Alignment from Spaln_nt2Genome CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc Alignment from Pairagon CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc Alignment from Exonerate_protein2genome CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc Alignment from Exonerate_coding2genome CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc Alignment from GeneWise CATTTCCATGAGGAGCTTGCCCTGCAGATGGTGGTCAGCACTGGAGTAGTGAGAGAAACGGTCTTCAAGTACGCCTGGTTCTTCTTTGAGCTTCTG aaacttatggagtaccatggcagtttggggcaacctgtttgtatctccagCATTTCCATGAGGAGCTCTCCCTGCAGATGGTTGTCAGCATTGGGGTAGTGAGAGAAACAGTGTTCAAATATGCTTCATTCTTCTTTGAGCTTCTGgtgagtttcttgggattacaccccgctctctttgtctaggcacagagagc #### Dock8_ID5408_27 --> 0 - 0 Original Alignment CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag Alignment from CESAR CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag Alignment from Spaln_aa2Genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag Alignment from Spaln_nt2Genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag Alignment from Pairagon CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag Alignment from Exonerate_protein2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag Alignment from Exonerate_coding2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag Alignment from GeneWise CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aatctgtagtcttactctagacatccctgaagctgtttctctttttacagCTGTCAACCAAGCTGAATATCCTCCCAATACTTATATCCATGTGGCAGGAATTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTTCTCTTTATGAATACAGACACTGCACCTGCGTCTCCCTGTCCCTCAACATCATCCCGGgtaacatactaactagaggaaagggatgaagtcactgtgtcatgaagtag #### Dock8_ID5409_28 --> 0 - 2 Original Alignment AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATgg tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATgggtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc Alignment from CESAR AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATgg tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATgggtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc Alignment from Spaln_aa2Genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc Alignment from Spaln_nt2Genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc Alignment from Pairagon AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc Alignment from Exonerate_protein2genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc Alignment from Exonerate_coding2genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc Alignment from GeneWise AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccagagacttatgttccaatagttgtgccccacaacttttctttcctagAACTCAAGTTCTTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAGCACTTCCTTACAGGGTTGCTCTTCACAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtattggtctgctatccaagatcgaacctgaaatcaaaggtgttatctcc #### Dock8_ID5412_31 --> 0 - 0 Original Alignment CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt Alignment from CESAR CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt Alignment from Spaln_aa2Genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt Alignment from Spaln_nt2Genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt Alignment from Pairagon CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt Alignment from Exonerate_protein2genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt Alignment from Exonerate_coding2genome CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt Alignment from GeneWise CCCTATAAGCAGTACAACATGCTGAATGCAGACACCACCCGCCACCTCATGATTTGCTTCCTGTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATCGCTGACCTGCCTTCCATGCAGCTCAATAGGATTCTGGACCTGCTGTTCATCTGTGTCTCCTGCTTTGAATACAAG tccactctcttgccatcctacctgaatctcttccacccgcttttccacagCCCTATAAGCAGTATAATATGCTGAATGCAGACGCTACTCGCCACCTCATGATCTGCTTTCTTTGGATCATGAAAAATGCTGATCAGAGCCTCATCAGGAAGTGGATTGCTGACCTGCCCTCCATGCAGCTCAACAGGGTTTTAGACCTGCTGTTCATCTGTGTCTCCTGTTTTGAATACAAGgtgacaggtgggggtggaacattttttagctgttccatttctgacttctt #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Spaln_aa2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca #### Dock8_ID5420_38 --> 0 - 2 Original Alignment GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACag ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACaagtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta Alignment from CESAR GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACag ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACaagtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta Alignment from Spaln_aa2Genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACAAgtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta Alignment from Spaln_nt2Genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACAAgtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta Alignment from Pairagon GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACAAgtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta Alignment from Exonerate_protein2genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACAAgtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta Alignment from Exonerate_coding2genome GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACAAgtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta Alignment from GeneWise GTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTACGACACAGTGAAGATGAGGGAATTCCAGGAAGACCCTGAGATGCTTATGGACCTCATGTACAG ctccatcagattgacatctttcggcgtatagcctttctcttcctctgcagGTGGAGGAACTTCTCTGCAATCTGAACAGCATTCTGTATGACACAGTCAAGATGAGGGAATTCCAAGAAGACCCTGAGATGCTTACAGATCTCATGTACAAgtacttaccctttagattaaaagcaattggactaagtgatagtgaagcta #### Dock8_ID5427_45 --> 0 - 0 Original Alignment TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat Alignment from CESAR TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat Alignment from Spaln_aa2Genome TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat Alignment from Spaln_nt2Genome TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat Alignment from Pairagon TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat Alignment from Exonerate_protein2genome TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat Alignment from Exonerate_coding2genome TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat Alignment from GeneWise TTCGTTTTGACTCCGATTGAGGTTGCCATTGAAGATATGAAGAAGAAGACCCTGCAGTTAGCCGTGGCCACTCACCAGGAGCCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAGGGCTCTGTAGGAGCCACTGTAAATCAG atcatacaggattgcaggccctgtacacttaaaaatatttcctctattagTTTGTCTTGACTCCAATTGAGGTTGCCATCCAAGATATGATGAAGAAAACCCTCCACTTAGCTGTAGCCACTCACCAGGAACCCCCTGATGCAAAGATGCTGCAAATGGTACTGCAAGGCTCTGTAGGAGCAACAGTAAATCAGgtccgcactagttattccaggcagcttagcatggggtggattgtttacat #### Dpf2_ID1303_10 --> 0 - 1 Original Alignment GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAg agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAggtaagtagcacacaccatctacatagactactttatcccaggaagtgcca Alignment from CESAR GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAg agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAggtaagtagcacacaccatctacatagactactttatcccaggaagtgcca Alignment from Spaln_aa2Genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtaagtagcacacaccatctacatagactactttatcccaggaagtgcca Alignment from Spaln_nt2Genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtaagtagcacacaccatctacatagactactttatcccaggaagtgcca Alignment from Pairagon GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtaagtagcacacaccatctacatagactactttatcccaggaagtgcca Alignment from Exonerate_protein2genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtaagtagcacacaccatctacatagactactttatcccaggaagtgcca Alignment from Exonerate_coding2genome GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAG agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGgtaagtagcacacaccatctacatagactactttatcccaggaagtgcca Alignment from GeneWise GACCAGCTACTTTTCTGTGATGACTGTGACCGTGGCTACCACATGTACTGTCTCACTCCTTCCATGTCTGAGCCTCCTGAAGGAAG agcctgggaacacatataaagcatacaccctcctgcctcttggtccccagGGACAGCTACTTTTTTGTGATGATTGTGACCGTGGCTACCACATGTTCTGTCCCACTCCTTCCATATCTGAGCCTCCTAAAGGTAAgtagcacacaccatctacatagactactttatcccaggaagtgcca #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagggCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagggCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctactctgcaccctggtttgcaattcagcatcccattatctcacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTGTTGAATGTAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaagagtcattgggccagctaggcctccacgcttcaatagatgacacct #### Dpp3_ID737_16 --> 0 - 1 Original Alignment GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAg ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGggtgagtagttacaccatttgattgaccaacagccctgaacttggactgag Alignment from CESAR GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAg ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGggtgagtagttacaccatttgattgaccaacagccctgaacttggactgag Alignment from Spaln_aa2Genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtgagtagttacaccatttgattgaccaacagccctgaacttggactgag Alignment from Spaln_nt2Genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtgagtagttacaccatttgattgaccaacagccctgaacttggactgag Alignment from Pairagon GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtgagtagttacaccatttgattgaccaacagccctgaacttggactgag Alignment from Exonerate_protein2genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtgagtagttacaccatttgattgaccaacagccctgaacttggactgag Alignment from Exonerate_coding2genome GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtgagtagttacaccatttgattgaccaacagccctgaacttggactgag Alignment from GeneWise GTGCTGAAGTCCACGGGGGACGTGGTCGCGGGGCGGGCCCTGTACGAGGGCTATGCAGCAGTCACTGACGCACCTCCAGAGTGCTTCCTTACCCTAAGGGATACGGTACTGCTGCGCAAGGAGTCCCGGAAGCTTATTGTTCAACCCAACACTCGCCTTGAAG ggtaccatacgggtgagttcccgtgaaatcctaccctttcgccaccgcagGTTCTAAAGTCCACAGGGGATGTCGTGGCAGGGCGGGCCCTGTATGAAGGCTATGCAGCTGTCACTGATGCCCCTCCAGAGTGCTTTCTTAGC---AGGGATACAGTACTGCTGCATAAGGAATCCCGAAAGCTCATTGTTAAACCTAATACATGCCTTGAGGgtgagtagttacaccatttgattgaccaacagccctgaacttggactgag #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa #### Dpp3_ID744_9 --> 2 - 1 Original Alignment gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagggTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATtgtaaccctttcccttcagtaccaatccagtctacttctgattttgctaat Alignment from CESAR gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagggTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATtgtaaccctttcccttcagtaccaatccagtctacttctgaagtgcctttt Alignment from Spaln_aa2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATTgtaaccctttcccttcagtaccaatccagtctacttctgattttgctaat Alignment from Spaln_nt2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATTgtaaccctttcccttcagtaccaatccagtctacttctgattttgctaat Alignment from Pairagon GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATTgtaaccctttcccttcagtaccaatccagtctacttctgattttgctaat Alignment from Exonerate_protein2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATTgtaaccctttcccttcagtaccaatccagtctacttctgattttgctaat Alignment from Exonerate_coding2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATTgtaaccctttcccttcagtaccaatccagtctacttctgattttgctaat Alignment from GeneWise GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atgcatctgtagcccagggtgtttgcaatggttaattcttccctccccagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACAAGTGCTGAACAGTTGCTGAGGGAGTTGCCACGGCCTCTTGCCTTTGAAAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCTGGCATACCTGCAGGCATCAACATCCCCAATTgtaaccctttcccttcagtaccaatccagtctacttctgattttgctaat #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAaggtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAaggtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgaggggatcaatcaaagtgaggattgtttgtttgttttcattttagGCCTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGATCAATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtggggtgccaaccaaggctccaaccccccgatctctcttccaatgcact #### Dtx4_ID3396_8 --> 0 - 0 Original Alignment GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg Alignment from CESAR GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg Alignment from Spaln_aa2Genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg Alignment from Spaln_nt2Genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg Alignment from Pairagon GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg Alignment from Exonerate_protein2genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg Alignment from Exonerate_coding2genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg Alignment from GeneWise GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA ttcagcacatttttcatttcatcaaatcaagatttacttttctttcatagGGGCCAGAACATCCAAATCCTGGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtatggtcagcaaggtagctcacatttgttttgtattaggcctgagtatg #### Dtx4_ID3401_3 --> 1 - 1 Original Alignment gGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAg ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttaggGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAggtaggtgctgatctcattttatctcattgacctacgggttacctatttca Alignment from CESAR gGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAg ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttaggGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAggtaggtgctgatctcattttatctcattgacctacgggttacctatttca Alignment from Spaln_aa2Genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttagGGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAGgtaggtgctgatctcattttatctcattgacctacgggttacctatttca Alignment from Spaln_nt2Genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttagGGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAGgtaggtgctgatctcattttatctcattgacctacgggttacctatttca Alignment from Pairagon GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttagGGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAGgtaggtgctgatctcattttatctcattgacctacgggttacctatttca Alignment from Exonerate_protein2genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttagGGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAGgtaggtgctgatctcattttatctcattgacctacgggttacctatttca Alignment from Exonerate_coding2genome GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttagGGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAGgtaggtgctgatctcattttatctcattgacctacgggttacctatttca Alignment from GeneWise GGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGCCTTGGCAG ctggcacattttgttatgtcagaatgatcctatctgtaatactcttttagGGTTCCCACTGTGCCTGTAAAAAATTTGAATGGGTCCAGCCCCGTTAATCCTACCTTGGCAGgtaggtgctgatctcattttatctcattgacctacgggttacctatttca #### Dtx4_ID3404_2 --> 2 - 2 Original Alignment ggACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCgg ggctcatggcagggtacagagtaggactaatattgatttttgccatgcaggcACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTgggtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca Alignment from CESAR ggACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCgg ggctcatggcagggtacagagtaggactaatattgatttttgccatgcaggcACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTgggtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca Alignment from Spaln_aa2Genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcatggcagggtacagagtaggactaatattgatttttgccatgcagGCACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTGGgtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca Alignment from Spaln_nt2Genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcatggcagggtacagagtaggactaatattgatttttgccatgcagGCACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTGGgtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca Alignment from Pairagon GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcatggcagggtacagagtaggactaatattgatttttgccatgcagGCACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTGGgtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca Alignment from Exonerate_protein2genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcatggcagggtacagagtaggactaatattgatttttgccatgcagGCACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTGGgtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca Alignment from Exonerate_coding2genome GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcatggcagggtacagagtaggactaatattgatttttgccatgcagGCACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTGGgtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca Alignment from GeneWise GGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGGAATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTATGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATGGGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGGTCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACCACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGGCCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAGCAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAGACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAGACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGGTGCTGATTGCCTCCGG ggctcatggcagggtacagagtaggactaatattgatttttgccatgcagGCACTCTCCGCCCAGTTCGGCGTAACTACTATGACCTGTCCTCTGCACCTGGCAAGGGGGTTGTGTGGGAAAGGGAGAATGAAAATGGTTCCTGGACTCCTTATGACATGGAAGTTGGTATTACCACGCAGTATGCTTATGAAAAGCAGCCCCCATGGATTGATCTCACCTCTATTGGCTTCAGCTATATAATAGACTTCAGTACCATGAGCCAGATCAACAGGCAGACTCAACGCCAGCGCCAGGTCAGACGTAGACTAGACCTCATTTACCCCATGGTTACAGGCACTATGCCAAGGATCCAGTCCTGGCCAGTGAGTCCTGGACCTGCAACATCCTCACCTGCACCACCTTGTTCTTGTCCACAGTGTGTCTTAGTAATGAGTGTCAGGGCTGCTGTGGCTCATGGGGGTACAGGTCCTCCAGCAGTGTGTAAGAATATGCCCCTGTCTGGAGTTGGCAAG------CAGCCACCCAGTCCAGGAACAAGGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACATCCCCATTGGAAGATATCCGAAGACAAGTTTCTAACGCTCCAGCTGGAGCGACCATAGGCTCCCCTGCCATCCCTCAAGGAAGCAAGAGGAAGACTGGAAGAGCAGCAGTGGCTACTTTGAACAGGTCCAACCTTCAGCAACTTGCCATTGCCCAGTCCCGGGTGCTGATTGCATGTGGgtgagcgtgactcaacagtgcatttaagtgtaaaattacaagcattttca #### Eef1g_ID2564_6 --> 0 - 1 Original Alignment GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATggtaagatagaataactataggcaaaaatggttaatgtccagctgggatta Alignment from CESAR GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATggtaagatagaataactataggcaaaaatggttaatgtccagctgggatta Alignment from Spaln_aa2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtaagatagaataactataggcaaaaatggttaatgtccagctgggatta Alignment from Spaln_nt2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtaagatagaataactataggcaaaaatggttaatgtccagctgggatta Alignment from Pairagon GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtaagatagaataactataggcaaaaatggttaatgtccagctgggatta Alignment from Exonerate_protein2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtaagatagaataactataggcaaaaatggttaatgtccagctgggatta Alignment from Exonerate_coding2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtaagatagaataactataggcaaaaatggttaatgtccagctgggatta Alignment from GeneWise GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtccttgcaggtcttagaggtgattttgatgatttttcagGTCTTAGAGCCTTCCTTTCGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATGgtaagatagaataactataggcaaaaatggttaatgtccagctgggatta #### Eef1g_ID2566_8 --> 1 - 1 Original Alignment tACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTg cagtcccactaatgctcccacagataactctctctctctctcctgtgcaggACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTggtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga Alignment from CESAR tACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTg cagtcccactaatgctcccacagataactctctctctctctcctgtgcaggACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTggtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga Alignment from Spaln_aa2Genome TACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactaatgctcccacagataactctctctctctctcctgtgcagGACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga Alignment from Spaln_nt2Genome TACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactaatgctcccacagataactctctctctctctcctgtgcagGACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga Alignment from Pairagon TACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactaatgctcccacagataactctctctctctctcctgtgcagGACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga Alignment from Exonerate_protein2genome TACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactaatgctcccacagataactctctctctctctcctgtgcagGACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga Alignment from Exonerate_coding2genome TACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactaatgctcccacagataactctctctctctctcctgtgcagGACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga Alignment from GeneWise TACCTTTGTGTTGGATGAGTTTAAGCGTAAGTACTCCAATGAGGACACCCTCTCTGTGGCACTGCCATATTTTTGGGAGCACTTTGATAAAGATGGCTGGTCCCTGTGGTATGCCGAGTACCGCTTCCCTGAAGAGCTGACCCAGACCTTCATGAGTTGCAACCTCATCACTG cagtcccactaatgctcccacagataactctctctctctctcctgtgcagGACCTTTGTGTTAGATGAGTTTAAGCATAAATATTCCAATGAGGACACACTGTCTGTGGCACTACCATACTTTTGGGAGTACTATGACAAAGATGGCTGGTCGCTGTGGTATGCTGAGTACTGCTTCCCCAAGGAGCTGACCCAGACCTTCATGAGTTGCACCCTGATCACTGgtgagcagcggagttggtttgggaagaaggataaacaaaggtagtaggga #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGg gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAggtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca Alignment from CESAR GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGg gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAggtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAGgtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAGgtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca Alignment from Pairagon GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAGgtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAGgtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca Alignment from Exonerate_coding2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAGgtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca Alignment from GeneWise GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCCAGCACTGCCGGG gtagctaaccaagatggcaataatgatgatataactgggatcttttgcagGAGTGTACAGATGGCTGTGAGTGGGATGCAGATAGCCAACACTGCCAAGgtaagtccttgtttgggtcctacctatgctctctgtaactagaagattca #### Efemp2_ID1031_4 --> 2 - 1 Original Alignment atGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGg catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagatGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTcgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat Alignment from CESAR atGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGg catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagatGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTcgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat Alignment from Spaln_aa2Genome ATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGG catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagATGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTCgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat Alignment from Spaln_nt2Genome ATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGG catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagATGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTCgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat Alignment from Pairagon ATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGG catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagATGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTCgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat Alignment from Exonerate_protein2genome ATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGG catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagATGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTCgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat Alignment from Exonerate_coding2genome ATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGG catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagATGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTCgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat Alignment from GeneWise ATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAATGTGTGG catgtcgaaagcaactggatgccttcaacgcttatgtctttaaaaaccagATGTTGAAGAGTGTACCCAGGCCTTACATGACTGCCGCCCTAGTCAGGAGTGCCATAACCTGCCTGGATCATACCAATGCACCTGCCCTGATGGTTACCAAAAAATAGGGCCTGAATGTGTTCgtgaggttgtgagaaaatagaaacatacaggtggtttggctgtcttccat #### Efemp2_ID1034_7 --> 2 - 1 Original Alignment atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg ccccaaattttccccactaccaatggtctgatttataatttacttttcagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAggtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga Alignment from CESAR atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg ccccaaattttccccactaccaatggtctgatttataatttacttttcagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAggtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga Alignment from Spaln_aa2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccaaattttccccactaccaatggtctgatttataatttacttttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga Alignment from Spaln_nt2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccaaattttccccactaccaatggtctgatttataatttacttttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga Alignment from Pairagon ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccaaattttccccactaccaatggtctgatttataatttacttttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga Alignment from Exonerate_protein2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccaaattttccccactaccaatggtctgatttataatttacttttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga Alignment from Exonerate_coding2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccaaattttccccactaccaatggtctgatttataatttacttttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga Alignment from GeneWise ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG ccccaaattttccccactaccaatggtctgatttataatttacttttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGTCAATACCGCTGTGTAAATGAGCCTGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCTACAAGGCTCTGCCAAGgtgagtatgctcaggtggacaggacacaaacagcccataacttaccatga #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagaaTGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGgtgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagaaTGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGgtgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcaggtGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg Alignment from CESAR gtGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcaggtGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcagGTGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcagGTGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg Alignment from Pairagon GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcagGTGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcagGTGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg Alignment from Exonerate_coding2genome GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcagGTGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg Alignment from GeneWise GTGGGCCCCCTCCTACTGAGGAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG acggaatttctgttattcactgggagggtttttttttttaaccttttcagGTGGGCCACCACCAACTGAAAAGTCATCACCTAGCCTGGAGGAAGAGACAGGGCTGgtatgtatcggtaggtgggttagtggctgtgttactttcctgactggctg #### Ehbp1l1_ID1223_12 --> 0 - 0 Original Alignment GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGTG---CCCCCCCGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag Alignment from CESAR GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGTGCCC---CCCCGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag Alignment from Spaln_aa2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGTG---CCCCCCCGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag Alignment from Spaln_nt2Genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGACC---ACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGT---GCCCCCCCGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag Alignment from Pairagon GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGACC---ACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGTGCCC---CCCCGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag Alignment from Exonerate_protein2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGTG---CCCCCCCGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag Alignment from Exonerate_coding2genome GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGTG---CCCCCCCGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag Alignment from GeneWise GCTTTTGATGGCTTCGCTGCCCTGGGTGTGTCTCGGCTGCTCGAGCCGGCGGACATGGTACTTCTGTCCGTACCTGACAAGCTCATCGTCATGACGTACCTGTGCCAGATCCGTGCCTTCTGCACTGGGCAGGAGCTGCAGCTGGTGCAACTGGAGGGCGGCGGTGGCTCTGGCACTTATCGTGTGGGCAACGCCCAGCCGAGCCTGCCCGACTGTCTGGACGCAGGAGACCTGGCGCAGCGATTACGCGAGCATGGGGCTGAAGTGCCCACAGAACCTAAGGAGGCTGTGAACCGCGGGACTGGGGCAATACCAAAGGTGGCCTCCAGGGACACGGACCTGAGCTGCTCCTCTAAGGATGGGGAGGCAGAGGTTGCCCAGGAAGCAATCCCTCAAGAGGCGCCCACCGACGGCCCTAGAGCCAGGTCGTCCACAACCCCGGTGGTCCCTGCAGAGGGGCTGGTGAACGGAGTGGGGGCGTCAGGTGGTGTGAGTGGTGTGAGACTGAGACGGTCCTCTGTCAATGGGGAGGCTGGGCCAGTACCTCCACCCCGAGCACATGGCTCTTTCTCCCACGTGCGGGACGCCGATTTGCTAAAGAAGAGGCGATCGAGGTTAAGGAATAGCAACTCTTTCTCTGTGGATGACCAGGACTCTGGAGCTGCAGTTGGAGCAGGGCCTGCAGGGCCTGGAGCTGTG tctctatgaagctgtattagatacaccttcactggatcctactaccacagGCTTTTGAAGGCTTTGGTACTCTTAGTGTATCTAGGCTGCTTGAGCCAGCAGACATGGTAGTTCTGTCAGTACCTGACAAGCTCATTGTCATGACATACTTGTTGCAGATCCGCGCCTTCTGTACAGGGCAAGAGCTGCAACTAGTTCAGCTGGAGGGTGGTGGTGGTTCAGGGACTCATCGTGTGGACAACACTCAGCTCAGCCTGCCAGACTGCCTTGATGTAGGAGACCTGGCGCAGCAATTAAAAGAGCATGGGGCTGAAGTGCCTACAGAACCTAAGGAGGCTGTGAACTGTGGGACTGGGGCAATACCGAAGGTAGCCTCCAGGGACATGGAC---CACTGTTCCTCTAAGGATGGGGAGGCAGAGGTTGCACAGGAAGCAATCCCCCAAAAGCCCCCCACTGATGGACCAAGAGCCAGATTGTCCACAACCCCTGTAGTTCCTGCAGAGGGGTTAGTAAATGGATTGGAGTCGTCAGGAGGAGTAAGTGGTGTAAGGCTGAGATGGTCATCCATCAATGGAGAGACTGGGCCAGTGCCCCCC---CGAGCATATGGCTCCTTCTCGCATGTG------------TTGCTAAAGAAGAGGCGATCCAGGTTAAGGAACAGCAACTCTTTTGCTGTAGATGACCGGGACTCTGGAACCACAGTTGGAGCTGGGCCTGCCGGACCTGGAGCTGTTgtaagaactaccattttgctgctgcacaaaacattgtcaagctttaggag #### Ehd1_ID1563_4 --> 0 - 0 Original Alignment GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTC---CCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCA---ATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt Alignment from CESAR GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCAATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt Alignment from Spaln_aa2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCAATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt Alignment from Spaln_nt2Genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCAATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt Alignment from Pairagon GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCAATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt Alignment from Exonerate_protein2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCAATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt Alignment from Exonerate_coding2genome GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCAATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt Alignment from GeneWise GTCCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAATGTTTTCGGGAAAGAGAGCAAGAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGGGAGCACCAGATCTCCTCCGGCGACTTCCCAAGCCTGCGTAAGATGCAG aagggtcggatgccaagctagtcccacacatattttctttcatcatctagGTCCATGCCTATATTATCAGCACTCTCAAGAAGGAGATGCCCAATGTGTTTGGAAAA---AGCAAGAAGAAAGAACTAGTGAACAACCTAGGAGAGATCTACCAAAAAATTAAGCAGGAGCACCAGGTCTCCTCTGGTGACTTCCCTCCAATGCGTAAGATGCAGgtatgtacattcatccagcctgttcagctgcatttgctgtctggtacttt #### Eif3a_ID13311_19 --> 1 - 1 Original Alignment gGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAg aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcaggGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAA---GGCTGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCCC------------ATGAAGCCTggtatggttctgggtttaaaattctaattgtctgtcaccaggtcacaatag Alignment from CESAR gGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAg aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcaggGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAAGGC---TGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCCC------------ATGAAGCCTggtatggttctgggtttaaaattctaattgtctgtcaccaggtcacaatag Alignment from Spaln_aa2Genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcagGGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGAC------------AGGATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAAGGC---TGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCCCATGAAGCCTGGTATGGTTCTGGgtttaaaattctaattgtctgtcaccaggtcacaatag Alignment from Spaln_nt2Genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTT GTCAAGCCAG aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcagGGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAAG---GCTGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCCCATGAAGCC--TGgtatggttctgggtttaaaattctaattgtctgtcaccagGTCACAATAG Alignment from Pairagon GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcagGGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAAG---GCTGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCC------------CATGAAGCCTGgtatggttctgggtttaaaattctaattgtctgtcaccaggtcacaatag Alignment from Exonerate_protein2genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcagGGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGAC------------AGGATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAAGGC---TGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCCCATGAAGCCTGGTATGGTTCTGGgtttaaaattctaattgtctgtcaccaggtcacaatag Alignment from Exonerate_coding2genome GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcagGGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGAC------------AGGATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAAGGC---TGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCCCATGAAGCCTGGTATGGTTCTGGgtttaaaattctaattgtctgtcaccaggtcacaatag Alignment from GeneWise GGAGTGGAGACGAGAAACTCGGGATGATGAGAGGCCTCACAGGAGAGATGAGGATCGGCTGAGGCGCTTGGGGGGTGACGATGAAGAGAGAGAGTCTTCTCTTAGACCGGATGATGATCGTATCCCCAGGCGTGGCCTGGATGATGACAGAGGGCCTAGACGTGGTCCCGATGAAGATAGATTTTCTCGTAGAGGAACAGATGATGACCGTCCTTCCTGGCGTAATGCAGATGATGATAGGCCTCCCAGGCGAATTGGTGATGATGACAGGGGAAGCTGGCGTCACACAGATGACGACAGACCACCCAGACGGGGACTGGATGATGAGAGAGGAAGCTGGCGTACAGCAGATGAGGACAGAGGACCTAGACGAGGGATGGATGATGACCGGGGGCCAAGACGAGGAGGTGCTGATGATGAACGGTCATCCTGGCGGAATGCTGATGATGATAGGGGTCCCAGGAGAGGCATGGATGATGATAGGGGTCCCAGGCGAGGGCTGGATGATGACCGAGGACCTTGGAGGAATGCTGCTGAAGATAGGATTTCCAGGAGAGGTGCAGATGATGACCGAGGGCCTTGGAGAAATATGGATGATGATAGGGTTCCTAGAAGGGGTGATGATGCAAGACCTGGTCCTTGGAGACCATTTGTCAAGCCAG aatatgtaatacatagtagaaccaggcaattcttttcacatttgctgcagGGAATGGCAACAGGAGACTCGGGATGATGACAGGCCTCACAGAAAGGATGAGGATCGATTGAGACGCTTGGGAGGTGATGATGAGGAAAGTGAGTCCTCTCTTAGACCAGATGATGATCGTATCCCCAAACATGGCCTAGATGAT------GGGCCGAGACGTGGTCCTGATGAAGATAGATTCTCACGTAAAGGAACAGATGATGATCGTCCTTCCTGGCGTAATTCAGATGATGACAGG------------ATTGGTGATGACGATAAGGGAAGTTGGCATCATATGGATGATGACCGACCACCCAGATGGGGACTGGAAGATGAAAAAGGC---TGGCGTACAGCAGATGAGGACAAAGGGCCAAGGCAAGGGATGGATGATGATCGAGGGCCACGACAAGGAGGTGCTGATGATGAACAATTATCCTGGCGGAATGCTGATGATGACAGGGGGCCCCGGAGGGGCATGGATGATGACGGTGGACCAAAACATGGACTGGATGATGACCAGAGCCCTTGGAGGAATGCTGCAGAAGATAGGATTTCCAGGAGAGGATTGGATGACGACAGAGGTCCCTGGAGAAATATGGATGATGATAGAGTTCTTATAAGGGATGATGATGCAAGACCTGGTCCCATGAAGCCTGGTATGGTTCTGGgtttaaaattctaattgtctgtcaccaggtcacaatag #### Eif3a_ID13313_17 --> 2 - 0 Original Alignment agCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagaaCGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct Alignment from CESAR agCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagaaCGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct Alignment from Spaln_aa2Genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagAACGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct Alignment from Spaln_nt2Genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagAACGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct Alignment from Pairagon AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagAACGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct Alignment from Exonerate_protein2genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagAACGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct Alignment from Exonerate_coding2genome AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagAACGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct Alignment from GeneWise AGCGAGAAGAAAGAGAACGTGCTGAGAGAGCAAAACGGGAGGAAGAACTTAGAGAGTATCAGGAGCGAGTCAAGAAACTAGAAGAAGTAGAAAGGAAAAAGCGGCAAAGAGAGCTGGAAATTGAAGAAAGGGAAAGGCGCAGAGAGGAAGAAAGGAGACTTGGTGATGATCCACTTTCTAGGAAG gtaggagtattgggtggggagcatactgctgggtttccccttgattccagAACGAGAAGAGAGAGAACGCGCTGAAAGAGCAAAACGGGAAGAAGAACTTAGAGAATATCAGGAACGGGTTAAGAAGCTAGAAGAAGTTGAAAGGAAAAAACGGCAAAGAGCACTAGAAATTGAAGAGAGGGAAAGGCGTAGGGATGATGAAAGGAGACTTGGGGACGACCTACTTCCGAGGAAGgtacagatagctgacatctcatcacttgttcctggatgtgtatgaaccct #### Eif3a_ID13318_12 --> 0 - 0 Original Alignment CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCGC------------AATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAACTT---------------GAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt Alignment from CESAR CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCGC------------AATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAACTT---------------GAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt Alignment from Spaln_aa2Genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCGC------------AATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAACTT---------------GAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt Alignment from Spaln_nt2Genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCG------------CAATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGT------GCGGTTGGAGCAAATCAAGAACACAGA---------------ACTTGAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt Alignment from Pairagon CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCGC------------AATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGT------GCGGTTGGAGCAAATCAAGAACACAGA---------------ACTTGAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt Alignment from Exonerate_protein2genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCGC------------AATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAACTT---------------GAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt Alignment from Exonerate_coding2genome CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCGC------------AATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGTG------CGGTTGGAGCAAATCAAGAACACAGAACTT---------------GAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt Alignment from GeneWise CAAGAGAAAGAAGAACAGCATCAATTGGCAGTTAATGCATATCTTAAAAATTCAAGAAAAGAGCACCAGAGGATCCTGGCTCGGAGACAGACAATTGAGGAAAGAAAAGAGCGTCTTGAGAGTCTGAATATTCAACGTGAGAAGGAAGAACTCGAGCAGAGGGAAGCTGAACTCCAGAAAGTACGAAAGGCTGAAGAAGAAAGGCTGCGCCAAGAGGCAAAGGAGCGAGAGAAGGAACGAATCCTTCAAGAACACGAGCAAATCAAGAAGAAAACTGTTCGGGAGCGGTTAGAGCAGATCAAGAAGACAGAGCTGGGCGCCAAAGCATTTAAAGATATTGACATTGAA atcatatgatcattatatgaaaatgtaatttctatctttctatctcccagAAAGACAAAGAAGATCAGCATCAATTGACCATTAATGCATACCTTAAAAATTCAAGAAAAGAGGACCAGAGGATCCTAACTCAGAGACAGACAATTGATGAGAGAAAAGAGCGC------------AATATCCAACATGAGCAAGCAAAACTTGAGCAGAGAGAAGCTGAACTCCAAAAAGTGCGGAAACCTGAAGAAGAAAGGCTCCACCAAGAGGCAAAGGAACGAGAGAAAGAGCGAATCTTCCAAGATCACAAGCAACTCAAGAAGAAAACTGTGCGG------TTGGAGCAAATCAAGAACACAGAACTT---------------GAAGATATTGACATTGAAgtaagatagtttctttatgcctgggatcccattttattaatttttcggtt #### Eif3a_ID13320_10 --> 0 - 0 Original Alignment GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgcaggagttacaaagaaggatggcagagtggtagaaatttgagtactgaa Alignment from CESAR GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgcaggagttacaaagaaggatggcagagtggtagaaatttgagtactgaa Alignment from Spaln_aa2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgcaggagttacaaagaaggatggcagagtggtagaaatttgagtactgaa Alignment from Spaln_nt2Genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgcaggagttacaaagaaggatggcagagtggtagaaatttgagtactgaa Alignment from Pairagon GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgcaggagttacaaagaaggatggcagagtggtagaaatttgagtactgaa Alignment from Exonerate_protein2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgcaggagttacaaagaaggatggcagagtggtagaaatttgagtactgaa Alignment from Exonerate_coding2genome GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGgcaggagttacaaagaaggatggcagagtggtagaaatttgagtactgaa Alignment from GeneWise GTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTCTGGTTCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAG------ ctcctgtgttatggaatgatgtccatacgaccaagagtgctttgttccagGTGGCACAGATTTATCAGAGCATTGAGTTTTCTCGTTTGACTTCTTTGGTGCCTTTTGTTGATGCTTTCCAACTGGAACGGGCCATAGTAGATGCAGCCAGGCACTGTGACCTGCAGGCAGGAgttacaaagaaggatggcagagtggtagaaatttgagtactgaa #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAggtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAggtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG ccacaccacctctgcaatccattccatcttgtgctatttgctttatttagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTTCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATTCTTACCTGGGATCAGAGTATCTCAGATTCTAGGACTACAGGCAGGGGAGGAGCAAAAGgtgaggtgaggcaggtgttgggaacactgtatctcagatgagagactcag #### Eml3_ID2517_16 --> 0 - 2 Original Alignment GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGag cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGaggtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from CESAR GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGag cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGaggtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Spaln_aa2Genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Spaln_nt2Genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Pairagon GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Exonerate_protein2genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Exonerate_coding2genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from GeneWise GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc #### Eno4_ID12833_5 --> 2 - 0 Original Alignment gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from CESAR gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Spaln_aa2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Spaln_nt2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Pairagon GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Exonerate_protein2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Exonerate_coding2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from GeneWise GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg #### Entpd1_ID8007_2 --> 2 - 0 Original Alignment atTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG agtcaactccattgtttcgttaggtctttcacttttgtgttcttttgcagatTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat Alignment from CESAR atTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG agtcaactccattgtttcgttaggtctttcacttttgtgttcttttgcagatTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat Alignment from Spaln_aa2Genome ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG agtcaactccattgtttcgttaggtctttcacttttgtgttcttttgcagATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat Alignment from Spaln_nt2Genome ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG agtcaactccattgtttcgttaggtctttcacttttgtgttcttttgcagATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat Alignment from Pairagon ATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG agtcaactccattgtttcgttaggtctttcacttttgtgttcttttgcagATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat Alignment from Exonerate_protein2genome GATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG agtcaactccattgtttcgttaggtctttcacttttgtgttcttttgcaGATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat Alignment from Exonerate_coding2genome GATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG agtcaactccattgtttcgttaggtctttcacttttgtgttcttttgcaGATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat Alignment from GeneWise GAAGATATAAAGGATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCACCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGTTAAG caactccattgtttcgttaggtctttcacttttgtgt---TCTTTTGCAGATTCCAAAGTTCAAAGATTCTGTTCCAAAAATATTCTGATCATCCTTGGTTTTACCGCGATCTTGGCTGTGATAGCATTGATAGCGGTGGGCTTGACCCAGAATAAACCTTTGCCAGAAAATGTTAAGgtgggcgaaatttcaaacagtatgaattcccgactttatcatttattgat #### Entpd1_ID8009_4 --> 2 - 2 Original Alignment gtCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTag tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagggTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTaggtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca Alignment from CESAR gtCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTag tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagggTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTaggtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca Alignment from Spaln_aa2Genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTAGgtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca Alignment from Spaln_nt2Genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTAGgtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca Alignment from Pairagon GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTAGgtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca Alignment from Exonerate_protein2genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTAGgtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca Alignment from Exonerate_coding2genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTAGgtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca Alignment from GeneWise GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttttcttctaaaagtttacctcccttcttcctcccacagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGCGCATACTTGGCTGAATGTATGGAACTGTCCACTGAGCTGATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACGCGCTTGCTTAGgtgagttttcacacttgatttgggatgtatggcagtatggaattgtatca #### Entpd1_ID8014_8 --> 0 - 0 Original Alignment GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGCA---TCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGAG------ACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta Alignment from CESAR GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGCA---TCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGAG------ACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta Alignment from Spaln_aa2Genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGCA---TCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGAG------ACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta Alignment from Spaln_nt2Genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGC---ATCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGA------GACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta Alignment from Pairagon GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGCA---TCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGA------GACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta Alignment from Exonerate_protein2genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGCA---TCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGAG------ACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta Alignment from Exonerate_coding2genome GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGCA---TCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGAG------ACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta Alignment from GeneWise GCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGAAAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGAG tttgtccttgtgttattagacacatccctctttttcctatgtgtccccagGCA---TCTGCTTTATACTTTGTGATGGACTTTTTTGAGAAAGTAGCTAAAAACAGTCTTCTCTCTCAGGAG------ACTGACATAACCAAAAATTGCTGCTCAAAATCTTGGGAAGAGgtaagtgaccatagaccatggggcactggttatggttccttatcagtgta #### Entpd1_ID8015_9 --> 0 - 0 Original Alignment ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt Alignment from CESAR ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt Alignment from Spaln_aa2Genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt Alignment from Spaln_nt2Genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt Alignment from Pairagon ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt Alignment from Exonerate_protein2genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt Alignment from Exonerate_coding2genome ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt Alignment from GeneWise ACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATCCTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAG gcctaccagtttgcccttaaactcagccaatctgtaattgcacctttcagACAGAGACATCGTATCCATCAATAAAAGAGAAGTACCTGAGTGAGTACTGCTTCTCAGGTGCTTTTATCCTATCACTTCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAAACCCATTTTATGGGCAAAgtgaggtacagatgtattgaaaggttcacattgacccctttagtctaatt #### Entpd7_ID8794_3 --> 1 - 1 Original Alignment gTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAg atgggtcacctctaaggggctggtgattattcctatttcaaaccttacaggTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAggtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt Alignment from CESAR gTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAg atgggtcacctctaaggggctggtgattattcctatttcaaaccttacaggTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAggtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt Alignment from Spaln_aa2Genome GTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAG atgggtcacctctaaggggctggtgattattcctatttcaaaccttacagGTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAGgtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt Alignment from Spaln_nt2Genome GTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAG atgggtcacctctaaggggctggtgattattcctatttcaaaccttacagGTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAGgtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt Alignment from Pairagon GTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAG atgggtcacctctaaggggctggtgattattcctatttcaaaccttacagGTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAGgtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt Alignment from Exonerate_protein2genome GTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAG atgggtcacctctaaggggctggtgattattcctatttcaaaccttacagGTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAGgtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt Alignment from Exonerate_coding2genome GTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAG atgggtcacctctaaggggctggtgattattcctatttcaaaccttacagGTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAGgtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt Alignment from GeneWise GTATTTGGCTCGGGTAGGAGACCTGGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGACTCGTGGTGGACTGTGGTAGCAGCGGCTCCCGGATTTTTGTTTACTTCTGGCCAAGGCATAATGGGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGACCGGAACAGCCAGCCCGTGGTTAAGAAAATAAAGCCAG atgggtcacctctaaggggctggtgattattcctatttcaaaccttacagGTATTTGGCTCGGGTAGGAGACCTAGAAGCCACCAACACGGAAGACCCAAATCTGAATTATGGGCTTGTCGTGGATTGTGGTAGCAGCGGGTCCCGGATTTTTGTTTATTTCTGGCCAAGGCATAATGCGAACCCCCATGACTTGCTGGACATCAAACAGATGAGAGATCAGAACAGCCAGCCAGTGGTTAAGAAAATCAAGCCAGgtgagtgtgaaacggtcgtgtattgggattgggtcagccagctagcagtt #### Entpd7_ID8798_7 --> 2 - 0 Original Alignment agTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagagTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga Alignment from CESAR agTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagagTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga Alignment from Spaln_aa2Genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga Alignment from Spaln_nt2Genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga Alignment from Pairagon AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga Alignment from Exonerate_protein2genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga Alignment from Exonerate_coding2genome AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga Alignment from GeneWise AGTCAGACTCGGACACCTCTGTGGACTCAGCAGCAGGCCGCAGGAGGACAGTGGGAATCCTGGACATGGGAGGAGCCTCTCTCCAAATTGCCTACGAAGTTCCTACCTCAGCCTCCGACCTTCCTCCCAAACAG ggatccttgaatctgaaccctggtcctagtgcttctgtcttggccctcagAGTCAGACTCAGACACCTCTGTAGACTCAGCAGCAGGCTGTAGGAGAATAGTGGGAATCCTGGACATGGGGGGAGCCTCTCTTCAAATTGCCTACAAAGTACCTACCTCAGCCTCCGATCTTCCTCCCAAACAGgtgagatactgtacataggtgtgcattggcattgctggggcttctgtaga #### Entpd7_ID8800_9 --> 1 - 0 Original Alignment aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagaCTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc Alignment from CESAR aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagaCTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc Alignment from Spaln_aa2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagACTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc Alignment from Spaln_nt2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagACTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc Alignment from Pairagon ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagACTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc Alignment from Exonerate_protein2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagACTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc Alignment from Exonerate_coding2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagACTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc Alignment from GeneWise ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG gctctcagacagttgatggtttctatctacaagcattttattttttaaagACTGCTTGGCCAAAAGACAGGCCTGAGCCCCGACAATCTCTTTCTTGACCCCTGCCTTCCTGTGGGACTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGCTGCCGGACATTGTTGAGCCCTCTGCTGGCCTGTCCCAATACTAGTCAGGCTCCATTGAACGGGATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGATGTACTGCGCATTGGTGGCCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtatggtagtaagagttaacatcttgtgttgttgtcctgtcaatggatgc #### Erlin1_ID8897_7 --> 0 - 2 Original Alignment GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAatgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata Alignment from CESAR GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAatgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata Alignment from Spaln_aa2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata Alignment from Spaln_nt2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata Alignment from Pairagon GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata Alignment from Exonerate_protein2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata Alignment from Exonerate_coding2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata Alignment from GeneWise GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT ttgtttagttacattttggctttcgaatcttctccatcttgcctccctagGCCGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtgagaaacactcattgcttttggcctttctacttaaacaagaatatata #### Erlin1_ID8900_4 --> 1 - 1 Original Alignment tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg taagattacaaaaggttttgtattatctctccccaacctccaaccaccagtGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTggtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca Alignment from CESAR tGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAg taagattacaaaaggttttgtattatctctccccaacctccaaccaccagtGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTggtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca Alignment from Spaln_aa2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG taagattacaaaaggttttgtattatctctccccaacctccaaccaccagTGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTGgtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca Alignment from Spaln_nt2Genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG taagattacaaaaggttttgtattatctctccccaacctccaaccaccagTGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTGgtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca Alignment from Pairagon TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG taagattacaaaaggttttgtattatctctccccaacctccaaccaccagTGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTGgtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca Alignment from Exonerate_protein2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG taagattacaaaaggttttgtattatctctccccaacctccaaccaccagTGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTGgtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca Alignment from Exonerate_coding2genome TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG taagattacaaaaggttttgtattatctctccccaacctccaaccaccagTGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTGgtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca Alignment from GeneWise TGGTGGAGTCATGATCTATATTGACCGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAG taagattacaaaaggttttgtattatctctccccaacctccaaccaccagTGGTGGAGTCATGATCTATATTGACCCAATACAAGTGGTCAATATGTTGGCCCCTTATGCTGgtggtctgcaactatattcctgatggatgaccactgcttgagagtaaaca #### Erlin1_ID8901_3 --> 0 - 2 Original Alignment ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag agacaaaaaccctacatagaaataaatcatctgtttccttaccctagcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc Alignment from CESAR ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAag agacaaaaaccctacatagaaataaatcatctgtttccttaccctagcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAaggtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc Alignment from Spaln_aa2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccctacatagaaataaatcatctgtttccttaccctagcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc Alignment from Spaln_nt2Genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccctacatagaaataaatcatctgtttccttaccctagcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc Alignment from Pairagon ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccctacatagaaataaatcatctgtttccttaccctagcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc Alignment from Exonerate_protein2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccctacatagaaataaatcatctgtttccttaccctagcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc Alignment from Exonerate_coding2genome ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccctacatagaaataaatcatctgtttccttaccctagcagACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc Alignment from GeneWise ---ACAACACTACAAACGGATGAAGTTAAAAATGTGCCTTGTGGAACAAG agacaaaaaccctacatagaaataaatcatctgtttccttaccctagCAGACCACACTACAGACAGATGAAGTTAAAAATGTGCCTTGTGGAACAAGgtaaggcccctttctcctcggttcattcatagtgctactgcaacagtacc #### Ermp1_ID6326_4 --> 0 - 1 Original Alignment GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAg cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAggtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa Alignment from CESAR GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAg cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAggtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa Alignment from Spaln_aa2Genome GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAG cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAGgtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa Alignment from Spaln_nt2Genome GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAG cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAGgtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa Alignment from Pairagon GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAG cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAGgtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa Alignment from Exonerate_protein2genome GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAG cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAGgtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa Alignment from Exonerate_coding2genome GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAG cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAGgtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa Alignment from GeneWise GCAAGCCATGGTTTTATTACTCAACATCCCTGGGCCAGTTTGATTCGAGCATTTATTAACCTGGAGGCTGCTGGTGTCGGAGGGAAAGAACTTGTGTTCCAAACAG cagacctgttgcccatttgagaaatcacagatctgtccctcttccctcagGCAAGCCATGGCTTTATTACACAACATCCCTGGGCAAGTCTGAACCGGGAATTTATTAACCTGGAAGCTGCAGGTGTTGGTGGGAAGGAACTTGTGTTCCAGACAGgtaattgtgtaccaccgtgcaaaattcttagggctattatgacgatgtaa #### Exoc6_ID7367_6 --> 1 - 0 Original Alignment gTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcaggTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt Alignment from CESAR gTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcaggTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt Alignment from Spaln_aa2Genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt Alignment from Spaln_nt2Genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt Alignment from Pairagon GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt Alignment from Exonerate_protein2genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt Alignment from Exonerate_coding2genome GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt Alignment from GeneWise GTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAG tcattgactggccaatgcatattgtttactactcatcctcgcccactcagGTATTACTCTGCACTTAAAACAATGGAACAGCTAGAAAATGTGTACTTTCCCCGAGTCAGCCAGTATCGCTTCTGCCAGCTCATGATGGAGACACTTCCAAAACTACGGGAAGACATCAAAGACATTTCCATGTCTGATCTCAAGGACTTTCTAGAAAGTATTCGAAAGTATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGgtttgtatgacagtccttacccagtgcatctgcttggtagcagctgcatt #### Exoc6_ID7370_9 --> 0 - 0 Original Alignment GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc Alignment from CESAR GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc Alignment from Spaln_aa2Genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc Alignment from Spaln_nt2Genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc Alignment from Pairagon GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc Alignment from Exonerate_protein2genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc Alignment from Exonerate_coding2genome GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc Alignment from GeneWise GGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTG agggaagcaggtgggaccatcaccatgctttgtaaacttgattgctccagGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAGAGGAAGAAGCAGGCACGCCTAGTACTACAACCACATTCAAGTGTAgtaactgttgcttgaaaccaatgagaacaaagactcaacataacaaagcc #### Exoc6_ID7378_15 --> 0 - 2 Original Alignment CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAaggtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct Alignment from CESAR CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAag atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAaggtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct Alignment from Spaln_aa2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct Alignment from Spaln_nt2Genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct Alignment from Pairagon CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct Alignment from Exonerate_protein2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct Alignment from Exonerate_coding2genome CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct Alignment from GeneWise CAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAG atactatgaaaccacttagtttaatcttctctaaatccatcccttcccagCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCCGTGCCTCTTATTTACATTCAAGTTAAAGAATTTATATATGTCAGTCTTAAGTTTTCAGAGTCACTACGCCGAAGgtaagtcagttcacattatgcgtgtctttaaggaagtcaatactttctct #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta atgcagcagtatgtaagcccctacattacctgtacttttccccactacagtGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT atgcagcagtatgtaagcccctacattacctgtacttttccccactacagTGTCTTCCCCACAATGCCTCACCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCAAGTATGGCATAAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtgagtatgaacgcttagctgacagtagtgaagtgagcatatgacaagtg #### Fads2_ID2676_8 --> 0 - 2 Original Alignment GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCag tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCcagtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat Alignment from CESAR GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCag tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCcagtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat Alignment from Spaln_aa2Genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCCAgtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat Alignment from Spaln_nt2Genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCCAgtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat Alignment from Pairagon GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCCAgtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat Alignment from Exonerate_protein2genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCCAgtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat Alignment from Exonerate_coding2genome GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCCAgtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat Alignment from GeneWise GACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGGTTTTCCTCAACTTTATCAG tgtgtcaagtagggttgggcaggacaagaatctttttttctctttcccagGACTTGGCTTGGGCTATTAGCTACTATATGCGTTTCTTCTACACCTACATACCCTTCTATGGTATCCTGGGTGCTTTGGTTTTCCTTAATTTCATCCAgtaagtcaataggattacaatgttgcccttgaaccaatcaggggagtaat #### Fads2_ID2679_5 --> 0 - 0 Original Alignment GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg Alignment from CESAR GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg Alignment from Spaln_aa2Genome GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg Alignment from Spaln_nt2Genome GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg Alignment from Pairagon GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg Alignment from Exonerate_protein2genome GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg Alignment from Exonerate_coding2genome GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg Alignment from GeneWise GGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCAACACCATGCCAAGCCCAACATCTTCCACAAGGACCCGGACATAAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAG tcatgtatcataggtccatctggcttgtatctgtctttttttttttttagGGTGCTGCAGCAAACTGGTGGAACCACCGACATTTCCAGCACCATGCTAAGCCCAACATCTTCCACAAGGACCCAGAAATAAAAAGCTTACATGTGTTTGTCCTAGGGGAGTGGCAGCCACTTGATgtgagctttatttgcaggggtgtcaggggaggtgtaaaggtggtctgtgg #### Fads2_ID2682_2 --> 0 - 0 Original Alignment GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat Alignment from CESAR GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat Alignment from Spaln_aa2Genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat Alignment from Spaln_nt2Genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat Alignment from Pairagon GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat Alignment from Exonerate_protein2genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat Alignment from Exonerate_coding2genome GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat Alignment from GeneWise GATGCCTTCCGTGCCTTCCATCTGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGC caccaggtgaactgtgggtcacccttgcgcatcctcttccttccttctagGATGCATTCCGTGCCTTCCATCTGGACCTTGACTTTGTGGGCAAGTTTTTGAAGCCCCTGTTAGTTGGTGAGCTTGCTCCAGAAGAGCCCAGTCTAGACCATGGTGAAAGTgtgcggccaaatctcatagaataggaattatggtaaacattctttcaaat #### Fam178a_ID9221_4 --> 0 - 1 Original Alignment GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAg tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTggtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata Alignment from CESAR GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAg tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTggtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata Alignment from Spaln_aa2Genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTGgtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata Alignment from Spaln_nt2Genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTGgtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata Alignment from Pairagon GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTGgtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata Alignment from Exonerate_protein2genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTGgtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata Alignment from Exonerate_coding2genome GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTGgtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata Alignment from GeneWise GAAAATGGACATCTCTCAAGAAAAAGATCATCTTCAGACTCGTGGGAACTTTCAG tataaatgctgtggttttctctttcctattttttttttaattccatgcagGAAAATGGACATCTCTCAAGAAAGAGATCATCTTCTGACTCATGGGTACTTTCTGgtgactagtatctcagaataaaacatatggaatctctatgtgagtgcata #### Fam178a_ID9225_6 --> 0 - 2 Original Alignment GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGag acagtgggtttatgagacaccccttaaacccatttaaaactcccctttagGAGTATACTCAAAGTGGAACATCCATAAATTCATTAGAGCAAATCATAAAGAAAATGAAAGACACACAGaggtgagctaaatcatactgtttcatataccactgacttgtccctatctttt Alignment from CESAR GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGag acagtgggtttatgagacaccccttaaacccatttaaaactcccctttagGAGTATACTCAAAGTGGAACATCCATAAATTCATTAGAGCAAATCATAAAGAAAATGAAAGACACACAGaggtgagctaaatcatactgtttcatataccactgacttgtccctatctttt Alignment from Spaln_aa2Genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acagtgggtttatgagacaccccttaaacccatttaaaactcccctttagGAGTATACTCAAAGTGGAACATCCATAAATTCATTAGAGCAAATCATAAAGAAAATGAAAGACACACAGAGgtgagctaaatcatactgtttcatataccactgacttgtccctatctttt Alignment from Spaln_nt2Genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acagtgggtttatgagacaccccttaaacccatttaaaactcccctttagGAGTATACTCAAAGTGGAACATCCATAAATTCATTAGAGCAAATCATAAAGAAAATGAAAGACACACAGAGgtgagctaaatcatactgtttcatataccactgacttgtccctatctttt Alignment from Pairagon GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acagtgggtttatgagacaccccttaaacccatttaaaactcccctttagGAGTATACTCAAAGTGGAACATCCATAAATTCATTAGAGCAAATCATAAAGAAAATGAAAGACACACAGAGgtgagctaaatcatactgtttcatataccactgacttgtccctatctttt Alignment from Exonerate_protein2genome GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acagtgggtttatgagacaccccttaaacccatttaaaactcccctttagGAGTATACTCAAAGTGGAACATCCATAAATTCATTAGAGCAAATCATAAAGAAAATGAAAGACACACAGAGgtgagctaaatcatactgtttcatataccactgacttgtccctatctttt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAATATGCTCAGAGCGGAACTTACACAAATACCTTAGAGCGACTAGTAAAGGAGATGGAAGACACGCAGAG acagtgggtttatgagacaccccttaaacccatttaaaactcccctttagGAGTATACTCAAAGTGGAACATCCATAAATTCATTAGAGCAAATCATAAAGAAAATGAAAGACACACAGAGgtgagctaaatcatactgtttcatataccactgacttgtccctatctttt #### Fam178a_ID9227_8 --> 1 - 2 Original Alignment gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttaggtgcctcccagcctttagacactcctctgtctccctcttccaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCaagtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg Alignment from CESAR gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttaggtgcctcccagcctttagacactcctctgtctccctcttccaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCaagtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg Alignment from Spaln_aa2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttaggtgcctcccagcctttagacactcctctgtctccctcttccagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCAAgtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg Alignment from Spaln_nt2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttaggtgcctcccagcctttagacactcctctgtctccctcttccagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCAAgtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg Alignment from Pairagon GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttaggtgcctcccagcctttagacactcctctgtctccctcttccagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCAAgtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg Alignment from Exonerate_protein2genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttaggtgcctcccagcctttagacactcctctgtctccctcttccagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCAAgtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg Alignment from Exonerate_coding2genome GAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttaggtgcctcccagcctttagacactcctctgtctccctcttccaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCAAgtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg Alignment from GeneWise GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttaggtgcctcccagcctttagacactcctctgtctccctcttccagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTTATTCTCAAgtgggtagatcactgcaggtgttggagtatctttccccatttgtcctatg #### Fam178a_ID9235_16 --> 0 - 0 Original Alignment ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt Alignment from CESAR ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt Alignment from Spaln_aa2Genome ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt Alignment from Spaln_nt2Genome ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt Alignment from Pairagon ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt Alignment from Exonerate_protein2genome ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt Alignment from Exonerate_coding2genome ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt Alignment from GeneWise ATCTCGGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCTGATTTGTTGAAGAAAATGGTCTTGAAGAAAAGGGCCGAACAGCCAAATGAAACTATTGATGACAGTCTTCATTTAGAACTTGAAAAGCAG ggaaccatactgcttagaccaaagcactcatgctttcctccctatcacagATCTCAGTCCTGCATCGATATCTTGTGCAGATGAAGCCTTCCGACCTGTTGAAGAAAATGGTCTTAAAAAAAAGGGCCGAACAGCCAAATGAGACTATTGACGACAGTCTTCATTTGGAACTTGAAAAGCAGgtatgtagattgtgtgcttaaagaattgatggctaaggcaattcgggctt #### Fam189a2_ID5247_10 --> 2 - 0 Original Alignment ctACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagcaACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct Alignment from CESAR ctACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagcaACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct Alignment from Spaln_aa2Genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagCAACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct Alignment from Spaln_nt2Genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagCAACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct Alignment from Pairagon CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagCAACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct Alignment from Exonerate_protein2genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagCAACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct Alignment from Exonerate_coding2genome CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagCAACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct Alignment from GeneWise CTACCCCGGTGCTCAGCTGCGAAGCTGCAACGCAGACAGAAAGGAGGCTAGATCTCGCTACAGTGACTCTGAGGAGAGGCGCGAGGCCACGGGCATCAAGATGCAGACCCCGCTCTCTGATAGATTACAGGTCATACATAGACACGAAGCTGCTAGTGGCCAGGTTCCTGGAGCAGTCCTCCTGCAGCATGACTCCGGACATTCATGAACTTGTAGAGAACATAAAGTCTGTTCTGAAATCCGATGAGGGGCACATGGAAGAAGCCATCACGAGTGCCAGTTTCCTAGAGCAG attaatgtagttggactagtttgttggttgagcatgcttctgttcccaagCAACCCCAGTGCTAAGCTGTGAAGCTGCAACTAAGACAGAAAGGAGATTAGATCTTGCTACAGTGACTCTAAGGAGGGGTTCAAGGCCACGGGCATCAAGATGCAGGCCTCGCTCACTCGTTGATTACAGGTCATACATTGACACAAAGCTACTGGTGGCTGGTTTCCTTCAGCAGTCTTCCTGCAGCATGACTCCAGACATTCATGAACTGGTGGAGAACATAAAGTCTGTACTGAAATCTTATGAGGGACACATGGAAGGAGCCATAACAAGTGCCAGTTTCCTGGAACAAgtgagtcaccacctaaaccctagacttgtatccagtatgtatccagtgct #### Fam189a2_ID5255_5 --> 0 - 0 Original Alignment AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc Alignment from CESAR AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc Alignment from Spaln_aa2Genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc Alignment from Spaln_nt2Genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc Alignment from Pairagon AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc Alignment from Exonerate_protein2genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc Alignment from Exonerate_coding2genome AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc Alignment from GeneWise AAAGTCCTGTTTGCCCTGTGTGCCTTGAACGCCTTGACCACCACAGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAGATCTTTGCCAGCAGAAGGCCATGTATT ctacaagtttatttaaccattggttagagccttgactttcttttctctagAAAGTCCTGTTTGCCCTGTGTGCCTTGAATGCCTTGACTACCACGGTGTGTTTGGTGGCTGCTGCCCTGCGCTACCTCCAAATCTTTGCCAGCAGAAGGCCATGTATTgtaacattctgaaaatgttgtgtgatccatctactacccaatctctaatc #### Fam45a_ID13334_2 --> 2 - 0 Original Alignment aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagaaAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca Alignment from CESAR aaAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagaaAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca Alignment from Spaln_aa2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagAAAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca Alignment from Spaln_nt2Genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagAAAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca Alignment from Pairagon AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagAAAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca Alignment from Exonerate_protein2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagAAAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca Alignment from Exonerate_coding2genome AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagAAAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca Alignment from GeneWise AAAAGGACTCTAATGGAGAAGCCCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCTCACTAAGGAATCTGCTGCTCCGAAAATGCTGCCTAACTGATGAAAACAAACTTCTCCACCCTTTCGTCTTTGGTCAGTACAGAAGAACATGGTTTTATGTCACGACAGTTGAAGTTCCAGATTCTTCAGTTTTGAAAAAG ttggctgggtaatctgagtaatcatggttccccctcacctttctttctagAAAATGACTCTAATGAAGAGGCCCTCTGGGTGTGGTGTTATCCTTCCACATCAGCTTCACTAAGGAACCTGCTGCTCCGCGAATGTTGCCTAACCGATGAAAACAAACTTCTCCACCCTTTTGTCTTTGGTCAGTACCGGAGAACCTGGTTTTATGTTACAACAGTTGAAGTCCCAGATTCTTCAGTTTTGAAAAAGgtgagattagtcaagacaaaaagaaaagacaaaatgaaacacacaaggca #### Fam45a_ID13338_6 --> 1 - 1 Original Alignment gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagaACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAggtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc Alignment from CESAR gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagaACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAggtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc Alignment from Spaln_aa2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagAACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc Alignment from Spaln_nt2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagAACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc Alignment from Pairagon GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagAACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc Alignment from Exonerate_protein2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagAACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc Alignment from Exonerate_coding2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagAACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc Alignment from GeneWise GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG tatgaagcctaaataaaatagataacagttgttttttttttctcctgcagAACACTACCTGCCCTAGTGTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAGgtaggtggaaatatcccaggggagaaatattctgcatacatagattgatc #### Fas_ID6923_4 --> 2 - 2 Original Alignment gtTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCtc aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcaggtCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCAtcgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt Alignment from CESAR gtTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCtc aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcaggtCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCAtcgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt Alignment from Spaln_aa2Genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcagGTCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt Alignment from Spaln_nt2Genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcagGTCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt Alignment from Pairagon GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcagGTCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt Alignment from Exonerate_protein2genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcagGTCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt Alignment from Exonerate_coding2genome GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcagGTCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt Alignment from GeneWise GTTTAGAGGTGGAAACAAACTGCACCCTGACCCAGAATACCAAGTGCAAGTGCAAACCAGACTTCTACTGCGATTCTCCTGGCTGTGAACACTGTGTTCGCTGCGCCTC aattgtcacacctactaccacaataaactcgtgcttccctggtgtttcagGTCTGGAGGTGGAAACAAACTGCACCTTGACCCAGAATACTAAGTGTAAATGCAAACCAGACTTCTACTGTGATTCCCCTGGCTGTGAACACTGTGTTCGCTGTGCATCgtaaggaattaacagttagtgtgtgactcccctgtggctgtgaacactgt #### Fas_ID6924_5 --> 1 - 1 Original Alignment gTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAa gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacaggTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAagttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta Alignment from CESAR gTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAa gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacaggTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAagttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta Alignment from Spaln_aa2Genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacagGTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAAgttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta Alignment from Spaln_nt2Genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacagGTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAAgttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta Alignment from Pairagon GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacagGTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAAgttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta Alignment from Exonerate_protein2genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacagGTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAAgttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta Alignment from Exonerate_coding2genome GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacagGTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAAgttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta Alignment from GeneWise GTGTGAACATGGAACCCTTGAGCCGTGCACAGCAACCAGCAATACAAACTGCAGGAAACAAA gaaaagaggacaaggccgaagaaatctatgatgtgtttctctccccacagGTGTGAGCATGGAACCCTCGAGCCATACACAGCAACCAGCAATACAAACTGTAGGAAGCAAAgttagtatttcttgttttcttcctcacctgcaaagatatagagattgtta #### Fbxl15_ID9851_3 --> 0 - 2 Original Alignment GTG---GGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGG---GTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCag gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctagGTAGTAGGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGAA---CTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCaggtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg Alignment from CESAR ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGG---GTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCag gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctagGTAGTAGGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGAA---CTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCaggtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg Alignment from Spaln_aa2Genome GTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGG---GTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctaggtagtagGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGAA---CTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg Alignment from Spaln_nt2Genome GTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGGGT---GGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctaggtagtagGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGA---ACTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg Alignment from Pairagon GTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACT---GGGTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctaggtagtagGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGA---ACTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg Alignment from Exonerate_protein2genome ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGG---GTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctagGTAGTAGGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGAA---CTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg Alignment from Exonerate_coding2genome ---GTGGGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGG---GTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctagGTAGTAGGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGAA---CTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg Alignment from GeneWise --GGTCCACAGATTCCACGGGCGGCACTAGCCCGGCTACTGCGGGATGCTGAGGGGCTGCAGGAGCTGGCGCTGGCTCCGTGTCACGAATGGCTGTCGGACGAGGACCTGGTGCCGGTGCTGGCACGGAATCCACAGCTCCGGAGCGTAGCGCTGGCCGGCTGCGGCCAACTGAGTCGCCGAGCCCTGGGGGCGCTGGCTGAGGGCTGCCCGCGTCTGCAGCGCCTTTCCCTCGCTCACTGTGACTGG---GTGGACGGGCTGGCACTGCGTGGCCTCGCTGACCGCTGCCCGGCTCTGGAGGAGCTAGACCTCACCGCCTGTCGTCAACTCAAGGACGAGGCCATCGTGTACCTGGCGCAGAGACGCGGCGCGGGCCTCCGCAGCCTCTCATTAGCAGTCAACGCCAATGTTGGGGACACTGCGGTTCAAGAGTTGGCTCGAAACTGCCCGCAGCTCGAGCACCTAGACCTCACCGGCTGCCTTCGGGTCGGAAGCGACGGTGTCAG gaaattatgtgatactggtaaaagcccattttgtgtttggatttttctaggtagTAGGCCCACAGATCCCACGAGCAACACTGGCCCGGCTACTCCGGGATGTTGAA---CTTCAGAAGTTGGCACTGGCTCCATGTCATAAATGGCTGTCAGATGAAGACCTTGTGCCAGTGCTTGCAAGGAATCCGCAGCTCCAGAGTGTAGCACTAGCTGGCTGTGGCCAACTGAGTCGCCGGGACCTTGGAGCTCTGGCTGAGAGTCGCCCACCCCTACAGTGCCTTTCACATGCCCACTGTGACTGGGGGGTGGATGGGCTAGCTCTCCGCGGCCTTGCTGAACGTTGCCCAGCCTCAGAAGAGCTAGATCTTACTACTTGTTGTCAAATCAAGGATGAGGCAATTGTGTACCTCGCTCAGAGACGTGGTGCAGGCCTACATGGCCTTTCATTAGCAGTCAATGCCAATGTTGGGGACTCCGCAGCTCAAGAGTTGACTCGAAACTGCCCACAGCTCCAGCACCTTGACCTCACTGGCTGCCTTCGTATTGGAAGTGATGGTATCAGgtgagcgaaaaatgggcctgtggtactatcaggagagggtagtcattgcg #### Fosl1_ID1000_3 --> 0 - 0 Original Alignment ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac Alignment from CESAR ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac Alignment from Spaln_aa2Genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac Alignment from Spaln_nt2Genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac Alignment from Pairagon ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac Alignment from Exonerate_protein2genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac Alignment from Exonerate_coding2genome ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac Alignment from GeneWise ATCAGCCCAGAGGAGGAAGAGCGCCGCAGGGTGAGACGCGAGCGGAACAAGCTAGCAGCTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCCTGCAGGCG aactaaataaggaccaacctcattgtgacttgtcttatgcatcccactagGTTAGTCCAGAGGAGGAAGAGCGTCGCAGGGTGAGACGTGAGCAGAACAAGCTAGCGGGTGCTAAGTGCAGAAACCGAAGAAAGGAGCTGACAGACTTCTTGCAGGCAgtaactatatagatttagagtgcacagcagcagttctacttacatacaac #### Fra10ac1_ID7559_10 --> 1 - 1 Original Alignment gAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAg tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaaggAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCTACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAggtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca Alignment from CESAR gAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAg tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaaggAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCTACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAggtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca Alignment from Spaln_aa2Genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaagGAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCTACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAGgtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca Alignment from Spaln_nt2Genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaagGAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCTACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAGgtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca Alignment from Pairagon GAGAAAAGAAATCAAGTCAACAAAGAA------AAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaagGAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCT------ACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAGgtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca Alignment from Exonerate_protein2genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaagGAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCTACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAGgtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca Alignment from Exonerate_coding2genome GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaagGAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCTACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAGgtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca Alignment from GeneWise GAGAAAAGAAATCAAGTCAACAAAGAAAAAGTCTAAAACCACGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG tacttgatgaaaatctgttaacaccatctttaatttttacctttttgaagGAGAAAAGAGATCAAATCAGCAAAGAAGACATCAAAGTCTACACCTGAATGTGATGAAGTACCTTGTAAGAAATCACAATCACCACCATCAGAGGAAGCTTCCAAGGGCAAGGACGAAGgtaagtaaggttgaggacttaagagtggaaacagaaaagcaatacagcca #### Fxn_ID5298_3 --> 1 - 0 Original Alignment cTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagcTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca Alignment from CESAR cTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagcTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca Alignment from Spaln_aa2Genome CTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagCTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca Alignment from Spaln_nt2Genome CTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagCTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca Alignment from Pairagon CTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagCTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca Alignment from Exonerate_protein2genome CTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagCTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca Alignment from Exonerate_coding2genome CTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagCTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca Alignment from GeneWise CTCTCTAGACGAGACAGCGTATGAAAGACTGGCGGAAGAGACCCTGGACTCCCTGGCCGAGTTCTTTGAAGACCTCGCAGACAAGCCCTATACCCTGGAGGACTACGATGTCTCTTTTGGG gggaacatctccgtagaccaacagacacccctgaccccaccttactgcagCTCTCTTGATGAGACAGCCTATGAAAGGCAGGCAGAAGAGACCCCAGACTCCCTAGCCGAGTTCTTTGAAGACCTCGCGGACAAGCCCTATACCCTGGAGGACTATGATGTCTCTTTTGGAgtaagtcttggatcagttgcactctaagctatgcttaataaagttatcca #### Ganab_ID2465_4 --> 0 - 2 Original Alignment GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTag cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCcggtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa Alignment from CESAR GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTag cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCcggtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa Alignment from Spaln_aa2Genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCCGgtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa Alignment from Spaln_nt2Genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCCGgtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa Alignment from Pairagon GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCCGgtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa Alignment from Exonerate_protein2genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCCGgtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa Alignment from Exonerate_coding2genome GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCCGgtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa Alignment from GeneWise GTGCTGCTTGTGCTGGAGCTCCAGGGCCTTCAGAAGAACATGACTCGGATCAGGATCGATGAGCTAGAGCCCCGGCGGCCTCGATACCGAGTGCCAGATGTTTTAGTGGCTGACCCCCCCACAGCTAG cctgatgtggattcgaaaatactcctgatcaatgtccgtggtacccatagGTGCTCCTTGTGTTAGAGCTTCAGGGCCTTCAGAAGAACATGACTCGAAGCAGGATTGATGAGCTAGAACCCTGGCGACCTCAGTTCCGAGTGCCGGACCTTTTGGTTGCTGAGCCCCCACCACCCCGgtaagttctccccaaactgcatcagtcatcgtatctctctatttgcccaa #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tgagaaattcggcaggcccgaagagtcgtctaagcttcatctccttttaggtCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tactgaattcggcaggcccgaagagtcgtctaagcttcatctccttttaggtCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTgagtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tgagaaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tgagaaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tgagaaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tgagaaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA tgagaaattcggcaggcccgaagagtcgtctaagcttcatctccttttagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt Alignment from GeneWise -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA TGAGAAATTCGGCAGGCCCGAAGAGTCGTCTAAGCTTCATCTCCTTTTAGGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGCATATGGGATCCCTGAACATGCTGACAGCTTGAGACTGAAGGTTACTGAgtaaggccatgctaaatcgggttaacaaaggtaatgaaaaaccaaacttt #### Ganab_ID2471_10 --> 1 - 0 Original Alignment gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagaGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg Alignment from CESAR gGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagaGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg Alignment from Spaln_aa2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg Alignment from Spaln_nt2Genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg Alignment from Pairagon GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg Alignment from Exonerate_protein2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg Alignment from Exonerate_coding2genome GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg Alignment from GeneWise GGGCGGTGAGCCGTACCGCCTGTACAATTTGGATGTGTTCCAGTATGAGCTGAACAACCCCATGGCTCTATATGGGTCTGTGCCTGTGCTCCTGGCACACAGCTTTCATCGAGACCTGGGCATCTTCTGGCTTAATGCTGCTGAGACTTGGGTTGATATATCCTCCAACACGGCTGGGAAG aattggactcacttgagcattcactgtacatgcctctgtgttcttcccagAGGTGGTGAGCCATACCGCCTGTACAATTTAGATGTATTCCAGTATGAGCTAAACAACCCAATGGCTCTGTATGGGTCTGTACCTGTG---CTGGCACACAGCTTTCATCGAGACCTGGGAATCTTCTGGCTCAATGCAGCTGAGACTTGGGTCGATATATCATCCAACACAACCGGGAAGgtaagccaaaggcatgggagacatgtggtagggctttgccgtgcctcctg #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagggACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagggACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagtattacacttttaccagcctgaaatcatcttctcttgtggcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTAGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGATGTTGAACACGCTGATGGCAAGAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAAAGGCGGAAGgtaaggggatgctgcagctgtgtgggtgcctcttgtccagtgttggggat #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttctttatcttcttcattttctgagcagCACATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtaaggtgttgaaactagggctgtagctttagtcacctagcctggttaat #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gtgtacttggaaggcatgaagtacacttcttgcttgtacttgtggtccagATCCCTGTGTTCCAGCGGGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgtacatccaatcactcagggctggcttaattatagactcattttaaaa #### Gbf1_ID9790_9 --> 2 - 0 Original Alignment gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcaggcGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag Alignment from CESAR gtGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcaggcGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag Alignment from Spaln_aa2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcagGCGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag Alignment from Spaln_nt2Genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcagGCGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag Alignment from Pairagon GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcagGCGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag Alignment from Exonerate_protein2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcagGCGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag Alignment from Exonerate_coding2genome GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcagGCGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag Alignment from GeneWise GTGGTGTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTTCTGATCAGCTTGACCCTCAG tctctgctaataagttctctgcaaataactccccttgtccttgactgcagGCGGTGTGCCCTTCATTGATGCACCAACATCCATTTCCTCTGCAAGTTCAGAGACTGCCTCAACAGTAGTCAGCCCTTGTACAGATAGTGGCCTGGAATTGTCTTCACAGACAACCTCAAAGGAAGACCTCACAGACCTGGAACAGGCTGGTTCCCCAAGGGAGATTACCACTAGTGAGCCTGGCAGTAGTGGTACAGGCAGTTCTGACCAGCTTGACACTCAGgtgctgctgattcatggaaatgcctcttcaaaactacaggtcacttggag #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGtgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGtgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT ctggtatacccccggctctgtcacatagcctgcacactttctcatcccagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCTCTTGATGCCCTTTTGACATTTATTGACAGTACTGAGTTTCACTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAAGAAACACCTAGGCCTGGTTTTGAAGCAGTGGATGGCAACCCAGACGCTAACAAGTgtaagtaatcttatgatgttattattgttattcttttatgtccatactcc #### Gbf1_ID9802_21 --> 1 - 2 Original Alignment gAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCag aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagaAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCaggtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac Alignment from CESAR gAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCag aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagaAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCaggtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac Alignment from Spaln_aa2Genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCAGgtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac Alignment from Spaln_nt2Genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCAGgtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac Alignment from Pairagon GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCAGgtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac Alignment from Exonerate_protein2genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCAGgtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac Alignment from Exonerate_coding2genome GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCAGgtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac Alignment from GeneWise GAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAACTATGTGTGGAGCGTGCTGCTTCACCGAGGTGCTAGCCCTGAGGGCGTGTTCCTTCGAGTGCCTCCTGGCAGCTACGATCTTGACCTCTTCACTATGACCTGGGGCCCCACGATCGCTGCTCTCTCTTATGTCTTCGATAAAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGGCTTCAG aatacattgcaagtggttaagaggtgcctgcccactccttttctttgcagAAATGAGGAGATTGTGATGCCTGTGGAGCAAACTGGTCTGGTTCGTGAAAACTATGTATGGAGCGTGTTGCTCCACCGAGGAGCTAGCCCTGAGGGTGTGTTCCTTCGGGTGCCGTCTGGCAGCTATGATCTTGACATTTTCACTATGACCTGGGGTCCCACAATCACAGCTCTCTCTTATGTTTTTGATAAAAGCCTTGAGGAGTCCATTATTCAGAAAACCATTTCTGGCTTCAGgtttgtgttcatttcctgtctttaccattaatgttgccccccattcctac #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACaggtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACaggtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc #### Gbf1_ID9809_28 --> 1 - 0 Original Alignment gGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagaGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag Alignment from CESAR gGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagaGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag Alignment from Spaln_aa2Genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagAGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag Alignment from Spaln_nt2Genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagAGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag Alignment from Pairagon GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagAGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag Alignment from Exonerate_protein2genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagAGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag Alignment from Exonerate_coding2genome GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagAGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag Alignment from GeneWise GGACCGTGTGGGCTGTGTATGGCAGACTGTTCGAGATCATCTATACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTAGGGCTGCTACGCCTAGCCATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAG ctcagtggcctgataacaagaccctcatcagctctccccctttgttgtagAGATCATGTCGGTTGTGTGTGGCAGAGTGTTCGAGATCATCTATACCACTTGTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGAGCAGTGGTGGGGCTGCTACGCCTAGCCCTTCAGTTACTCCGGAGAGAAGAAATAAGTGGCCAGgtgagaaaattccagtgaagggcagtgatctagtatgcatattgggtaag #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcaggaGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcaggaGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcagGAGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcagGAGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcagGAGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcagGAGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcagGAGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagcttaccaggattccccaaataatctccatgtcccttccacttctcagGAGCACAGTCAGATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGCCTTGACCGAGGGTACACTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCTGGCAAAATACATCGATCAGCCACAGATGCTGACATGGTCAACAGTGGTTGGCTGGTGgtaagtttcctgtcatttcaggtaaacaaatgcgttgtaattcttagaat #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATggtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATggtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATGgtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATGgtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATGgtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATGgtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATGgtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG acatctggtctagaaaatgggcactagctctccttgtcatgcttttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGCTCTTCACCCCTAGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTACTCAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTGCCCACATCACGCCTGATAACTTTGAACTGGGGGTCAAGACCCTCCGTATCTTTGTAGAAGCCAGTCTGAACGATGgtaccttctcttgagaaatcagggagtgggtcatgtgagggatgaagagg #### Gda_ID4894_10 --> 1 - 1 Original Alignment gCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAg actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccaggCTTAGCAGTGGGTTA------------CAGGTTTTGAAGCATAAAGTTAAGATAGGGGTGGGGACAggtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca Alignment from CESAR gCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAg actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccaggCTTAGCAGTGGGTTA------------CAGGTTTTGAAGCATAAAGTTAAGATAGGGGTGGGGACAggtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca Alignment from Spaln_aa2Genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccagGCTTAGCAGTGGG------------TTACAGGTTTTGAAGCATAAAGTTAAGATAGGGGTGGGGACAGgtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca Alignment from Spaln_nt2Genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccagGCTTAGCAGTGGGTTAC------------AGGTTTTGAAGCATAAAGTTAAGATAGGGGTGGGGACAGgtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca Alignment from Pairagon GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccagGCTTAGCAGTGGGTTAC------------AGGTTTTGAAGCATAAAGTTAAGATAGGGGTGGGGACAGgtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca Alignment from Exonerate_protein2genome GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccagGCTTAGCAGTGGG------------TTACAGGTTTTGAAGCATAAAGTTAAGATAGGGGTGGGGACAGgtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca Alignment from Exonerate_coding2genome actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccaggcttagcagtgggttacaggttttgaagcataaagttaagataggggtggggacaggtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca Alignment from GeneWise GCTGAGCAGTGGCTTACTGAACGTGCTTGAGGTCCTGAAGCATAAAGTGAAGATAGGGCTGGGGACAG actgtgcagtcagctggatcttggtgttgtgctgatgtggctgtccccagGCTTAGCAGTGGGTTA------------CAGGTTTTGAAGCATAAAGTTAAGATAGGGGTGGGGACAGgtgaggaccccacgaacataaatgtgaaacagtcccaatatcatgattca #### Gda_ID4896_8 --> 0 - 0 Original Alignment AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg Alignment from CESAR AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg Alignment from Spaln_aa2Genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg Alignment from Spaln_nt2Genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg Alignment from Pairagon AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg Alignment from Exonerate_protein2genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg Alignment from Exonerate_coding2genome AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg Alignment from GeneWise AGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATACCCTAGTTACAAAAACTACACAGATGTCTATGATAAAAACAATCTTCTGACAAACAAG caaacaatatataatccgcataaccaaaaaccttgttctccctgctacagAGCCATATAAGTAAAAACCGTGAAGAAATTGAAGCTGTCAAAAGCCTATATCCGAGTTATAAAAACTACACAGATGTCTATGATAAAAACAATCTCCTAACGAACAAGgtacccccagaattgcaatataccttctgaaataaactacacaaactggg #### Gif_ID3281_5 --> 2 - 0 Original Alignment acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagacACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac Alignment from CESAR acACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagacACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac Alignment from Spaln_aa2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagACACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac Alignment from Spaln_nt2Genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagACACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac Alignment from Pairagon ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagACACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac Alignment from Exonerate_protein2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagACACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac Alignment from Exonerate_coding2genome ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagACACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac Alignment from GeneWise ACACAGGAGCAGTGGCAACCTTGGCCCTGACCTGTATGTACAACAAGATTCCTGTGGGTTCTCAAGAAAACTACAGAGACCTGTTTGGTCAGGCACTGAAGGCTATTGTGGAGAAGATCAGCTTAAGGATCAAAGCTGATGGCATCATCGGAGACATCTACAGCACTGGCCTTGCCATGCAG tgaggactggctgaagtgtaggttgcgatctccacctctgtcctttgtagACACAACAGCAGTGGCAAGCCTGGCCCTGACTTGTATGTACAACAAGATTCCTGTGGGTTCCCAAGAAAACTACAGGGACCAGTTTGGACAAGCATTGAAGGCTATTGTAGAAAAGATCAGTTTAAGTATAAAAGCTGATGGCATCATTGGGGAGATATACAGCACTGGTCTTGCCATGCAGgtgggacatactatgcgctaggacatactaaaaacatcggtccatatgac #### Gldc_ID6395_19 --> 0 - 2 Original Alignment GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAgt tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAgtgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc Alignment from CESAR GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAgt tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAgtgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc Alignment from Spaln_aa2Genome GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAGT tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAGTgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc Alignment from Spaln_nt2Genome GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAGT tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAGTgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc Alignment from Pairagon GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAGT tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAGTgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc Alignment from Exonerate_protein2genome GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAGT tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAGTgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc Alignment from Exonerate_coding2genome GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAGT tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAGTgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc Alignment from GeneWise GTGGGAATCTGCCGCCCTGGGGACTTTGGGTCAGACGTCTCTCACCTAAATCTTCACAAGACCTTCTGCATTCCCCACGGAGGGGGCGGTCCTGGCATGGGGCCCATCGGAGT tcctctttcccagttgaagaatggggttgggtattgtccctggcttgtagGTTGGCATATGCCATCCTGCAGACTTTGGTTCAGACCTCTCTCACCTAAATCTTCATAAGACTTTCTGCATCCCTCATGGAGGGGCTGGTCCTGGGATGGGGCCCATTGGAGTgtgagttgtatggtgctggctttagtattgttgagaatgctagatgcccc #### Gldc_ID6398_17 --> 0 - 0 Original Alignment GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagtgtttttccatttcaccctattttatttgttttgccaattcacacagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac Alignment from CESAR GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagtgtttttccatttcaccctattttatttgttttgccaattcacacagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac Alignment from Spaln_aa2Genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagtgtttttccatttcaccctattttatttgttttgccaattcacacagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac Alignment from Spaln_nt2Genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagtgtttttccatttcaccctattttatttgttttgccaattcacacagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac Alignment from Pairagon GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagtgtttttccatttcaccctattttatttgttttgccaattcacacagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac Alignment from Exonerate_protein2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagtgtttttccatttcaccctattttatttgttttgccaattcacacagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac Alignment from Exonerate_coding2genome GTCTGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagtgtttttccatttcaccctattttatttgttttgccaattcacacagGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac Alignment from GeneWise --------------------------------------------------TGTCTCATTCCTAAGTCAGCACATGGAACGAATCCAGCAAGCGCTCACATGGCGGGCATGAAGATCCAGCCTGTGGAGGTGGACAGATACGGGAACATCGATGTGGCTCACCTCAAGGCCATG cagTGTTTTTCCATTTCACCCTATTTTATTTGTTTTGCCAATTCACACAGGTGTGTCTTATACCAAATTCAGCTCATGGAACAAATTCAGCCAGTGCTCATATGGCAGGCATGAAAATCCAGCCAGTGGAGGTTGACAGGTACGGGAACATTGATGTGGCTCACCTCATGGCCATGgtaggattcattatcatctgagattagagcatactaggctgtcaaaggac #### Gldc_ID6400_15 --> 0 - 2 Original Alignment CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACaggtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt Alignment from CESAR CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACaggtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt Alignment from Spaln_aa2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACAGgtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt Alignment from Spaln_nt2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACAGgtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt Alignment from Pairagon CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACAGgtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt Alignment from Exonerate_protein2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACAGgtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt Alignment from Exonerate_coding2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACAGgtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt Alignment from GeneWise CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG ctgttcttgggaaactcacaagtgcttatgtccctgttttcatcacctagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTGCCACTAGATCAAGCCCATGGGTACCAACAACTTTTCCAAGGGTTGGAAAAAGATCTGTGTGAGATTACAGGTTATGACCAAGTCTCATTCCAGTCAAACAGgtgagtgacaggattgcgtccttttatggttggagtctaaaattgtcctt #### Gldc_ID6403_12 --> 0 - 2 Original Alignment GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATaggtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg Alignment from CESAR GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACag catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATaggtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg Alignment from Spaln_aa2Genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATAGgtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg Alignment from Spaln_nt2Genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATAGgtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg Alignment from Pairagon GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATAGgtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg Alignment from Exonerate_protein2genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATAGgtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg Alignment from Exonerate_coding2genome GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATAGgtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg Alignment from GeneWise GAATTAGTTGCTGAAGGCATGGGAGAGGAGCGGAGAGGTCTTCTAGGGTCTTCATTCAAGAGAACCAGCCCGTTCCTCACTCATCAGGTGTTCAACAG catattcgccattggatctctgcttccagcacctctctcctgggccacagGAATTAGTTTCCAAAGGGATGGGAGAGGAACAAAAAGGTCTTCTAGGCTGTTCATTCAAGCGAACCAGCCCATTCCTGACTCATCAGGTTTTCAATAGgtagtgttcagctaactcagcattttctgttttggtgacaggggtccttg #### Gldc_ID6405_10 --> 2 - 0 Original Alignment ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagggGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt Alignment from CESAR ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagggGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt Alignment from Spaln_aa2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt Alignment from Spaln_nt2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt Alignment from Pairagon GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt Alignment from Exonerate_protein2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt Alignment from Exonerate_coding2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt Alignment from GeneWise GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcactgttgaataaaaaacctgccttctgtccctccagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGCTGCTGTGCAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcagtcaatcatctctgatctgtcgactgt #### Gldc_ID6406_9 --> 0 - 1 Original Alignment GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAggtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc Alignment from CESAR GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAg cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAggtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc Alignment from Spaln_aa2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc Alignment from Spaln_nt2Genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc Alignment from Pairagon GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc Alignment from Exonerate_protein2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc Alignment from Exonerate_coding2genome GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc Alignment from GeneWise GCCCTTTTAGCCAACATGGCTGCCATGTTCGCCATTTACCATGGATCCCAGGGGCTGAAGCACATTGCTAAAAGGGTTCATAATGCTACTTTGATTTTGTCTGAAG cctgacttcaaatacatagttgattctgtgttgcttgctcttctctgtagGCCCTTTTAGCCAATATGGCAGCCATATTTGCAATTTACCATGGATTGCAGGGGCTGAAGCACATTGCAAAAAAGGTTCATAATGCTACTTTGACTTTGTCTGAAGgtgaggtgataatgctaagctcacagtatgatatgatagtaagcttctcc #### Gldc_ID6410_5 --> 1 - 2 Original Alignment aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagaCACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCaagtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct Alignment from CESAR aCACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCaa cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagaCACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCaagtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct Alignment from Spaln_aa2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagACACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCAAgtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct Alignment from Spaln_nt2Genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagACACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCAAgtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct Alignment from Pairagon ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagACACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCAAgtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct Alignment from Exonerate_protein2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagACACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCAAgtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct Alignment from Exonerate_coding2genome ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagACACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCAAgtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct Alignment from GeneWise ACACAACAAGAGGAAGAAATTTTTCGTTGATCCTCGTTGTCACCCACAGACGATAGCTGTTGTCCAGACTCGAGCCAA cagcaggcaaaaaaattgttaaggtctgtacatgtgctctttctttgtagACACAACAAGAGAAAGAAATTTTTTGTTGATCCGTGTTGTCACCCACAAACCATAGCGGTTGTCCGGACTCGAGCCAAgtatgtgcagattgtgttgcaagccatgagtaatattttctgatttgtct #### Gldc_ID6414_3 --> 2 - 2 Original Alignment gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tttgtattgctgacatgccatgaacctgttatctcccctgttttaaataggtGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGAtggtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc Alignment from CESAR gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tttgtattgctgacatgccatgaacctgttatctcccctgttttaaataggtGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGAtggtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc Alignment from Spaln_aa2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgtattgctgacatgccatgaacctgttatctcccctgttttaaatagGTGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGATGgtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc Alignment from Spaln_nt2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgtattgctgacatgccatgaacctgttatctcccctgttttaaatagGTGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGATGgtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc Alignment from Pairagon GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgtattgctgacatgccatgaacctgttatctcccctgttttaaatagGTGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGATGgtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc Alignment from Exonerate_protein2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgtattgctgacatgccatgaacctgttatctcccctgttttaaatagGTGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGATGgtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc Alignment from Exonerate_coding2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgtattgctgacatgccatgaacctgttatctcccctgttttaaatagGTGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGATGgtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc Alignment from GeneWise GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttgtattgctgacatgccatgaacctgttatctcccctgttttaaatagGTGAGAATGATATCCTTGAGACTTCGCATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTACTGGAGAACTCTGGATGgtgagtcatctatcctccacttgtacacatcaatactagggccactgtcc #### Glis3_ID5980_2 --> 0 - 0 Original Alignment GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCAC---CCAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatagGATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac Alignment from CESAR GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCG---GCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatagGATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac Alignment from Spaln_aa2Genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCA---GCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatagGATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac Alignment from Spaln_nt2Genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCT---CCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatagGATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac Alignment from Pairagon GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACC---CAGCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatagGATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac Alignment from Exonerate_protein2genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCA---GCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatagGATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac Alignment from Exonerate_coding2genome GATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCA---GCGGCTCCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatagGATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac Alignment from GeneWise GTATCCATGTCCACGGATTTTATGGCCAGCTGCAGACATTCTGTCCCCCGCATTATCCTGATTCCCAAAGAACTGTGCCACCCAGCGGCT---CCTGCAGTATGGTGCCTTCCTTTGAGGACTGCCTGGTCCCCACGTCCATGGGTCAAGCCGGTTTTGATGTTTTCCACAGAGCCTTCTCAACACACTCAGGCATCACAG ataattagttcggccctcagattttgggcgtggatctcttaattttatag---------------GATTTTATGGCTAGCTGTAGACACTCAGTCCCTCACATTATCCTAATTCCCAAAGAATCGTGCCACCCAGCAGCAGCCCCAGCAGTCTGGTGCCTCCCATTGAGAATTGCGTGGTCCCTGCGTGCCTGGGTCAAGCCAGTTTTAATGTTTTCCACTGAGCCTTCTCAGCATACTCAAGCCTCAGAGgtaagagccaatgtggtcaataactggctacacaggaacgaatttttgac #### Glyat_ID3431_4 --> 2 - 2 Original Alignment gtTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCat cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcaggtTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCatgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga Alignment from CESAR gtTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCat cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcaggtTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCatgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga Alignment from Spaln_aa2Genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga Alignment from Spaln_nt2Genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga Alignment from Pairagon GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga Alignment from Exonerate_protein2genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga Alignment from Exonerate_coding2genome GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga Alignment from GeneWise GTTCCCAGTCCCACCTGAATAAGACGATACAAAATCTTGCAAGCATCCAATCTTTTCAAATCAAACATTCAGAAAACATCCTCTATGTATCATCAGAGACAATCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCGACAGGAAGTGGCAAGCCCAAGGCCAT cacaatgtgtttccacatggctgcatgttgctcacacaaatgtgtttcagGTTCCCAGTCCTACCTGAATAAAACGATACAAAATCTTGCAAGCATCCAATCTTTCCAAATCAAACATTCAGAAAATATCCTCTATGTATCATCAGAGACAGTCAAGAAACTGTTCCCTTCCCTGCTGGATACAAAGAATTTATCAACAGGAAGTGGGAAGCCCAAGGCCATgtgtgcttgacatggtctgctagattcttccatccttctacatcaacaga #### Gm4952_ID3422_3 --> 0 - 1 Original Alignment GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAa cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAagtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga Alignment from CESAR GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAa cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAagtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga Alignment from Spaln_aa2Genome GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAA cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAAgtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga Alignment from Spaln_nt2Genome GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAA cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAAgtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga Alignment from Pairagon GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAA cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAAgtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga Alignment from Exonerate_protein2genome GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAA cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAAgtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga Alignment from Exonerate_coding2genome GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAA cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAAgtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga Alignment from GeneWise GAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAACAGCATCTGCAGATCCAAA cttaatgtgtacagccctcataattgctctcttatgttctttattttcagGAGATGGGAGATGACCTTGATCAGCACACCAACACTTACCAGATATATTCTAAAGATCCTAAGCACTGTTTGGAATTCCTTGGCACACCAGATGTCATCAACTGGAAAGAGCATCTGCAGATCCAAAgtaagggcattcaaatcatgaatactctgtgtgacacaagtgggattgga #### Gm815_ID5779_3 --> 2 - 0 Original Alignment gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccctcacctcctactttgcataaaaatgttttctttcaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc Alignment from CESAR gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccctcacctcctactttgcataaaaatgttttctttcaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc Alignment from Spaln_aa2Genome GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccctcacctcctactttgcataaaaatgttttctttcagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc Alignment from Spaln_nt2Genome GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccctcacctcctactttgcataaaaatgttttctttcagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc Alignment from Pairagon GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccctcacctcctactttgcataaaaatgttttctttcagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc Alignment from Exonerate_protein2genome CACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT ATCCTGATACTCCCTCACCTCCTACTTTGCATAAAAATGTTTTCTTTCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc Alignment from Exonerate_coding2genome CACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT ATCCTGATACTCCCTCACCTCCTACTTTGCATAAAAATGTTTTCTTTCAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc Alignment from GeneWise GCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccctcacctcctactttgcataaaaatgttttctttcaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagagttgtgtgtctgctcgggtccttgctccaaaaccatgggaattc #### Gm8369_ID3206_2 --> 0 - 0 Original Alignment TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc Alignment from CESAR TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc Alignment from Spaln_aa2Genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc Alignment from Spaln_nt2Genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc Alignment from Pairagon TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc Alignment from Exonerate_protein2genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc Alignment from Exonerate_coding2genome TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc Alignment from GeneWise TTCATTGTCTCAGGATCCTTGTCAATTGCAGCAGGAGTGAAAACTACAAAAAGCCTG acatagtggctggttaaagatgtataacgtgtcttttttaaattttaaagGTTATTGTCTCAGGATCCTTCTCAATTGTAGCAGAAGTGAAAAACACAAAAAGATTAgtaagttattcagttgcttgtgttgtcaaaagtcagcaattgtacaagtc #### Gna14_ID4039_2 --> 2 - 0 Original Alignment gaACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacaggcACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag Alignment from CESAR gaACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacaggcACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag Alignment from Spaln_aa2Genome GAACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacagGCACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag Alignment from Spaln_nt2Genome GAACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacagGCACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag Alignment from Pairagon GAACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacagGCACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag Alignment from Exonerate_protein2genome GAACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacagGCACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag Alignment from Exonerate_coding2genome GAACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacagGCACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag Alignment from GeneWise GAACCGGTGAGAGTGGGAAAAGCACCTTTATCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAGGGCTTCACGAAGCTGGTTTACCAAAACATATTCACGGCCATGCAAGCCATGATCAGAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAG tgttgcatctctttggaattagccagcttgatgatggccatgccccacagGCACCAGTGAGAGTGGGAAAAGCACCTTTTTCAAGCAGATGAGGATAATCCATGGGTCTGGCTACAGTGATGAAGATAGAAAAGGCTTCACGAAGCTAGTTTACCAAAACATATTCACAGCCATGCAAGCCATGATAAAAGCAATGGATACCCTGAGGATACAATACATGTGTGAGCAGAATAAGgtagagtatttgcagattgtatggaagcttcccctggatgtgaacctcag #### Gna14_ID4045_4 --> 1 - 2 Original Alignment tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tctgccttcttcaaatagagccttgacagggttctctccatattttacagtTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACcggtaagattgtttccgggatagcatcctttataagacactatgcttgataa Alignment from CESAR tTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCcg tctgccttcttcaaatagagccttgacagggttctctccatattttacagtTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACcggtaagattgtttccgggatagcatcctttataagacactatgcttgataa Alignment from Spaln_aa2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tctgccttcttcaaatagagccttgacagggttctctccatattttacagTTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACCGgtaagattgtttccgggatagcatcctttataagacactatgcttgataa Alignment from Spaln_nt2Genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tctgccttcttcaaatagagccttgacagggttctctccatattttacagTTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACCGgtaagattgtttccgggatagcatcctttataagacactatgcttgataa Alignment from Pairagon TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tctgccttcttcaaatagagccttgacagggttctctccatattttacagTTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACCGgtaagattgtttccgggatagcatcctttataagacactatgcttgataa Alignment from Exonerate_protein2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tctgccttcttcaaatagagccttgacagggttctctccatattttacagTTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACCGgtaagattgtttccgggatagcatcctttataagacactatgcttgataa Alignment from Exonerate_coding2genome TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tctgccttcttcaaatagagccttgacagggttctctccatattttacagTTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACCGgtaagattgtttccgggatagcatcctttataagacactatgcttgataa Alignment from GeneWise TTACCTGACGGACATTGAGCGTATCGCCATGCCCTCTTTCGTGCCAACACAACAGGATGTGCTTCGTGTTAGAGTGCCCACCACTGGCATCATAGAATATCCATTCGACCTGGAAAACATCATCTTCCG tctgccttcttcaaatagagccttgacagggttctctccatattttacagTTACCTAACGGACATTGAGCGTATTGCCATGCCCTCTTTTGTGCCCACACAACAGGATGTTCTTCGTGTTAGAGTACCCACCACTGGCATTATAGAATATCCATCTGACTTGGAAAACATTATCTACCGgtaagattgtttccgggatagcatcctttataagacactatgcttgataa #### Gpam_ID11533_16 --> 0 - 0 Original Alignment CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc Alignment from CESAR CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc Alignment from Spaln_aa2Genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc Alignment from Spaln_nt2Genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc Alignment from Pairagon CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc Alignment from Exonerate_protein2genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc Alignment from Exonerate_coding2genome CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc Alignment from GeneWise CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGGCAGAG cctcaagaaaaatatgaggcccgtcttcaaccctgtttatctgtccacagCCCTGCCAAACCTTTTACAAAGTCTGTCATGAGTCAGTTGGCAAGTTCATCCAGTATGGCATTCTCACAGTGTCTGAGgtgagaaaaatggcctggttggcctggttttgatgtcttcattcaactcc #### Gpam_ID11535_14 --> 0 - 1 Original Alignment GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAg aagagaaatttgggacattacactatctacacatttttatttatttatagGGAATTCACATTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGG---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAggtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga Alignment from CESAR GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAg aagagaaatttgggacattacactatctacacatttttatttatttatagGGAATTCACATTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGG---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAggtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga Alignment from Spaln_aa2Genome GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aagagaaatttgggacattacactatctacacatttttatttatttatagGGAATTCACATTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGG---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAGgtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga Alignment from Spaln_nt2Genome GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aagagaaatttgggacattacactatctacacatttttatttatttatagGGAATTCACATTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGGG---TTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAGgtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga Alignment from Pairagon GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aagagaaatttgggacattacactatctacacatttttatttatttatagGGAATTCACATTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGGG---TTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAGgtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga Alignment from Exonerate_protein2genome GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aagagaaatttgggacattacactatctacacatttttatttatttatagGGAATTCACATTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGG---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAGgtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga Alignment from Exonerate_coding2genome TGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aagagaaatttgggacattacactatctacacatttttatttatttatagggaattcacatttccacacttgTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGG---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAGgtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga Alignment from GeneWise GGAATCCATCTCTCCACGCTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCTCGCGATTTCGACCTAGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGATGAGTTTTTTATTACTCCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATGGCGTACTTCATGTGTTCATCATGGAAGCCATCATAG aagagaaatttgggacattacactatctacacatttttatttatttatagGGAATTCACATTTCCACACTTGTGGAAGACTTCTTTGTGATGAAGGAGGAAGTCCTAGCCCGG---GTTGACCTGGGCTTCTCTGGAAATTCTGAGGATGTTGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTTACAATCACACATACAAGCAGGAAAGACAAGTTTTATATTACT---AGCACAACTGTCCCATCAGTATTTGAACTCAACTTCTATAGTAATGGTGTGCTTCATGTGTTCATCATGGAAGCCATTATAGgtgagcgagtgtggtgattgcatgatgacattagctatttgttctagaga #### Gpam_ID11536_13 --> 2 - 0 Original Alignment ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagcaGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATTGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga Alignment from CESAR ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagcaGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATTGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga Alignment from Spaln_aa2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATTGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga Alignment from Spaln_nt2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATTGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga Alignment from Pairagon CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATTGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga Alignment from Exonerate_protein2genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATTGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga Alignment from Exonerate_coding2genome tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagcagccagcaagtctggggctatcatgtcaactcacattgttgcctgtcttctcctatacaaacacaggcaggtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga Alignment from GeneWise CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tctgtcatcaagcactttcatgcagggcacccactccctccctctctcagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATTGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaccccttacaatcaatcaattagagatatttgatgaatgccatagtga #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatgctttcaagtaagggattatttcactacagtttctgtttccagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCTTTCTCTAGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagtgtgggtacctgtagggcttggcttatcccctaactcatgtcctt #### Gpam_ID11540_9 --> 0 - 0 Original Alignment CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt Alignment from CESAR CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt Alignment from Spaln_aa2Genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt Alignment from Spaln_nt2Genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTT---CCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt Alignment from Pairagon CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGA---TCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt Alignment from Exonerate_protein2genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt Alignment from Exonerate_coding2genome CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt Alignment from GeneWise CATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATC---TTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACAATGGCGAACAGTTG ccttctgagttgttagtcctatctccatgctatcttgcaatttaatacagCATGTAGTTGAACTCCTCCAACAGCAACAATTCCTGGAAATATTGTTCCTAGAAGGGACCCCCTCCCGTAGTGGTAAGACCTCTTGTGCACGGGAAGGCCTCCTCTCAGTGGTAGTGGATACACTGTCATCCAACACCATACCTGACATCCTAGTCATACCTGTGGGCATCTCTTATGATTGTATAATTGAAGGTCACTACAATGGTGAACAGTTGgtgggtaagtgggttgcattaggctgtctgtgcctcttgagctttcatgt #### Gpam_ID11546_3 --> 0 - 2 Original Alignment GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAag tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGcggtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt Alignment from CESAR GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAag tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGcggtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt Alignment from Spaln_aa2Genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGCGgtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt Alignment from Spaln_nt2Genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGCGgtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt Alignment from Pairagon GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGCGgtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt Alignment from Exonerate_protein2genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGCGgtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt Alignment from Exonerate_coding2genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGCGgtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt Alignment from GeneWise GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG tctctcatacttaccagctgtgatggtgcaacttcaatctcactttctagGAAAGATTTTTCAACCCAAGTATTCCATCCCTAGGTTTGCAGAATGTTATTTATATTAATGAAACACAGACGCGgtatcaatgctgatgttaggttgcacattgctggttagtgcacgatcctt #### Grk5_ID13400_3 --> 2 - 0 Original Alignment acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagacAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc Alignment from CESAR acAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagacAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc Alignment from Spaln_aa2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc Alignment from Spaln_nt2Genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc Alignment from Pairagon ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc Alignment from Exonerate_protein2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc Alignment from Exonerate_coding2genome ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc Alignment from GeneWise ACAGAGATTACTACAGTCTATGTGACAAGCAACCAATTGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGAGTGCTACATTCAGTTCCTGGACTTAGTG cctctaactatctagtttggagtgttaagcgtgcttctttttcttttcagACAGAGATTACTATAGTCTATGTGACAAGCAACCAATCGGGAGACTGCTTTTTCGACAGTTCTGTGAAACCAGGCCTGGGCTGGTGTGCTACATTCAGTTCCTGCACCTAGTCgtgagtacctaccacatgatccataaggtccctacaatccaataattttc #### Grk5_ID13420_13 --> 0 - 0 Original Alignment CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga Alignment from CESAR CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga Alignment from Spaln_aa2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGGAAC------TTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga Alignment from Spaln_nt2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGGAAC------TTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga Alignment from Pairagon CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAG------GAACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga Alignment from Exonerate_protein2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga Alignment from Exonerate_coding2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga Alignment from GeneWise CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT tacctttgttgtctcttttgttcatatgcgtggggtggggatcattccagGTGCTTACAGAAGACTCAGAGCAGCGGCTAGGCTGTCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTTGTTCAAGATgtaagaaggtgctcttgttgtaagtcacatgtccaagctgtgttcttgga #### Gucy2g_ID11573_18 --> 0 - 1 Original Alignment GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAggtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta Alignment from CESAR GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAg tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAggtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta Alignment from Spaln_aa2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta Alignment from Spaln_nt2Genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGA---GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta Alignment from Pairagon GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGA---GATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta Alignment from Exonerate_protein2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta Alignment from Exonerate_coding2genome GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta Alignment from GeneWise GTTGAAACCATTGGAGATGCCTACATGGTGGCAAGTGGGCTCCCCATCCGCAACGGAGCTCAGCATGCCGACGAG---ATTGCCACCATGGCCCTGCACTTACTCAGTGTCACCACCCACTTCCAGATCGGGCACATGCCTGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACACAG tctcagaggtgcatgtaaatgataaggagttatctctcccattgccccagGTTGAAACCATTGGAGATGCCCACATGGTGGCCAGTGGGCTCCCTATCCGCAATGGTGCTCAGCATGCTGACACAATGATTGTGACCATGGCATTGCATCTACTCAGTGTCACCACCCACTTCCAGATTGGTCACATGCCAGAGGAGAGGCTCAAGCTCCGCATAGGCCTCCACCCAGgtaaaaagcattgctactgtgggtagttgctacactctaccaatatgtta #### Gucy2g_ID11574_17 --> 1 - 0 Original Alignment cTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagtTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGAC------------ACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa Alignment from CESAR cTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagtTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGAC------------ACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa Alignment from Spaln_aa2Genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGAC------------ACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa Alignment from Spaln_nt2Genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGA------------CACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa Alignment from Pairagon CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGA------------CACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa Alignment from Exonerate_protein2genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGAC------------ACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa Alignment from Exonerate_coding2genome CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGAC------------ACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa Alignment from GeneWise CTTCGTGGGAGAACAGCTAATAGCCGGAAAGTCTGTAGAACCGGAACACTTTGAGTCTGTCACCATCTTCTTCTCTGACATCGTGGGGTTCACAAAGCTGTGTTCCCTCAGCTCCCCCCTGCAAGTGGTGAAGCTCCTCAACGACCTGTACAGCTTGTTTGACCACACGATACAGAGCCATGATGTATACAAG agaccttggtgtatggcatagtctcattccagctgtggccttccccccagTTTTGTGGGAGAACAGCTAATAGCTGGAAAGTGTGTAGAACCAGAGCATTTTGAGTCCATCACCATCTTCTTTTCTGAC------------ACAAGGTTGTGTTCTCTTAGTTCCCCTCTTCAAGTTGTTAAGCTGCTCAATGAGGTGTACAGCTTATTTGACCATACTATCCAGAGCCATGATGTCTACAAAgtaagctgagacacctgtgcagtgatgcacagacccctccactgtcataa #### Gucy2g_ID11586_5 --> 0 - 1 Original Alignment GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGg ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCACT---CAGggtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg Alignment from CESAR GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGg ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCACT---CAGggtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg Alignment from Spaln_aa2Genome GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCACT---CAGGgtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg Alignment from Spaln_nt2Genome GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCAC---TCAGGgtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg Alignment from Pairagon GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCAC---TCAGGgtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg Alignment from Exonerate_protein2genome GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCACT---CAGGgtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg Alignment from Exonerate_coding2genome GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCACT---CAGGgtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg Alignment from GeneWise GTGAGCCCGTACTCTGCCTACCTGCACGATGCTCTCTTACTCTACGCTCAGACTGTGGAGGAAATGAGGAAGGCTGAGAAAGACTTCCGGGATGGGCGGCAGCTGATTAGCACCCTGAGAGCTGGTCAGGTCACACTGCAGG ttaaatttacatcagggcatgcacccctgctttgtaattgcttctttcagGTGAGCCCATATTCAGCTTACCTCCATGATGCACTGTTACTCTATGCTGAAACTGTGGAAGAAATGAGAAAAGCTAAGAAGGACTTCCGGCATGGGCGGCAGCTGATTAGCACTCTGAGAGCTGGGCAGGTCACT---CAGGgtgagtgattttcaagaccaatattctaagataatgaatgtcttttatgg #### Habp2_ID12057_3 --> 2 - 1 Original Alignment atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cctctttgcattattcctctttgatcttggattattttctgtgcctacagatCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTggtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca Alignment from CESAR atCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTg cctctttgcattattcctctttgatcttggattattttctgtgcctacagatCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTggtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca Alignment from Spaln_aa2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttggattattttctgtgcctacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTGgtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca Alignment from Spaln_nt2Genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttggattattttctgtgcctacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTGgtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca Alignment from Pairagon ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttggattattttctgtgcctacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTGgtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca Alignment from Exonerate_protein2genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttggattattttctgtgcctacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTGgtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca Alignment from Exonerate_coding2genome ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG cctctttgcattattcctctttgatcttggattattttctgtgcctacagATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTGgtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca Alignment from GeneWise AGTCATTGGGCTCTCACTGATGTCCTTC---ATTGCGCCCCCAGACCCAGATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG CCTCTTTGCATTATTCCTCTTTGATCTTGGATTATTTTCTGTGCCTACAGATCTATGCCAGTCCAACCCCTGTGAACATGGGGGTGATTGTATCCTCAGAGGGGACACCTTCACTTGTAGCTGTCCCGCCCCGTTCTCAGGAAGCCGATGCAAGACTGgtgagtgtataactaagcatccacaatgccacctgtatggatctgtgcca #### Habp2_ID12058_4 --> 2 - 1 Original Alignment caCAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAg gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagcaCAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAggtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg Alignment from CESAR caCAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAg gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagcaCAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAggtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg Alignment from Spaln_aa2Genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagCACAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg Alignment from Spaln_nt2Genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagCACAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg Alignment from Pairagon CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagCACAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg Alignment from Exonerate_protein2genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagCACAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg Alignment from Exonerate_coding2genome CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagCACAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg Alignment from GeneWise CACAAAACAAGTGCAAGGACAACCCATGTGTCCATGGTGATTGCCTCATTACCCAGAAGCACCCCTACTACCGCTGTGCCTGCAAATACCCTTACACGGGACCAGACTGCTCCAAAG gttttgggtatagaagggcaggctacagtactttaataaaatgttcctagCACAAAATAAGAGCAAGGACAACCCA------CATGGTGATTGTCTCATTACCCAGAAGCACCCCTACTACCGCTGCGCATGCAAATACCCTTACACAGGACCAGACTGCTCCAAAGgtcagttgctagcacttttcttcaacaaaggttttctctacttttgtttg #### Habp2_ID12063_9 --> 1 - 1 Original Alignment cATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTg ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagtATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTggttggtgtcccatcccccctggccctgttcccttttggataagagttttg Alignment from CESAR cATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTg ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagtATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTggttggtgtcccatcccccctggccctgttcccttttggataagagttttg Alignment from Spaln_aa2Genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagTATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTGgttggtgtcccatcccccctggccctgttcccttttggataagagttttg Alignment from Spaln_nt2Genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagTATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTGgttggtgtcccatcccccctggccctgttcccttttggataagagttttg Alignment from Pairagon CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagTATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTGgttggtgtcccatcccccctggccctgttcccttttggataagagttttg Alignment from Exonerate_protein2genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagTATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTGgttggtgtcccatcccccctggccctgttcccttttggataagagttttg Alignment from Exonerate_coding2genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagTATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTGgttggtgtcccatcccccctggccctgttcccttttggataagagttttg Alignment from GeneWise CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG ctgtgctgccatggctcctcaggccctacttgagtttcttttctgtccagTATAAACACCAAACACCTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAACGACATTGgttggtgtcccatcccccctggccctgttcccttttggataagagttttg #### Hectd2_ID7146_4 --> 1 - 0 Original Alignment gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcaggGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa Alignment from CESAR gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcaggGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa Alignment from Spaln_aa2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa Alignment from Spaln_nt2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa Alignment from Pairagon GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa Alignment from Exonerate_protein2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa Alignment from Exonerate_coding2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa Alignment from GeneWise GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG agaaagcggctggtttgcctgtacttggtctgtccctgtttcctttgcagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAACTAAACACTGCATTTAAGgtataaatgcaaaagaaagctacttctccctccctggtttcaaacttaaa #### Hectd2_ID7160_16 --> 0 - 0 Original Alignment GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct Alignment from CESAR GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct Alignment from Spaln_aa2Genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct Alignment from Spaln_nt2Genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct Alignment from Pairagon GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct Alignment from Exonerate_protein2genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct Alignment from Exonerate_coding2genome GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct Alignment from GeneWise GAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGATTTCTATTCAACATTTCAG ggtttcaatgctagtgatttgtgaagataatgtcttgttctgtcttgcagGAATTGGCCCATGGACTAAAGGAACTTTTATCATATGAAGGCAACGTTGAAGAAGACGTCTATTCAACCTATCAGgtaaaaatagaagtgtccacccaaacaatctcaagtcaccatattctgct #### Hectd2_ID7161_17 --> 0 - 1 Original Alignment GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAg ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAggttggttcaacatgcactccctggcttagatagcagatttatacctcccc Alignment from CESAR GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAg ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAggttggttcaacatgcactccctggcttagatagcagatttatacctcccc Alignment from Spaln_aa2Genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgttggttcaacatgcactccctggcttagatagcagatttatacctcccc Alignment from Spaln_nt2Genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgttggttcaacatgcactccctggcttagatagcagatttatacctcccc Alignment from Pairagon GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgttggttcaacatgcactccctggcttagatagcagatttatacctcccc Alignment from Exonerate_protein2genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgttggttcaacatgcactccctggcttagatagcagatttatacctcccc Alignment from Exonerate_coding2genome GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgttggttcaacatgcactccctggcttagatagcagatttatacctcccc Alignment from GeneWise GTTTTTCAAGAAGAATTTGGAGTAATTAAATCCTATAACTTAAAACCAGGGGGTGATAAGATTCCAGTTACCAATCAGAATAGAAGAG ttgttgttgtataggtgatgaacccagatatgaccataactcttttgtagGTTTTTCAAGAAGAATTTGGAATAATTAAGTCCTATAACCTAAAGCCTGGGGGGGATAAGATTCCAGTTACTAACCAAAATAGGAGAGgttggttcaacatgcactccctggcttagatagcagatttatacctcccc #### Hectd2_ID7164_20 --> 1 - 2 Original Alignment aTACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACtg ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagaTACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACtggtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt Alignment from CESAR aTACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACtg ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagaTACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACtggtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt Alignment from Spaln_aa2Genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt Alignment from Spaln_nt2Genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt Alignment from Pairagon ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt Alignment from Exonerate_protein2genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt Alignment from Exonerate_coding2genome ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt Alignment from GeneWise ATACTTTTGGGATGTTGTGCTTGGATTTCCACTTGAACTTCAGAAAAAGCTGTTACACTTTACTACAGGAAGCGACAGAGTACCTGTTGGAGGGATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACTAACTG ttcaaacaacacttcattcgaatgcatctgtgattacctcatccttctagATACTTTTGGGATGTTGTGCTGGGATTTCCACTTGAGCTTCAGAAAAAGCTGTTACACTTCACTACAGGGAGTGACAGAGTACCTGTTGGAGGCATGGCTGATTTGAATTTTAAAATTTCAAAGAATGAAACTTCTACCAACTGgtaagctctgggccaagaacaaagttaatttgattggttaattgctctgt #### Hells_ID7698_5 --> 2 - 0 Original Alignment tcATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagttATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa Alignment from CESAR tcATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagttATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa Alignment from Spaln_aa2Genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa Alignment from Spaln_nt2Genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa Alignment from Pairagon TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa Alignment from Exonerate_protein2genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa Alignment from Exonerate_coding2genome TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa Alignment from GeneWise TCATGAAAAAGAAAAGAGGAAGAGAAGATGAATCTTATAATATTTCAGAGGTCATGTCAAAAGAG atagttagggatctaatttatgctcatatgtgggttttttgttccctcagTTATGAAGAAAAAAAGGGGGAGGGAAGATGAATCTTACAATATCTCAGAGGTCATGTCGAAGGAAgtatgtggtttatataatggattgaagtgctttttgagggactacagcaa #### Hells_ID7699_6 --> 0 - 0 Original Alignment GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat Alignment from CESAR GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat Alignment from Spaln_aa2Genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat Alignment from Spaln_nt2Genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat Alignment from Pairagon GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat Alignment from Exonerate_protein2genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat Alignment from Exonerate_coding2genome GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat Alignment from GeneWise GAAATTTTGTCCGTAGCTAAAAAACATAAGGATAATGAG gtggtagttttatgcgtaggaactactaattttcatgctgtttattttagGAAATCTTGTCTGTGTCTAAAAAACATAAGGATAATGAGgtacatgacatcttgatcctttggttatgctcaagattatggaaacatat #### Hells_ID7700_7 --> 0 - 0 Original Alignment GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg Alignment from CESAR GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg Alignment from Spaln_aa2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg Alignment from Spaln_nt2Genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg Alignment from Pairagon GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg Alignment from Exonerate_protein2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg Alignment from Exonerate_coding2genome GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg Alignment from GeneWise GATGAAAGCTCTTCCACTACGAGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCTCAAACTGTTAGGCAGAATTCTAAATTCTTTTTTGACCCAGTTCGGAAATGTAACGGACAGCCTGTACCCTTTCAACAACCAAAGCATTTCACAGGAGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCTTAGG aaggcctattaggctgtaccttatcgttcaatttcctgtctttgttctagGATGAAAGCTCTTCAACTACAGGTCTTTGTGTAGAAGATATTCAGAAAAATAAGGATTCAAATAGTATGATTAAAGATAGATTGTCCCAAACTGTAAGGCAAAATTCTAAATTTTATTTTGACCCAGTTCGGAAATGTAATGGACAGCCTGTCCCCTTACAACAGCCAAAGCATTTCACAGGGGGAGTAATGAGGTGGTACCAAGTAGAAGGCATGGAATGGCCTAGGgttagtagctgtcttctctttttctcctgaaatggtactttgtgtctctg #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG tagagatctatagtgagaactggtttgtaactttctattcaccttcacagGTGGACTTTGATAATCCTGATTATGAGAGGTTCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtaaggtgcacacgaatgaagggctgtcctgttttgagagtgtttgtgtg #### Hif1an_ID9069_7 --> 0 - 0 Original Alignment GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGgtgagtgcactcagcattcaacatgtagtgcaccaattcaagtaggagct Alignment from CESAR GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGgtgagtgcactcagcattcaacatgtagtgcaccaattcaagtaggagct Alignment from Spaln_aa2Genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGgtgagtgcactcagcattcaacatgtagtgcaccaattcaagtaggagct Alignment from Spaln_nt2Genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGgtgagtgcactcagcattcaacatgtagtgcaccaattcaagtaggagct Alignment from Pairagon GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGgtgagtgcactcagcattcaacatgtagtgcaccaattcaagtaggagct Alignment from Exonerate_protein2genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAG tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGgtgagtgcactcagcattcaacatgtagtgcaccaattcaagtaggagct Alignment from Exonerate_coding2genome GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAGGTGGGGCCTTTG tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGGTGAGTGCACTCagcattcaacatgtagtgcaccaattcaagtaggagct Alignment from GeneWise GGGGCTCCCACCCCTAAGAGAATCGAATATCCTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAGGTGGGGCCTTTGTTGAACACCATGATTAAAGGCCGTTACAAC tagtcccggttaagaatagtgcacgagctaattttatgaaatctgtgcagGGGGCCCCTACCCCTAAGCGAATTGAATATCTTCTCAAAGCTCATCAGAAAGTAGCCATCATGAGAAACATCAAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAGGAGGTGAGTGCACTCAGCATTCAACATGTAGTGCACCAATTCAAGtaggagct #### Hnrnpul2_ID2405_9 --> 0 - 0 Original Alignment ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag Alignment from CESAR ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag Alignment from Spaln_aa2Genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag Alignment from Spaln_nt2Genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag Alignment from Pairagon ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag Alignment from Exonerate_protein2genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag Alignment from Exonerate_coding2genome ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag Alignment from GeneWise ATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTTCAGCAAGCCTCCCAGTGCCTTAGTAAGCTGGTCCAGATTGCTTCACGATCAAAGAGGAATTTTATTCTTGATCAG actcaatgctgcagctgattatgtaagtcccagacatactgtccttacagATGAAGGGACTTGAGGAGCCAGAGATGGACCCCAAAAGCCGAGACCTCTTAGTCCAGCAAGCCTCCCAATGCCTTAGTAAACTGGTCCAGATTGCTTCACGGTCAAAGAGGAATTTCATTCTTGATCAGgtgaggataagcagctcaagacaagaatcttgcatgagttcctgattcag #### Hoga1_ID8379_2 --> 2 - 1 Original Alignment gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccaggaTATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGtgtacggactggaacccctgaacctgggggttcctactggctgtgggggca Alignment from CESAR gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccaggaTATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGtgtacggactggaacccctgaacctgggggttcctactggctgtgggggca Alignment from Spaln_aa2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGTgtacggactggaacccctgaacctgggggttcctactggctgtgggggca Alignment from Spaln_nt2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGTgtacggactggaacccctgaacctgggggttcctactggctgtgggggca Alignment from Pairagon GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGTgtacggactggaacccctgaacctgggggttcctactggctgtgggggca Alignment from Exonerate_protein2genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGTgtacggactggaacccctgaacctgggggttcctactggctgtgggggca Alignment from Exonerate_coding2genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGTgtacggactggaacccctgaacctgggggttcctactggctgtgggggca Alignment from GeneWise GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gtgttcttggacatgtcatagtaggtagagctggctgttcctctccccagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTTGAGCGCCTAGACGTGGTAAGCCGTGTTCGTCAGGCCATACCTAAGGACAAGTCCCTGATAGCTGGTTCTAGCTGCAAGTgtacggactggaacccctgaacctgggggttcctactggctgtgggggca #### Hoga1_ID8383_6 --> 2 - 0 Original Alignment gaGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagggGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTGT---CTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc Alignment from CESAR gaGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagggGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTGT---CTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc Alignment from Spaln_aa2Genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagGGGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTGT---CTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc Alignment from Spaln_nt2Genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagGGGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTG---TCTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc Alignment from Pairagon GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagGGGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTGT---CTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc Alignment from Exonerate_protein2genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagGGGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTGT---CTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc Alignment from Exonerate_coding2genome GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagGGGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTGT---CTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc Alignment from GeneWise GAGCTGTTGGGGGCATATGTGGCTTGGCCAATGTCTTGGGGGCCCAGGTGTGCCAGCTGGAGAGACTCTGCCTCACAGGGCAGTGGGAAGCTGCCCAGGAACTACAGCACCGTCTCATCGAGCCCAACACTGCG gccatccttataatgcatgttctatgtcaagttatgggatttcttttcagGGGCTGTGGGTGGTATTAGTGGGTTGGCAAATGTTTTAGGGGCTCAGGTGTGT---CTGCAGAGACTCTGTCTTACAGGGCAGTGGGAGGCTGCCCAGGAATTGCAGCGTCGCCTCATTGAGCCCAACACTGCAgtgagttcccaatgggccctactgacaattgggccctgtgcaatatctcc #### Hps1_ID8611_17 --> 0 - 2 Original Alignment GGATACAAA---CTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACag actataacttctttaagaccaccttctgctactccctgcccaccacccagGGATACAAGAAAGTGCAGATGATTGATGTCCCTGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACaggtatgactcattggccatggagccacctttccagctatctgtgggtggca Alignment from CESAR GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACag actataacttctttaagaccaccttctgctactccctgcccaccacccagGGATACAAGAAAGTGCAGATGATTGATGTCCCTGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACaggtatgactcattggccatggagccacctttccagctatctgtgggtggca Alignment from Spaln_aa2Genome GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG actataacttctttaagaccaccttctgctactccctgcccaccacccagGGATACAAGAAAGTGCAGATGATTGATGTCCCTGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtatgactcattggccatggagccacctttccagctatctgtgggtggca Alignment from Spaln_nt2Genome GGATACAA---ACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG actataacttctttaagaccaccttctgctactccctgcccaccacccagGGATACAAGAAAGTGCAGATGATTGATGTCCCTGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtatgactcattggccatggagccacctttccagctatctgtgggtggca Alignment from Pairagon GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG actataacttctttaagaccaccttctgctactccctgcccaccacccagGGATACAAGAAAGTGCAGATGATTGATGTCCCTGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtatgactcattggccatggagccacctttccagctatctgtgggtggca Alignment from Exonerate_protein2genome GGATAC---AAACTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG actataacttctttaagaccaccttctgctactccctgcccaccacccagGGATACAAGAAAGTGCAGATGATTGATGTCCCTGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtatgactcattggccatggagccacctttccagctatctgtgggtggca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGATACAAA---CTGCAGATGATTGAGGTGCCTGTCCTCTCGGATGACTCCGTCCCCATTGGCGTGCTGGGAGGTGACTACTACAG actataacttctttaagaccaccttctgctactccctgcccaccacccagGGATACAAGAAAGTGCAGATGATTGATGTCCCTGTCCTCTCAGATGACTCCATACCCACTGGGGTTTTGGGAGGAGACTACTACAGgtatgactcattggccatggagccacctttccagctatctgtgggtggca #### Hps1_ID8613_15 --> 1 - 0 Original Alignment cTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggcagaaagacttgtgttaacacaaagtaacaattgttttgacagcTACCTAGAAGATTTCCCTAGTCTGGTCCACTCCATATACGTTGACCGAACAACTGGTCAGATTGTGGCCCCCTCCCTCAGTCCCAATGAGAGGATGTCTTCTGAGTTAGGCAAGGGGCCATTGGCTGCTTTTGTTAAAGCCAAAgtacccattcccctggccctgggggtttttcagtgagccatcctagtctc Alignment from CESAR cTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggcagaaagacttgtgttaacacaaagtaacaattgttttgacagcTACCTAGAAGATTTCCCTAGTCTGGTCCACTCCATATACGTTGACCGAACAACTGGTCAGATTGTGGCCCCCTCCCTCAGTCCCAATGAGAGGATGTCTTCTGAGTTAGGCAAGGGGCCATTGGCTGCTTTTGTTAAAGCCAAAgtacccattcccctggccctgggggtttttcagtgagccatcctagtctc Alignment from Spaln_aa2Genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggcagaaagacttgtgttaacacaaagtaacaattgttttgacagCTACCTAGAAGATTTCCCTAGTCTGGTCCACTCCATATACGTTGACCGAACAACTGGTCAGATTGTGGCCCCCTCCCTCAGTCCCAATGAGAGGATGTCTTCTGAGTTAGGCAAGGGGCCATTGGCTGCTTTTGTTAAAGCCAAAgtacccattcccctggccctgggggtttttcagtgagccatcctagtctc Alignment from Spaln_nt2Genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggcagaaagacttgtgttaacacaaagtaacaattgttttgacagCTACCTAGAAGATTTCCCTAGTCTGGTCCACTCCATATACGTTGACCGAACAACTGGTCAGATTGTGGCCCCCTCCCTCAGTCCCAATGAGAGGATGTCTTCTGAGTTAGGCAAGGGGCCATTGGCTGCTTTTGTTAAAGCCAAAgtacccattcccctggccctgggggtttttcagtgagccatcctagtctc Alignment from Pairagon CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggcagaaagacttgtgttaacacaaagtaacaattgttttgacagCTACCTAGAAGATTTCCCTAGTCTGGTCCACTCCATATACGTTGACCGAACAACTGGTCAGATTGTGGCCCCCTCCCTCAGTCCCAATGAGAGGATGTCTTCTGAGTTAGGCAAGGGGCCATTGGCTGCTTTTGTTAAAGCCAAAgtacccattcccctggccctgggggtttttcagtgagccatcctagtctc Alignment from Exonerate_protein2genome CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggcagaaagacttgtgttaacacaaagtaacaattgttttgacagCTACCTAGAAGATTTCCCTAGTCTGGTCCACTCCATATACGTTGACCGAACAACTGGTCAGATTGTGGCCCCCTCCCTCAGTCCCAATGAGAGGATGTCTTCTGAGTTAGGCAAGGGGCCATTGGCTGCTTTTGTTAAAGCCAAAgtacccattcccctggccctgggggtttttcagtgagccatcctagtctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTACCTGGAGGATTTCCCAGGCCTGGTCCACTTCATCTATGTGGACCGTACAACCGGGCAGATGGTGGCCCCCTCTCTCAGCCCCAACGAAAAGATGTCTTCCGAGTTGGGCAAGGGGCCCCTGGCTGCCTTTGTCAAAGCCAAG gtagaggcagaaagacttgtgttaacacaaagtaacaattgttttgacagCTACCTAGAAGATTTCCCTAGTCTGGTCCACTCCATATACGTTGACCGAACAACTGGTCAGATTGTGGCCCCCTCCCTCAGTCCCAATGAGAGGATGTCTTCTGAGTTAGGCAAGGGGCCATTGGCTGCTTTTGTTAAAGCCAAAgtacccattcccctggccctgggggtttttcagtgagccatcctagtctc #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcaggGAGAGACTTTTGGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from CESAR gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcaggGAGAGACTTTTGGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Spaln_nt2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Pairagon GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagGGAGAGACTTTTGGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC tcaatgactgcccctggctgagcttcagaaccctggcttctgtgttgcagggagAGACTTTTGGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgatatatattcataggaataacaaggctattggaaattca #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGaagtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGaagtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtgttctgtggtgtagagctcaatattttttgtgttcttgttcctcagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTATCAGCTCAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCATCTACAGGACCAAGCCCAAAAACTTATGAAgtgggcgtgttatgtctgaggatgagaccagtagttaaggcacatcaatg #### Hps1_ID8616_12 --> 0 - 2 Original Alignment AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAGGTGAGCCAGGTTCATCCTGGgagtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from CESAR AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGga tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAGGTGAGCCAGGTTCATCCTGGgagtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Spaln_aa2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Spaln_nt2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Pairagon AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Exonerate_protein2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg #### Hps1_ID8619_9 --> 2 - 0 Original Alignment gtAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG cattagcatacctccagccgagcccatattactgtcattttctcttgtaggtAGCCTAATT---CTAGATGGGGGCACCCCACCCAGTGATGCCATCGAGgtagggtactcatgtggtatcctctagctgttctgagggccattagccct Alignment from CESAR gtAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG cattagcatacctccagccgagcccatattactgtcattttctcttgtaggtAGCCTAATT---CTAGATGGGGGCACCCCACCCAGTGATGCCATCGAGgtagggtactcatgtggtatcctctagctgttctgagggccattagccct Alignment from Spaln_aa2Genome GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG cattagcatacctccagccgagcccatattactgtcattttctcttgtagGTAGCCTAATT---CTAGATGGGGGCACCCCACCCAGTGATGCCATCGAGgtagggtactcatgtggtatcctctagctgttctgagggccattagccct Alignment from Spaln_nt2Genome GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG cattagcatacctccagccgagcccatattactgtcattttctcttgtagGTAGCCTAAT---TCTAGATGGGGGCACCCCACCCAGTGATGCCATCGAGgtagggtactcatgtggtatcctctagctgttctgagggccattagccct Alignment from Pairagon GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG cattagcatacctccagccgagcccatattactgtcattttctcttgtagGTAGCCTAATT---CTAGATGGGGGCACCCCACCCAGTGATGCCATCGAGgtagggtactcatgtggtatcctctagctgttctgagggccattagccct Alignment from Exonerate_protein2genome GCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG cattagcatacctccagccgagcccatattactgtcattttctcttgtagGTAGCCTAATTCTAGATGGGGGCACCCCACCCAGTGATGCCATCGAGgtagggtactcatgtggtatcctctagctgttctgagggccattagccct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG cattagcatacctccagccgagcccatattactgtcattttctcttgtagGTAGCCTAATT---CTAGATGGGGGCACCCCACCCAGTGATGCCATCGAGgtagggtactcatgtggtatcctctagctgttctgagggccattagccct #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagcCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagcCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGAC---------CTCCTTCTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCC---------TTCTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG cctcccacaccattttagttgtattctcttccaccccctttttctgttagCCAAGGCGCAAGCACCCTGTGCCCGGCAGACCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagtgcagatacgcagaataggggtaaactaactgcgctaagatagaa #### Hps1_ID8623_5 --> 0 - 2 Original Alignment GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCgg ttggctcctccctcccataccaccaccagctcctgatctttctcttacagGCAGTAGAGCGACTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAGCGGCATGTGGTCCAAGCAATCAATGCCAGCCCTGAGCGGGGTGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCTgggtgagtcagtgggtataaagaaaactgtccctaacctttgtatgcatcaa Alignment from CESAR GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCgg ttggctcctccctcccataccaccaccagctcctgatctttctcttacagGCAGTAGAGCGACTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAGCGGCATGTGGTCCAAGCAATCAATGCCAGCCCTGAGCGGGGTGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCTgggtgagtcagtgggtataaagaaaactgtccctaacctttgtatgcatcaa Alignment from Spaln_aa2Genome GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG ttggctcctccctcccataccaccaccagctcctgatctttctcttacagGCAGTAGAGCGACTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAGCGGCATGTGGTCCAAGCAATCAATGCCAGCCCTGAGCGGGGTGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCTGGgtgagtcagtgggtataaagaaaactgtccctaacctttgtatgcatcaa Alignment from Spaln_nt2Genome GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG ttggctcctccctcccataccaccaccagctcctgatctttctcttacagGCAGTAGAGCGACTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAGCGGCATGTGGTCCAAGCAATCAATGCCAGCCCTGAGCGGGGTGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCTGGgtgagtcagtgggtataaagaaaactgtccctaacctttgtatgcatcaa Alignment from Pairagon GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG ttggctcctccctcccataccaccaccagctcctgatctttctcttacagGCAGTAGAGCGACTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAGCGGCATGTGGTCCAAGCAATCAATGCCAGCCCTGAGCGGGGTGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCTGGgtgagtcagtgggtataaagaaaactgtccctaacctttgtatgcatcaa Alignment from Exonerate_protein2genome GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG ttggctcctccctcccataccaccaccagctcctgatctttctcttacagGCAGTAGAGCGACTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAGCGGCATGTGGTCCAAGCAATCAATGCCAGCCCTGAGCGGGGTGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCTGGgtgagtcagtgggtataaagaaaactgtccctaacctttgtatgcatcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCAGTGGAGCGGCTCATTCACCCCCAGCTCTGCGAACAGAGCATCGAGACGCTAGAGCGGCACGTGGTTCAAGCCATCAACGCCAGCCCCGAGCGGGGCGGTGAAGAGGTCCTGCACGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCCGG ttggctcctccctcccataccaccaccagctcctgatctttctcttacagGCAGTAGAGCGACTCATTCACCCCCAGCTCTGTGAACAGAGCATTGAGACACTAGAGCGGCATGTGGTCCAAGCAATCAATGCCAGCCCTGAGCGGGGTGGTGAAGAAGTCCTGCATGCCTTCCTGCTGGTGCACTGCAAGCTGTTGGCTTTCTACTCTGGgtgagtcagtgggtataaagaaaactgtccctaacctttgtatgcatcaa #### Hps1_ID8625_3 --> 0 - 2 Original Alignment TTTGGAGAGTACCTGTTCGTCGCCATCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGAGGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGga aagcccaagggaagccactggggcccccggaccttaacaactgaccgcagTTTGGAGAGTACTTGTTTGCTGCAATCAATGGAGACCACACTGAGAGTGAGGGGGAACTGCCGAGG---CTGTGTGTGCTTAAGTACTTATTTGAGGTGCACTTTGGGCTAGTGACTGTGGATGGCCAGCTCATTTGGAAAgagtaaacaaccaaatcaatccccaacccctaatattgcctccatgtaacag Alignment from CESAR TTTGGAGAGTACCTGTTCGTCGCCATCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGAGGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGga aagcccaagggaagccactggggcccccggaccttaacaactgaccgcagTTTGGAGAGTACTTGTTTGCTGCAATCAATGGAGACCACACTGAGAGTGAGGGGGAACTGCCGAGG---CTGTGTGTGCTTAAGTACTTATTTGAGGTGCACTTTGGGCTAGTGACTGTGGATGGCCAGCTCATTTGGAAAgagtaaacaaccaaatcaatccccaacccctaatattgcctccatgtaacag Alignment from Spaln_aa2Genome TTTGGAGAGTACCTGTTCGTCGCCATCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGAGGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGGA aagcccaagggaagccactggggcccccggaccttaacaactgaccgcagTTTGGAGAGTACTTGTTTGCTGCAATCAATGGAGACCACACTGAGAGTGAGGGGGAACTGCCG---AGGCTGTGTGTGCTTAAGTACTTATTTGAGGTGCACTTTGGGCTAGTGACTGTGGATGGCCAGCTCATTTGGAAAGAgtaaacaaccaaatcaatccccaacccctaatattgcctccatgtaacag Alignment from Spaln_nt2Genome TTTGGAGAGTACCTGTTCGTCGCCATCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGAGGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGGA aagcccaagggaagccactggggcccccggaccttaacaactgaccgcagTTTGGAGAGTACTTGTTTGCTGCAATCAATGGAGACCACACTGAGAGTGAGGGGGAACTGCC---GAGGCTGTGTGTGCTTAAGTACTTATTTGAGGTGCACTTTGGGCTAGTGACTGTGGATGGCCAGCTCATTTGGAAAGAgtaaacaaccaaatcaatccccaacccctaatattgcctccatgtaacag Alignment from Pairagon TTTGGAGAGTACCTGTTCGTCGCCATCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGAGGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGGA aagcccaagggaagccactggggcccccggaccttaacaactgaccgcagTTTGGAGAGTACTTGTTTGCTGCAATCAATGGAGACCACACTGAGAGTGAGGGGGAACTGCCGAGG---CTGTGTGTGCTTAAGTACTTATTTGAGGTGCACTTTGGGCTAGTGACTGTGGATGGCCAGCTCATTTGGAAAGAgtaaacaaccaaatcaatccccaacccctaatattgcctccatgtaacag Alignment from Exonerate_protein2genome TTTGGAGAGTACCTGTTCGTCGCCATCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGAGGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGGA aagcccaagggaagccactggggcccccggaccttaacaactgaccgcagTTTGGAGAGTACTTGTTTGCTGCAATCAATGGAGACCACACTGAGAGTGAGGGGGAACTGCCGAGG---CTGTGTGTGCTTAAGTACTTATTTGAGGTGCACTTTGGGCTAGTGACTGTGGATGGCCAGCTCATTTGGAAAGAgtaaacaaccaaatcaatccccaacccctaatattgcctccatgtaacag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTGGAGAGTACCTGTTCGTCGCCATCAACGGAGACCACAGTGAGAGCGAGGGGGACCTGCGGAGGAAACTGTGTGTGCTCAAGTATCTATTCGAGGTGCACTTCGGGCTGGTGACTGTGGACGGCCAGCTCATCCGGAAGGA aagcccaagggaagccactggggcccccggaccttaacaactgaccgcagTTTGGAGAGTACTTGTTTGCTGCAATCAATGGAGACCACACTGAGAGTGAGGGGGAACTGCCGAGG---CTGTGTGTGCTTAAGTACTTATTTGAGGTGCACTTTGGGCTAGTGACTGTGGATGGCCAGCTCATTTGGAAAGAgtaaacaaccaaatcaatccccaacccctaatattgcctccatgtaacag #### Hps1_ID8626_2 --> 0 - 0 Original Alignment CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgctccctgtttcttatttctttagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCCTGGCCCCAGTCATCATCTCCTCCATGACAATGATGGAGAGGCTGTTGGACACGTATACTTGCTTCTCAACGGAAAATGACAACCACTTGTATGTTCTGCATCTGgtgagcgttttagccaagagtggggaatgatctgcctctccgcctctaat Alignment from CESAR CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgctccctgtttcttatttctttagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCCTGGCCCCAGTCATCATCTCCTCCATGACAATGATGGAGAGGCTGTTGGACACGTATACTTGCTTCTCAACGGAAAATGACAACCACTTGTATGTTCTGCATCTGgtgagcgttttagccaagagtggggaatgatctgcctctccgcctctaat Alignment from Spaln_aa2Genome CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgctccctgtttcttatttctttagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCCTGGCCCCAGTCATCATCTCCTCCATGACAATGATGGAGAGGCTGTTGGACACGTATACTTGCTTCTCAACGGAAAATGACAACCACTTGTATGTTCTGCATCTGgtgagcgttttagccaagagtggggaatgatctgcctctccgcctctaat Alignment from Spaln_nt2Genome CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgctccctgtttcttatttctttagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCCTGGCCCCAGTCATCATCTCCTCCATGACAATGATGGAGAGGCTGTTGGACACGTATACTTGCTTCTCAACGGAAAATGACAACCACTTGTATGTTCTGCATCTGgtgagcgttttagccaagagtggggaatgatctgcctctccgcctctaat Alignment from Pairagon CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgctccctgtttcttatttctttagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCCTGGCCCCAGTCATCATCTCCTCCATGACAATGATGGAGAGGCTGTTGGACACGTATACTTGCTTCTCAACGGAAAATGACAACCACTTGTATGTTCTGCATCTGgtgagcgttttagccaagagtggggaatgatctgcctctccgcctctaat Alignment from Exonerate_protein2genome CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgctccctgtttcttatttctttagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCCTGGCCCCAGTCATCATCTCCTCCATGACAATGATGGAGAGGCTGTTGGACACGTATACTTGCTTCTCAACGGAAAATGACAACCACTTGTATGTTCTGCATCTGgtgagcgttttagccaagagtggggaatgatctgcctctccgcctctaat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgctccctgtttcttatttctttagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCCTGGCCCCAGTCATCATCTCCTCCATGACAATGATGGAGAGGCTGTTGGACACGTATACTTGCTTCTCAACGGAAAATGACAACCACTTGTATGTTCTGCATCTGgtgagcgttttagccaagagtggggaatgatctgcctctccgcctctaat #### Hpse2_ID8648_10 --> 0 - 2 Original Alignment GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACaagtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt Alignment from CESAR GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACaa ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACaagtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt Alignment from Spaln_aa2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt Alignment from Spaln_nt2Genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt Alignment from Pairagon GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt Alignment from Exonerate_protein2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt Alignment from Exonerate_coding2genome GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt Alignment from GeneWise GACTATTGGCTTTCTCTGCTTTACAAGCGTCTGATTGGCCCCAAAGTCCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGGCCAGGAAGAGTCATCCGAGACAAACTAAGAATCTATGCTCACTGCACAAACCACCACAA ccttacaagaaactacagacaagctaattcttcatacttttgttttacagGACTATTGGCTTTCTCTGCTTTATAAGCGTCTAATTGGCCCTAAAGTTCTGGCAGTGCATGTAGCTGGGCTCCAGCGGAAGCCTCGACCAGGAAGAGTCATCCGGGACAAACTAAGAATCTATTCCCACTGCACAAATCATCACAAgtgagattttcctcaaatggtgggagtagatgatcacccaatagcagctt #### Hpse2_ID8671_9 --> 1 - 0 Original Alignment aTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagaTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa Alignment from CESAR aTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagaTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa Alignment from Spaln_aa2Genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa Alignment from Spaln_nt2Genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa Alignment from Pairagon ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa Alignment from Exonerate_protein2genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa Alignment from Exonerate_coding2genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa Alignment from GeneWise ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA acatatttcttggaggctttgttgataagaaccctggcctgtgtctccagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtacgtgctggtccagatttccaagggctttgcaaaccatttaattataa #### Hpse2_ID8673_7 --> 1 - 0 Original Alignment tTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagtTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa Alignment from CESAR tTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagtTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa Alignment from Spaln_aa2Genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagTTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa Alignment from Spaln_nt2Genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagTTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa Alignment from Pairagon TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagTTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa Alignment from Exonerate_protein2genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagTTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa Alignment from Exonerate_coding2genome TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagTTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa Alignment from GeneWise TTGCTACATTGATGGCCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTCGTCTGTTAGATACACTCTCTGACCAGATTAGGAAAATTCAGAAA catattcaggatttcaggatgtactgacagtgcccccacccctttcccagTTGCTACATTGATGGGCGGGTGGTCAAGGTGATGGACTTCCTGAAAACTTGTCTGTTAGATACACTCTCCGACCAGATCAGGAAAATTCAGAAAgtatgtaccatttattgcagggttttcagtacagtaccagctaaggggaa #### Hpse2_ID8719_2 --> 1 - 1 Original Alignment cTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATg gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagcTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATggtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc Alignment from CESAR cTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATg gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagcTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATggtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc Alignment from Spaln_aa2Genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagCTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc Alignment from Spaln_nt2Genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagCTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc Alignment from Pairagon CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagCTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc Alignment from Exonerate_protein2genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagCTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc Alignment from Exonerate_coding2genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagCTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc Alignment from GeneWise CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG gataagacttctcccaacatcctttcctctttcaaccctgccgttcccagCTCCAAGCGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgagtaatttcgtcctgacagcaaaatgtcagggggagcaggggtaagc #### Hrasls5_ID2199_5 --> 2 - 0 Original Alignment gtGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTC---------AGATATGGTGTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcaggtGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt Alignment from CESAR gtGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGT---------GTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcaggtGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt Alignment from Spaln_aa2Genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGA---------TATGGTGTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcagGTGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt Alignment from Spaln_nt2Genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCA---------GATATGGTGTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcagGTGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt Alignment from Pairagon GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCA---------GATATGGTGTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcagGTGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt Alignment from Exonerate_protein2genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGA---------TATGGTGTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcagGTGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt Alignment from Exonerate_coding2genome GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGA---------TATGGTGTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcagGTGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt Alignment from GeneWise GTGAGTTTGAGGCAGGGAGCATCACCTCTATCTTCAGCAACCGAGCTGTGGTGAAGTACAGCCGGCTGGAGGATGTGCTGCACGGTTGCTCCTGGAAGATCAACAACAAGCTGGATGGCACATACCTGCCGCTGCCGGTGGACAAGATCATGCAGCGCACAAAAAACATGATAAACAAGATAGTTCAGTACAGCCTAATTGAGGGGAACTGTGAGCACTTTGTCAATGACCTCAGATATGGT---------GTGCCCAGGAGCCAGCAG aacacgccctttggtctttgcacattcccccctggttctcggttctgcagGTGAGTTTGAGACAGCAAGCATTACCTCAATATTCAGCAACTGGGCTGTGGTGAAGTACAGCCGGCTGGAAGATGTGCTGCATGGTTGCTCATGGAAGATTAATAATAAGCTTGATGGGACATATCTGCCACTGCCAGTAGACAAGATCATGCAATGCACAGAAAACATGATCAACAAGATTGTACAGTACAGCCTGATTGAGGGCAACTGTGAGCACTTTGTGAATGATCTCAGATATGGTGGATATGGTGTGCCCAGGAGCCAGCATgtatgttcttgagtgctttcagtgactcattaccatctgatggtgtactt #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagacCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCggtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAg aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagacCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCggtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagACCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagACCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagACCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagACCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagACCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCTGCAAGTCAATCAG aattccatagtctcatctttgttaaatcactatcccttctgtgcccccagACCAAGTGCTGCTGTGCTACTATGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagaacagtcaggaggggagaatggtgcttagagtgtttacaaagttt #### Ina_ID10071_2 --> 0 - 2 Original Alignment GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACag attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACaggtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa Alignment from CESAR GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACag attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACaggtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa Alignment from Spaln_aa2Genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACAGgtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa Alignment from Spaln_nt2Genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACAGgtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa Alignment from Pairagon GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACAGgtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa Alignment from Exonerate_protein2genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACAGgtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa Alignment from Exonerate_coding2genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACAGgtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa Alignment from GeneWise GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG attgggtttggggtccttgatttgtacatctctctgcccctctgttccagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTCAAAATGGCCCTCGACATTGAGATTACAGCTTACAGgtaatcagggctgtatgatttccctaatgaatgatgtgtatcctggagaa #### Incenp_ID2606_13 --> 0 - 2 Original Alignment GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGag ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAGCCGGAACGTCGGGAACAGGAGCAAAGGGAACAGGAACGCAGGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGaggtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca Alignment from CESAR GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGag ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAGCCGGAACGTCGGGAACAGGAGCAAAGGGAACAGGAACGCAGGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGaggtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca Alignment from Spaln_aa2Genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGA G---CAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGA ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAgccggaacgtcgggaacaggagcaaagggaacaggaacgcagGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGAGgtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca Alignment from Spaln_nt2Genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAGCCGGAACGTCGGGAACAGGAGCAAAGGGAACAGGAACGCAGGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGAGgtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca Alignment from Pairagon GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAGCCGGAACGTCGGGAACAGGAGCAAAGGGAACAGGAACGCAGGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGAGgtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca Alignment from Exonerate_protein2genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAGCCGGAACGTCGGGAACAGGAGCAAAGGGAACAGGAACGCAGGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGAGgtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca Alignment from Exonerate_coding2genome GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAGCCGGAACGTCGGGAACAGGAGCAAAGGGAACAGGAACGCAGGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGAGgtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca Alignment from GeneWise GAGGAAGAGGAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGGCCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAGGGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGGGCCAAGAG ttcacccccaatgatgctgacactcctccctggtgcctctccttctgtagGAGGAGGAGGAGTGGCGGCATCAAGAAATGCTACAACGGAAAAATGAGGAAGAAGAAGAGCACCGCAAGGTAGCTAAGGCCAGGTGCCTGGCAGAGCAGCATGAACAGGAGAGGCAAAGAGAGCCGGAACGTCGGGAACAGGAGCAAAGGGAACAGGAACGCAGGGAACAGGAACGGAAGGAGCAGGAACGTCAGGAACAGGAGCAGGAGCGCCTTCGGGCCAAGAGgtaaggtccactggccattggctgctgggcagtgtcaggattgggtgaca #### Incenp_ID2607_12 --> 0 - 0 Original Alignment GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca Alignment from CESAR GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca Alignment from Spaln_aa2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca Alignment from Spaln_nt2Genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAAGGA------AGATGTAGAGGCAAAAAGGAAGG---AGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca Alignment from Pairagon GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAA------GGAAGATGTAGAGGCAAAAAGGA---AGGAGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca Alignment from Exonerate_protein2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca Alignment from Exonerate_coding2genome GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca Alignment from GeneWise GCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGAAGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAG catgctcacactaaaagggactgcttgactaaactctgtgtgtattgcagGCTGCAGAGGAGCGTCTGGCTGAGAAAGCAAAGGAAAAAGCAACTGCTAAG------GAAGATGTAGAGGCAAAAAGGAAG---GAGGAGGAAGCCCGTAGGCTTAGGTGGGTCCAACAAgtaggtttggattgaacatagaaacagttcacaaaacaataattggtgca #### Jak2_ID6226_2 --> 2 - 2 Original Alignment gtATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAag attatttggtagaatgctggttagttatggctccttgccttaaccctcaggtATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAaggtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac Alignment from CESAR gtATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAag attatttggtagaatgctggttagttatggctccttgccttaaccctcaggtATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAaggtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac Alignment from Spaln_aa2Genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG attatttggtagaatgctggttagttatggctccttgccttaaccctcagGTATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAAGgtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac Alignment from Spaln_nt2Genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG attatttggtagaatgctggttagttatggctccttgccttaaccctcagGTATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAAGgtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac Alignment from Pairagon GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG attatttggtagaatgctggttagttatggctccttgccttaaccctcagGTATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAAGgtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac Alignment from Exonerate_protein2genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG attatttggtagaatgctggttagttatggctccttgccttaaccctcagGTATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAAGgtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac Alignment from Exonerate_coding2genome GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG attatttggtagaatgctggttagttatggctccttgccttaaccctcagGTATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAAGgtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac Alignment from GeneWise GTATTACGCCTGTGTATCATAATATGTTTGCGTTAATGAGTGAAACCGAAAGGATCTGGTACCCACCCAATCATGTCTTCCACATAGACGAGTCAACCAGGCATGACATACTCTACAGGATAAG attatttggtagaatgctggttagttatggctccttgccttaaccctcagGTATTACACCTGTGTATCATAATATGTTTGCATTAATGAGTGAAACTGAAAGGATCTGGTATCCACCCAATCATGTCTTCCACATAGATGAGTCAACCAGGCACGACATACTCTACAGAATAAGgtacagctgtcggcaccaagtcattggcatacaaacaagtcctgggtgac #### Jak2_ID6231_7 --> 0 - 2 Original Alignment GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATAttgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact Alignment from CESAR GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATAttgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact Alignment from Spaln_aa2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact Alignment from Spaln_nt2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact Alignment from Pairagon GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact Alignment from Exonerate_protein2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact Alignment from Exonerate_coding2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact Alignment from GeneWise GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgattctgcaaatcatggttttatctgttgtcttgtaccaccatagGAGATAGAACTTACCTCACTGAAGGAAGCCCTGTCATCTGTATCATTGATTGATGGGTACTACAGATTAACAGCGGATGCGCACCATTATCTCTGCAAGGAGGTGGCACCCCCAACTGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtgagcaatcctacattctgtaggcataacggtgggatttcataaggact #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata #### Kat5_ID1113_9 --> 0 - 0 Original Alignment ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG tatcctcagcacccttactggtgaccacctcttccccttccgtgttccagACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc Alignment from CESAR ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG tatcctcagcacccttactggtgaccacctcttccccttccgtgttccagACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc Alignment from Spaln_aa2Genome ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG tatcctcagcacccttactggtgaccacctcttccccttccgtgttccagACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc Alignment from Spaln_nt2Genome ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG tatcctcagcacccttactggtgaccacctcttccccttccgtgttccagACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc Alignment from Pairagon ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG tatcctcagcacccttactggtgaccacctcttccccttccgtgttccagACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc Alignment from Exonerate_protein2genome ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG tatcctcagcacccttactggtgaccacctcttccccttccgtgttccagACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc Alignment from Exonerate_coding2genome ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG tatcctcagcacccttactggtgaccacctcttccccttccgtgttccagACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc Alignment from GeneWise --------------------------------------------------ACCAAATGTGATCTTCGGCACCCTCCAGGCAATGAAATTTACCGCAAGGGCACCATCTCCTTTTTTGAGATTGATGGACGGAAAAACAAG TATCCTCAGCACCCTTACTGGTGACCACCTCTTCCCCTTCCGTGTTCCAGACCAAATGTGATCTTCGGCACCCACCAGGTAACGAAATATACCGCAAGGGCACTATTTCCTTTTTTGACATTGATGGACGAAAAAACAAGgtatctggtttgggcttttctgtacttggaggaaatcccattgaataagc #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg Alignment from CESAR AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg Alignment from Pairagon AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg Alignment from Exonerate_protein2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg Alignment from Exonerate_coding2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg Alignment from GeneWise AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG cttccttgagaacaatctcacactcactcatgtttttttttccgccacagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGATGAGgtaaggccccagcaagggtggaattaaaatctaactgctaactgcttggg #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccacctcctgtgccctctaaccagtttctcattttcttttgtagAAACGGAAGGTTGAGGTAGTTTCACCAACCAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaggccttcgactttttcttaggtactgatatgtttagtcttcactttt #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Spaln_aa2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc Alignment from GeneWise CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tgtccctacactacccccccaagaaggacatatgcctatctatcacacagCCGGCCTCCGCCCAGGCCAGCGGGAAGACGTTGCCAATCCCAGTCCAGATCACCCTCCGCTTCAACTTGCCCAAGGAGCGGGAGGCCATCCCAGGTGATGAGCCTGACCAGCCGCTCTCCTCTAGCTCCTGCCTACAACCCAACCACCGCTCAACGgtaagctgacagcttgcaagaacagtcatcctcataccacctcctgtgcc #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct #### Kazald1_ID9300_2 --> 2 - 0 Original Alignment agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagagCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagcgacagggttattgggtatcttatgtgttttctccagTTCAGAGG Alignment from CESAR agCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagagCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagcgacagggttattggtctctctctctctctctttcagTTCAGAGG Alignment from Spaln_aa2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagAGCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagcgacagggttattgggtatcttatgtgttttctccagTTCAGAGG Alignment from Spaln_nt2Genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagAGCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagcgacagggttattgggtatcttatgtgttttctccagTTCAGAGG Alignment from Pairagon AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagAGCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagcgacagggttattgggtatcttatgtgttttctccagTTCAGAGG Alignment from Exonerate_protein2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagAGCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagcgacagggttattgggtatcttatgtgttttctccagTTCAGAGG Alignment from Exonerate_coding2genome AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagAGCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGgtgagcgacagggttattgggtatcttatgtgttttctccagTTCAGAGG Alignment from GeneWise AGCCCCAGATCCTGTCGCAGCCTCACAATATTTGGAATGTGACCGGACAGGATGTGATCTTTGGCTGTGAGGTGTTTGCCTACCCCATGGCCTCGATTGAGTGGAGGAAAGATGGCTTGGACATCCAGCTGCCGGGGGATGACCCTCATATCTCTGTGCAG------------------------------------------TTTAGGGG gcttaatgtgtcttaaaacctcccctcaattcatgtgctctctgttatagAGCCCCAGATCCTATCACAGCCTCACAATATTTGGAATGTGACTGGACAAGATGTGATCTTTGGCTGTGAGGTCTTTGCCTACCCTATGACCTTGATTGAATGGAGGAAAGATGGCTTTGGCATCCAGCTGCCAGGTGATGACCCTCACATCTCCTTGCAGGTGAGCGACAGGGTTATTGGGTATCTTATGTGTTTTCTCCAGTTCAGAGG #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc #### Kcnip2_ID9610_2 --> 2 - 1 Original Alignment gcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAa atctcatctggctctgttggcttgtgatctgtacttacatttttgttcaggcCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAagtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt Alignment from CESAR gcCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAa atctcatctggctctgttggcttgtgatctgtacttacatttttgttcaggcCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAagtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt Alignment from Spaln_aa2Genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA atctcatctggctctgttggcttgtgatctgtacttacatttttgttcagGCCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt Alignment from Spaln_nt2Genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA atctcatctggctctgttggcttgtgatctgtacttacatttttgttcagGCCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt Alignment from Pairagon GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA atctcatctggctctgttggcttgtgatctgtacttacatttttgttcagGCCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt Alignment from Exonerate_protein2genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA atctcatctggctctgttggcttgtgatctgtacttacatttttgttcagGCCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt Alignment from Exonerate_coding2genome GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA atctcatctggctctgttggcttgtgatctgtacttacatttttgttcagGCCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt Alignment from GeneWise GCCACCCTCCAGGGCCCAGTAAAAAAGCCCTGAAGCAGCGTTTCCTCAAGCTGCTGCCGTGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAA atctcatctggctctgttggcttgtgatctgtacttacatttttgttcagGCCATCCTCCAGGACCCAGTAAAAAGGCCCTGAAGCAGCGTTTCCTCAAGCTGCTACCATGCTGCGGGCCCCAAGCCCTGCCCTCAGTCAGTGAAAgtaagtgcgaacccaggcctttagaggcgtgatatgccttttcagtgggt #### Kdm2a_ID510_11 --> 2 - 0 Original Alignment atATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagatATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg Alignment from CESAR atATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagatATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg Alignment from Spaln_aa2Genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg Alignment from Spaln_nt2Genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg Alignment from Pairagon ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg Alignment from Exonerate_protein2genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg Alignment from Exonerate_coding2genome ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg Alignment from GeneWise ATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAAGGGGTGGACAGAGAAGCCCGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTACGATGGACTTGGCAAAGCCTGCCGAAGTCTTCCAAGTCTGAAGAAAACTTTGTCTGGAGACTCATCCTCAGACTCTACCCGGGGATCCCACAATGGCCAAGTTTGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGTCTTGTAGATAAGTTAGAGTCACTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGACGAAGATGCTCTGATTGCTGATGTAAAG ctcacgcacggttactagtaagttagctcatctctttcctcaccatgaagATATGGAGTTAAATGAGTTGGAGTCTGGAAATGGTGATGAGGAGGGGGTGGACAGAGAAGCCAGACGCATGAACAATAAGCGATCTGTGCTTACCAGCCCTGTTGCTAATGGAGTGAACCTGGATTATGATGGATTTGGCAAAGCTTGTCGAAGTCTCCCAAGTCTGAAAAAAACTTTGTCTGGAGACTCATCTTCAGACTCTACCCAGGGATCTCACAATGGCCAAGTATGGGATCCCCAATGTAGCCCTAAAAAGGATAGGCAAGTGCATCTCACCCATTTTGAACTTGAAGGTCTTCGATGCCTTGTAGACAAATTAGAGTCATTGCCACTGCACAAGAAGTGTGTCCCCACAGGAATAGAAGATGAAGATGCTCTGATTGCTGATGTAAAGgtgaggtgtctttgatatacacatggaagttgcatttcttaatctactgg #### Kdm2a_ID514_7 --> 1 - 0 Original Alignment gTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcaggTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta Alignment from CESAR gTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcaggTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta Alignment from Spaln_aa2Genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcagGTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta Alignment from Spaln_nt2Genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcagGTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta Alignment from Pairagon GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcagGTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta Alignment from Exonerate_protein2genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcagGTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta Alignment from Exonerate_coding2genome GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcagGTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta Alignment from GeneWise GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG agtgtatcaacccatccaactgtcttatccccgttatgtccttgctgcagGTACTGCCTAATGAGTGTTCGTGGCTGCTATACTGACTTCCATGTAGATTTTGGAGGTACTTCTGTTTGGTACCATAACCACCAAGGTGGAAAGgtacaggtatagttggtctttggaattggaaacgatttgcatgctttgta #### Kdm2a_ID515_6 --> 0 - 2 Original Alignment GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaa agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAaagtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa Alignment from CESAR GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAaa agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAaagtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa Alignment from Spaln_aa2Genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAAAgtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa Alignment from Spaln_nt2Genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAAAgtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa Alignment from Pairagon GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAAAgtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa Alignment from Exonerate_protein2genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAAAgtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa Alignment from Exonerate_coding2genome GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAAAgtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa Alignment from GeneWise GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA agcacggagggggaggtgaatggggttaaagttgcccttgttcccatcagGTGGATTTTATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCTATCTTGGAGATGCAGTACCCCAAAGTGCAAAAgtaaaagactcattatgtatccagctccttataacccatctcctgtgcaa #### Kdm2a_ID516_5 --> 2 - 0 Original Alignment ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagggAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt Alignment from CESAR ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagggAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt Alignment from Spaln_aa2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt Alignment from Spaln_nt2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt Alignment from Pairagon GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt Alignment from Exonerate_protein2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt Alignment from Exonerate_coding2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt Alignment from GeneWise TCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG tgagacaagatacttagataggaattttcaccctttctccattttcatagggagCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCAACCGTCCACAgtatggctttgctgtcctttcttaacatgctgatatatcttttttttttt #### Keg1_ID3446_3 --> 0 - 1 Original Alignment GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAa aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAagtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc Alignment from CESAR GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAa aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAagtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc Alignment from Spaln_aa2Genome GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAA aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAAgtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc Alignment from Spaln_nt2Genome GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAA aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAAgtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc Alignment from Pairagon GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAA aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAAgtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc Alignment from Exonerate_protein2genome GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAA aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAAgtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc Alignment from Exonerate_coding2genome GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAA aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAAgtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc Alignment from GeneWise GACATGACAGATGACCTTGACCACTACAACAACACTTATCTAGTGTATTCAAAGGATCCCAAGCACTGTCAGGAATTCCTTGGCTCATCAGAAGTTATTAACTGGAAACAACATTTGCAGATTCAAA aggccgcatcctccataattatcctggtgtctatgccttcttgtccccagGATATAACAGATGACCTAGACCACTACAACAACACTTACCTAGTGTATTCAAAGGATCCCAAACACTGTCAGGAATTCCTTGATTCATCAGAAGTAATTAACTGGAAACAACATTTACAGATTCAAAgtgctgatgtgagcatatgtcaactactattgggacctcccatatgcccc #### Kif11_ID7318_8 --> 0 - 0 Original Alignment GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca Alignment from CESAR GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca Alignment from Spaln_aa2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca Alignment from Spaln_nt2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca Alignment from Pairagon GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca Alignment from Exonerate_protein2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca Alignment from Exonerate_coding2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca Alignment from GeneWise GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG ggtttaacatttgccatataaactcttgcctgccctccattaactcacagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCATAGAGAGAACACCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACAAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTCGAGgtgagtcaactagtagccatggcacttgggagccctttgcagccatggca #### Kif11_ID7324_14 --> 2 - 0 Original Alignment gtAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcaggtAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata Alignment from CESAR gtAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcaggtAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata Alignment from Spaln_aa2Genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcagGTAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata Alignment from Spaln_nt2Genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcagGTAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata Alignment from Pairagon GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcagGTAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata Alignment from Exonerate_protein2genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcagGTAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata Alignment from Exonerate_coding2genome GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcagGTAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata Alignment from GeneWise GTAACCTGATGTCTTCTAGTGTCTCTGCATTAGACACCATTACCACGACAGCACTTGAATCTCTCGTGTCTATTCCAGAAAATGTGTCCGCTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCGTTAGCAGCACAAAGTAAAAGTGTTCTGCAAGGATTGATT attccaaggttcaaccaacaaactttccttaatctcaaaatacttttcagGTAACCGGATGTCTTCTAGTGTCACTGCATTAGACACCATTACCACAACAGCACTTGAATCTCTTGTGTCTATTCCAGAAAATGTGTCCACTCGTGTTTCTCAGATTTCTGATATGATATTGGAAGAGCAATCATTGGCGGCACAAAGCAAAAGTATTCTGCAAGGATTGATTgtgtgaaaatctctttatgttttcgcagtcgtcaccttccagcttggata #### Kif11_ID7330_20 --> 2 - 0 Original Alignment gtATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactaggcATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg Alignment from CESAR gtATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactaggcATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg Alignment from Spaln_aa2Genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactagGCATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg Alignment from Spaln_nt2Genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactagGCATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg Alignment from Pairagon GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactagGCATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg Alignment from Exonerate_protein2genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactagGCATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg Alignment from Exonerate_coding2genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactagGCATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg Alignment from GeneWise GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccagccagcgaattatacctactttctttttgtactgttactagGCATGACCCCGGAGAGGAAAAAATATTTGTATCCAACCACACTTGTGAGAACAGAGCCACGTGATCAGCTCCTTGATGAGCTGCAAAAGAAGCAACCTCCAATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACCAGTCAGgtgaagtaaagtatatttcctaaactctactttacagttatttatgggtg #### Kif20b_ID7003_8 --> 2 - 2 Original Alignment atCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAag ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagatCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAaggtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca Alignment from CESAR atCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAag ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagatCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAaggtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca Alignment from Spaln_aa2Genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagATCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAAGgtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca Alignment from Spaln_nt2Genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagATCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAAGgtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca Alignment from Pairagon ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagATCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAAGgtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca Alignment from Exonerate_protein2genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagATCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAAGgtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca Alignment from Exonerate_coding2genome ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagATCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAAGgtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca Alignment from GeneWise ATCTGCAGTGGGTCCAGGTATCTGACTCTAAAGAAGCATATAGACTCTTAAAACTAGGAGTGAAGCATCAGAGCGTTGCTTTCACCAAACTGAACAATGCTTCTAGTAGAAG ttgctgtcaatttaccaaactaagcacaactctcttctttctccctttagATCTGCAGTGGGTTCAGGTATCTGACTCAAAGGAGGCATATAGACTCCTAAAACTTGGAGTAAAACATAAAAGTGTTGCTTTCTCCAAACTAAACAATGCTTCTAGTAGAAGgtgagttccctgagaaatttcacattaattgatgaagacctaagcgacca #### Kif20b_ID7006_11 --> 1 - 0 Original Alignment gGTTCAGCATGTGCCTTTCCGAGAAAGTAAA------------CTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtaggGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga Alignment from CESAR gGTTCAGCATGTGCCTTTCCGAGAAAGT------------AAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtaggGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga Alignment from Spaln_aa2Genome GGTTCAGCATGTGCCTTTC------------CGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtagGGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga Alignment from Spaln_nt2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTA------------AACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtagGGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga Alignment from Pairagon GGTTCAGCATGTGCCTTT------------CCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtagGGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga Alignment from Exonerate_protein2genome GGTTCAGCATGTGCCTTTC------------CGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtagGGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga Alignment from Exonerate_coding2genome GGTTCAGCATGTGCCTTTC------------CGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtagGGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga Alignment from GeneWise GGTTCAGCATGTGCCTTTCCGAGAAAGT------------AAACTGACCCACTATTTCCAAAGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgcaaacattaagatacagcttatcatagtcattcttttctccttggtagGGTTCAGCAAGTGCTTTTCCGTGAAAGTAACCGTGAAAGTAAGCTGACCCACTATTTTCAAAGTTTTTTCAATGGTAAAGGCAAAATATGCATGATTATAACCATTAGTCAGTCTTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTTGAGAGGgtaagtgttcttagatttatactaaagcatcaaccggtcaggctgcaaga #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTaagtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTaagtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Pairagon GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA agagatgtaatcacagatgtgacttggtgaccaagatctctctctttcagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTATCATTGGAACTTAAGATCCGGGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAGCGGGAAGCTGATTTTAAgtaagctaatcctttgttctatcctggcaatgatttagacatacttgttc #### Kif20b_ID7009_14 --> 1 - 0 Original Alignment gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccaggGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct Alignment from CESAR gGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccaggGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct Alignment from Spaln_aa2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccagGGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct Alignment from Spaln_nt2Genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccagGGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct Alignment from Pairagon GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccagGGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct Alignment from Exonerate_protein2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccagGGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct Alignment from Exonerate_coding2genome GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccagGGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct Alignment from GeneWise GGAGACACTTCTTCATGAACGAGAGATATTAGAAGAAAACGCTGAACGTCGCTTGGCAATCTTCAAAGATTTGGTTGGAAAATGTGACAGTCAAGATGAACCAACAAATAGAATTTGTGACATAGAACTTGAAACTGAA atgatatttttgattaagtcatcttttaatccctctctgctgttcaccagGGAGACAGTTATTCATCAGCAGGAAATATTGGAAGAAAATGCTGAACGGTGTGTGGCAATTTTTGAAGATCTGGCTGGGAAATGTGACAGTCAAGATGAACCAACAAATAAAATTTGTGATATAGAACTAGACACTGAAgtaagctgatgatcacattaacaaacttgatactttctcacaagatctct #### Kif20b_ID7012_17 --> 0 - 1 Original Alignment GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAg ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAggtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg Alignment from CESAR GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAg ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAggtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg Alignment from Spaln_aa2Genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAGgtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg Alignment from Spaln_nt2Genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAGgtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg Alignment from Pairagon GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAGgtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg Alignment from Exonerate_protein2genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAGgtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg Alignment from Exonerate_coding2genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAGgtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg Alignment from GeneWise GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG ttgttattggccctttgcagaaggacatttctaagtgctgccccctgcagGTTGATACATCCTTAACCAGCAACAAGTCAACTTGTAATGAAACAAGTGAAATGCCCAAGAATAGTAGAGCCCAAACACATTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCAAAGAAAGgtgtgtaaataacttggtccaaacagcaggagggaaacatgaccattatg #### Kif20b_ID7015_20 --> 0 - 0 Original Alignment GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg Alignment from CESAR GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg Alignment from Spaln_aa2Genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg Alignment from Spaln_nt2Genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg Alignment from Pairagon GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg Alignment from Exonerate_protein2genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg Alignment from Exonerate_coding2genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg Alignment from GeneWise GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaaaaatgcccccaaggcattcaatatggctcttccttaactttccccagGTATCCGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaactgttagtctactcacatctagataatattggatttactaactttg #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGAGTGTCCGGAAACC---CCAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGT--GGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGAGTGTCCGGAA-----ACCCCAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -AGGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagCAGGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTaggtaagccatcacctctcccttcattctgttaacatactattgatcatgaa Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTaggtaagccatcacctctcccttcattctgttaacatactattgatcatgaa Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTAGgtaagccatcacctctcccttcattctgttaacatactattgatcatgaa Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTAGgtaagccatcacctctcccttcattctgttaacatactattgatcatgaa Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTAGgtaagccatcacctctcccttcattctgttaacatactattgatcatgaa Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTAGgtaagccatcacctctcccttcattctgttaacatactattgatcatgaa Alignment from Exonerate_coding2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTAGgtaagccatcacctctcccttcattctgttaacatactattgatcatgaa Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagtgttaaaactaccatgagtcaacttacctagcctttaccaacagGATGGCAGTGGTTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTAAGACGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGACCACAGGAGCCCTCTAATTCTAGgtaagccatcacctctcccttcattctgttaacatactattgatcatgaa #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaattgcctgcctgcctgcctgcaagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaagtctttcatcatggaggacagaaagtagggacccacaagacctcat #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagaGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagaGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT cctggggtcatgctttaggttgaaggggtgtttcgaattgtattttgtagAGACCAGAATAAGTACAGGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGATCAGCCAGCTgtaaggtgtctaagtagtcccctgttctattaccagagcttccagtcccc #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCAATGAAGATGAACAGAGGTCGggtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCAATGAAGATGAACAGAGGTCGggtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCatgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct #### Lgi1_ID7577_2 --> 1 - 2 Original Alignment aTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCtt tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagaTCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCctgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta Alignment from CESAR aTCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCtt tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagaTCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCctgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta Alignment from Spaln_aa2Genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagATCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCCTgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta Alignment from Spaln_nt2Genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagATCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCCTgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta Alignment from Pairagon ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagATCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCCTgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta Alignment from Exonerate_protein2genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagATCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCCTgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta Alignment from Exonerate_coding2genome ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagATCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCCTgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta Alignment from GeneWise ATCCTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTCTTATTCACACCATCGCTGCAGCTCTT tctgtttgttttgtatgtgtatgtgcataaacgtctcccactcctgccagATCTTTTGTGAGATCTGGTTTTACTGAAATCTCAGAAGGGAGTTTTCTATTCACACCATCGCTACAGCTCCTgtgagccagatccatgtcaagatcattgtcaataaggagggaaatcgtta #### Lgi1_ID7582_6 --> 1 - 1 Original Alignment gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg acatccatgagacacacatcctgagtaattctgccttccctgctgggtagaGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTggtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt Alignment from CESAR gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg acatccatgagacacacatcctgagtaattctgccttccctgctgggtagaGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTggtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt Alignment from Spaln_aa2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acatccatgagacacacatcctgagtaattctgccttccctgctgggtagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTGgtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt Alignment from Spaln_nt2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acatccatgagacacacatcctgagtaattctgccttccctgctgggtagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTGgtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt Alignment from Pairagon GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acatccatgagacacacatcctgagtaattctgccttccctgctgggtagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTGgtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt Alignment from Exonerate_protein2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acatccatgagacacacatcctgagtaattctgccttccctgctgggtagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTGgtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt Alignment from Exonerate_coding2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acatccatgagacacacatcctgagtaattctgccttccctgctgggtagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTGgtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt Alignment from GeneWise GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acatccatgagacacacatcctgagtaattctgccttccctgctgggtagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGACTGTATAATTACTGgtgagttgttgaaaatcatcttatagtagagaactaatgacagtgtgctt #### Lgi1_ID7583_7 --> 2 - 1 Original Alignment aaTTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAg gaggaggtagtattaacttatctttatcccactgatgtttttctttctagaaTTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGggtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac Alignment from CESAR aaTTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAg gaggaggtagtattaacttatctttatcccactgatgtttttctttctagaaTTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGggtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac Alignment from Spaln_aa2Genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG gaggaggtagtattaacttatctttatcccactgatgtttttctttctagAATTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGGgtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac Alignment from Spaln_nt2Genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG gaggaggtagtattaacttatctttatcccactgatgtttttctttctagAATTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGGgtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac Alignment from Pairagon AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG gaggaggtagtattaacttatctttatcccactgatgtttttctttctagAATTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGGgtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac Alignment from Exonerate_protein2genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG gaggaggtagtattaacttatctttatcccactgatgtttttctttctagAATTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGGgtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac Alignment from Exonerate_coding2genome AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG gaggaggtagtattaacttatctttatcccactgatgtttttctttctagAATTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGGgtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac Alignment from GeneWise AATTTGCAAAGTCCCAAGACCTACCTTATCAGTCGCTGTCCATAGACACTTTTTCTTATTTGAATGATGAATATGTAGTCATTGCTCAGCCTTTTACTGGAAAATGCATTTTCCTGGAATGGGACCACGTAGAGAAGACCTTCCGGAATTATGACAACATTACAG gaggaggtagtattaacttatctttatcccactgatgtttttctttctagAATTCGCAAAGTCGCAAGACCTACCTTATCAATTACTGTCCATAGACACCTTTGCGTACTTGAATGATGTGTATGTTGTTATCGCACAGCCCTTTACTGGAAAATGCATCTTCCTGGAATGGGATCATGTAGAGAAAACCTTCTGGAACTATGACAATGTTACGGgtaagagtattgaaaagaaggacccaacaatatcaagcagagccccaaac #### Lipa_ID6935_8 --> 0 - 0 Original Alignment GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca Alignment from CESAR GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca Alignment from Spaln_aa2Genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca Alignment from Spaln_nt2Genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca Alignment from Pairagon GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca Alignment from Exonerate_protein2genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca Alignment from Exonerate_coding2genome GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca Alignment from GeneWise GTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTTTCATTACAACCAG taaatttcactgatgctaagcactctactgtttgtaaatgtttcttgtagGTTTTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGAAGCAGTGAAAAGAATTATTCTCATTACAACCAGgtaagtattttcaaaaatgctagcataaccaaagccaaattaggcttcca #### Lipa_ID6941_2 --> 0 - 1 Original Alignment ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAg ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGggtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag Alignment from CESAR ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAg ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGggtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag Alignment from Spaln_aa2Genome ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGGgtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag Alignment from Spaln_nt2Genome ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGGgtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag Alignment from Pairagon ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGGgtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag Alignment from Exonerate_protein2genome ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGGgtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag Alignment from Exonerate_coding2genome ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGGgtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag Alignment from GeneWise ACCGAGATAATCATGCGCTGGGGATATCCTGGTGAGGAACACTCGGTCCTGACAGGAGATGGCTATATTCTGAGTATTCACCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAAG ctatttttgtgaatgggcaacctagaatactgaatggcacttttttgcagACTGAGATAATCATGCGGTGGGGCTATCCAGGCGAGGAACACTCAGTTTTGACTGGAGATGGCTACCTTCTGAGTATCCATCGAATCCCTCGTGGGCGGAAGAACCATTTTGGCAAGGgtatgtttatttttatgcataaaaacccttgaaggtcactgcttatggag #### Lipf_ID6849_5 --> 2 - 0 Original Alignment gtTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccaggcTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga Alignment from CESAR gtTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccaggcTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga Alignment from Spaln_aa2Genome GTTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccagGCTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga Alignment from Spaln_nt2Genome GTTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccagGCTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga Alignment from Pairagon GTTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccagGCTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga Alignment from Exonerate_protein2genome GTTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccagGCTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga Alignment from Exonerate_coding2genome GTTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccagGCTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga Alignment from GeneWise GTTTTATTGCCTTTTCTACCAATCCTGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCATTAGCTCCAGTTGCTACTGTGAAGTATACAGAAAGTCCCTTTAAAAAGATTTCACTTATTCCTAAGTTTCTTCTCAAG ggtatgactgagagggtagattatagggactctgtcttttctttctccagGCTTTATTGCCTTTTCCACAAATCCAGCTCTGGCTAAAAAAATCAAGAGGTTTTATGCGTTAGCTCCAGTTGCCACTGTGAGGTATACAGAAAGTCCCTTCAGAAAGATTTCACTGATTCCTAAGTTCCTTCTCAAAgtgagtgattaagatccacaatgccatgagatgtcaattaatccactcga #### Lipk_ID6863_7 --> 0 - 0 Original Alignment AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca Alignment from CESAR AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca Alignment from Spaln_aa2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca Alignment from Spaln_nt2Genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca Alignment from Pairagon AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca Alignment from Exonerate_protein2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca Alignment from Exonerate_coding2genome AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca Alignment from GeneWise AGTCGCTTGGATGTTTATCTGTCACAGAGTCCTGCAGGAACATCTGTTCAGAACATGCTGCACTGGGCCCAG agtgtcgatctagtggagtggtcttgagtcttcctttccatgtggcgcagAGCTGCTTGGATGTTTATCTATCACAGAGTCCGGCAGGAATATCTGTTCCGAACATGCTTCACTGGGCCCAGgtgaggtcttctattcataatgctctccccctcttttcacctctcccgca #### Lipm_ID6882_2 --> 0 - 1 Original Alignment AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAg ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGggtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat Alignment from CESAR AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAg ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGggtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat Alignment from Spaln_aa2Genome AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGGgtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat Alignment from Spaln_nt2Genome AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGGgtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat Alignment from Pairagon AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGGgtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat Alignment from Exonerate_protein2genome AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGGgtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat Alignment from Exonerate_coding2genome AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGGgtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat Alignment from GeneWise AGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGGTACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAG ctattaggattatggccatgtaatttgtaaatctgctttattttctcaagAGTGAGATCATTAAACACAAGGGTTATCCCAGTGAGGAGTATGAGGTCCCTACAGGAGATGGGTATATCCTATCTGTAAACAGGATCCCCCGAGGTCAGACTCAGCTAAAGAAGGAGGgtaagccagactccctcaatcatcaacccctgttctgtgcagtgtaaaat #### Lipm_ID6883_3 --> 2 - 2 Original Alignment gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcaggaTCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCaggtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct Alignment from CESAR gaTCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCag ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcaggaTCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCaggtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct Alignment from Spaln_aa2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcagGATCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct Alignment from Spaln_nt2Genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcagGATCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct Alignment from Pairagon GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcagGATCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct Alignment from Exonerate_protein2genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcagGATCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct Alignment from Exonerate_coding2genome GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcagGATCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct Alignment from GeneWise GATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAGCACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAG ctaaagagtggacgaagaatggagaaaatgatccctctcctgccttgcagGATCCAGGCCTGTGGTGTTACTACAACATGGTCTTCTTGGGGATGCTAGCAACTGGGTTTCCAACCTGCCCAACAACAGCCTGGGTTTTATTTTGGCAGATGCGGGTTTTGACGTGTGGATGGGAAACAGTAGAGGAAACACCTGGTCTCAGAAGCACAAGACCCTCTCCATAGATCAAGATGATTTCTGGGCTTTCAGgtgagtgaaccagtctcagtgccgcaattatctctaatgcttgggactct #### Lipm_ID6884_4 --> 1 - 1 Original Alignment tTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGg gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagtTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGggttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga Alignment from CESAR tTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGg gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagtTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGggttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga Alignment from Spaln_aa2Genome TTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGG gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagTTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGGgttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga Alignment from Spaln_nt2Genome TTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGG gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagTTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGGgttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga Alignment from Pairagon TTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGG gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagTTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGGgttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga Alignment from Exonerate_protein2genome TTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGG gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagTTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGGgttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga Alignment from Exonerate_coding2genome TTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGG gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagTTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGGgttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga Alignment from GeneWise TTATGATGAAATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGG gtgcatattcagtttgttttattatcgtatgattttatttacttttgaagTTACGATGAAATGGCTAGGTTTGACCTACCAGCTGTGATAAACTATATCTTACAGAAAACAGGGCAGAAAAAGGTCTATTATATTGGCTACTCACAGGGAACCACCATGGgttgctcttcctgcaagagcactggaatcttcagtagcagacacctagga #### Lipm_ID6885_5 --> 2 - 0 Original Alignment gcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacaggcTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt Alignment from CESAR gcTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacaggcTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt Alignment from Spaln_aa2Genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt Alignment from Spaln_nt2Genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt Alignment from Pairagon GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt Alignment from Exonerate_protein2genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt Alignment from Exonerate_coding2genome GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt Alignment from GeneWise GCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAG aatttacacattgcatagtgaactatagcgtctttaaaaacatcccacagGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCGCATAAAATCAAAATGTATTTTGCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATATGATGATCAAGgtgcgggtgatacccaggttcatttataccagaccagatcctataagatt #### Lipn_ID6871_3 --> 2 - 2 Original Alignment gaCCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTag gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttaggaCCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTaggtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg Alignment from CESAR gaCCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTag gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttaggaCCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTaggtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg Alignment from Spaln_aa2Genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttagGACCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTAGgtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg Alignment from Spaln_nt2Genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttagGACCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTAGgtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg Alignment from Pairagon GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttagGACCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTAGgtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg Alignment from Exonerate_protein2genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttagGACCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTAGgtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg Alignment from Exonerate_coding2genome GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttagGACCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTAGgtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg Alignment from GeneWise GACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTGGATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTCTGGGCTTTTAG gtatgtgcatgtttctagaatttagattgtgctgtctctccttgccttagGACCCCGGCCTGTTGTATATATGCAACATGCCCTGTTTGCAGATAATGCCTATTGGCTTGAGAATTTTGCTAATGGGAGTCTAGAGTTCATACTGACTGATGCAGGTTATGATGTGTGGATGGAAAATAGTCGATCGAACACTTGGTCACAAAGACACAAAACACTCTCAGCAAATGAAGAGAAATTTTGGGCTTTTAGgtaatttgcataaaatttttgggaagttatgggatctaaattgcagcttg #### Lipn_ID6875_7 --> 0 - 0 Original Alignment AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa Alignment from CESAR AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa Alignment from Spaln_aa2Genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa Alignment from Spaln_nt2Genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa Alignment from Pairagon AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa Alignment from Exonerate_protein2genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa Alignment from Exonerate_coding2genome AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa Alignment from GeneWise AGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAG ttccttgaatgactgatgcttaggattctagctgtctgtctcctttccagAGTCGTCTGGATGTGTACATGGCCCATGCTCCCATGGGATCATCAATACAGAATATGCTGCACAACAAGCAGgtatgcaagtttcaacacaactccttaatagctgtaaaaagggtgcctaa #### Lipo1_ID6826_7 --> 0 - 0 Original Alignment AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag Alignment from CESAR AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag Alignment from Spaln_aa2Genome AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag Alignment from Spaln_nt2Genome AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag Alignment from Pairagon AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag Alignment from Exonerate_protein2genome AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag Alignment from Exonerate_coding2genome AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag Alignment from GeneWise AGCCGCCTTGATGTGTATGTAAAGCTCAATCTAGCAGGAACATCAGTAAAAGTTCTTATACATTATAATCAG tatggaaggggagttctgacatacatagtaaaagaagtttgccattacagAGCCGTCTTAAAGTGTATGTTAAGCTCAATCTAGCTGGAACATCAGTAAAAGTTCTTATCCATTATAATCAGgtatttcattcttaccgttttgtctacacctagcccttctgtcttcaaag #### Lipo1_ID6830_3 --> 2 - 2 Original Alignment ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTaggtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag Alignment from CESAR ccCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTag agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagccCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTaggtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag Alignment from Spaln_aa2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTAGgtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag Alignment from Spaln_nt2Genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACACG---TGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTAGgtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag Alignment from Pairagon CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTAGgtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag Alignment from Exonerate_protein2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTAGgtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag Alignment from Exonerate_coding2genome CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTAGgtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag Alignment from GeneWise CCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCAGAGGAAGTACCTGGGCAAAGAAACAC---GTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAG agtaatggcatactatatgtatgagtgctggaatcctctgtctcctgcagCCCCAAAGATGATAGTATTCTGTCAGCATGGCTTACTTGCTACACCAGGTGCATGGGTTTCCAATCCACCTATTAACAGCCTGGCTTTCATCCTAGCAGATGCTGGGTATGATGTGTGGATGGGAAGCAGCCGAGGAAGTACCTGGGCAAAAAAACATGAAGTCGCACTCAATCCAGATTCTAAAGAGTTTTGGGATTTTAGgtgagcaatctctccccttttagtttcagtttaacatttttgtctagaag #### Loxl4_ID8561_12 --> 2 - 0 Original Alignment gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagggGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GGTCCAGGGGACTACATCTTCCAGgtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc Alignment from CESAR gaGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagggGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GGTCCAGGGGACTACATCTTCCAGgtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc Alignment from Spaln_aa2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGAT- ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagGGGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAGGgtccaggggactacatcttccaggtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc Alignment from Spaln_nt2Genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagGGGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGA---GGGTCCAGGGGACTACATCTTCCAGgtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc Alignment from Pairagon GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagGGGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGA---GGGTCCAGGGGACTACATCTTCCAGgtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc Alignment from Exonerate_protein2genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagGGGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GGTCCAGGGGACTACATCTTCCAGgtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc Alignment from Exonerate_coding2genome GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagGGGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GGTCCAGGGGACTACATCTTCCAGgtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc Alignment from GeneWise GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG ggcatatccgcctctgcgacaccgttgttctggttctgtttccttcatagGGGTACAGCGTCGCTATGCATGTGCTAACTTTGGAGAACAAGGGGTTGCTGTAGGCTGCTGGGACACCTACCGGCATGACAGTGATTGTCAGTGGGTGGATATCAAAGAG---GGTCCAGGGGACTACATCTTCCAGgtaaacatcactccaggagatatgctccaggtattactgtaaggcagttc #### Loxl4_ID8565_10 --> 2 - 2 Original Alignment gtGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACag ccattgactttctacactctggaccctcccccttctgtctcccatggcaggtGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACcggtagctccagatcagacatggccctggctctaaagtgtaaagtaggttta Alignment from CESAR gtGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACag ccattgactttctacactctggaccctcccccttctgtctcccatggcaggtGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACcggtagctccagatcagacatggccctggctctaaagtgtaaagtaggttta Alignment from Spaln_aa2Genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG ccattgactttctacactctggaccctcccccttctgtctcccatggcagGTGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACCGgtagctccagatcagacatggccctggctctaaagtgtaaagtaggttta Alignment from Spaln_nt2Genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG ccattgactttctacactctggaccctcccccttctgtctcccatggcagGTGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACCGgtagctccagatcagacatggccctggctctaaagtgtaaagtaggttta Alignment from Pairagon GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG ccattgactttctacactctggaccctcccccttctgtctcccatggcagGTGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACCGgtagctccagatcagacatggccctggctctaaagtgtaaagtaggttta Alignment from Exonerate_protein2genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAGGCACTACCAC ccattgactttctacactctggaccctcccccttctgtctcccatggcagGTGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACCGGTAGCTCCAGatcagacatggccctggctctaaagtgtaaagtaggttta Alignment from Exonerate_coding2genome GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAGGCACTACCAC ccattgactttctacactctggaccctcccccttctgtctcccatggcagGTGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACCGGTAGCTCCAGatcagacatggccctggctctaaagtgtaaagtaggttta Alignment from GeneWise GTGCTCCAGACCTCGTGATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCTCACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGCGCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAG ccattgactttctacactctggaccctcccccttctgtctcccatggcagGTGCACCTGACCTTGTTATGAATGCCCAACTGGTACAAGAAACAGAGTACTTGGAGGACCGTCCACTCAGCATGCTGTACTGTGCCCATGAGGAAAACTGCCTTTCCAAGTCTGCTGATCACATGGACTGGCCTTATGGGTACCAGGGCTTGCTGCGCTTCTCTTCACAAATTTACAACCTTGGCCAAGCTGACTTCCGTCCCAAGGCTGGACGCCACAGTTGGATATGGCACCAATGCCACCGgtagctccagatcagacatggccctggctctaaagtgtaaagtaggttta #### Loxl4_ID8566_9 --> 0 - 1 Original Alignment GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACa tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATagtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga Alignment from CESAR GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACa tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATagtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga Alignment from Spaln_aa2Genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATAgtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga Alignment from Spaln_nt2Genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATAgtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga Alignment from Pairagon GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATAgtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga Alignment from Exonerate_protein2genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATAgtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga Alignment from Exonerate_coding2genome GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATAgtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga Alignment from GeneWise GACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAAGTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCGTGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACA tgtaacaatcgtactatgctacctgatgctccttccttgtgcttcaccagGACACTTGGTACTGGCATGGCACACCAGAGGCAAAAGAAGTAGTGATGAGTGATGTCAGCTGTGCAGGGATAGAAATGGCTCTGCAGCAGTGTCAAAGACGTGGGCCTGTGCATTGTTCTCATGGCCCTGGACACTTCTCAGCTGGCATTGCCTGTATGAATAgtaagtgtttggtaaagtggtcggattggttgaggagctcagacaggaga #### Loxl4_ID8571_4 --> 1 - 2 Original Alignment aAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTag ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagaAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAaggtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc Alignment from CESAR aAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTag ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagaAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAaggtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc Alignment from Spaln_aa2Genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagAAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAAGgtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc Alignment from Spaln_nt2Genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagAAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAAGgtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc Alignment from Pairagon AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagAAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAAGgtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc Alignment from Exonerate_protein2genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagAAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAAGgtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc Alignment from Exonerate_coding2genome AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagAAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAAGgtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc Alignment from GeneWise AAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCTAG ggaatgtttttgcaccctgtgactgaccccttgaacttattcccttctagAAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGTCAAGgtaaccagggttagtagccaatggggtcctgcgtgtcataaatccctgcc #### Loxl4_ID8574_2 --> 2 - 0 Original Alignment gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagggCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCG---CGACCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag Alignment from CESAR gtCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagggCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCG---CGACCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag Alignment from Spaln_aa2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagGGCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCG---CGACCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag Alignment from Spaln_nt2Genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagGGCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCGC---GACCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag Alignment from Pairagon GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagGGCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCGC---GACCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag Alignment from Exonerate_protein2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagGGCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCG---CGACCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag Alignment from Exonerate_coding2genome GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagGGCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCG---CGACCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag Alignment from GeneWise GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGGCTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGATATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAG gagcaatgaagacatggtctgtttgggaatgttcaacggttgtcacacagGGCCCATCTGGCTTGACAATGTTCGTTTTTTAGGCACTGAGAAGACACAAGATCAGTGTGGCTCTAACAGCTGGGGTGTCAGTGACTGTAGACACTCAGAAGATGTTGGGGTGGTGAGTCACTCACAGTGCCAGCATGCATATCACTCTGAGAAGGTGTCCAATGCGCGA---CCTCAGgtaggccagttgtctagatactgtcttgagccaaaagctggacagaccag #### Lpxn_ID3471_4 --> 1 - 0 Original Alignment tGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagtGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat Alignment from CESAR tGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagtGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat Alignment from Spaln_aa2Genome TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat Alignment from Spaln_nt2Genome TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat Alignment from Pairagon TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat Alignment from Exonerate_protein2genome TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat Alignment from Exonerate_coding2genome TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat Alignment from GeneWise TGAGGTCCAAGAGCCAAAGGAATCAGTCCTGCCTCCCAAAACCTCAGCAGCTGCTCAGTTGGATGAGCTCATGGCCCACCTGAGTGAAATGCAGGCCAAG tttaaattgcatctggtggtatgttgtactttttccttctccctttccagTGAGGTCCAAAAGCCAAAGGAATCAGTCCTGCCTCCCAAAAGCTCAGCCGCTGCTCAATTGGATGAGCTCATGGCCCACCTAAGCGAGATGCAGGCTAAGgtacagtgactcttacctgatataatccttaactccagttcagtattcat #### Lrp5_ID102_22 --> 0 - 2 Original Alignment ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACag agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagATCCTAAACCCACCACCATCCCCAGCCACAGACCCAACTCTTTATAATGTGGATGTATTTTATTCCTCAGGCATCCCAGCCACTGCTAGACCATATaggtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc Alignment from CESAR ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACag agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagATCCTAAACCCACCACCATCCCCAGCCACAGACCCAACTCTTTATAATGTGGATGTATTTTATTCCTCAGGCATCCCAGCCACTGCTAGACCATATaggtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc Alignment from Spaln_aa2Genome ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagATCCTAAACCCACCACCATCCCCAGCCACAGACCCAACTCTTTATAATGTGGATGTATTTTATTCCTCAGGCATCCCAGCCACTGCTAGACCATATAGgtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc Alignment from Spaln_nt2Genome ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagATCCTAAACCCACCACCATCCCCAGCCACAGACCCAACTCTTTATAATGTGGATGTATTTTATTCCTCAGGCATCCCAGCCACTGCTAGACCATATAGgtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc Alignment from Pairagon ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagATCCTAAACCCACCACCATCCCCAGCCACAGACCCAACTCTTTATAATGTGGATGTATTTTATTCCTCAGGCATCCCAGCCACTGCTAGACCATATAGgtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc Alignment from Exonerate_protein2genome ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagATCCTAAACCCACCACCATCCCCAGCCACAGACCCAACTCTTTATAATGTGGATGTATTTTATTCCTCAGGCATCCCAGCCACTGCTAGACCATATAGgtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc Alignment from Exonerate_coding2genome agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagatcctaaacccaccaccatccccagccacagacccaactctttataatgtggatgtattttattcctcaggcatcccagccactgctagaccatataggtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc Alignment from GeneWise ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG agaagtgatttcttttgcttgcatgatctctttccccccacatgccccagATCCTAAACCCACCACCATCCCCAGCCACAGACCCAACTCTTTATAATGTGGATGTATTTTATTCCTCAGGCATCCCAGCCACTGCTAGACCATATAGgtgaggcaatgtgctcatctgcttgtcctgaatactgttgggaaggagcc #### Lrp5_ID106_18 --> 2 - 1 Original Alignment agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagagCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATggtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat Alignment from CESAR agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagagCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATggtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat Alignment from Spaln_aa2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat Alignment from Spaln_nt2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCC------TGCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat Alignment from Pairagon AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCC------TGCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGT---------------------TGGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat Alignment from Exonerate_protein2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGG acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTTGgtgaggcagactgccaggaccgctctgatgatgctaactgtgatggtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat Alignment from Exonerate_coding2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGG acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTTGgtgaggcagactgccaggaccgctctgatgatgctaactgtgatggtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat Alignment from GeneWise AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttggaagtttctgatttcttcttagAGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCTTCTCAGTTCCCTTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCTAACTGTGATGgtgagcccctacctgatcagcacagtcctccaggtcccattggtagccat #### Lrp5_ID107_17 --> 2 - 1 Original Alignment caGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTg attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagcaGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTggtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa Alignment from CESAR caGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTg attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagcaGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTggtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa Alignment from Spaln_aa2Genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagCAGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTGgtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa Alignment from Spaln_nt2Genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagCAGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTGgtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa Alignment from Pairagon CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagCAGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTGgtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa Alignment from Exonerate_protein2genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagCAGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTGgtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa Alignment from Exonerate_coding2genome CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagCAGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTGgtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa Alignment from GeneWise CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCACATCTGTATCGCCAAGGGTGATGGAACACCGCGCTGCTCGTGCCCTGTCCACCTGGTGCTCCTGCAGAACCTGCTGACTTGTGGTG attatcactgacataatgcctagcctgctgggtgacttctgtctttgcagCAGCCCATCCTTGTGCACATGACAATGGTGGCTGCTCCCATATTTGTATTGCTAAGGGTGATGGGACACCACACTGCTCGTGCCCTGTACATTTGGTGCTCCTGCAGAATCTGTTGGCTTGTGGTGgtaggtgataaccttggaatcccatgcaaaagtctgcatcccagccttaa #### Lrp5_ID110_14 --> 0 - 2 Original Alignment CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgggtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc Alignment from CESAR CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgg actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAgggtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc Alignment from Spaln_aa2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc Alignment from Spaln_nt2Genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc Alignment from Pairagon CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc Alignment from Exonerate_protein2genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc Alignment from Exonerate_coding2genome CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc Alignment from GeneWise CCCTCCATGCTGACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACACGACCTCAGCATTGACATCTACAGCCGGACACTGTTCTGGACCTGTGAGGCCACCAACACTATCAATGTCCACCGGCTGGATGGGGATGCCATGGGAGTGGTGCTTCGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGG actatcaggcaatggctcagtggtgctattaacttctatgctctcccaagCCCTCCATGCTAACCTCTCCCAGCCAAAGCCTGAGCCCAGACAGACAGCCACATGACCTCAGCATTGACATCTACAGCCGGACATTGTTCTGGACCTGTGAGGCCACCAACACCATCAATGTCCACCGGCTGGATGGGGATGCCATGGGGGTGGTGCTAAGAGGGGACCGTGACAAGCCAAGGGCCATTGCTGTCAATGCTGAGCGAGGgtgagtaactcttgggagagatgtgtgaaacatgtacctatattgctcgc #### Lrp5_ID114_10 --> 0 - 2 Original Alignment ACGATC------------AGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACC---------------------------------------------------AACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCT------ACTAAAgg gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagACAATTACCCATGCCTTCAGCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCCA---GGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGGTCAAGGAGACCACCTAGCAGGAGGTTGGAGTTACTCGTATGTCAACAGGATTGAGGTAGCCAGACCAGATGGGCAG---------------------------------------AGATCACTAGCTCTCGATCCAACTAAAGCTAAAgggtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag Alignment from CESAR ACGATC------------AGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACC---------------------------------------------------AACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACTAAA------gg gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagACAATTACCCATGCCTTCAGCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCCA---GGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGGTCAAGGAGACCACCTAGCAGGAGGTTGGAGTTACTCGTATGTCAACAGGATTGAGGTAGCCAGACCAGATGGGCAG---------------------------------------AGATCACTAGCTCTCGATCCAACTAAAGCTAAAgggtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag Alignment from Spaln_aa2Genome CCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA------------GACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACT------AAAGG gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagacaattacccatgccttcagCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCCA---GGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGGTCAAGGAGACCACCTAGCAGGAGGTTGGAGTTACTCGTATGTCAACAGGATTGAGGTAGCCAGACCAGATGGGCAGAGATCACTAGCTCTCGATCCAACTAAAGCTAAAGGgtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag Alignment from Spaln_nt2Genome CCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACA--G GATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAG gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagacaattacccatgccttcagCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCC---AGGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGgtcaaggagaccacctagcaggaggttggagttactcgtatgtcaacagGATTGAGGTAGCCAGACCAGATGGGCAGAGATCACTAgctctcgatccaactaaagctaaagggtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag Alignment from Pairagon ACGA------------TCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGAC---------------------------------------------------CAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGAGACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTA------CTAAAGG gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagACAATTACCCATGCCTTCAGCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCC---AGGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGGTCAAGGAGACCACCTAGCAGGAGGTTGGAGTTACTCGTATGTCAACAGGATTGAGGTAGCCAGACCAGATGGGCAG---------------------------------------AGATCACTAGCTCTCGATCCAACTAAAGCTAAAGGgtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag Alignment from Exonerate_protein2genome ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA---GACCTTGACAACCCC---------AGGTCTCTGGCTCTGGATCCTACTAAAGG gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagacaattacccatGCCTTCAGCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCCA---GGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGGTCAAGGAGACCACCTAGCAGGAGGTTGGAGTTACTCGTATGTCAACAGGATTGAGGTAGCCAGACCAGATGGGCAGAGATCACTAGCTCTCGATCCAACTAAAGCtaaagggtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag Alignment from Exonerate_coding2genome ACGATCAGCCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA---GACCTTGACAACCCC---------AGGTCTCTGGCTCTGGATCCTACTAAAGG gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagacaattacccatGCCTTCAGCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCCA---GGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGGTCAAGGAGACCACCTAGCAGGAGGTTGGAGTTACTCGTATGTCAACAGGATTGAGGTAGCCAGACCAGATGGGCAGAGATCACTAGCTCTCGATCCAACTAAAGCtaaagggtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag Alignment from GeneWise CCGAGCCTTCATGAATGGGAGCTCAGTGGAGCACGTGATTGAGTTTGGCCTCGACTACCCTGAAGGAATGGCTGTGGACTGGATGGGCAAGAACCTCTATTGGGCGGACACAGGGACCAACAGGATTGAGGTGGCCCGGCTGGATGGGCAGTTCCGGCAGGTGCTTGTGTGGAGA------------GACCTTGACAACCCCAGGTCTCTGGCTCTGGATCCTACTAAA------GG gggcttgacaattgctcacagagctctttgttcctttacgctgtctctagacaattacccatgccttcagCCATGCCTTCATGAATGGGAGCTCAGTGGAGCATGTGAGTGAGTTTGGCCTTGATTACCCA---GGAATGTCT---GATTGGATGGGCAAGAACCTCTATTGGGCAGACACAGAGACTGTGGATGGTCAAGGAGACCACCTAGCAGGAGGTTGGAGTTACTCGTATGTCAACAGGATTGAGGTAGCCAGACCAGATGGGCAGAGATCACTAGCTCTCGATCCAACTAAAGCTAAAGGgtaatggctctttgcctgttttatgatgcttgcccctcctgtttccatag #### Lrp5_ID117_7 --> 1 - 0 Original Alignment cCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagcTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga Alignment from CESAR cCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagcTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga Alignment from Spaln_aa2Genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga Alignment from Spaln_nt2Genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga Alignment from Pairagon CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga Alignment from Exonerate_protein2genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga Alignment from Exonerate_coding2genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga Alignment from GeneWise CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcccgcactgggtactttccgtttcacttatttatctaatagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGAGACCGGCATGTCTTAGTGAACACTTCCCTTGGGTGGCCCAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATAGAGgtgagcggggcatcagcacaaacatgtgaggaacatagcaacatcatcga #### Lrp5_ID121_5 --> 2 - 1 Original Alignment tcCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAg tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagtcCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAggtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg Alignment from CESAR tcCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAg tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagtcCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAggtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg Alignment from Spaln_aa2Genome TCCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAG tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagTCCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAGgtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg Alignment from Spaln_nt2Genome TCCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAG tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagTCCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAGgtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg Alignment from Pairagon TCCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAG tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagTCCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAGgtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg Alignment from Exonerate_protein2genome TCCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAG tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagTCCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAGgtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg Alignment from Exonerate_coding2genome TCCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAG tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagTCCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAGgtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg Alignment from GeneWise TCCACACACCATGCGAGGAGGACAACGGTGGCTGTTCCCACCTGTGCCTGCTGTCCCCGAGGGAGCCTTTCTACTCCTGTGCCTGCCCCACTGGTGTGCAGTTGCAGGACAATGGCAAGACGTGCAAGACAG tgtcctatcgaatacatgggcaatgacctcatgaattcatcttcttctagTCCACACACCATGTAAGGAGGATAACAGTGACTGCTCTCATCTATGTCTTCTTTCTCCAAGGGAGCCTTTCTACTCTTGTGCATGCCCTACTGGGGTACAGTTGCAGGATAATGGCAAAACATGCAAGACAGgtaatgtcgaacattggcaccagtagggacaggtaagacctgggtgtatg #### Lrp5_ID123_3 --> 1 - 2 Original Alignment gTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCcg aattattattcctccctctgaatgtttcactatatgttctaaattgtcaggTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTcggtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg Alignment from CESAR gTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCcg aattattattcctccctctgaatgtttcactatatgttctaaattgtcaggTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTcggtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg Alignment from Spaln_aa2Genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG aattattattcctccctctgaatgtttcactatatgttctaaattgtcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg Alignment from Spaln_nt2Genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG aattattattcctccctctgaatgtttcactatatgttctaaattgtcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg Alignment from Pairagon GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG aattattattcctccctctgaatgtttcactatatgttctaaattgtcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg Alignment from Exonerate_protein2genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG aattattattcctccctctgaatgtttcactatatgttctaaattgtcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg Alignment from Exonerate_coding2genome GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG aattattattcctccctctgaatgtttcactatatgttctaaattgtcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg Alignment from GeneWise GTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATCGAGCGGGCAGGGATGGATGGCAGTACCCGGAAGATCATTGTAGACTCCGACATTTACTGGCCCAATGGGCTGACCATCGACCTGGAGGAACAGAAGCTGTACTGGGCCGATGCCAAGCTCAGCTTCATCCACCGTGCCAACCTGGACGGCTCCTTCCG aattattattcctccctctgaatgtttcactatatgttctaaattgtcagGTACATGTACTGGACTGACTGGGGGGAAGCACCCCGGATTAAGCGGGCAGGGATGGATGGCAGTACACGGAAAATCATTGTAGATTATGATATTTACTGGCCCAATGGGGTGACCATCGACCTTGAGGAGCAGAAACTGTATTGGGCTGATGCCCAGCTCAGCTTCATCCACCGTGCTAAACTTGATGGCTCCTTTCGgtgagcgtctggtggatggggtgccctccccacttgactgtccaaacatg #### Lrp5_ID124_2 --> 2 - 2 Original Alignment ccTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATgg gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagccTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATgggtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa Alignment from CESAR ccTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATgg gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagccTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATgggtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa Alignment from Spaln_aa2Genome CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagCCTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATGGgtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa Alignment from Spaln_nt2Genome CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagCCTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATGGgtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa Alignment from Pairagon CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagCCTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATGGgtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa Alignment from Exonerate_protein2genome CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagCCTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATGGgtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa Alignment from Exonerate_coding2genome CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagCCTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATGGgtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa Alignment from GeneWise CCTCACCGCTCCTGTTGTTTGCCAACCGCCGGGATGTGCGGCTAGTGGATGCCGGCGGAGTGAAGCTGGAGTCCACCATTGTGGCCAGTGGCCTGGAGGATGCAGCTGCTGTAGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTGAGCGAGGAGGCCATCAAACAGACCTACCTGAACCAGACTGGAGCTGCTGCACAGAACATTGTCATCTCGGGCCTCGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTACTGGACGGACTCCGAGACCAACCGCATTGAGGTTGCCAACCTCAATGGGACGTCCCGTAAGGTTCTCTTCTGGCAGGACCTGGACCAGCCAAGGGCCATTGCCCTGGATCCTGCACATGG gatctgatttctgtcttgaaagcaatccagagctgtgttctttaccatagCCTCACCAATTCTGTTGTTTGCCAACCGCCGGGACGTGCGGCTAGTGGATGCTGGCGGAGTGAAGTTGGAGTCCACCATTGTGGCCAGTGGCTTGGAGGATGCAGCTGCTGTTGACTTCCAGTTCTCCAAGGGTGCTGTGTACTGGACAGATGTAAGTGAGGAGGCCATCAAACAGACCTACCTGAACCAAACTGGAGCTGCTGCACAAAACATTGTCATTTCAGGCCTTGTGTCACCTGATGGCCTGGCCTGTGACTGGGTTGGCAAGAAGCTGTATTGGACAGAGTCTCAGACAAACCATATTGAGGTTGCCAACCTCAATGGGACGTCCCATAAGGTTCTCTTCTGGCAGGACCTTGACCAGCCAAGGGCCATTGCCTTAGATCCTGCACATGGgtgcagcgtggacattctcctccagtctgatggagacgcatgggggacaa #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagatATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAggtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagatATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAggtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccaagtcatgtcctcaactgtggcctcttccctctgttttagATATAAATGAATGTGTGATGCCTGGGATGTGTCGTCACGGCGACTGTCTGACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTCCGCAAACAGTGTATAGgtaaggtcgggaacaattttggattagccaaaggggagcaaaaggggaga #### Ltbp3_ID1264_16 --> 2 - 1 Original Alignment atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagacATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAggtaagccactgcaaagctgttccatatacccagggatttgcagaggatac Alignment from CESAR atGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAg acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagacATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAggtaagccactgcaaagctgttccatatacccagggatttgcagaggatac Alignment from Spaln_aa2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagACATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtaagccactgcaaagctgttccatatacccagggatttgcagaggatac Alignment from Spaln_nt2Genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagACATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtaagccactgcaaagctgttccatatacccagggatttgcagaggatac Alignment from Pairagon ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagACATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtaagccactgcaaagctgttccatatacccagggatttgcagaggatac Alignment from Exonerate_protein2genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagACATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtaagccactgcaaagctgttccatatacccagggatttgcagaggatac Alignment from Exonerate_coding2genome ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagACATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtaagccactgcaaagctgttccatatacccagggatttgcagaggatac Alignment from GeneWise ATGTCAACGAATGCTCCGAGGGTACCCCCTGCTCTCCTGGATGGTGTGAGAACCTTCCGGGTTCTTACCGTTGCACGTGTGCCCAGGGATACGAACCCGCACAGGACGGCCTCAGTTGCATAG acggatagataaatttgaaaggtgactatgtttgttgttgtttttttcagACATCAATGAATGCCCTGAGGGTACACCTTGCTGTCCTGAATGGTGTGAGAACCTTCCAGGTTCCTACTGTTGCACATCTGCCCATGGATATGAACCTGCACAGGATTGTCTTAGCTGCATAGgtaagccactgcaaagctgttccatatacccagggatttgcagaggatac #### Ltbp3_ID1265_17 --> 2 - 1 Original Alignment acGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGg ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagatGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGggtgagccttgcagctgacataagtctattgtagttaagggaagttagact Alignment from CESAR acGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGg ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagatGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGggtgagccttgcagctgacataagtctattgtagttaagggaagttagact Alignment from Spaln_aa2Genome ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtgagccttgcagctgacataagtctattgtagttaagggaagttagact Alignment from Spaln_nt2Genome ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtgagccttgcagctgacataagtctattgtagttaagggaagttagact Alignment from Pairagon ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtgagccttgcagctgacataagtctattgtagttaagggaagttagact Alignment from Exonerate_protein2genome ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtgagccttgcagctgacataagtctattgtagttaagggaagttagact Alignment from Exonerate_coding2genome ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtgagccttgcagctgacataagtctattgtagttaagggaagttagact Alignment from GeneWise ACGTGGATGAGTGTGAGGCTGGGAAAGTGTGCCAAGATGGCATCTGCACGAACACACCAGGCTCTTTCCAGTGTCAGTGCCTCTCCGGCTATCATCTGTCAAGGGATCGGAGCCGCTGTGAGG ctatacacttatcacttaattagagttgtctgtctcctccctctctgcagATGTGGATGAGTGTGAAGCTGGGATAGTGTGCCAGGATGGTATCTGCACAAACACACCAGGTTCTTTCCAGTGCCAATGTCTCTCTGGCTATCATCTATCAAGGGATCGAAGCCGATGTGAGGgtgagccttgcagctgacataagtctattgtagttaagggaagttagact #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgcgaacttttatttatttttcctttgcagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAggtgagctagactatagtgctacccaaggaacagctgaacgaaacatcaca Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgcgaacttttatttatttttcctttgcagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAggtgagctagactatagtgctacccaaggaacagctgaacttttttttttt Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacgaaacatcaca Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacgaaacatcaca Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacgaaacatcaca Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacgaaacatcaca Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacgaaacatcaca Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacgaaacatcaca #### Ltbp3_ID1271_23 --> 2 - 1 Original Alignment acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagatTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGggtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga Alignment from CESAR acGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagatTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGggtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga Alignment from Spaln_aa2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGGgtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga Alignment from Spaln_nt2Genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGGgtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga Alignment from Pairagon ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGGgtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga Alignment from Exonerate_protein2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGGgtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga Alignment from Exonerate_coding2genome ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGGgtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga Alignment from GeneWise ACGTGGATGAGTGCTTGGATGAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG tatagtgctacccaaggaacagctgaactttttttttttaaaccctatagATTTAGATGAGTGCTTAGATGAGTCTAACTGCAGAAATGGTGTGTTTGAGAACACACATGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTATAGTTCAGCACAACACCAATGTCTGAGCCCTGAGGAGATGGgtaggtgctagaaaaacagtttggtaaggcaggaactgccaaggggtgga #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTggtatgtatttattgaaggatgatgttggcatcccctcccctcagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTggtatgtatttattgaaggatgaggatttatatttcattttatagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatgttggcatcccctcccctcagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatgttggcatcccctcccctcagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatgttggcatcccctcccctcagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatgttggcatcccctcccctcagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatgttggcatcccctcccctcagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC ttagcagcatattgctctggtctctctacttggattcttatctcctgtagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCAAGGAGAAGATGGTATGTGTATGGGGCCCCTAGTGGGACCTGCCCTCACTTTTGATGACTGTTGTTGCCGCCAAGGCCGTGGCTGGGGGACTCAGTGCAGACCATGCCCCCCACGCGGTACTGgtatgtatttattgaaggatgatgttggcatcccctcccctcagGGTCCC #### Macrod1_ID2045_4 --> 2 - 1 Original Alignment ccAACAGCTCCCTGCTTGGAGGCGGAGGGg aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagccAACAGCACCCTACTTGGAAGTGGCGGGggtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga Alignment from CESAR ccAACAGCTCCCTGCTTGGAGGCGGAGGGg aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagccAACAGCACCCTACTTGGAAGTGGCGGGggtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga Alignment from Spaln_aa2Genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagCCAACAGCACCCTACTTGGAAGTGGCGGGGgtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga Alignment from Spaln_nt2Genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagCCAACAGCACCCTACTTGGAAGTGGCGGGGgtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga Alignment from Pairagon CCAACAGCTCCCTGCTTGGAGGCGGAGGGG aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagCCAACAGCACCCTACTTGGAAGTGGCGGGGgtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga Alignment from Exonerate_protein2genome CCAACAGCTCCCTGCTTGGAGGCGGAGGGG aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagCCAACAGCACCCTACTTGGAAGTGGCGGGGgtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga Alignment from Exonerate_coding2genome aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagccaacagcaccctacttggaagtggcgggggtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga Alignment from GeneWise aggtgcccttctcgcctgttttcatctcagcaggcgcctctctcttgcagccaacagcaccctacttggaagtggcgggggtagggaccagccaatcctgagccagctggaagggccaagtgggggtaga #### Mamdc2_ID5144_9 --> 2 - 0 Original Alignment ggCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAAAAC---CATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagggCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg Alignment from CESAR ggCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagggCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg Alignment from Spaln_aa2Genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagGGCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg Alignment from Spaln_nt2Genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTT---GAAGAAAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagGGCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg Alignment from Pairagon GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAG---AAAACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagGGCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg Alignment from Exonerate_protein2genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagGGCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg Alignment from Exonerate_coding2genome GGCACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAA---AACCATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagGGCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg Alignment from GeneWise --CACTACCTGCTGGCCAACACTAAGTTTACATCCCAGCCTGGCTACATCGGAAGACTTTATGGTCCCTCTCTCCCTGGAAACATGCAGTACTGTGTGCGCTTTCATTACGCCATCTTTGGGTTTTTGAAAATGAGTGACACCCTAGCCGTTTATATCTTTGAAGAAAAC---CATGTGGTTCAAGAGAAGATCTGGTCTGTGCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCGGAAATCAGTTTCAAGAAGCCTATGCCCACAAAG ggattccttcagtccacaacacagcatgtcctaatcttttttcattgaagGGCACTACCTGCTGGCCAATACTAAGTTTACATCTCAGCCAGGTTATATAGGAAGACTCCATGGACCCCCTCTGCCTGGCAACATGCAGTACTGTGTGCATTTCTATTATGCCATATTTGGATTTCTAAAGATGAGCGATACCCTAGCAGTCTATATCTTTGAAGACAACAACCATGTGGTTCAAGAGGAGATTTGGTCTGTTCTCGAGTCCCCGAGGGGTGTTTGGATGCAAGCAGAAATC---TTTAAAAAGCCTATGCCCACAAAAgtgaggtagagaccaatggaggggcagtcattggtgttaaacactggatg #### Mamdc2_ID5151_4 --> 0 - 1 Original Alignment ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTg cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTggtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg Alignment from CESAR ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTg cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTggtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg Alignment from Spaln_aa2Genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg Alignment from Spaln_nt2Genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg Alignment from Pairagon ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg Alignment from Exonerate_protein2genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg Alignment from Exonerate_coding2genome ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg Alignment from GeneWise ATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTG cataggtagggagcacagtgttttgattatttttatttttctctcttcagATTTTGATAGAAGGTGTCCTGGGACAAGGAAACACGGCTAGCATTGCCCTCTTTGAAATCAAGATGACAGCCGGCTACTGTATTGgtaagtattagtagtgacttagatgcaaaatcaaagcatcaaatcgcatg #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGggtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGg gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGggtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Pairagon GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Exonerate_coding2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from GeneWise GGTGCCAACCTTCTGCTCACTCTGCAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagtgCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa Alignment from CESAR ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagtgCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagTGCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagTGCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa Alignment from Pairagon TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagTGCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagTGCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagTGCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gcagggatgctgtgaggctggtcccacctcaacccttgtgtttttttcagTGCACAATCCCTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTACTTTTGGAATGGTATGAGCCTCTGCAGAAATTTCTGCTGCTTAAGgtaaaggactggaggaccattaagggggtggggacccaacagactgagaa #### Map4k2_ID1648_27 --> 0 - 1 Original Alignment AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTg atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTggtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg Alignment from CESAR AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTg atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTggtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg Alignment from Spaln_aa2Genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTGgtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg Alignment from Spaln_nt2Genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTGgtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg Alignment from Pairagon AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTGgtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg Alignment from Exonerate_protein2genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTGgtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg Alignment from Exonerate_coding2genome AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTGgtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg Alignment from GeneWise AACTTTTCCAGTCCCTTGCCCAGCCCAGCGGGGATGCTGGAGCCGCTGGTGCTAGATGGGAAGGAGCTGCCACAGGTGTGTGTGGGCGCCGAGGGACCCGAGGGACCCGGCTGTCGAGTCCTGTTCCATGTCTTGCCCCTGGAAGCTGGCCTGACTCCAGACATCCTCATCCCTCCTG atttggcatgggtctacagcaggcgttctttttccacctttccctggcagAACTTTTCTAGTCCCTTGCCAAGCCCAGCAGGGATGCTGGAACCTTTGGTGCTAGATGGAAAGGAACTGCCCCAGGTTTGTGTTGGCACTGAGGGACCTAATAGACCTGGCTGTCGAGTACTGTTCCATGTTTTGCCCCTGGAAGCTGGCCTGACTCCAGATATCCTGATCCCTCCTGgtaagatccagcacctcaggaggcaatgcttgtagaggtctggggaaagg #### March5_ID7300_2 --> 1 - 1 Original Alignment aAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGg ctggcaggaaacttggacccttcaaatataactttactgtttaactttagaAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAggtacaatcccatctggaatgcactcttagcaaactcctagataactgctg Alignment from CESAR aAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGg ctggcaggaaacttggacccttcaaatataactttactgtttaactttagaAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAggtacaatcccatctggaatgcactcttagcaaactcctagataactgctg Alignment from Spaln_aa2Genome AAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaacttggacccttcaaatataactttactgtttaactttagAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAGgtacaatcccatctggaatgcactcttagcaaactcctagataactgctg Alignment from Spaln_nt2Genome AAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaacttggacccttcaaatataactttactgtttaactttagAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAGgtacaatcccatctggaatgcactcttagcaaactcctagataactgctg Alignment from Pairagon AAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaacttggacccttcaaatataactttactgtttaactttagAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAGgtacaatcccatctggaatgcactcttagcaaactcctagataactgctg Alignment from Exonerate_protein2genome AGAAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaacttggacccttcaaatataactttactgtttaactttAGAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAGgtacaatcccatctggaatgcactcttagcaaactcctagataactgctg Alignment from Exonerate_coding2genome AGAAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaacttggacccttcaaatataactttactgtttaactttAGAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAGgtacaatcccatctggaatgcactcttagcaaactcctagataactgctg Alignment from GeneWise CCGGACCAAGCCCTTCAACAGATGCTGGACAGAAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGAGACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAAGCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCAAAGCTGG ctggcaggaaacttggacCCTTCAAATATAACTTTACTGTTTAACTTTAGAAGTTGCTGGGTGTGCTTTGCCACTGATGAAGATGATCGGATGGCTGAGTGGGTGAGACTGTGCAGGTGTAGAGGATCTACTAAGTGGGTACACCAAGCTTGCCTCCAACGCTGGGTAGATGAGAAGCAGAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCCCAGTGCAATGCTGAGTACTTAATAGTGTTTCCTAAACTAGgtacaatcccatctggaatgcactcttagcaaactcctagataactgctg #### March5_ID7303_5 --> 2 - 0 Original Alignment ggATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGA---ATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattaggaATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTT---GCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac Alignment from CESAR ggATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattaggaATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTTGCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac Alignment from Spaln_aa2Genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattagGAATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTTGCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac Alignment from Spaln_nt2Genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattagGAATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTTGCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac Alignment from Pairagon GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattagGAATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTTGCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac Alignment from Exonerate_protein2genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattagGAATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTTGCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac Alignment from Exonerate_coding2genome GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattagGAATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTTGCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac Alignment from GeneWise GGATTGGTTGTCCTGTTCCTCGAATTCCAGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCTACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTG ttcacttgtattcctgaaaaataccctattcttcatcttcttttcattagGAATTGGCTGTCCTGTTCCTAGGATTCCAGCTGAAGCTAACCCCTTACCAGACCATGTTGCTACTAGACGAATCTTGTGTGGAGCCCTTGTCTTTCCAACTATTGCAACAATAGTTGGTAAATTGATGTTCAGTAGTGTTAACTCAAATTTACAGAGGACAATTTTGgtaagtctggttcagtcttacttctttagtaaaatgcagatgcaagctac #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaactgagctacactagagcccatgttttttttttgccttttgcagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaaattaattggactgctcaggatagttccaagggtggctacaccgggg #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagttAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTggtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCg aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagttAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTggtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Pairagon TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTCTCTACCTTGTCATGGAGTATGCCAGTGGCG aacctgcacacaggtgtgcccctgaactggtaattgattatcattttcagTTAAGTGGTTTGATATCATTGACACTGAGAAGACACTTTACCTAGTTATGGAGTATGCCAGTGGTGgtgggtctgaaattgctcccaatgcttggcccttgcctttctgcgaatct #### Mgea5_ID9585_13 --> 0 - 2 Original Alignment GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACaa acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACaagtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact Alignment from CESAR GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACaa acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACaagtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact Alignment from Spaln_aa2Genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACAAgtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact Alignment from Spaln_nt2Genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACAAgtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact Alignment from Pairagon GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACAAgtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact Alignment from Exonerate_protein2genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACAAgtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact Alignment from Exonerate_coding2genome GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACAAgtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact Alignment from GeneWise GCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAA acttgatgctttataataacctcttcataaatctgttttttccttaacagGCTTCTGTGTACCAAATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTATACAGAGTCAGCCTGACCTGATTGGAGACAAgtaggtgagaactgcagaactgcatcagttggaatcagcctgacctaact #### Mgea5_ID9586_12 --> 0 - 0 Original Alignment CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag Alignment from CESAR CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag Alignment from Spaln_aa2Genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag Alignment from Spaln_nt2Genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag Alignment from Pairagon CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag Alignment from Exonerate_protein2genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag Alignment from Exonerate_coding2genome CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag Alignment from GeneWise CGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAG agatgagtgtctccccaatgctaatcggcatctctcaccccaccctgcagCGCTTGCTGCCAATTGATGGAGCGAATGATCTTTTTTTTCAGCCCCCCCCACTGACTCCAACCTCCAAAGTTTATACAATCAGACCCTATTTCCCTAAAGATGAGgtggggatgcttcaactgtctttatggttttgacctaggcaaagtggaag #### Mgea5_ID9588_11 --> 2 - 0 Original Alignment ggTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagggTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc Alignment from CESAR ggTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagggTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc Alignment from Spaln_aa2Genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc Alignment from Spaln_nt2Genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc Alignment from Pairagon GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc Alignment from Exonerate_protein2genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc Alignment from Exonerate_coding2genome GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc Alignment from GeneWise GGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAG tgcaaggaaaccatcctaaaacattctctgacttctctctcactttgcagGGTGTCGTAGTCACTCTGCAGCACAATTCTTAGTTGGAGACCAGGAGCCCTGGGCCTTTAGGGGTGGTCTAGCAGGAGAGTTCCAGgtgagtataagaaaccactcactttgtttcatgagaacttgtcaactgcc #### Mgea5_ID9591_10 --> 0 - 1 Original Alignment ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAg acagatgactacgtttctgggctatctggtgactatgtatctctccccagACAGAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAggtgagagcatctcaagatttctctctctgtatatattggcctttaaattc Alignment from CESAR ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAg acagatgactacgtttctgggctatctggtgactatgtatctctccccagACAGAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAggtgagagcatctcaagatttctctctctgtatatattggcctttaaattc Alignment from Spaln_aa2Genome AAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG acagatgactacgtttctgggctatctggtgactatgtatctctccccagacagAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAGgtgagagcatctcaagatttctctctctgtatatattggcctttaaattc Alignment from Spaln_nt2Genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG acagatgactacgtttctgggctatctggtgactatgtatctctccccagACAGAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAGgtgagagcatctcaagatttctctctctgtatatattggcctttaaattc Alignment from Pairagon ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG acagatgactacgtttctgggctatctggtgactatgtatctctccccagACAGAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAGgtgagagcatctcaagatttctctctctgtatatattggcctttaaattc Alignment from Exonerate_protein2genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG acagatgactacgtttctgggctatctggtgactatgtatctctccccagACAGAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAGgtgagagcatctcaagatttctctctctgtatatattggcctttaaattc Alignment from Exonerate_coding2genome ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG acagatgactacgtttctgggctatctggtgactatgtatctctccccagACAGAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAGgtgagagcatctcaagatttctctctctgtatatattggcctttaaattc Alignment from GeneWise ATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAG acagatgactacgtttctgggctatctggtgactatgtatctctccccagACAGAGGAATGGCGGTCACGAGCAGCTAAGTTTGAAGAGATGTGTGCATTAGTGATGGGGATGTTCTCCCAGCTTTCCAACTGTGCCAACAGGACTATCCTTTATGACATGTACTCCTATGTGTGGGACATTAAGAGTTTAATGTCTATGGTGAAATCTTTCGTGCAATGGTTAGgtgagagcatctcaagatttctctctctgtatatattggcctttaaattc #### Mgea5_ID9592_9 --> 2 - 0 Original Alignment gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccaggtAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgttagtggacatcatcttattaacatcaattagagttattttccctaaaa Alignment from CESAR gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccaggtAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgttagtggacatcatcttattaacatcaattagagttattttccctaaaa Alignment from Spaln_aa2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAATAG gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccagGTAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAGTTAgtggacatcatcttattaacatcaattagagttattttccctaaaa Alignment from Spaln_nt2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccagGTAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgttagtggacatcatcttattaacatcaattagagttattttccctaaaa Alignment from Pairagon GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccagGTAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgttagtggacatcatcttattaacatcaattagagttattttccctaaaa Alignment from Exonerate_protein2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccagGTAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgttagtggacatcatcttattaacatcaattagagttattttccctaaaa Alignment from Exonerate_coding2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccagGTAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgttagtggacatcatcttattaacatcaattagagttattttccctaaaa Alignment from GeneWise GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA gatcatatatgtttgatgctgtcctccgaatatggcttttttcccaccagGTAGGCAGGTTGCACACAGTGGAGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCTTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCGGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgttagtggacatcatcttattaacatcaattagagttattttccctaaaa #### Mgea5_ID9599_2 --> 2 - 2 Original Alignment ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag gaggggatcccaccctcattttgagctatccacctcctgtccttccccagggTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAaggtacggtccatgcaccacagcaccacagaacactggagcactgagagcat Alignment from CESAR ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag gaggggatcccaccctcattttgagctatccacctcctgtccttccccagggTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAaggtacggtccatgcaccacagcaccacagaacactggagcactgagagcat Alignment from Spaln_aa2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG gaggggatcccaccctcattttgagctatccacctcctgtccttccccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtacggtccatgcaccacagcaccacagaacactggagcactgagagcat Alignment from Spaln_nt2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG gaggggatcccaccctcattttgagctatccacctcctgtccttccccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtacggtccatgcaccacagcaccacagaacactggagcactgagagcat Alignment from Pairagon GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG gaggggatcccaccctcattttgagctatccacctcctgtccttccccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtacggtccatgcaccacagcaccacagaacactggagcactgagagcat Alignment from Exonerate_protein2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG gaggggatcccaccctcattttgagctatccacctcctgtccttccccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtacggtccatgcaccacagcaccacagaacactggagcactgagagcat Alignment from Exonerate_coding2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG gaggggatcccaccctcattttgagctatccacctcctgtccttccccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtacggtccatgcaccacagcaccacagaacactggagcactgagagcat Alignment from GeneWise GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG gaggggatcccaccctcattttgagctatccacctcctgtccttccccagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtacggtccatgcaccacagcaccacagaacactggagcactgagagcat #### Minpp1_ID6696_2 --> 2 - 1 Original Alignment atATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAg aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagatATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAggtaagctgcatactatttcccctagttgtcttccttttacattctgtatt Alignment from CESAR atATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAg aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagatATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAggtaagctgcatactatttcccctagttgtcttccttttacattctgtatt Alignment from Spaln_aa2Genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagATATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAGgtaagctgcatactatttcccctagttgtcttccttttacattctgtatt Alignment from Spaln_nt2Genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagATATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAGgtaagctgcatactatttcccctagttgtcttccttttacattctgtatt Alignment from Pairagon ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagATATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAGgtaagctgcatactatttcccctagttgtcttccttttacattctgtatt Alignment from Exonerate_protein2genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagATATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAGgtaagctgcatactatttcccctagttgtcttccttttacattctgtatt Alignment from Exonerate_coding2genome ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagATATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAGgtaagctgcatactatttcccctagttgtcttccttttacattctgtatt Alignment from GeneWise ATATGGAGTGTGGCCCTCCAAGAATTAATGATAAACTAATGAGGTTCTTCGATCATTGTGAGAAGTTCTTAACTGATGTGGAAAGAAACGAGACGGCTCTTTATCATGTGGAAGCTTTCAAAACTGGACCAGAAATGCAGAAGGTCTTAAAGAAAGTTGCAGCTACTCTGCAAGTGCCAATGAACAGTTTAAATGCAG aagcttcccaggctttattatgtagcttatttttgtatttttaaatatagATATGGAGTGTGGCCCCCCCAGAATCAACGATAAACTAATGAGATTCTTTGATCATTGTGAAAAGTTCTTAACTGATGTGCAACGGAACGAGACAGCTCTTTTTCATGTGGAAGCCCTAAAGACTGGACCAGAAATGCAAAAGGTCTTGAAAAAAGTTGCAGCCACCTTGCAAGTGCCTATGAACAGCTTGAATGCAGgtaagctgcatactatttcccctagttgtcttccttttacattctgtatt #### Morn4_ID8390_2 --> 2 - 2 Original Alignment gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag agggatctagaagggtctctactagtatgtaacagtggtttgtcatccaggcTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAaggtacctaccaagtcaattctctggcaagactctaatacagatagggcacc Alignment from CESAR gcCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAag agggatctagaagggtctctactagtatgtaacagtggtttgtcatccaggcTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAaggtacctaccaagtcaattctctggcaagactctaatacagatagggcacc Alignment from Spaln_aa2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG agggatctagaagggtctctactagtatgtaacagtggtttgtcatccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtacctaccaagtcaattctctggcaagactctaatacagatagggcacc Alignment from Spaln_nt2Genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG agggatctagaagggtctctactagtatgtaacagtggtttgtcatccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtacctaccaagtcaattctctggcaagactctaatacagatagggcacc Alignment from Pairagon GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG agggatctagaagggtctctactagtatgtaacagtggtttgtcatccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtacctaccaagtcaattctctggcaagactctaatacagatagggcacc Alignment from Exonerate_protein2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG agggatctagaagggtctctactagtatgtaacagtggtttgtcatccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtacctaccaagtcaattctctggcaagactctaatacagatagggcacc Alignment from Exonerate_coding2genome GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG agggatctagaagggtctctactagtatgtaacagtggtttgtcatccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtacctaccaagtcaattctctggcaagactctaatacagatagggcacc Alignment from GeneWise GCCGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGACGGTGGCACCTACCTGGGTCACTTCGAGAATGGGCTTTTTAATGGCTTTGGAGTCCTGACCTTCTCAGATGGCTCAAG agggatctagaagggtctctactagtatgtaacagtggtttgtcatccagGCTGGAGACATGGCTTTGGTCAATTGGTGTTTGCAGATGGTGGTACCTACTTGGGTCACTTCAAGAATGGGCTTTTTAATGGCCTTGGGGTCTTGACCTTCTCAGATGGCTCAAGgtacctaccaagtcaattctctggcaagactctaatacagatagggcacc #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc #### Ms4a10_ID3084_3 --> 0 - 0 Original Alignment TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcatctggtggtatagggactcacttataatttttttttagTTTCTTGTTGCGGGGATGGTGGCCATGACAACAGTAACATTCCCAAAGACCTCTCTAgtgagctggtccctttaaaccatgtccttaaagtgggggataggggcacc Alignment from CESAR TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcatctggtggtatagggactcacttataatttttttttagTTTCTTGTTGCGGGGATGGTGGCCATGACAACAGTAACATTCCCAAAGACCTCTCTAgtgagctggtccctttaaaccatgtccttaaagtgggggataggggcacc Alignment from Spaln_aa2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcatctggtggtatagggactcacttataatttttttttagTTTCTTGTTGCGGGGATGGTGGCCATGACAACAGTAACATTCCCAAAGACCTCTCTAgtgagctggtccctttaaaccatgtccttaaagtgggggataggggcacc Alignment from Spaln_nt2Genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcatctggtggtatagggactcacttataatttttttttagTTTCTTGTTGCGGGGATGGTGGCCATGACAACAGTAACATTCCCAAAGACCTCTCTAgtgagctggtccctttaaaccatgtccttaaagtgggggataggggcacc Alignment from Pairagon TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcatctggtggtatagggactcacttataatttttttttagTTTCTTGTTGCGGGGATGGTGGCCATGACAACAGTAACATTCCCAAAGACCTCTCTAgtgagctggtccctttaaaccatgtccttaaagtgggggataggggcacc Alignment from Exonerate_protein2genome TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcatctggtggtatagggactcacttataatttttttttagTTTCTTGTTGCGGGGATGGTGGCCATGACAACAGTAACATTCCCAAAGACCTCTCTAgtgagctggtccctttaaaccatgtccttaaagtgggggataggggcacc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTCTCGTTGCAGGGATGGCGGCCATGACAACAGTGACATTCCCTAAGACCTCTCTG agaaccctgtcatctggtggtatagggactcacttataatttttttttagTTTCTTGTTGCGGGGATGGTGGCCATGACAACAGTAACATTCCCAAAGACCTCTCTAgtgagctggtccctttaaaccatgtccttaaagtgggggataggggcacc #### Ms4a13_ID3141_6 --> 0 - 0 Original Alignment CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga Alignment from CESAR CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga Alignment from Spaln_aa2Genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga Alignment from Spaln_nt2Genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga Alignment from Pairagon CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga Alignment from Exonerate_protein2genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga Alignment from Exonerate_coding2genome CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga Alignment from GeneWise CCCTTAAGTTCAATTGTGAAGTCATTGGTGAGGAAAACTTGGAGGCTCAGCAGCCTTGCTGCTTGGAGACAGATGATTTGGCTTGAG gccgtgtattttcaatcaaggatttgcctaacgtgagacttatcttatagCCATTATGCTCAATTGTGAAGTCTCTGGTCAGGAAAACTTGGAGGCTCAGCAGCCTGGCTGCTTGGAGACAAATGATATGGCTTGAGgtgagcgatcaacagtttcttgatggggatgacctggggcagatactgga #### Ms4a13_ID3143_4 --> 0 - 0 Original Alignment ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga Alignment from CESAR ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga Alignment from Spaln_aa2Genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga Alignment from Spaln_nt2Genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga Alignment from Pairagon ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga Alignment from Exonerate_protein2genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga Alignment from Exonerate_coding2genome ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga Alignment from GeneWise ATTCTCTGTACTATGTCCCTGAACATACTCTGCATAATTATTACGATCGTTGCAGCCAGCCTAACAATAGTGGAATTGTCTCATTTCCGTTCGGTGTCATATAGAAATTATGGACAAGCA aagatcattctgtataatcaatgatcgaccaatccctttattctcctcagATTCTGTGTACGATGTCCCTAAACATACTCTGCATAATTGTTACAATTATCGGAGCCAGCCTGACAATAGTGGAACTGTCACATTTCCGTTCAGTGTCATATAGGAACTATGGACAAGAAgtagggaacttttctagacagatgttcctttcctagtaagatccgctgga #### Ms4a13_ID3145_2 --> 0 - 0 Original Alignment GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta Alignment from CESAR GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta Alignment from Spaln_aa2Genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta Alignment from Spaln_nt2Genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta Alignment from Pairagon GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta Alignment from Exonerate_protein2genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta Alignment from Exonerate_coding2genome GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta Alignment from GeneWise GTTATCCAGATTATGATTGGAATCTATCATGTACTCATGTGGTATTTCCTATTGCTGTTGTATATGGGACAAATTAAAGGAGTATTTGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCTTTATGGGGATTTGCT ctaagaccttcagcattagaatttaatatgatcccttcctttcttctcagGTTGTCCAGATTATGATTGGCATTTATCATGTACTCATGTGGTACATCCTGTTGCCATTATATATGGGACAAATTAAAGGAGTATTCGGAACATATGAACCTGTAACTTACAAAATGGGAACTTCT---TGGGGATTCGCTgtgagtagaatatgttggctgtgggctgtggcatgctagttagaagacta #### Ms4a15_ID3093_4 --> 0 - 0 Original Alignment TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag Alignment from CESAR TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag Alignment from Spaln_aa2Genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag Alignment from Spaln_nt2Genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag Alignment from Pairagon TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag Alignment from Exonerate_protein2genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag Alignment from Exonerate_coding2genome TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag Alignment from GeneWise TTTATCATCTCTGGGTCCCTCTCCGTAGCAGCTGAGAGGAACCACACCAGTTGCCTG atttgagagttccactagtaagactaattctcctttgtgctgtgttacagTTTATCATTTCTGGGTCCCTCTCCGTAGCAGCTGAGAGAAATCACACCAGTTGCCTGgtatatataccacatccgctctctggcacaaggttgaaaggtacagagag #### Ms4a18_ID3100_5 --> 0 - 0 Original Alignment AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATC---------CTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCTTGAATTT------------------------GGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga Alignment from CESAR AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCTT---------------GAATTTGGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga Alignment from Spaln_aa2Genome AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCTT---------------GAATTTGGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga Alignment from Spaln_nt2Genome AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCT----TG-----------AATTTGGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga Alignment from Pairagon AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCTT---------------GAATTTGGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga Alignment from Exonerate_protein2genome AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCTT---------------GAATTTGGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga Alignment from Exonerate_coding2genome AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCTT---------------GAATTTGGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga Alignment from GeneWise AGTTCTATGAAGGCAGCTGCTGGTAGTATCCTCCCCTTCGCCCTCCTTGAATTCATCCTCACCTGCATAGCCTCACATTTTGGATGCCAGGCTGTCTGCTGCGCCCATTTTCAG cgggtaaatcacatagctccacaaatggctgattctcttgtcccccacagAGTTCTATGAAGGCTGCTGCTGGTAGTATTCTCCCCTTTCCCCTCCTTGAATTCATCCTT---------------GAATTTGGATGCCAAGCTGTTAGCTGTGCACACTTCCAGgtaagtaatcataacctaaactactgcttggccaagcaagcgggtaaaga #### Ms4a18_ID3103_2 --> 0 - 0 Original Alignment GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg Alignment from CESAR GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg Alignment from Spaln_aa2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg Alignment from Spaln_nt2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg Alignment from Pairagon GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg Alignment from Exonerate_protein2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg Alignment from Exonerate_coding2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg Alignment from GeneWise GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT taaaccctaatggatttccttcaagtttggtgggttattgttatttctagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGGTATTTAATCTGGGGGGGCCTATCAgtaagaataaggctgtgaggactccttactggggagagtcagatcagagg #### Ms4a1_ID3152_4 --> 0 - 0 Original Alignment GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATA---ATTTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGCTTGTA---ACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac Alignment from CESAR GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATAATT---TCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGCTTGTA---ACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac Alignment from Spaln_aa2Genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATAATT---TCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGCTTGTA---ACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac Alignment from Spaln_nt2Genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATAA---TTTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGC---TTGTAACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac Alignment from Pairagon GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATAA---TTTCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGCTTGT---AACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac Alignment from Exonerate_protein2genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATAATT---TCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGCTTGTA---ACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac Alignment from Exonerate_coding2genome GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATAATT---TCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGCTTGTA---ACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac Alignment from GeneWise GTCAAAGCAAAAGTGATAATGAGCTCTCTAAGCCTCTTTGCTGCCATTTCTGGAATAATTCTTTCAATCATGGACATACTTAACATGACACTTTCTCATTTTTTAAAAATGAGAAGACTGGAGCTTATTCAAACTTCCAAGCCGTATGTTGATATCTACGACTGTGAACCATCTAATTCCTCAGAGAAAAACTCCCCATCTACACAGTACTGTAACAGCATTCAGTCTGTGTTCTTG tggaatccaatatccagcttcagggattacagtctcctttccatccccagGTCAAAGCAAAAGTCATAATGAGTTCCCTAAGCCTCTTTGCTGCCATCTCTGGAATAATT---TCAATTATGGACATACTTAACATCACACTTACTCATTTTCTAAAGACAAGAAGACTGGAGCTTGTA---ACTTCCAAGCCATATGTTGACATTTATGACTGCGAACCATCTAATTCCTCAGAAAAAAACTCCCCATCTACACAGTACAGTAATAGCATTCAATCTGTGTTCTTGgtgcggatcatagcactaaacatttgtgaggaggaaagacatctcttaac #### Ms4a2_ID3242_3 --> 0 - 0 Original Alignment GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga Alignment from CESAR GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga Alignment from Spaln_aa2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga Alignment from Spaln_nt2Genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGA------TTTGTTTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga Alignment from Pairagon GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGA------TTTGTTTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga Alignment from Exonerate_protein2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga Alignment from Exonerate_coding2genome GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGATT------TGTTTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga Alignment from GeneWise GCAACACAAATTCTGGTTGGTTTGATATGCCTTTGTTTTGGAACAATTGTCTGCTCCGTACTCTATGTTTCAGACTTTGATGAAGAAGTGCTTTTACTTTATAAACTAGGCTATCCATTCTGGGGTGCAGTGCTG ttttttgcatattcacgaattgttacaagacagtgtgttcttgcccttagGCAACACAGATTTTGGTTGGTCTGATTTGT------TTTGGAACAATTGTCTGCTCTGTACTCTATGTTTCAGACTTTGATGAAGAAGTTCTCTCACTCTATAAGCTTGTATATCCCTTCTGGGGTGCAGTCCTGgtgagtacacactcgtaattttgcaccaatgctagacagtagccttctga #### Ms4a3_ID3248_5 --> 0 - 0 Original Alignment GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa Alignment from CESAR GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa Alignment from Spaln_aa2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa Alignment from Spaln_nt2Genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa Alignment from Pairagon GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa Alignment from Exonerate_protein2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa Alignment from Exonerate_coding2genome GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa Alignment from GeneWise GGCCTGGTGTCTTTAATGCTGATTCTCACCCTGCTGGAGCTGTCCGTGACCATTTCTATCTCTGCCATGTGGTGCTTGGGAAATGTTTGTGGTTTAAGAGAG tgagttttcattcctgactgtttttttgttgctctctcaccgatctacagGGCCTGGTATCATTAATGCTGATTCTCAGTCTGCTAGAGCTGTCAGTGACCAGTTCTATCTCCTCCATGTGGTGTTTAGGGAATGTTTGTGGTTTAAGGGAGgtaagaatagcaagaatgtagggcaatttcagtcacttcagtacacacaa #### Ms4a3_ID3249_4 --> 0 - 0 Original Alignment ATGCAAAACAGTTTTGGGATAAACATTGCC------AGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga Alignment from CESAR ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga Alignment from Spaln_aa2Genome ATGCAAAACAGTTTTGGGATAAAC------ATTGCCAGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga Alignment from Spaln_nt2Genome ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga Alignment from Pairagon ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga Alignment from Exonerate_protein2genome ATGCAAAACAGTTTTGGGATAAAC------ATTGCCAGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga Alignment from Exonerate_coding2genome ATGCAAAACAGTTTTGGGATAAAC------ATTGCCAGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga Alignment from GeneWise ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT ataggcatatactgccaggacaactttagatctcttatctttttctgtagATGCAAAATAGTTCTGGAATAAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTGCATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGCGTCTGCATTTCCCTAGGTTCTTCATCAGATgtaccggtgaaagcttttattagctgtggagacctggctttcatctggga #### Ms4a3_ID3251_2 --> 0 - 0 Original Alignment GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTCAAC---TTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct Alignment from CESAR GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct Alignment from Spaln_aa2Genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct Alignment from Spaln_nt2Genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTCA---ACTTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct Alignment from Pairagon GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTCA---ACTTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct Alignment from Exonerate_protein2genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct Alignment from Exonerate_coding2genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct Alignment from GeneWise GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT gagaataaaaacaatattacacattcttttgagctctctttactttgtagGCAATCCAGATTCTAAATGGTATACTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCCGCATTTGACACAGGTTACCCACTGTGGGGTGCTGTATTTgtgagtatcttgccttcagcacatctcatgtagtagcataagtggtacct #### Ms4a4b_ID3188_2 --> 0 - 0 Original Alignment GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg Alignment from CESAR GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg Alignment from Spaln_aa2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg Alignment from Spaln_nt2Genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg Alignment from Pairagon GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg Alignment from Exonerate_protein2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg Alignment from Exonerate_coding2genome GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg Alignment from GeneWise GTTTTACAAGTGATGATTGCTATCATAAACCTCAGCTTAGGAATAATAATTTTGACAACTTTATTTTCTGAACTACCCACTTCAGTGATGTTAATGGTCCCAATTTGGGGATCAATAATG atgtaggcaagtgaaagtccttaatcaattccatcttttatttctaatagGTTTTACAAGTTATGATTGCTATAATTAACCTCAGCTTAGGAATAATAATTTTGACAACGTTATGCTCTGAACTACCAACTTCAGTGATGCTAATGGTCCCAATTTGGGGATCTATAATGgtatggactgcagtcattctcaaattgaggacctcatagtcaagcccatg #### Ms4a4b_ID3189_3 --> 0 - 0 Original Alignment TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGTGT---GCCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc Alignment from CESAR TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGTGT---GCCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc Alignment from Spaln_aa2Genome TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGTGT---GCCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc Alignment from Spaln_nt2Genome TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGT---GTGCCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc Alignment from Pairagon TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGTGTG---CCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc Alignment from Exonerate_protein2genome TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGTGT---GCCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc Alignment from Exonerate_coding2genome TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGTGT---GCCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc Alignment from GeneWise TTCATTGTCTCCGGATCCCTGTCCATTGCAGCAGGAGTGACACCTACAAAATGCCTG tgaaaaagtagtaaggctttgttgatagctatcctaaaatggtcttacagTTTATTGTGTGT---GCCCTGTCCATTACGGCTGGAGTGACATCTACAAAGTGCCTAgtgagggagctcttgctttggttaaaaaaaataaggtaatttcagtaagc #### Ms4a5_ID3163_2 --> 0 - 0 Original Alignment ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta Alignment from CESAR ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta Alignment from Spaln_aa2Genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta Alignment from Spaln_nt2Genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta Alignment from Pairagon ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta Alignment from Exonerate_protein2genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta Alignment from Exonerate_coding2genome ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta Alignment from GeneWise ACCACCCAGATCCTGTTTGGAATCATGAACTTTTCATTTGGAGTCATTTTCCTTTTCACCTTGGTAAACCCATACCCAAGGTTTCCTTTTATATTTATCTCAGGATATCCTTTCTGGGGCTCTGTTTTG ggggatatactcatccccatatggatactgctgtcattctttcatcctagACTACCCAGATTGTGTTTGGAATCATGAATTTCTCATTTGGGGTCATTTTCCTTTTCACCTTAATAAACCCTTACCCAAGGTTTGCTTTTATATTTACGTCTGGATATCCCTTCTGGGGCTCTATTGTGgtaatggtgatacacttggtccaggtgcaacacagggaagtggcagggta #### Ms4a6b_ID3216_5 --> 0 - 0 Original Alignment GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTG---------TGGTGGAAACAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg Alignment from CESAR GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTGTGGTGG---------AAACAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg Alignment from Spaln_aa2Genome GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTG---------TGGTGGAAACAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg Alignment from Spaln_nt2Genome GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTGTGGTGGAA---------ACAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg Alignment from Pairagon GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCT---------GTGGTGGAAACAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg Alignment from Exonerate_protein2genome GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTG---------TGGTGGAAACAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg Alignment from Exonerate_coding2genome GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTG---------TGGTGGAAACAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg Alignment from GeneWise GGAGTCTTTTCACTGATGCTGATCAGTACTATGTTGGAACTTGGCCTGGCTGTCCTCACTGCCATGCTGTGGTGGAAA---------CAGAGTCACTCTAACATCCCTGGG agtacaaaaatgatgagccttgaatgttcattttaatttaccatccatagGGGGTCTTCTCTCAGATGCTGATCCGTACCATGTTGGAGCTTGGACTCACAATCCCAACAGCAATGCTGTGGTGGAAGTGGTGGAAACAAAGTCACTCCAACATCCCTGGGgtaagtgcttgaaagctcctgggaatctcgttgaatgtggtttgttattg #### Ms4a6c_ID3198_3 --> 0 - 0 Original Alignment TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag Alignment from CESAR TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag Alignment from Spaln_aa2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag Alignment from Spaln_nt2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag Alignment from Pairagon TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag Alignment from Exonerate_protein2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag Alignment from Exonerate_coding2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag Alignment from GeneWise TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcagtctggaggagcaatctgctcacctctgtttgtccctagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtgaggccagaactggcgcttctgggaccaaaggattcttcaggcttaag #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg ggtttctgacttatttccatctctcacactcagttggtgttttcctacaggaGAGTCAGATAATCGAAATCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGATTGACCAGTTCCTAGTGGTGGCTcggtgagcaaatgttcagggaggtcacataggtgcattgcactgaaatttgc Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCcg ggtttctgacttatttccatctctcacactcagttggtgttttcctacaggaGAGTCAGATAATCGAAATCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGATTGACCAGTTCCTAGTGGTGGCTcggtgagcaaatgttcagggaggtcacataggtgcattgcactgaaatttgc Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG ggtttctgacttatttccatctctcacactcagttggtgttttcctacagGAGAGTCAGATAATCGAAATCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGATTGACCAGTTCCTAGTGGTGGCTCGgtgagcaaatgttcagggaggtcacataggtgcattgcactgaaatttgc Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG ggtttctgacttatttccatctctcacactcagttggtgttttcctacagGAGAGTCAGATAATCGAAATCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGATTGACCAGTTCCTAGTGGTGGCTCGgtgagcaaatgttcagggaggtcacataggtgcattgcactgaaatttgc Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG ggtttctgacttatttccatctctcacactcagttggtgttttcctacagGAGAGTCAGATAATCGAAATCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGATTGACCAGTTCCTAGTGGTGGCTCGgtgagcaaatgttcagggaggtcacataggtgcattgcactgaaatttgc Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG ggtttctgacttatttccatctctcacactcagttggtgttttcctacagGAGAGTCAGATAATCGAAATCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGATTGACCAGTTCCTAGTGGTGGCTCGgtgagcaaatgttcagggaggtcacataggtgcattgcactgaaatttgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG ggtttctgacttatttccatctctcacactcagttggtgttttcctacagGAGAGTCAGATAATCGAAATCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGATTGACCAGTTCCTAGTGGTGGCTCGgtgagcaaatgttcagggaggtcacataggtgcattgcactgaaatttgc #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcgagcaaggtcagatcttctatttctcaaggcgttctccttctgcagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise -------------------------------------------------GTGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT TTTCGAGCAAGGTCAGATCTTCTATTTCTCAAGGCGTTCTCCTTCTGCAGTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACGTTCATATGAGACTgtaggatgagcagaataaaagcatagcaggttaattatttttttttttta #### Mtl5_ID57_8 --> 0 - 2 Original Alignment GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATag tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTT------GGTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATcggtaagagagtgctttaggttagatggggtggtttcagaagagatttatga Alignment from CESAR GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATag tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTT------GGTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATcggtaagagagtgctttaggttagatggggtggtttcagaagagatttatga Alignment from Spaln_aa2Genome GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAG tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTT------GGTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATCGgtaagagagtgctttaggttagatggggtggtttcagaagagatttatga Alignment from Spaln_nt2Genome GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAG tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTTG------GTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATCGgtaagagagtgctttaggttagatggggtggtttcagaagagatttatga Alignment from Pairagon GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAG tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTTG------GTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATCGgtaagagagtgctttaggttagatggggtggtttcagaagagatttatga Alignment from Exonerate_protein2genome GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAG tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTT------GGTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATCGgtaagagagtgctttaggttagatggggtggtttcagaagagatttatga Alignment from Exonerate_coding2genome GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAG tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTT------GGTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATCGgtaagagagtgctttaggttagatggggtggtttcagaagagatttatga Alignment from GeneWise GCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTCCAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTTGTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAG tgtcttgcatgcatatcttgattccagttggtctttattgggtttcctagGCCCAAATAATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAGGAATGTCCAGAACGGAAAATGCTTATGAGCACACCCCAATACATGGAGCCAGGGGACTTT------GGTCATTATTTGTCCCCAGCTGAGTTCGCAGGACCTCCAAAGTTGAGAAAGAATCGgtaagagagtgctttaggttagatggggtggtttcagaagagatttatga #### Myof_ID7452_47 --> 1 - 2 Original Alignment gTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAgg tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagaTTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAgggtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt Alignment from CESAR gTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAgg tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagaTTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAgggtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt Alignment from Spaln_aa2Genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagATTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAGGgtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt Alignment from Spaln_nt2Genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagATTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAGGgtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt Alignment from Pairagon GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagATTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAGGgtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt Alignment from Exonerate_protein2genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagATTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAGGgtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt Alignment from Exonerate_coding2genome GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagATTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAGGgtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt Alignment from GeneWise GTACTACCTGCGTGTGATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGGGAGGACATGAGTGACATCTACGTCAAAGG tttggccttaaaggtatataattttggcgttcttctgtctcctctgtcagATTCTACCTGCGTGTTATCATCTGGAATACCAAGGACGTTATCTTGGATGAGAAGAGCATCACTGGTGAGGACATGAGTGATGTCTATGTCAAAGGgtaagtaaggatacagaagagtcccacattggagattgatcagtctcatt #### Myof_ID7457_42 --> 0 - 2 Original Alignment TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCag aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCaggtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg Alignment from CESAR TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCag aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCaggtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg Alignment from Spaln_aa2Genome TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCAG aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCAGgtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg Alignment from Spaln_nt2Genome TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCAG aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCAGgtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg Alignment from Pairagon TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCAG aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCAGgtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg Alignment from Exonerate_protein2genome TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCAG aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCAGgtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg Alignment from Exonerate_coding2genome TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCAG aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCAGgtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg Alignment from GeneWise TGTGATCCTTACATAAAAATAACCTTGGGCAAGAAAGTAATTGAAGACCGAGACCACTACATTCCCAACACTCTCAACCCAGTGTTTGGCAG aacttggatggtatagtattatctaacacattgactccacctccatgcagTGTGATCCTTACATAAAAATAACTGTGGGCAAGAAAGTAATTGAAGATCGAGACCACTATATTCCCAACACTCTCAACCCTGTATTTGGCAGgtatgatacagttaaagcgtttcttctacctagaatgtgctctaccctgg #### Myof_ID7461_39 --> 0 - 0 Original Alignment GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa Alignment from CESAR GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa Alignment from Spaln_aa2Genome GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa Alignment from Spaln_nt2Genome GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa Alignment from Pairagon GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa Alignment from Exonerate_protein2genome GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa Alignment from Exonerate_coding2genome GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa Alignment from GeneWise GAGGAAGAAATCGTTGACTGGTGGAGTAAATTTTATGCTTCCTCTGGAGAGCATGAAAAATGTGGACAGTATATTCAGAAAGGCTATTCCAAACTCAAG acatgtgaagtcacacatcacccattttacaattactcttttgcatttagGAGGAATCAATTGTTGACTGGTGGAGTAAATTCTATGCTTCCTCTGGAGAACATGAAAAGTGTGGACAGTATATTCAAAGAGGCTACTCTGAACTTAAGgtaagtgtgcgtgggttcttctaagtgggaaaaagccggttttgatataa #### Myof_ID7467_35 --> 0 - 0 Original Alignment ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa Alignment from CESAR ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa Alignment from Spaln_aa2Genome ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa Alignment from Spaln_nt2Genome ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa Alignment from Pairagon ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa Alignment from Exonerate_protein2genome ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa Alignment from Exonerate_coding2genome ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa Alignment from GeneWise ATCCTAGCTTGGGGCTTAAGAAATATGAAAAACTACCAGATGGCTTCTGTCACATCACCCAGCCTGGTGGTGGAATGCGGAGGAGAGAGAGTAGAATCGGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTCTTCATGAAAGTG atcagagtgtttcatggaccttgggtcccccatgtctctttctcccacagATCCTGGCTTGGGGCTTAAGAAATATGAAAAACTACCAAATGGCTTTCGTGACATCGCCCAGCCTGGTGGTTGAATGTGGAGGAGAGAGAGTAGAATCAGTGGTGATCAAAAGCCTTAAGAAGACACCCAACTTCCCAAGTTCTGTTCTGTTCATGAAAGTCgtgagtcatcttgagtcaggccaacttatagcatgttttagagcctgtaa #### Myof_ID7470_32 --> 2 - 0 Original Alignment atCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagatCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta Alignment from CESAR atCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagatCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta Alignment from Spaln_aa2Genome ATCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagATCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta Alignment from Spaln_nt2Genome ATCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagATCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta Alignment from Pairagon ATCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagATCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta Alignment from Exonerate_protein2genome ATCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagATCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta Alignment from Exonerate_coding2genome ATCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagATCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta Alignment from GeneWise ATCCATACGCCCATGTCTCCTTCCTCCATCGAAGCAAAACCACTGAGATCATCCACTCCACCCTGAATCCCACCTGGGACCAAACCATTATATTCGATGAGGTTGAAATCTTTGGGGAACCCCAAACAGTTCTACAGAACCCACCCAACGTTACCATAGAACTTTTTGACAATGACCAAGTG ttcccttcacccgatacgtgaaaccgttttaagcacagtcttattatcagATCCATATGCCCATGTCTCCTTCATCCATCAGAGCAAAACCACCAAGACCATTCACTCCACCCTGAATCCTAAATGGGACCAAACCATCATCTTTGATGAGGTTGAAATATTTGGAAAGCCCCAAACAATTCTGCAGAATCCACCCAATGTTACTATAGAGCTTTTTGACAATGACCAAGTGgtgtgaagcagggctgattatgataacagagaaatggggtcataaaggta #### Myof_ID7475_27 --> 0 - 1 Original Alignment AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAggtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc Alignment from CESAR AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAg tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAggtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc Alignment from Spaln_aa2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc Alignment from Spaln_nt2Genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc Alignment from Pairagon AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc Alignment from Exonerate_protein2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc Alignment from Exonerate_coding2genome AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc Alignment from GeneWise AATGGAGATAAGGCGGCATCACCCAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAGGATGACGCATGGATATATGACATAAATCGAGCAGTGGATGAGAAAG tctcatctgtactctcatctgttctgttagcagatgcctttttttttcagAATGGAGATAAGGTGGCATCCCCTAGTGAGATGACCTGCCCTCCAGGTTGGGAGTGGGAAGATGATGCATGGATTTATGACATAAATCGAGCAGTGGATGAGAAAGgtatgtctgtgtgtgtttagtgcttaccaagtatctgagtatgagtctgc #### Myof_ID7476_26 --> 1 - 0 Original Alignment cCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagcCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta Alignment from CESAR cCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagcCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta Alignment from Spaln_aa2Genome CCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagCCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta Alignment from Spaln_nt2Genome CCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagCCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta Alignment from Pairagon CCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagCCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta Alignment from Exonerate_protein2genome CCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagCCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta Alignment from Exonerate_coding2genome CCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagCCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta Alignment from GeneWise CCTCCTGACTGAGGCTGACGCAGGTCACACCGAGTTCACTGATGAAGTCTACCAGAATGAGAATCGCTACCCCGGAGGCGAGTGGAAGCAGGCAGAGGACACCTATACGGATGCG attccattagtactagcacttaatgggatctgtaactgtttttcctccagCCTCCTAACTGAGGCTGATGCAGGCCACACTGAGTTCACTGAAGAAGTCTACCAGAATGACAATCGCTACCCAGGAGCCAAGTGGAGACAGGCACAGGACACCCATACAGATGCAgtgagttgtcaggtttcagcatagaccctccatccaatttctacacacta #### Myof_ID7477_25 --> 0 - 2 Original Alignment TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAag gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAaggtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca Alignment from CESAR TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAag gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAaggtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca Alignment from Spaln_aa2Genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAAGgtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca Alignment from Spaln_nt2Genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAAGgtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca Alignment from Pairagon TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAAGgtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca Alignment from Exonerate_protein2genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAAGgtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca Alignment from Exonerate_coding2genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAAGgtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca Alignment from GeneWise TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaaccctgccttctgctctctgcagTATGAAAACCAAGCCCTCGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGGGACTGGGTGGTTGACCCTGAACGAAGgtaagtattagaatcttggtattctaggttttgtttactgtgtgaatgca #### Myof_ID7484_18 --> 0 - 0 Original Alignment GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata Alignment from CESAR GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata Alignment from Spaln_aa2Genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata Alignment from Spaln_nt2Genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata Alignment from Pairagon GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata Alignment from Exonerate_protein2genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata Alignment from Exonerate_coding2genome GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata Alignment from GeneWise GGAGAAGGGGTGGCCTACAGAGGCAGGATCTTCGTGGAACTGAACACGTTCCTTGAAAAGAAACCACCAGAAAAGAAGCTGGAGCCCATTTCCAGTGATGACCTTCTGGTTGTTGAG ctggctgtagtccctgtctgcaagagtaggagttatcttacctttttcagGGAGAAGAGGTGACCTACAGGGGCAGGATCTATGTGGAACTAAACACATTCCTTGAAAAGAAACCACCAGGCAAGAAGCTAGAACCCATTTCCAGTGATTACCTCCTGGTTGTTGAAgtatgttacagtgtttaacttacctgggacagaatgcattggagggtata #### Myof_ID7488_14 --> 0 - 0 Original Alignment GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAG ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGgtgagttttttctttacaaaaattatgtctaggatggtaattgggggaga Alignment from CESAR GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAG ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGgtgagttttttctttacaaaaattatgtctaggatggtaattgggggaga Alignment from Spaln_aa2Genome GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAG ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGgtgagttttttctttacaaaaattatgtctaggatggtaattgggggaga Alignment from Spaln_nt2Genome GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAG ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGgtgagttttttctttacaaaaattatgtctaggatggtaattgggggaga Alignment from Pairagon GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAG ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGgtgagttttttctttacaaaaattatgtctaggatggtaattgggggaga Alignment from Exonerate_protein2genome GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAGTTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGGTGAGTTTTTTCTTTACAAAAATTATGTCTAGGATGGTAATTGGgggaga Alignment from Exonerate_coding2genome GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAGTTTCCCTCCATGTGTGAAAAAATAAAACTAACAGTATATGACTG ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGGTGAGTTTTTTCTTTACAAAAATTATGTCTAGGATGGTAATTGGgggaga Alignment from GeneWise GTGTGCACAAATATAATTGAGCGGAATGCAAACCCTGAATGGAATCAAGTTGTCAACCTTCAGATCAAGTTTCCCTCCATGTGTGAAAAAATAAA ggcagttagaactgtgataacctactagcttttaatttctttttttacagGTATGCACAAACATAATTGAGCGAAATGCAAACCCAGAATGGAATCAAGTTGTCAATCTTCAGATCAAGGTGAGTTTTTTCTTTACAAAAATTATgtctaggatggtaattgggggaga #### Myof_ID7491_11 --> 2 - 0 Original Alignment gcCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTC---AGCATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttaggcCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct Alignment from CESAR gcCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTCAGC---ATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttaggcCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct Alignment from Spaln_aa2Genome GCCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTCAGC---ATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttagGCCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct Alignment from Spaln_nt2Genome GCCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTCAG---CATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttagGCCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct Alignment from Pairagon GCCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTCAG---CATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttagGCCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct Alignment from Exonerate_protein2genome GCCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTCAGC---ATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttagGCCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct Alignment from Exonerate_coding2genome GCCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTCAGC---ATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttagGCCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct Alignment from GeneWise GCCACGCTGTCATGAGGAAATGGCTCCTTCTCAATGACCCAGAAGACACCAGCTCAGGCGCAAAAGGTTACATGAAAGTCAGC---ATGTTTGTCCTGGGAACCGGAGACGAACCCCCT aatataatgttgacagcatttggccagcttccactgtgtgattgatttagGCCATGCTGTCATGAGGAAGTGGGTCCTTCTCAATGACCCAGGAGATACCAGCTCAGGTGCAAAAGGCTACATGACAGTTAGTCACATGTTTGTCCTAGGAACCAGAGATGAACCCCCTgtaagcgcctccctcactttatttttttttttgaataggtaatggccgct #### Myof_ID7492_10 --> 0 - 1 Original Alignment ATTGATGTTGGATTTGTTTATGATGAACCTg ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTggtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg Alignment from CESAR ATTGATGTTGGATTTGTTTATGATGAACCTg ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTggtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg Alignment from Spaln_aa2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTGgtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg Alignment from Spaln_nt2Genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTGgtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg Alignment from Pairagon ATTGATGTTGGATTTGTTTATGATGAACCTG ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTGgtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg Alignment from Exonerate_protein2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTGgtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg Alignment from Exonerate_coding2genome ATTGATGTTGGATTTGTTTATGATGAACCTG ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTGgtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg Alignment from GeneWise ATTGATGTTGGATTTGTTTATGATGAACCTG ctagaaggcagatcagcctctggggcctactgcttctgaccctttcccagGTTGATGTTGGCTTTGTTTATGATGAGCCTGgtaggtaacgtccccttatcaatctgaagcagcaaacccttctaagtctg #### Myof_ID7500_3 --> 0 - 2 Original Alignment ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATaa atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACaagtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt Alignment from CESAR ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATaa atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACaagtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt Alignment from Spaln_aa2Genome ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATAA atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACAAgtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt Alignment from Spaln_nt2Genome ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATAA atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACAAgtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt Alignment from Pairagon ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATAA atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACAAgtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt Alignment from Exonerate_protein2genome ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATAA atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACAAgtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt Alignment from Exonerate_coding2genome ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATAA atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACAAgtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt Alignment from GeneWise ATTTTGGAATTTGACTTGAGGGGGATACCACTGGACTCTTCATCCTCCCTGGTGATTGTTGTCAAAGATTTTGAGACAATTGGACAAAATAA atgtgctctcttacaggcatttcaattccaccctcctccctctcctgcagATCTCAGAGTTTGATCTAAGGGGAATACCACTGGAATCCTCATCCTCTCTGGTGATTGTTGTCAAGGATTTCAAGACAGTTGGACAAAACAAgtaaaatagtgccagaaagactttctctaaaaattacactatctcttagt #### Myrf_ID2712_25 --> 0 - 0 Original Alignment GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg Alignment from CESAR GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg Alignment from Spaln_aa2Genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg Alignment from Spaln_nt2Genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg Alignment from Pairagon GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg Alignment from Exonerate_protein2genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg Alignment from Exonerate_coding2genome GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg Alignment from GeneWise GGCACCTCTCATCAGTGGCCAGTAACCATCCTGTCCTTCCGTGAATTCACATACCACTTCCGGGTGACATTGCTG tactattttagattaggctgccctcaccttgtcctcactctctattttagGGCACATCGCATCAGTGGCCAGTTACCATACTGTCCTTCCATGAGTTTACCTACTATTTTAGAGTGACATTGCTAgtaagggcagtctagagctttgaagagggacagggtatcgaaatgctagg #### Myrf_ID2713_24 --> 1 - 0 Original Alignment tTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagtTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag Alignment from CESAR tTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagtTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag Alignment from Spaln_aa2Genome TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagTTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag Alignment from Spaln_nt2Genome TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagTTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag Alignment from Pairagon TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagTTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag Alignment from Exonerate_protein2genome TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagTTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag Alignment from Exonerate_coding2genome TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagTTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag Alignment from GeneWise TTCCTCCACCCCTGTGTCCGTGGTACTGTGCAGCCTGACATCGGAGGAGGAGCCCTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCAGGACACCCAG tcatcatgtgaagtatcatgaagtcatgtaattatagtttaacattttagTTCTTCTACTCCATTGTCTGTGATATTGTGCAGCCTGACATCAGAGCAGGAGCCGTGTGAGGAGGGAGGCTTTTTGCAGAGGTTCCACCCGCATCCTGATATTCAGgtaagcgcaggagagaaggtgtgggttcagcctcagatgtcactagctag #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcaggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcaggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagagtcctggttccaagaccatacatgagttgttattttcatttcagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTTGTCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtaccctataggatctgatgtgactccgagcatggcaagctggagcttct #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag #### Myrf_ID2733_5 --> 2 - 2 Original Alignment acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga tggactcaggggggatgtcactccctccactgctggtttctggtaaatagatCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTcagtaagttataggtagaaactctttggaggccccttggaagtaaggtagag Alignment from CESAR acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga tggactcaggggggatgtcactccctccactgctggtttctggtaaatagatCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTcagtaagttataggtagaaactctttggaggccccttggaagtaaggtagag Alignment from Spaln_aa2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggggggatgtcactccctccactgctggtttctggtaaatagATCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtaagttataggtagaaactctttggaggccccttggaagtaaggtagag Alignment from Spaln_nt2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggggggatgtcactccctccactgctggtttctggtaaatagATCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtaagttataggtagaaactctttggaggccccttggaagtaaggtagag Alignment from Pairagon ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggggggatgtcactccctccactgctggtttctggtaaatagATCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtaagttataggtagaaactctttggaggccccttggaagtaaggtagag Alignment from Exonerate_protein2genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggggggatgtcactccctccactgctggtttctggtaaatagATCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtaagttataggtagaaactctttggaggccccttggaagtaaggtagag Alignment from Exonerate_coding2genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggggggatgtcactccctccactgctggtttctggtaaatagATCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtaagttataggtagaaactctttggaggccccttggaagtaaggtagag Alignment from GeneWise ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggggggatgtcactccctccactgctggtttctggtaaatagATCCACATCTTCTCCGCACCATAACTTCGGAAACTCTCTGCCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGACCACCACCACCACCCCCTCCCCCGCCTCATTATCCTGTCCTACAACGAGACCTCTACATGAAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTTCATCACACTCGTCAAACTCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtaagttataggtagaaactctttggaggccccttggaagtaaggtagag #### Naa40_ID2078_2 --> 0 - 0 Original Alignment AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAG---GAGAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacagCGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc Alignment from CESAR AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacagCGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc Alignment from Spaln_aa2Genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAGAGAGCG---GCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacagCGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc Alignment from Spaln_nt2Genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGA---GAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacagCGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc Alignment from Pairagon AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGA---GAGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacagCGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc Alignment from Exonerate_protein2genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacagCGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc Alignment from Exonerate_coding2genome AGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacagCGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc Alignment from GeneWise GGGAGAAAGTCGAGCAAAGCCAAAGAGAAGAAGCAGAAACGATTGGAGGAG---AGAGCGGCCATGGATGCTGTGTGTGCCAAAGTGGATGCTGCCAACAGG ttcctgagaaattggctataacccttccttatactttgtttcctccacag---CGAAAGTTGAGCAAAGCTAAAGAAAAGAAACAGAAGCGCCTGGAGGAAAAGAGAGCAGCCATGGATACTGTGTGTGCCAAGGTGGATGCCGTGAACAGGgtaaggcccagtgcctctcacaagctccttgctgtttcttgatggctctc #### Naaladl1_ID1445_4 --> 0 - 0 Original Alignment GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg Alignment from CESAR GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg Alignment from Spaln_aa2Genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg Alignment from Spaln_nt2Genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg Alignment from Pairagon GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg Alignment from Exonerate_protein2genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg Alignment from Exonerate_coding2genome GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg Alignment from GeneWise GGCCTCCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTAGAGACTCAGGGAATCAACCTCGAGGGCACCATCGCTCTGACTCGCTACGGGGGCGTAGGACGTGGGGCCAAG ctacctacctttgggtaaatgtggcatcgctcttcccctttttgttttagGGCCTTCTTGTCTATGCCAACCAAGGTTCAGAAGAGGACTTTAAGGAGTTGGAAACTCCGGAAATCAACCTTGAGGGCACAATCACTTTAACACGGTATGGTGGTGTAGGACGTGGGGCCAAGgtacgtagcacccagaaggaagcaatctggataaaagccacactggatgg #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc #### Naaladl1_ID1455_14 --> 0 - 1 Original Alignment AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTg gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTggtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag Alignment from CESAR AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTg gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTggtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag Alignment from Spaln_aa2Genome AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTGgtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag Alignment from Spaln_nt2Genome AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTGgtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag Alignment from Pairagon AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTGgtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag Alignment from Exonerate_protein2genome AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTGgtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag Alignment from Exonerate_coding2genome AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTGgtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag Alignment from GeneWise AGCAAGACCTCGGCCAGGATCTACCCCACCTACCACACAGCATTTGATACATTTGATTATGTGGAGAAGTTTCTGGACCCTG gtgtttactcacctccccccctactggctttaatttttcctgtctttcagAGTAAGACCTCAGCCAGGATCTACCCTACCTACTATGCGGCATTTGATGCACTTGACTATGTAGAGAAATTCCTGGACCCTGgtaaggtgaggtcagagatgttggaaactagcacttgaaactggcataag #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtaagtcacagaatcctgaggcagtgctaccatatctcccttctgcagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTgagtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from CESAR Gg ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga GggtaagacacagaatcctgaggcagtgctaccatatctcccttctgcagggCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTgagtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Spaln_aa2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaagtcacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Spaln_nt2Genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaagtcacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Pairagon GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaagtcacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Exonerate_protein2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaagtcacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from Exonerate_coding2genome GG GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGgtaagtcacagaatcctgaggcagtgctaccatatctcccttctgcagGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac Alignment from GeneWise G------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA GGGTAAGTCACAGAATCCTGAGGCAGTGCTACCATATCTCCCTTCTGCAGGGCCTTTGGTGACAGCAGTAGCAAACTTTAAGGCTGCGGCTGCCTCACTGGGAGAAGACATCCTGACCCTAGGGAAGAGCAGCCCTGAgtgagggccagcagaggacatgtgtcaccagatatacatggagatggtac #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACaggtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACaggtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca #### Ndufb8_ID9057_4 --> 0 - 0 Original Alignment ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga Alignment from CESAR ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga Alignment from Spaln_aa2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga Alignment from Spaln_nt2Genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga Alignment from Pairagon ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga Alignment from Exonerate_protein2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga Alignment from Exonerate_coding2genome ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga Alignment from GeneWise ATACACTGGGACCTAGACATGTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCTTCGGCTTTGTGGCTTTCATGGTTTTCATGTTCTGGGTAGGGCACGTGTTCCCTTCCTACCAGCCTGTG ggttcattgaaagagctatttgtgaccgttatacataattcttcttatagATACACTGGGACCTAGACATGTATATCAGGAATCGTGTAGACACCTCACCTACCCCTGTATCCTGGGATGTTATGTGTAAACATCTCTTTGGCTTTCTGGCTTTCATGGTTTTTATGTTCTGGGTGGGGCATGTGTTCCCTTCTTACCAGCCTGTTgtgggtttctcatgtgctcagtatgatatatgtgagaccttctctgatga #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac #### Neurl1a_ID10158_3 --> 0 - 1 Original Alignment ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAggtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat Alignment from CESAR ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAg tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAggtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat Alignment from Spaln_aa2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAGgtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat Alignment from Spaln_nt2Genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAGgtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat Alignment from Pairagon ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAGgtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat Alignment from Exonerate_protein2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAGgtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat Alignment from Exonerate_coding2genome ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAGgtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat Alignment from GeneWise ATCACCAAGAAGCAATGCTGCTGGAGCGGGGCCCTGCGACTTGGCTTCACCAGCAAGGACCCTTCCCGCATCCACCCCGACTCGCTGCCCAAGTACGCCTGCCCTGACCTGGTGTCTCAGAGTGGCTTCTGGGCCAAAGCATTGCCTGAGGAGTTTGCCAACGAGGGCAACATCATTGCCTTCTGGGTGGACAAGAAGGGCCGCGTCTTCTACCGGATCAATGAGTCAGCTGCTATGCTTTTCTTCAGTGGGGTCCGGACGGTGGACCCGCTCTGGGCCCTGGTGGACGTCTACGGCCTCACGCGGGGTGTCCAGCTGCTAG tctgaccaggaaggagaggtaagctgtgttatctatctcctctgtttcagATCACCAAGAAGCAATGCTGCTGGAGTGGGGCTCTGCGACTTGGCTTCACAAGCAAGGACCCCTCCCGCATCCACCCCGACTCACTACCCAAGTATGCATGCCCCGATCTGGTATCCCAGAGTGGCTTCTGGGCTAAAGCATTGCCTGAAGAGTTTGCCAATGAGGGGAACATTATTGCCTTCTGGGTGGATAAGAAAGGCCGTGTCTTCTACCGGATCAATGAGTCGGCTGCTATGCTTTTCTTCAGTGGGGTGCGGACAGTGGACCCGCTCTGGGCCCTTGTGGATGTCTACATCCTTACACGGGGTGTTCAGTTGTTAGgtagggtactttgttatggcccaaatatggcccagtggcgttgcaggcat #### Nfkb2_ID9825_3 --> 2 - 0 Original Alignment ctGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagctGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from CESAR ctGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagctGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Spaln_aa2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Spaln_nt2Genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Pairagon CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Exonerate_protein2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from Exonerate_coding2genome CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg Alignment from GeneWise CTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAG acactaccaggatcaaaccaagcataaacctctctttgattggccttcagCTGATGGCCCCTATCTTGTGATCGTGGAACAGACCAAACAGgtgagggtgcaatagagaaatgtgtcttcaccttcagagacaggtagggg #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagacAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAggtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAg gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagacAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAggtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGGGGTTATGGAGGCGCTGGAGGAG gggtgcttgtctgtatgaagttttgacagatattctttcctgcttaatagACAAGGAGGAAGTGCAGAGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCACATGGGTGGAGGTTCTGGTGGGTCTGCTGGGGGTTATGGAGATGCTGGGGGAGgtaactaagtacaaatgacaggggaaaggaaggagaatggaggctatatg #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC ggcagggttgaggttaacatgcagcaaagcagtccttaacttctgggaagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCGCAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaaggctgagtttgggctaccatgagatccccagggtgttaggtttcaa #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGG CAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTgtgaaaatttcttgccatcttggacctcccatgagctcagagCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTC--CG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTgtgaaaatttcttgccatcttggacctcccatgagctcagAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACctgtgaaaatttcttgccatcttggacctcccatgagctcagAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACctgtgaaaatttcttgccatcttggacctcccatgagctcagAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg #### Nhlrc2_ID12139_8 --> 0 - 0 Original Alignment AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac Alignment from CESAR AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac Alignment from Spaln_aa2Genome AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac Alignment from Spaln_nt2Genome AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac Alignment from Pairagon AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac Alignment from Exonerate_protein2genome AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac Alignment from Exonerate_coding2genome AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac Alignment from GeneWise AATTTATTTGCTTTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAG gcctcacattataacaatagtgtttcctttctctcctctgcaacctccagAATTTATTTGCTTTTGGTGATGCTGATGGAGCTTGCATCAATGCCAAGCTTCAGCACCCACTTGGGGTTGCATGGGACGAAGATAGGCAGGTATTTTACGTGGCTGACTCCTACAATCATAAAgtgcgttcaggggcccatatgcttcataccgacaatgcacctagatccac #### Nhlrc2_ID12142_10 --> 0 - 1 Original Alignment CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAg ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATggtaagtgcccatgctatataagtagtattatattacttactaagactcag Alignment from CESAR CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAg ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATggtaagtgcccatgctatataagtagtattatattacttactaagactcag Alignment from Spaln_aa2Genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATGgtaagtgcccatgctatataagtagtattatattacttactaagactcag Alignment from Spaln_nt2Genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATGgtaagtgcccatgctatataagtagtattatattacttactaagactcag Alignment from Pairagon CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATGgtaagtgcccatgctatataagtagtattatattacttactaagactcag Alignment from Exonerate_protein2genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATGgtaagtgcccatgctatataagtagtattatattacttactaagactcag Alignment from Exonerate_coding2genome CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATGgtaagtgcccatgctatataagtagtattatattacttactaagactcag Alignment from GeneWise CTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAGAGAGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCCCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAG ggtggttattgttctttaatattcatggtttaaacaactctctttgacagCTTCCAGTCTGCAAGTCTGACAGTTCTGTGGTAGATGGCTCCTTTCCTAGGGCAAAACAAAAGACAGTGCCCAAGGTACCAAAGTTTGCCACACACGTTGGTCTTCCTCCCGTGACAGTGCATCCAGGCCAGGCTCTGCAGCTTAGGCTTGAGCTCCAGCTCCCACCAGGAGCAAAGCTTACTGAGGGTGCACCCAGCTGCTGGTTCCTGGATGCTGATGgtaagtgcccatgctatataagtagtattatattacttactaagactcag #### Noc3l_ID7655_20 --> 1 - 0 Original Alignment aTCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagaTCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag Alignment from CESAR aTCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagaTCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag Alignment from Spaln_aa2Genome ATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagATCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag Alignment from Spaln_nt2Genome ATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagATCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag Alignment from Pairagon ATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagATCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag Alignment from Exonerate_protein2genome ATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagATCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag Alignment from Exonerate_coding2genome ATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagATCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag Alignment from GeneWise ATCTGCAGTTGAACTTTTTGAGACTTACAGCATGGCAGCAATGACATTCAATCCGCCTGTTGAATCTTCACACTCCAAAAGGAAG cttaaaatggaacagctaaccagagccaatccctgcctctgctccaccagATCTGCAGTTGAACTTTTTGAGACTTACTGTATGGCAGCTATGTCATTCAATCCACCTGTTGACTCTTCACATACCATAAGAAGGgtaatgcattcatatttccgtcttttcagttcatttttacaacaagagag #### Noc3l_ID7656_19 --> 0 - 2 Original Alignment AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGaggtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc Alignment from CESAR AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAag agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGaggtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc Alignment from Spaln_aa2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc Alignment from Spaln_nt2Genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc Alignment from Pairagon AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc Alignment from Exonerate_protein2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc Alignment from Exonerate_coding2genome AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc Alignment from GeneWise AGACATTACCATCCCATTGTGCGAAGGTTTGCAGCACATCTGCTTGCTGGGGCACCATCCGAAGGCTCTGAGGCCCTCAAGCCCGAGCTGAGCCGAAG agtgtatcacaaggtcagagaaagagtgttaatcttgttttctatttcagAGACATCACCATCTCATTGTGCAAAAGTTTGCAGCACACTTACTTGCTGGGGCACCATCTGAGGGCTCTGAGGCCCTCAAGCCTGAGCTGAGCCGGAGgtaggttttgcgcatgtattggggccaggtgttaagatctcctgaacagc #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccaggcACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca Alignment from CESAR gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccaggcACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca Alignment from Pairagon GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca Alignment from GeneWise GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gagcccctgaatataagaggtgatgaactctctcttttgcttttccccagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtaggacagagtctaaagagagttaggctgcccaggacaaacaggcttca #### Noc3l_ID7661_14 --> 1 - 0 Original Alignment gTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccaggTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga Alignment from CESAR gTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccaggTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga Alignment from Spaln_aa2Genome GTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccagGTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga Alignment from Spaln_nt2Genome GTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccagGTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga Alignment from Pairagon GTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccagGTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga Alignment from Exonerate_protein2genome GTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccagGTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga Alignment from Exonerate_coding2genome GTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccagGTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga Alignment from GeneWise GTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTGGTTCTTCATACCCTCATTGAGTCTGGG tattcttgtgttctttgaattgttagaaagggtttattttcatttgccagGTTTGCACATCTTATAAATGTGGAGTTTTTTGATGATTTATTAGTAGTTCTCCATACCCTCATTGATTCTGGAgtgaggatggttcataagtgatcacattttcaatacatgagaggaacaga #### Noc3l_ID7664_11 --> 0 - 0 Original Alignment ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag Alignment from CESAR ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGA---------AAAACTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag Alignment from Spaln_aa2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag Alignment from Spaln_nt2Genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAGAAGAGAAAAA---------CTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag Alignment from Pairagon ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGG---------AGAAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag Alignment from Exonerate_protein2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag Alignment from Exonerate_coding2genome ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag Alignment from GeneWise ATGTTAAAAACATTTTTATGCCTGCGGATCAAGGAGGTAGAAGTGAAAAAAGATACAGAGGACATTAACAAGCCCAAAAGGTTCATGACTTTCAAGGAG---------AAGAGAAAAACTCTATCAAGAATGCAAAGAAAG gctctgatctgttccactggcctatatccacagatgcctgccttccacagATGTTAATAACTTTTTTATGCTTGCGGATCAAGGAGGTGGAAGTGAAAAAGGATACTGAGGACATTAACAAGCCTAAGAGGTTCATGACTTTCAAGGAGAAGAGAAAGAAGAGAAAGACTCTGTCGCAAATGCAAAGGAAAgtattgcttgttttatctttactcagtatggtgaatatccacctgttcag #### Noc3l_ID7668_7 --> 0 - 0 Original Alignment ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca Alignment from CESAR ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca Alignment from Spaln_aa2Genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca Alignment from Spaln_nt2Genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca Alignment from Pairagon ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca Alignment from Exonerate_protein2genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca Alignment from Exonerate_coding2genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca Alignment from GeneWise ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagaatgtttttcgaccattcctggaaagggcatatttggtatccacagGTGAAAAAACTGAAAGAGTTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTTACTGTGTGTAAGCTGGTTATCATTTCTTTGATGGAGCTCTTCAAGGACATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCACCAAAgtgagtcccagaaattttagtatagaatatgccatgtatggggaacacca #### Noc3l_ID7669_6 --> 2 - 0 Original Alignment agGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagaaGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta Alignment from CESAR agGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagaaGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta Alignment from Spaln_aa2Genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagAAGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta Alignment from Spaln_nt2Genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagAAGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta Alignment from Pairagon AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagAAGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta Alignment from Exonerate_protein2genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagAAGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta Alignment from Exonerate_coding2genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagAAGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta Alignment from GeneWise AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcgttcgcattcatagcactattttctctaattgattcacagAAGTTATTGAAGATCCAAGGAAGGAGTTTGCCATAGAAGAGCATGTAATTGAGAGAAAGACGGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCGTCAGACCCAGAGAGTCATgtaagaagctttcacatgtaaggcgaagagtgtgattaaagtatggttta #### Nrxn2_ID1740_4 --> 2 - 1 Original Alignment taGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAg gtcaacttaagatactgggatctgtatggtgattgatctccttcttacagtaGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAggtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc Alignment from CESAR taGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAg gtcaacttaagatactgggatctgtatggtgattgatctccttcttacagtaGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAggtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc Alignment from Spaln_aa2Genome TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtcaacttaagatactgggatctgtatggtgattgatctccttcttacagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc Alignment from Spaln_nt2Genome TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtcaacttaagatactgggatctgtatggtgattgatctccttcttacagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc Alignment from Pairagon TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtcaacttaagatactgggatctgtatggtgattgatctccttcttacagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc Alignment from Exonerate_protein2genome TAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtcaacttaagatactgggatctgtatggtgattgatctccttcttacagTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc Alignment from Exonerate_coding2genome AGGAACACCCCATGGAAGGTCCGGCTCAC---CTGACGTTAAACAGCGAAGTAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGGCAAG GTCAACTTAAGATACTGGGATCTGTATGGTGATTGATCTCCTTCTTACAGTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGA-GAGGAGGAGCCGGCGATGTGCACCAGCCGACAA-----AAGgtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc Alignment from GeneWise TGGAAGGTCCGGCTCAC---CTGACGTTAAACAGCGAAGTAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAG gtcaacttaagATACTGGGATCTGTATGGTGATTGATCTCCTTCTTACAGTAGGGTCCTTACTGTTTTCCGAGGGGGGGGCTGGGAGAGGAGGAGCCGGCGATGTGCACCAGCCGACAAAAGgtaatggatcccacatcgctaagacagcccaacccttgccatgtattggc #### Nrxn2_ID1743_5 --> 2 - 0 Original Alignment gcAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacaggtGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGgtacaaagactagaaagtcatcagggatgagctacctaacattgcaatga Alignment from CESAR gcAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacaggtGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGgtacaaagactagaaagtcatcagggatgagctacctaacattgcaatga Alignment from Spaln_aa2Genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacagGTGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGgtacaaagactagaaagtcatcagggatgagctacctaacattgcaatga Alignment from Spaln_nt2Genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacagGTGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGgtacaaagactagaaagtcatcagggatgagctacctaacattgcaatga Alignment from Pairagon GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacagGTGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGgtacaaagactagaaagtcatcagggatgagctacctaacattgcaatga Alignment from Exonerate_protein2genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacagGTGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGgtacaaagactagaaagtcatcagggatgagctacctaacattgcaatga Alignment from Exonerate_coding2genome GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAGCACGCAGGGATTGGACACGCTATG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacagGTGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGGTACAAAGACTAGAAAGTCATCAGggatgagctacctaacattgcaatga Alignment from GeneWise GCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCCACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGATGCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATCAACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGCACGACGTCCGGGTTACCCGAAACCTGCGCCAG cccacagcccctcagagtatccttctgcgtctgtgtgctttgttcaacagGTGAGGAGGAGTTTGTGGCAACTTTCAAGGGCAATGAGTTCTTTTGCTATGATCTGTCACACAACCCAATTCAAAGCAGCACTGATGAGATCACATTGGCCTTCCGCACAGTCCAGCGCAACGGGCTCATGCTCCATACAGGAAGGTCAGCTGACTATGTTAACTTGTCCCTCAAGACAGGGGCTGTCTGGTTGGTCATCAACCTGGGCTCAGGTGCATTCGAATCCCTTGTAGAACCCATTAATGGGAAGTTCAATGACAACACCTGGCATGACATCCGTGTCACCCGAAATCTGCGCCAGgtacaaagactagaaagtcatcagggatgagctacctaacattgcaatga #### Nrxn2_ID1751_7 --> 0 - 0 Original Alignment GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tttatgtcggttgtctccctcctgtatactaggtcttatcttttgtgcagGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct Alignment from CESAR GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tttatgtcggttgtctccctcctgtatactaggtcttatcttttgtgcagGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct Alignment from Spaln_aa2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tttatgtcggttgtctccctcctgtatactaggtcttatcttttgtgcagGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct Alignment from Spaln_nt2Genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tttatgtcggttgtctccctcctgtatactaggtcttatcttttgtgcagGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct Alignment from Pairagon GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tttatgtcggttgtctccctcctgtatactaggtcttatcttttgtgcagGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct Alignment from Exonerate_protein2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tttatgtcggttgtctccctcctgtatactaggtcttatcttttgtgcagGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct Alignment from Exonerate_coding2genome GTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tttatgtcggttgtctccctcctgtatactaggtcttatcttttgtgcagGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct Alignment from GeneWise CACGCAGGGATTGGACACGCTATGGTGACCATCTCGGTGGACGGGATCCTGACCACCACAGGCTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACAGCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGAC tcggttgtctccctcctgtatactagGTC------TTATCTTTTGTGCAGGTGACGATCTCTGTTGATGGAATCCTAACCACCACTGGCTACACACAGGAGGACTACACCATGTTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCTAACACAGCAGACCGGCCTGGCTCACCTGTTAGCAACAACTTCATGGGTTGCCTCACAGATgtacgatgggttgtggtggttgactagcctgactgctcataggttgctct #### Nrxn2_ID1760_11 --> 2 - 1 Original Alignment acTGCCTGCGCGTCGGCTGCGCACCCa ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagatTGCCTGCGTGTGGGCTGTGCACCCagtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa Alignment from CESAR acTGCCTGCGCGTCGGCTGCGCACCCa ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagatTGCCTGCGTGTGGGCTGTGCACCCagtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa Alignment from Spaln_aa2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagATTGCCTGCGTGTGGGCTGTGCACCCAgtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa Alignment from Spaln_nt2Genome ACTGCCTGCGCGTCGGCTGCGCACCCA ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagATTGCCTGCGTGTGGGCTGTGCACCCAgtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa Alignment from Pairagon ACTGCCTGCGCGTCGGCTGCGCACCCA ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagATTGCCTGCGTGTGGGCTGTGCACCCAgtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa Alignment from Exonerate_protein2genome ACTGCCTGCGCGTCGGCTGCGCACCCA ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagATTGCCTGCGTGTGGGCTGTGCACCCAgtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa Alignment from Exonerate_coding2genome ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagattgcctgcgtgtgggctgtgcacccagtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa Alignment from GeneWise ttgctctttttttaactagcctctgcttttttggcctttgttcttcttagattgcctgcgtgtgggctgtgcacccagtgagggccttccccctacttttgcaacctcagaaaaagtcagggattaa #### Nrxn2_ID1761_12 --> 2 - 1 Original Alignment gtAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGg agtcaagtacactttctcctgctttgcctatttattttattctattgtaggtAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGggtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc Alignment from CESAR gtAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGg agtcaagtacactttctcctgctttgcctatttattttattctattgtaggtAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGggtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc Alignment from Spaln_aa2Genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agtcaagtacactttctcctgctttgcctatttattttattctattgtagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGGgtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc Alignment from Spaln_nt2Genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agtcaagtacactttctcctgctttgcctatttattttattctattgtagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGGgtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc Alignment from Pairagon GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agtcaagtacactttctcctgctttgcctatttattttattctattgtagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGGgtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc Alignment from Exonerate_protein2genome GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agtcaagtacactttctcctgctttgcctatttattttattctattgtagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGGgtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc Alignment from Exonerate_coding2genome TCGGCTGCGCACCCAGTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agtcaagtacactttctcctgctttgcctatttatTTTATTCTATTGTAGGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGGgtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc Alignment from GeneWise GTAAAGGCCCCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGGCAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGG agtcaagtacactttctcctgctttgcctatttattttattctattgtagGTAAAGGTCCTGAAACACTGTTTGCAGGGCACAAGCTAAATGACAATGAGTGGCACATGGTGAGGGTGGTCCGGCATGGCAAGAGCCTCCAGCTTTCTGTTGACAATGTGACTGTGGAGGgtaagtggcctagatcgttgctggaagtgccccaaagtctcagctgggtc #### Nrxn2_ID1773_17 --> 2 - 0 Original Alignment ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagcaGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt Alignment from CESAR ctGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagcaGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt Alignment from Spaln_aa2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagCAGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt Alignment from Spaln_nt2Genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagCAGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt Alignment from Pairagon CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagCAGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt Alignment from Exonerate_protein2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagCAGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt Alignment from Exonerate_coding2genome CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagCAGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt Alignment from GeneWise CTGGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCAGTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGACAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATT gagatcccactggcattacttcatctccttgttttgtttttgcctcacagCAGGGACCACATATATCTTCAAGAAGGGGGGAGCACTCATCACCTATACATGGCCTCCCAATGACTGGCCAAGTACCTGGATGGACCGCTTAGCTATAGGGTTCAGCACACACCAGCAGAGTGCTGTGTTGGTACGAGTGGACAGTGCATCTGGGGTTGGGGAATTCTTGCAGTTGCACGTTgtgagtattgcaaagcaggtctgtcttgccacaatctgactagcccagtt #### Nt5c2_ID10039_14 --> 2 - 1 Original Alignment gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt tagtctagtgcttaattggtacatttttcccttaatgacacccctcctaggtTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTtgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc Alignment from CESAR gtTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTt tagtctagtgcttaattggtacatttttcccttaatgacacccctcctaggtTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTtgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc Alignment from Spaln_aa2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgcttaattggtacatttttcccttaatgacacccctcctagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTTgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc Alignment from Spaln_nt2Genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgcttaattggtacatttttcccttaatgacacccctcctagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTTgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc Alignment from Pairagon GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgcttaattggtacatttttcccttaatgacacccctcctagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTTgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc Alignment from Exonerate_protein2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgcttaattggtacatttttcccttaatgacacccctcctagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTTgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc Alignment from Exonerate_coding2genome GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgcttaattggtacatttttcccttaatgacacccctcctagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTTgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc Alignment from GeneWise GTTCATCTGATACAATCTGTGACCTGTTGGGAGCTAAGGGCAAAGACATTTTGTATATTGGAGATCACATTTTTGGAGACATTCTGAAGTCAAAGAAACGGCAAGGGTGGAGGACTTTCTTGGTGATTCCTGAGCTTGCGCAGGAGCTCCACGTCTGGACGGACAAGAGTT tagtctagtgcttaattggtacatttttcccttaatgacacccctcctagGTTCATCTGATACAATCTGTGAGCTGTTGGGTGCTAAGGGCAAAGACATTCTGTATGTCGGAGATCACATATTTGGGGATATTCTGAAGTCAAAGAAACAACAAGGCTGGAGAACATTCTTGGTGATTCCTGAGCTTGCACAGGAGCTCCATGTCTGGGCCGACAAGAGTTgtaagtaacacctgtctcagcctagccttttagctcacccctctaccttc #### Nt5c2_ID10063_2 --> 1 - 2 Original Alignment aATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACcg tccatggctggacaatataacagtgtagccgatgcttctcttcattttagcCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACcggtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact Alignment from CESAR aATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACcg tccatggctggacaatataacagtgtagccgatgcttctcttcattttagcCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACcggtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact Alignment from Spaln_aa2Genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggctggacaatataacagtgtagccgatgcttctcttcattttagCCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACCGgtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact Alignment from Spaln_nt2Genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggctggacaatataacagtgtagccgatgcttctcttcattttagCCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACCGgtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact Alignment from Pairagon AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggctggacaatataacagtgtagccgatgcttctcttcattttagCCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACCGgtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact Alignment from Exonerate_protein2genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggctggacaatataacagtgtagccgatgcttctcttcattttagCCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACCGgtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact Alignment from Exonerate_coding2genome AATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggctggacaatataacagtgtagccgatgcttctcttcattttagCCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACCGgtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact Alignment from GeneWise ATTCATCCTACAAATAAGATGACGACCTCCTGGAGTGACCGCTTACAGAATGCAGCAGATGTGCCTGCTAACATGGATAAGCATGCCTTGAAAAAGTACCGTCGAGAAGCCTATCACCG tccatggctggacaatataacagtgtagccgatgcttctcttcattttagcCTTCACCCTACAAACAAAATGATGACAACCTGGAGTGACCGCTTACAGAATGCTGCAGATGTCCCTGCTAACATGGATAAACATGCGTTGAAAAAGTATCGGCAGGAAGCCTATCACCGgtaactcagcttgacaagatttgtcttgttggggggtgaatatgtacact #### Nudt22_ID1972_3 --> 0 - 2 Original Alignment GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGC---ACCAGTGCAGAGTTCTATGTCcagtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga Alignment from CESAR GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCca aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGC---ACCAGTGCAGAGTTCTATGTCcagtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga Alignment from Spaln_aa2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGC---ACCAGTGCAGAGTTCTATGTCCAgtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga Alignment from Spaln_nt2Genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGCA---CCAGTGCAGAGTTCTATGTCCAgtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga Alignment from Pairagon GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGCA---CCAGTGCAGAGTTCTATGTCCAgtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga Alignment from Exonerate_protein2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGC---ACCAGTGCAGAGTTCTATGTCCAgtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga Alignment from Exonerate_coding2genome GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGC---ACCAGTGCAGAGTTCTATGTCCAgtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga Alignment from GeneWise GTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCA aaacagtagggctcaatgagttgacctgattctgcttcccctttttgcagGTAAACCTTCCACTCCACACCCTTAGCCAGCCACTGTTGTTGGGAATTGCTTGCAATCAGACAAGTGCAGGC---ACCAGTGCAGAGTTCTATGTCCAgtaagtggagacatggtctgggaaggatgctcaacaaagaagggtttaga #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagatTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagatTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccaattctgagacattcctctgtttgtttattttttctagATTTGGTGGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGTATGGCAGCAACCGTCCGCACCATCAAAGAGAATATTCCTGAGgtaagggttctttctctcttttattgtctaaccattctaacttaattaga #### Nxf1_ID2350_10 --> 0 - 2 Original Alignment TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCaggtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa Alignment from CESAR TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCaggtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa Alignment from Spaln_aa2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCAGgtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa Alignment from Spaln_nt2Genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCAGgtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa Alignment from Pairagon TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCAGgtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa Alignment from Exonerate_protein2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCAGgtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa Alignment from Exonerate_coding2genome TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCAGgtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa Alignment from GeneWise TTGAAGACTGAGCGGGAATTAGACAAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttccccgactgcccttctccatccaccagTTAAAGACTGAGCGGAAATTAGAAACAATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTTGGAGACCAGTCCAGCCATATCAGgtagaatccagaattatggaagcaaagtgaagatgaaataagttcaagaa #### Nxf1_ID2360_20 --> 1 - 0 Original Alignment gTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctaggTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc Alignment from CESAR gTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctaggTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc Alignment from Spaln_aa2Genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc Alignment from Spaln_nt2Genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc Alignment from Pairagon GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc Alignment from Exonerate_protein2genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc Alignment from Exonerate_coding2genome GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc Alignment from GeneWise GTGCCTTCAAGACAATAACTGGGACTACACCAGATCTGCTCAGGCCTTCACTCTTCTCAAG tgcatccatattagtccagtgcatgtagttttaaataatttatcttctagGTGCCTTCAAGACAATAATTGGGACTATACCAGATCTGCTCAAGCCTTTACCCTTCTCAAGgtaaggtatttattgcatgaaacagatttatctcttgagcatcttgaacc #### Obfc1_ID10228_7 --> 0 - 0 Original Alignment GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATATA---CACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt Alignment from CESAR GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACAT---ATACACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt Alignment from Spaln_aa2Genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCA---CATATACACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt Alignment from Spaln_nt2Genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATA---TACACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt Alignment from Pairagon GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACATA---TACACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt Alignment from Exonerate_protein2genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCA---CATATACACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt Alignment from Exonerate_coding2genome GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCA---CATATACACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt Alignment from GeneWise GTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCTCTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTAC cttaggttctcaaaggcaagataagagacttctatatctattttttccagGTGGAACTAAAGGACAGCAGCACTTCAGGCATTGCACAGAGAGTGTTTAAAAATGCCCTCCAGCTACTTCATGAAAAAGGCCTTGTTTTCTTGAGAGATGGTGGCTCACAT---ATACACTATgttagtgatctgcacctgatcccacttgaatcccataagctgtctagagt #### Oosp1_ID3264_3 --> 0 - 2 Original Alignment GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACaa cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACaagcaagttgctagatgccatgggtgtgtcttagaagctacctcccccttag Alignment from CESAR GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACaa cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACaagcaagttgctagatgccatgggtgtgtcttagaagctacctcccccttag Alignment from Spaln_aa2Genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACAAgcaagttgctagatgccatgggtgtgtcttagaagctacctcccccttag Alignment from Spaln_nt2Genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACAAgcaagttgctagatgccatgggtgtgtcttagaagctacctcccccttag Alignment from Pairagon GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACAAgcaagttgctagatgccatgggtgtgtcttagaagctacctcccccttag Alignment from Exonerate_protein2genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACAAgcaagttgctagatgccatgggtgtgtcttagaagctacctcccccttag Alignment from Exonerate_coding2genome GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAA cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACAAgcaagttgctagatgccatgggtgtgtcttagaagctacctcccccttag Alignment from GeneWise GTTCTTTGTGATGTCACTCTGCTGAAGACGCAACTTACATACATCTCAAAAAATGCTTCTCTACAAGCTGAGATGAGTTTGTCCTGTGTTATGCACAATCAG cctgatatttgtagcataatcacagaaactgcctttctctctacccacagGTGCTTTGTGATGTCACACTGCTGAAGATGCAGCTCATGTACATCTCAAAAAATACATCTCTGCAGGCAGAAATGAGTTTGACATGCATAATGCACAAGCAAgttgctagatgccatgggtgtgtcttagaagctacctcccccttag #### Opalin_ID8090_5 --> 0 - 0 Original Alignment GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag Alignment from CESAR GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag Alignment from Spaln_aa2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag Alignment from Spaln_nt2Genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag Alignment from Pairagon GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag Alignment from Exonerate_protein2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag Alignment from Exonerate_coding2genome GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag Alignment from GeneWise GAGACTGAGATACCATGTGAAATTTCAGAACTCTATGACAATCCCAAAATATCTGAG gtacagctatatgtcactcttttgcatactggctgtttccatatctgcagGAGACTGAGATACCATGTGAAATTTCAGAGCTATTTGACAATCCTAAAATATCTGAGgtacgtatgtcttaacataacacctcagaaggacctaaagtagggcatag #### Opalin_ID8093_2 --> 0 - 0 Original Alignment AGTTTTTCACTGAACTTTACACTGCCATCGAATACG gttagtaattgttcttgcagatttcactctctgtccacggcttctcctagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtttgtggagtagttggacacactcctatctctagaccagggggtaagta Alignment from CESAR AGTTTTTCACTGAACTTTACACTGCCATCGAATACG gttagtaattgttcttgcagatttcactctctgtccacggcttctcctagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtttgtggagtagttggacacactcctatctctagaccagggggtaagta Alignment from Spaln_aa2Genome AGTTTTTCACTGAACTTTACACTGCCATCGAATACG gttagtaattgttcttgcagatttcactctctgtccacggcttctcctagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtttgtggagtagttggacacactcctatctctagaccagggggtaagta Alignment from Spaln_nt2Genome ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACG gttagtaattgttcttgcagatttcactctctgtccacggcttctccTAGAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtttgtggagtagttggacacactcctatctctagaccagggggtaagta Alignment from Pairagon ATGAGTTTTTCACTGAACTTTACACTGCCATCGAATACG gttagtaattgttcttgcagatttcactctctgtccacggcttctccTAGAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtttgtggagtagttggacacactcctatctctagaccagggggtaagta Alignment from Exonerate_protein2genome AGTTTTTCACTGAACTTTACACTGCCATCGAATACG gttagtaattgttcttgcagatttcactctctgtccacggcttctcctagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAgtttgtggagtagttggacacactcctatctctagaccagggggtaagta Alignment from Exonerate_coding2genome AGTTTTTCACTGAACTTTACACTGCCATCGAATACGACATCCTCTCCAGTT------GTCACGAGTGCCAAAGCCACAG gttagtaattgttcttgcagatttcactctctgtccacggcttctcctagAGTTTTTCACTGAACTTTACACTGCCATCAAATACAGTTTGTGGAGTAGTTGGACACACTCCTATCTCTAGACCAGGGGgtaagta Alignment from GeneWise gttagtaattgttcttgcagatttcactctctgtccacggcttctcctagagtttttcactgaactttacactgccatcaaatacagtttgtggagtagttggacacactcctatctctagaccagggggtaagta #### Osbp_ID3344_3 --> 2 - 0 Original Alignment atGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagacGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag Alignment from CESAR atGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagacGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag Alignment from Spaln_aa2Genome ATGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagACGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag Alignment from Spaln_nt2Genome ATGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagACGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag Alignment from Pairagon ATGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagACGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag Alignment from Exonerate_protein2genome ATGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagACGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag Alignment from Exonerate_coding2genome ATGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagACGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag Alignment from GeneWise ATGACTCAGGAGATGAAGAGTCTGTCTCACAGACTGACAAGACCGAGCTCCAGAGCACCCTGCGAACACTCTCCAGCAAAGTGGAGGACCTCAGCACGTGCAACGACTTGATAGCTAAGCATGGCACCGCCCTGCAGCGTTCCCTCAGTGAGCTGGAGTCCCTGAAGCTGCCTGCTGAGAGCAATGAGAAAATCAAGCAGGTCAATGAACGAGCCACGCTTTTTAGGATAACATCCAATGCCATGATCAAT agactataggaaaataatgacaagtccctttctccctgtctgtatttcagACGACTCAGGGGATGAAGAGTCTGTCTCACAAACTGACAAAACTGAGCTCCAGAGCACCTTGCGAACATTGATAAGCAAAGTTGAGGATGTTAGCACATGCAATGATTTGATAGCTAAACACGGCACAGCCCTCCAACGTTCTCTAAGCGCGCTGGAGTCCCAGAAGCTACCTGCTGAGAGCAATGATAAAATTAAACAGGTAAATGAACGAGCCACACTTTTTAGGATAACCTCTAATGCAATGATCAATgtgtgtagagacagtatctgtgccagttcgtcccagaaagaaggtaacag #### Osbp_ID3345_4 --> 0 - 1 Original Alignment GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATggttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt Alignment from CESAR GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAg tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATggttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt Alignment from Spaln_aa2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt Alignment from Spaln_nt2Genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt Alignment from Pairagon GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt Alignment from Exonerate_protein2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt Alignment from Exonerate_coding2genome GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt Alignment from GeneWise GCTTGCAGAGATTTCCTCATGTTAGCCCAGACACACAGTAAGAAGTGGCAGAAGTCACTACAGTATGAAAGAGACCAGCGAATCCGACTGGAAGAAACTCTTGAGCAGCTGGCAAAGCAGCACAATCACCTGGAGAGAGCCTTCCGGGGAGCCACAGTGCTGCCAGCAAACCCTCCGGGCAGCGCTGGGTCTGGTAAAG tgtaagaagtctgttcgaccactaaggtttttttttatcatttgtattagGCTTGCCGAGATTTCCTCATGCTGGCGCAAACTCACAGCAAGAAGTGGCAAAAGTCACTCCAGTATGAAAGGGAGCAAAGAATCCAACTGGAAGTGACCCTTGAACAACTGGAAAAACAGCATAATCACCTGGAGAGAGGCTTCCGAGGAGCCACAGTACTGCCCGCAAACCCTCCAGGGAGTGCTGGGTCTGGTCATGgttggatacttggtcattgaacagctctgtcatgggagatcaagagggtt #### Osbp_ID3349_8 --> 0 - 0 Original Alignment GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt Alignment from CESAR GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt Alignment from Spaln_aa2Genome GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt Alignment from Spaln_nt2Genome GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt Alignment from Pairagon GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt Alignment from Exonerate_protein2genome GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt Alignment from Exonerate_coding2genome GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt Alignment from GeneWise GTAAACTTTAATGAGCCCTTGTCCATGCTTCAGCGCCTTACTGAAGATCTGGAGTACCATGAGCTGTTAGACAGAGCTGCAAAGTGTGAGAACTCTCTAGAACAGCTCTGCTATGTTGCAGCCTTCACTGTTTCCTCCTATTCCACTACCGTCTTCCGAACCAGCAAGCCATTCAACCCTCTCCTTGGGGAGACATTTGAACTGGACCGACTGGAGGAGAATGGGTATCGGTCCATCTGTGAGCAG ctcccatacctgcatgatatgaggcttaattgtacattgtatcctaccagGTCAACTTCAATGAGAACTTATCCATGCTCCAGCGCCTTACTGAAGATCTGGAGTACCATGAATTATTAGATAGAGCTGCAAAGTGTGAAAATTCCCTAGAACTGCTCTGCTGTGCTGCAGCCCTTACTGTCTCTTCCTATTCCACTACTGTGTTCAGAACCAGCAAGCCATTCAATGCTCTCCATGGTGAGACATTTGAGTTGGAACGATTAGAAGAGAATGGGTATCGCTCTATCTGTAAGCAAgtatgatccataaggtggtattatttttgcctcatctcacatgctacatt #### Ostf1_ID4423_7 --> 2 - 0 Original Alignment acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagacATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct Alignment from CESAR acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagacATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct Alignment from Spaln_aa2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct Alignment from Spaln_nt2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct Alignment from Pairagon ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct Alignment from Exonerate_protein2genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct Alignment from Exonerate_coding2genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct Alignment from GeneWise ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG ctagaaatactccctagaaatactcccaacaaaagcttctcctccctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAAgtaatttgaattataccttgctcatagtattgcttgattacaaactagct #### Ostf1_ID4425_5 --> 2 - 1 Original Alignment tgGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAg accagaccagcacagactactgagcaaaagtattaactttttgtatacagtgGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAggtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc Alignment from CESAR tgGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAg accagaccagcacagactactgagcaaaagtattaactttttgtatacagtgGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAggtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc Alignment from Spaln_aa2Genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG accagaccagcacagactactgagcaaaagtattaactttttgtatacagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAGgtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc Alignment from Spaln_nt2Genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG accagaccagcacagactactgagcaaaagtattaactttttgtatacagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAGgtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc Alignment from Pairagon TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG accagaccagcacagactactgagcaaaagtattaactttttgtatacagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAGgtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc Alignment from Exonerate_protein2genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG accagaccagcacagactactgagcaaaagtattaactttttgtatacagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAGgtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc Alignment from Exonerate_coding2genome TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG accagaccagcacagactactgagcaaaagtattaactttttgtatacagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAGgtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc Alignment from GeneWise TGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAG accagaccagcacagactactgagcaaaagtattaactttttgtatacagTGGCTAAGCAGGCAGAATCCATTGACAACCCATTGCATGAAGCTGCAAAAAGAGgtgagtttcattttcctttctagtagtaaccttctatctcaaacaatttc #### Ostf1_ID4427_3 --> 0 - 0 Original Alignment CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg Alignment from CESAR CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg Alignment from Spaln_aa2Genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg Alignment from Spaln_nt2Genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg Alignment from Pairagon CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg Alignment from Exonerate_protein2genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg Alignment from Exonerate_coding2genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg Alignment from GeneWise CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG gtcaaacggtagtcatttgtgccacgagacatattgccctttcctttcagCCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaacaaattggg #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat #### Ovol1_ID1085_3 --> 0 - 1 Original Alignment GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTggtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat Alignment from CESAR GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTg ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTggtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat Alignment from Spaln_aa2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat Alignment from Spaln_nt2Genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat Alignment from Pairagon GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat Alignment from Exonerate_protein2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat Alignment from Exonerate_coding2genome GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat Alignment from GeneWise GTGACCTTGGGGGACAGTCCAAATGGAGACCTTTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTG ttagttgtgatttttaaaagatatgccattttgttttttcctcttctaagGTGACCTTGGGGGACAGTCCGAATGGAGATCTTTTTACTTGTCACATCTGCCAGAAGTCCTTTACTGATCAGCGCATGCTGAATCGACACATGAAGTGTCACAACGATGTCAAGAGGCACCTCTGCACTTATTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGACATGTCCGAACCCACACTGgtaagttggatggggatgccccttgctcatctgaagcctcagaacccgat #### Pacs1_ID875_19 --> 1 - 0 Original Alignment cCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagcCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtagggactagcctccattgtagtgccttagcatcctactggttaatggt Alignment from CESAR cCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagcCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtagggactagcctccattgtagtgccttagcatcctactggttaatggt Alignment from Spaln_aa2Genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtagggactagcctccattgtagtgccttagcatcctactggttaatggt Alignment from Spaln_nt2Genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtagggactagcctccattgtagtgccttagcatcctactggttaatggt Alignment from Pairagon CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtagggactagcctccattgtagtgccttagcatcctactggttaatggt Alignment from Exonerate_protein2genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtagggactagcctccattgtagtgccttagcatcctactggttaatggt Alignment from Exonerate_coding2genome CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGCGTTGTGAAAGTGGGCCT cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTGTAGGGACTAGCCTCCAttgtagtgccttagcatcctactggttaatggt Alignment from GeneWise CCCTGATGAGGACTCCTACCAGAAGTTCATCCCCTTCATTGGC cttgttgctacgctgtttgagcagactgttgtttcatcttatttttgcagCCCTGATGAGGACTCTTACCAGAAGTTCATCCCCTTCATTGGTgtagggactagcctccattgtagtgccttagcatcctactggttaatggt #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcaggtTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAggtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcaggtTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAggtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG gtgtggtaggaaccaatacttcactcttttcatccggttatgttttgcagGTTCTCATCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCAGAGCCCCTAGTGTCAGgtaagggcccccagtaggaatcttcaaccagtggttctagcccccatcac #### Pacs1_ID880_14 --> 0 - 0 Original Alignment ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATACGAA---CTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc Alignment from CESAR ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATACGAA---CTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc Alignment from Spaln_aa2Genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATACGAA---CTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc Alignment from Spaln_nt2Genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATACG---AACTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc Alignment from Pairagon ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATACG---AACTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc Alignment from Exonerate_protein2genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATAC---GAACTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc Alignment from Exonerate_coding2genome ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATAC---GAACTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc Alignment from GeneWise ATTCCAAGGAAGGTGGTATACGACCAACTGAATCAGATCCTGGTATCGGATGCAGCCCTCCCTGAAAATGTCATCCTGGTGAACACCACAGACTGGCAGGGCCAG cttgttcctgcagatttcaaggattttgattctggcctgcttgtccacagATCCCAAGGAAGGTGGTATAC---GAACTGAACCAGATCTTGGTATCAGATGCAGCTCTCCCTGAAAATGTCATCTTGGTTAACAGCACAGACTGGCAGGGGCAAgtaaggtattgagggtcaagggtgtgactctggatgttctaggcgctgcc #### Pacs1_ID884_10 --> 1 - 0 Original Alignment gCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttaggCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga Alignment from CESAR gCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttaggCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga Alignment from Spaln_aa2Genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttagGCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga Alignment from Spaln_nt2Genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttagGCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga Alignment from Pairagon GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttagGCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga Alignment from Exonerate_protein2genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttagGCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga Alignment from Exonerate_coding2genome GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttagGCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga Alignment from GeneWise GCCCTTCTTTGAGGGGATGTCTCAGTCCAGCTCACAGACGGAGATTGGCAGTCTCAACAGCAAGGGCAGCCTCGGGAAAGACACCACCAGTCCT gggccaagttgcagtcactcctgactgcactaattttaaactttttttagGCCCTTCTTTGAGGGCATGTCACAGTCCAGTTCACAGACAGAGATTGGCAGTCTCAACAGCAAAGGCAGCCTTGGGAAGGACACAACTAGCCCTgtaagttgaatgatggtaaaaatgattaggaaaggaacctccagtgcaga #### Pank1_ID6986_4 --> 1 - 2 Original Alignment tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag agggaacaagtccttgccctggtcacctccctcctctctctccctgctagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAaggtacttatcatctgattcgaagtaagtaaacgtccacacaaatcaggtgc Alignment from CESAR tCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAag agggaacaagtccttgccctggtcacctccctcctctctctccctgctagtCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAaggtacttatcatctgattcgaagtaagtaaacgtccacacaaatcaggtgc Alignment from Spaln_aa2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG agggaacaagtccttgccctggtcacctccctcctctctctccctgctagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacttatcatctgattcgaagtaagtaaacgtccacacaaatcaggtgc Alignment from Spaln_nt2Genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG agggaacaagtccttgccctggtcacctccctcctctctctccctgctagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacttatcatctgattcgaagtaagtaaacgtccacacaaatcaggtgc Alignment from Pairagon TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG agggaacaagtccttgccctggtcacctccctcctctctctccctgctagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacttatcatctgattcgaagtaagtaaacgtccacacaaatcaggtgc Alignment from Exonerate_protein2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG agggaacaagtccttgccctggtcacctccctcctctctctccctgctagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacttatcatctgattcgaagtaagtaaacgtccacacaaatcaggtgc Alignment from Exonerate_coding2genome TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCA agggaacaagtccttgccctggtcacctccctcctctctctccctgctagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGGTACTTATCATCTGATTCGAAGTAAGTAAACGTCCACACAAatcaggtgc Alignment from GeneWise TCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAG agggaacaagtccttgccctggtcacctccctcctctctctccctgctagTCTTGGAGGTGGGACATTCCTAGGCCTATGTTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGTGATAGCACCAATGTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAGCATCAAGgtacttatcatctgattcgaagtaagtaaacgtccacacaaatcaggtgc #### Pank1_ID6988_3 --> 0 - 2 Original Alignment ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCaggtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta Alignment from CESAR ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCag gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCaggtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta Alignment from Spaln_aa2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta Alignment from Spaln_nt2Genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta Alignment from Pairagon ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta Alignment from Exonerate_protein2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta Alignment from Exonerate_coding2genome ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta Alignment from GeneWise ATTGCGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAGCCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAG gtaattaaccttggaaattagacttagctaataactatttccttttttagATCGCGGACCTCCAATTGCATAAACTGGATGAGCTGGACTGCTTGATTCAGGGCCTTCTATATGTTGACTCAGTTGGCTTCAATGGCAAGCCAGAATGTTACTATTTTGAAAACCCAACAAATCTCGAGTTGTGTCAAAAAAAACCATACTGTTTGGATAATCCATACCCCATGTTGCTTGTCAATATGGGCTCAGGTGTCAGCATCCTGGCAGTGTACTCCAAGGACAACTATAAGAGAGTGATGGGGACCAGgtgagaaaaatctcaaccaggagggctccactaagctcatgctaagccta #### Pank1_ID6989_2 --> 2 - 0 Original Alignment caTTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagcaTTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt Alignment from CESAR caTTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagcaTTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt Alignment from Spaln_aa2Genome CATTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagCATTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt Alignment from Spaln_nt2Genome CATTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagCATTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt Alignment from Pairagon CATTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagCATTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt Alignment from Exonerate_protein2genome CATTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagCATTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt Alignment from Exonerate_coding2genome CATTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagCATTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt Alignment from GeneWise CATTCCCGTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCAGAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACGGCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCTGCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCCAGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATG gagggctgtctattgtgtgttgcattcacagactcctctcctttctccagCATTCCCATGGTTTGGTACGGATATTGGTGGCACTCTGGTTAAGCTTGCTTACTTTGAACCTAAAGACATCACAGCAGAGGAAGAACAAGAAGAAGTTGAAAACTTGAAAAGCATCCGGAAATATTTAACTTCTAACACTGCCTATGGCAAAACTGGGATCCGGGATGTCCATTTGGAGCTGAAAAACCTGACAATGTGTGGGCGAAAGGGAAACCTACACTTCATTCGCTTTCCAACATGTGCCATGCACTTGTTCATTGAAAAAGGGAGGCAAAAGAACTTCTCCAGCCTGCACACCACACTATGTGCCACAGGAGGTGGAGCCTTCAGGTTTGAGGAGGACTTCCGCATGgtgagcttaccttgttcatccttggacagccagctctcgcattcagatgt #### Papss2_ID6717_11 --> 0 - 2 Original Alignment GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAag atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAaggtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat Alignment from CESAR GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAag atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAaggtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat Alignment from Spaln_aa2Genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat Alignment from Spaln_nt2Genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat Alignment from Pairagon GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat Alignment from Exonerate_protein2genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat Alignment from Exonerate_coding2genome GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat Alignment from GeneWise GTCCAGTGGCATTGCAGATGCCGGATGATTGCAGGAGCCAATTTCTACATTGTGGGTAGGGATCCCGCAGGAATGCCCCATCCTGAGACAAAGAAAGACCTATATGAACCCACCCACGGGGGCAAGGTCTTGAGTATGGCCCCTGGCCTTACCTCTGTGGAAATAATTCCGTTCCGAGTGGCTGCCTACAATAAAATTAAAAAGGCCATGGACTTTTATGATCCAGCAAG atagatggagactcctgaccatcccatctaggtcctggctcttgttgcagGTGCAGTGGCATTGTAGATGCCGGATGATTGCAGGAGCCAACTTCTACATTGTGGGTAGGGATCCTGCAGGAATGCCCCATCCTGAGACTAAGAAAGACCTATATGAACCTAGCCATGGTGGTAAGGTACTGAGTATGGCTCCTGGCCTTACTTCTGTCAAAATAATTCCATTCCGAGTGGCTGCCTACAATAAAATTAAAAAAGCTATGGATTTTTATGATCCAGCAAGgtaagcgcctggacaatgcaaaagaaaaatatgtctcaatctatcccaat #### Patl1_ID3316_4 --> 0 - 0 Original Alignment CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc Alignment from CESAR CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc Alignment from Spaln_aa2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc Alignment from Spaln_nt2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc Alignment from Pairagon CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc Alignment from Exonerate_protein2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc Alignment from Exonerate_coding2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc Alignment from GeneWise CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTTGCTCAG tcacttggtgcactactattaacatgcatccaactccttccctcttctagCCTCAACCAGGAAGTCTAAATTCCAGTATCTGGGGTGGATCTGAAGGCCTGAGGTGCATCCGTGGACCACTACTTGCTCAGgtatgtgccattgtatttttgcagagagcttttgtctgtattttgttatc #### Patl1_ID3317_5 --> 0 - 0 Original Alignment GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGG---------GACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAG---TCCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTT------CTCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat Alignment from CESAR GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTT---------TCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAG---TCCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTT------CTCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat Alignment from Spaln_aa2Genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGG---------GACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAG---TCCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTT------CTCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat Alignment from Spaln_nt2Genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTTTCTGA---------GCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAGT---CCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTTC------TCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat Alignment from Pairagon GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGGGACCTT---------TCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAGT---CCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTTC------TCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat Alignment from Exonerate_protein2genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGG---------GACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAG---TCCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTT------CTCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat Alignment from Exonerate_coding2genome GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGG---------GACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAG---TCCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTT------CTCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat Alignment from GeneWise GAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAGATGATCGG---------GACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGTTAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAG actgaatattgcaagtaattgcttataacttctgattctctctaatatagGAGATACCTACAGTTTCTGAATTAGAG---TCCTTACCCCAGAGGCCCCTGCAAGGCCCAGAAGATGATCAAGACCTTTCTGACCTGTCTGAGCGTTCTTTACCAAGGAGGTCTACATCACCAATTATTGGAAGTCCTTTGGTCAGAGCAGTTCCTATAGGCATCCCACCTAAGCAAATGGCTGTT------CTCAACCAAAAAgtgagttttgtaaacatacacaggtcagatatactggagagctggactat #### Patl1_ID3323_8 --> 0 - 2 Original Alignment CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCag atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCaagtaagaactattacattgatactgatcatcagtgtactagtgtacacttt Alignment from CESAR CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCag atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCaagtaagaactattacattgatactgatcatcagtgtactagtgtacacttt Alignment from Spaln_aa2Genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCAAgtaagaactattacattgatactgatcatcagtgtactagtgtacacttt Alignment from Spaln_nt2Genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCAAgtaagaactattacattgatactgatcatcagtgtactagtgtacacttt Alignment from Pairagon CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCAAgtaagaactattacattgatactgatcatcagtgtactagtgtacacttt Alignment from Exonerate_protein2genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCAAgtaagaactattacattgatactgatcatcagtgtactagtgtacacttt Alignment from Exonerate_coding2genome CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCAAgtaagaactattacattgatactgatcatcagtgtactagtgtacacttt Alignment from GeneWise CTACAGCCTGGACGAATGTCTCCCAGCCAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGCGCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCCACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAG atctgtgtagttaattgcaagtttttctgtaatgttgtgcttctctctagTTGCAGCCTGGACGGATGTCCCCAAGTCAATTTGCACGGCCTCCTGGATTTGTTGGTAGCCCGTTGGCTGCCATGAACCCTAAATTACTGCAAGGGCACATTGGACAGATGCTTCCTCCAGCACCATGCTTCCGTGCCTTTTTTGGTGCTCCTCCCCCTGCTACTCCACCTCCACAACAACATCCCCCTGGTCCAGGACCACACCTACAGAACATCAAgtaagaactattacattgatactgatcatcagtgtactagtgtacacttt #### Patl1_ID3324_9 --> 1 - 2 Original Alignment aCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaa aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagaCCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaagtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg Alignment from CESAR aCCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaa aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagaCCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAaagtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg Alignment from Spaln_aa2Genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagACCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg Alignment from Spaln_nt2Genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagACCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg Alignment from Pairagon ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagACCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg Alignment from Exonerate_protein2genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagACCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg Alignment from Exonerate_coding2genome ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagACCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg Alignment from GeneWise ACCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAA aagcaaaccatcatgaaactatcaaggacttaccccaccctcttctctagACCTCAGGCCCCAATGTTTAGAGCGGACACCACTCACCTTCACCCACAGCACCAGCGTCTGTTGCATCAGAGGCAGCTGCAGAGCAGAAAgtaagtgactgttactcgtaatatgttagaatgttgtgattcaggtgacg #### Patl1_ID3330_15 --> 1 - 0 Original Alignment gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacaggCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag Alignment from CESAR gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacaggCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag Alignment from Spaln_aa2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag Alignment from Spaln_nt2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag Alignment from Pairagon GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag Alignment from Exonerate_protein2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag Alignment from Exonerate_coding2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag Alignment from GeneWise GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggcctaatcctactttcctcacagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtaagtaacatgtggtgcacttaaagactcttaaaaaaaggccaaaaaag #### Pax2_ID9137_3 --> 1 - 2 Original Alignment gTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACag ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagaTATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACaggtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg Alignment from CESAR gTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACag ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagaTATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACaggtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg Alignment from Spaln_aa2Genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagATATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACAGgtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg Alignment from Spaln_nt2Genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagATATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACAGgtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg Alignment from Pairagon GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagATATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACAGgtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg Alignment from Exonerate_protein2genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagATATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACAGgtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg Alignment from Exonerate_coding2genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagATATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACAGgtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg Alignment from GeneWise GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccgtcatagctcccactggctgttgcttgttctcttctccactgtcacagATATTATGACACTGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTCGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAACTCAACTATGTTTGCATGGGAGATCCGTGATAGGCTTCTAGCTGAAGGCATCTGTGATAATGACACAGTTCCAAGTGTCACATCCATCAACAGgtgagcatgacccccagtagttgatggcctcccagtgtgtcctagtgtgg #### Pax2_ID9186_9 --> 2 - 1 Original Alignment ggAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAa ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagggAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAagtaagaacatgtttggactgacaggccaataaccccacatgttatcagct Alignment from CESAR ggAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAa ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagggAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAagtaagaacatgtttggactgacaggccaataaccccacatgttatcagct Alignment from Spaln_aa2Genome GGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAA ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagGGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAAgtaagaacatgtttggactgacaggccaataaccccacatgttatcagct Alignment from Spaln_nt2Genome GGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAA ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagGGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAAgtaagaacatgtttggactgacaggccaataaccccacatgttatcagct Alignment from Pairagon GGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAA ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagGGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAAgtaagaacatgtttggactgacaggccaataaccccacatgttatcagct Alignment from Exonerate_protein2genome GGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAA ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagGGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAAgtaagaacatgtttggactgacaggccaataaccccacatgttatcagct Alignment from Exonerate_coding2genome GGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAA ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagGGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAAgtaagaacatgtttggactgacaggccaataaccccacatgttatcagct Alignment from GeneWise GGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCCGCCTTACTAA ggccagaagcagctgaatggacatcctgtctgtgtggtttgtcccatcagGGAGCGAGTTCTCAGGCAACCCATACAGCCATCCCCAGTACACCGCCTACAATGAGGCTTGGAGATTCAGCAACCCTGCCTTACTAAgtaagaacatgtttggactgacaggccaataaccccacatgttatcagct #### Pcgf5_ID7128_4 --> 2 - 1 Original Alignment aaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAg tattccatatcattacagttttcagctttcatttgcttattcatttgcagaaGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAggtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa Alignment from CESAR aaGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAg tattccatatcattacagttttcagctttcatttgcttattcatttgcagaaGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAggtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa Alignment from Spaln_aa2Genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattccatatcattacagttttcagctttcatttgcttattcatttgcagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa Alignment from Spaln_nt2Genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattccatatcattacagttttcagctttcatttgcttattcatttgcagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa Alignment from Pairagon AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattccatatcattacagttttcagctttcatttgcttattcatttgcagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa Alignment from Exonerate_protein2genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattccatatcattacagttttcagctttcatttgcttattcatttgcagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa Alignment from Exonerate_coding2genome AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattccatatcattacagttttcagctttcatttgcttattcatttgcagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa Alignment from GeneWise AAGAACTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAAGAAAATGGGCAAG tattccatatcattacagttttcagctttcatttgcttattcatttgcagAAGAGCTTCAGCGTGAGTTGGAATTTTGGAAGAAAAACAAACCTCAGGAAAATGGGCAAGgtgagagtcttataactctgcaccatgggcaggacctgatggagctgaaa #### Pcgf5_ID7129_5 --> 2 - 0 Original Alignment atGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagatGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact Alignment from CESAR atGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagatGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact Alignment from Spaln_aa2Genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagATGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact Alignment from Spaln_nt2Genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagATGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact Alignment from Pairagon ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagATGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact Alignment from Exonerate_protein2genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagATGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact Alignment from Exonerate_coding2genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagATGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact Alignment from GeneWise ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcatcttccaaacctgaattgctcacctcccacatcgtccacagATGATATTTCAAAGGTTGATAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATTTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaagttggcggaatgtcttccataatcatgaaggtgaaaaggttgaact #### Pcgf5_ID7130_6 --> 0 - 0 Original Alignment GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt Alignment from CESAR GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt Alignment from Spaln_aa2Genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt Alignment from Spaln_nt2Genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt Alignment from Pairagon GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt Alignment from Exonerate_protein2genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt Alignment from Exonerate_coding2genome GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt Alignment from GeneWise GGTCTCATGAAGAAATTTATTCGCTGTTCTACACGAGTTACTGTAGGAACTATTAAAAAGTTTCTAAGTTTAAAACTAAAACTTCCAAGTTCTTATGAG catgatgggagatgataactattgaagtctaattctctctcctaacgcagGGTCTCATGAAGAAATTTATTCGCTGTTCTACACAAGTTACTGTAGGAACTATTAAAAAGTTTCTGAGTTTAAAACTAAAACTTCCAAGTTCTTATGAGgtgggcgatcatatgtatatatgaaattggtgattctgattgatagtagt #### Pcgf6_ID10078_9 --> 0 - 0 Original Alignment GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa Alignment from CESAR GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa Alignment from Spaln_aa2Genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa Alignment from Spaln_nt2Genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa Alignment from Pairagon GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa Alignment from Exonerate_protein2genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa Alignment from Exonerate_coding2genome GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa Alignment from GeneWise GTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACGTGCAATAGGTGATACAGCAATGCAG aaccatcatattgggttgctatgaatttgcatttcatttccttcttttagGTAGATATCATCTGCGGGGACCACTTACTGGAGCAGTACCAAACTCTGCGGGAAATCCGACGCACTATAGGTGATACAGCAATGCAGgtatctcgcctgatctggacatgttattcaataattaatcctggacataa #### Pcgf6_ID10080_7 --> 1 - 0 Original Alignment tGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagtGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt Alignment from CESAR tGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagtGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt Alignment from Spaln_aa2Genome TGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagTGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt Alignment from Spaln_nt2Genome TGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagTGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt Alignment from Pairagon TGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagTGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt Alignment from Exonerate_protein2genome TGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagTGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt Alignment from Exonerate_coding2genome TGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagTGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt Alignment from GeneWise TGCTAATGAAGACACCGGACATTTTAAG aaacacataactgaagataacgctttgaaatgttgcttatcctttcacagTGCGAATCAAGACACTGGACATTTTAAGgtaagccattgcttttgtctacttgacaagggaatttggtaggccatatt #### Pcgf6_ID10081_6 --> 2 - 2 Original Alignment ctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgg gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTgggtgaggaacctgttttactactcaactcactttttactatattttcagag Alignment from CESAR ctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTgg gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagctGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTgggtgaggaacctgttttactactcaactcactttttactatattttcagag Alignment from Spaln_aa2Genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTGGgtgaggaacctgttttactactcaactcactttttactatattttcagag Alignment from Spaln_nt2Genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTGGgtgaggaacctgttttactactcaactcactttttactatattttcagag Alignment from Pairagon CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTGGgtgaggaacctgttttactactcaactcactttttactatattttcagag Alignment from Exonerate_protein2genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTGGgtgaggaacctgttttactactcaactcactttttactatattttcagag Alignment from Exonerate_coding2genome CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTGGgtgaggaacctgttttactactcaactcactttttactatattttcagag Alignment from GeneWise CTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTCTTTATTACTTGAGTTCATTGG gatactgagtctttgtaatacaccaggtaggctttccctgtctctggcagCTGCTCCACAGCCAGTCCCTTCAAGCAAAGGAAAGACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATCCCACCTGAACTTGATATGTCATTACTACTTGAGTTCATTGGgtgaggaacctgttttactactcaactcactttttactatattttcagag #### Pcnxl3_ID1168_25 --> 1 - 1 Original Alignment cACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagcACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAggtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg Alignment from CESAR cACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagcACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAggtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg Alignment from Spaln_aa2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagCACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAGgtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg Alignment from Spaln_nt2Genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagCACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAGgtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg Alignment from Pairagon CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagCACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAGgtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg Alignment from Exonerate_protein2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagCACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAGgtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg Alignment from Exonerate_coding2genome CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagCACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAGgtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg Alignment from GeneWise CACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG catctccaggatatgggaccagagaggatcacgactgtcttgtcttttagCACTAAACCTGTAGACCACTCTAACACTCGTCTAGTGACACAGCTGGACCGGAACCCAGgtaggttacagcctgcccaggtcttcatagaaaggcaatgggtctacttg #### Pcnxl3_ID1171_22 --> 1 - 0 Original Alignment cTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagcTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca Alignment from CESAR cTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagcTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca Alignment from Spaln_aa2Genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagCTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca Alignment from Spaln_nt2Genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagCTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca Alignment from Pairagon CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagCTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca Alignment from Exonerate_protein2genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagCTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca Alignment from Exonerate_coding2genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagCTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca Alignment from GeneWise CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttatgaaattgtttgtttgttctaattatagCTGCCGAGCTTTGCTGATGACTGTGGTGGGCCTTAAACTGCTGTGCTCAGCATTCTACTGCCCACTGCAGCAGTACTTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTACCTTATATCTTTGCTCTGCAGCAAGgtaagtcaagatatgtttagacccaagcaattaagtagttagactctgca #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag #### Pcnxl3_ID1175_18 --> 1 - 0 Original Alignment gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagattttgctttttaggTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg Alignment from CESAR gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagattttgctttttaggTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg Alignment from Spaln_aa2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagattttgctttttagGTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg Alignment from Spaln_nt2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagattttgctttttagGTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg Alignment from Pairagon GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagattttgctttttagGTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg Alignment from Exonerate_protein2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagattttgctttttagGTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg Alignment from Exonerate_coding2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagattttgctttttagGTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg Alignment from GeneWise GTTCTCTGG------TCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACAGCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG agcatggacattatctgggtgtaaagcaaatacaagATTTTGCTTTTTAGGTCTCTAGTCCAAAGTAAACTTTTCCCGGAGCTAGAAGAGCGGAGCCTAGAGACAGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaaggaggcagcagttgatgagtgtttgcttctatgcagttctagaagg #### Pcnxl3_ID1177_16 --> 2 - 0 Original Alignment ctGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagctGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg Alignment from CESAR ctGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagctGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg Alignment from Spaln_aa2Genome CTGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagCTGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg Alignment from Spaln_nt2Genome CTGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagCTGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg Alignment from Pairagon CTGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagCTGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg Alignment from Exonerate_protein2genome CTGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagCTGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg Alignment from Exonerate_coding2genome CTGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagCTGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg Alignment from GeneWise CTGCCACCAGCCCACTCACTGCGGTCTTCAGCCTCACGCGAAGCCTGCTGGCTGCTGCCCTGCTTTATGGCTTCTGCCTTGGGGCCATCAAG agaccatcagaccatcaagcagtgtttttctgtgtttgtgttcctttcagCTGCCACCAGCCCACTTACTGCAGTCTTCAGCCTCATGCGAAGTCTGTTAGCTGCTGCCCTGCTTTATGGGTTCTGCCTTGGGGCAATCAAGgtaggtatgcctacagaagcttggctaactgagacctgttgagtagatgg #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttaggGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttaggGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Exonerate_coding2genome aacataactgacaagataggaacataatttttgtgttttgtttcacttagggatcctggtatagagacgacagtgtttcagaaagttagttcctcacctcctgtacactgcagtttccagcgttctgaaataggatttaaccatgtgtcggtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg #### Pcsk5_ID4259_22 --> 1 - 1 Original Alignment gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcaggGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTggtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct Alignment from CESAR gGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAg cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcaggGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTggtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct Alignment from Spaln_aa2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTGgtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct Alignment from Spaln_nt2Genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTGgtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct Alignment from Pairagon GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTGgtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct Alignment from Exonerate_protein2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTGgtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct Alignment from Exonerate_coding2genome GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTGgtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct Alignment from GeneWise GGTCTTGGATGATGGTCGCTGTGTTATGAACTGTCCTTCCTGGAAGTTCGAATTTAAGAAGCAATGCCATCCCTGCCACTACACTTGTCAAGGATGCCAAGGTAGTGGCCCTTCCAACTGCACCTCCTGTAGAGCAG cgcagtaagaagtcctcttcgtaaatttttctttttgttctttactgcagGGTATTGGATGATGGTCGCTGTGTCATGAACTGTCATTCCTGGAAGTTTGAGTTTAAGAAGCAATGTCACCCCTGCCATTATACTTGTCAAGGATGTCAAGGTAGTGGCCCTTCAAATTGCACTTCCTGCAAAGCTGgtatggatacttgctacccgctgtgatcttcgtcagaaagaagcactcct #### Pcsk5_ID4269_15 --> 2 - 2 Original Alignment gtCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCag taacttttggtccctgtgacccttttttgtgattccatccactcctgcaggtCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAaggtaggagacaggacactctgtcacatattcctaagtatactaagcacatc Alignment from CESAR gtCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCag taacttttggtccctgtgacccttttttgtgattccatccactcctgcaggtCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAaggtaggagacaggacactctgtcacatattcctaagtatactaagcacatc Alignment from Spaln_aa2Genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG taacttttggtccctgtgacccttttttgtgattccatccactcctgcagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaggagacaggacactctgtcacatattcctaagtatactaagcacatc Alignment from Spaln_nt2Genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG taacttttggtccctgtgacccttttttgtgattccatccactcctgcagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaggagacaggacactctgtcacatattcctaagtatactaagcacatc Alignment from Pairagon GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG taacttttggtccctgtgacccttttttgtgattccatccactcctgcagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaggagacaggacactctgtcacatattcctaagtatactaagcacatc Alignment from Exonerate_protein2genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG taacttttggtccctgtgacccttttttgtgattccatccactcctgcagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaggagacaggacactctgtcacatattcctaagtatactaagcacatc Alignment from Exonerate_coding2genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG taacttttggtccctgtgacccttttttgtgattccatccactcctgcagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaggagacaggacactctgtcacatattcctaagtatactaagcacatc Alignment from GeneWise GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG taacttttggtccctgtgacccttttttgtgattccatccactcctgcagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaggagacaggacactctgtcacatattcctaagtatactaagcacatc #### Pcsk5_ID4271_13 --> 1 - 1 Original Alignment gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagaCTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAggtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac Alignment from CESAR gCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAg aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagaCTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAggtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac Alignment from Spaln_aa2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac Alignment from Spaln_nt2Genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCT---TGTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac Alignment from Pairagon GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac Alignment from Exonerate_protein2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac Alignment from Exonerate_coding2genome GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac Alignment from GeneWise GCTCTTTGATCATTCCATGGAAGGGTTTAAGAACTGGGAGTTCATGACTATTCATTGCTGGGGAGAACGGGCTGCTGGGGACTGGGTCCTCGAAGTTTATGATACGCCATCTCAGCTGAGGAACTTCAAGACTCCAG aatagctaacatgtaggaataggaacaaagcgcaggggtttcttttccagACTCTTTGATCATTCTATGGAAGGGTTTAAGAACTGGGAGTTCATGACAATTCATTGCTGGGCAGAACGAGCTGCAGGGGATTGGGTCCTT---GTTTACGATACACTGTCTCAGCTGAGAAACTTTAAGACCCCAGgtgagtaaccactacacatataaaatcactagtggcgtaaaacaactgac #### Pcsk5_ID4289_9 --> 0 - 2 Original Alignment ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCaagtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac Alignment from CESAR ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCaa ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCaagtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac Alignment from Spaln_aa2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCAAgtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac Alignment from Spaln_nt2Genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCAAgtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac Alignment from Pairagon ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCAAgtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac Alignment from Exonerate_protein2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCAAgtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac Alignment from Exonerate_coding2genome ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCAAgtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac Alignment from GeneWise ATCACTACTGATCTAAGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCCCTGGCCCTAGAAGCCAA ttccactatgtaggatgttctgtccaggtgtgtgtgatttttttttttagATTACTACTGATCTTCGGCAGCGATGCACAGACAATCACACTGGAACATCAGCCTCAGCCCCCATGGCTGCTGGAATCATTGCACTAGCTTTAGAAGCCAAgtgagccttgagccctgaaacaggggtgtttgcaatctacatttgcggac #### Pcsk5_ID4300_7 --> 2 - 0 Original Alignment gtGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcaggtGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCAGATGAA---GGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct Alignment from CESAR gtGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcaggtGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCAGAT---GAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct Alignment from Spaln_aa2Genome GTGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcagGTGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCA---GATGAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct Alignment from Spaln_nt2Genome GTGTGAGAATGCTGGATG---GTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcagGTGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCAGAT---GAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct Alignment from Pairagon GTGTGAGAATGCT---GGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcagGTGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCAGATGAA---GGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct Alignment from Exonerate_protein2genome GTGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcagGTGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCA---GATGAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct Alignment from Exonerate_coding2genome GTGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcagGTGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCA---GATGAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct Alignment from GeneWise GTGTGAGAATGCTGGAT---GGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tagcataaactacttggataactaacacaccactcttttcctgtttgcagGTGTGAGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCTAGCTGGGGGCCAGATGAA---GGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtaagcggtcagagcaactggggtgagtttacttgaaggactcataatct #### Pcsk5_ID4301_6 --> 1 - 1 Original Alignment gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg taggagtggggattgaggttcttatatctcatgtttgtttttttctgaaggCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAggtaaaggatccttccagggtcatacctgtttagtaggacacattaatata Alignment from CESAR gCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAg taggagtggggattgaggttcttatatctcatgtttgtttttttctgaaggCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAggtaaaggatccttccagggtcatacctgtttagtaggacacattaatata Alignment from Spaln_aa2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG taggagtggggattgaggttcttatatctcatgtttgtttttttctgaagGCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAGgtaaaggatccttccagggtcatacctgtttagtaggacacattaatata Alignment from Spaln_nt2Genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG taggagtggggattgaggttcttatatctcatgtttgtttttttctgaagGCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAGgtaaaggatccttccagggtcatacctgtttagtaggacacattaatata Alignment from Pairagon GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG taggagtggggattgaggttcttatatctcatgtttgtttttttctgaagGCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAGgtaaaggatccttccagggtcatacctgtttagtaggacacattaatata Alignment from Exonerate_protein2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG taggagtggggattgaggttcttatatctcatgtttgtttttttctgaagGCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAGgtaaaggatccttccagggtcatacctgtttagtaggacacattaatata Alignment from Exonerate_coding2genome GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG taggagtggggattgaggttcttatatctcatgtttgtttttttctgaagGCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAGgtaaaggatccttccagggtcatacctgtttagtaggacacattaatata Alignment from GeneWise GCATGGGACCCGCTGTGCCGGAGAAGTGGCAGCCACTGCAAACAACTCTCACTGCACTGTCGGGATCGCTTTCAACGCCAAGATTGGAG taggagtggggattgaggttcttatatctcatgtttgtttttttctgaagGCATGGGACCTGCTGTGCTAGAGAAGTGGCAGCTACTGCAAACAACTCTCACTGCCCTGTCAGGATCACATTCAATGCCAAGATAGGAGgtaaaggatccttccagggtcatacctgtttagtaggacacattaatata #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccaggtGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccaggtGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from Exonerate_coding2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggcaagaaagtacaggcattctgctttttccttcactttatccagGTGCTCCAGTGGTTCCTGGAACAGAGTCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTACGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGTCATGGTATGAGGGTTGTGCAGAGCTATGAGgtaggtggagcagcatatgtactatagcctctgtggtaagctagcagcaa #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacaggaCATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAggtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacaggaCATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAggtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagcaGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCAT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagcaGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCAT------AGACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATA------GACTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tcctactatttgtgtacaatcaacttcagtgatcttatttttgtttttagCAGTACCCCTGGAGCGTGTATTTGACTATAGCGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCTGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACGAATCTACATTTCCCAGCCCATAGA------CTTGGTTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtaagctggagtgccaggtgttcggcaattatctctggtgcttgcctgac #### Pdcd11_ID10115_9 --> 0 - 2 Original Alignment GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGaagtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa Alignment from CESAR GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGaa caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGaagtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa Alignment from Spaln_aa2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa Alignment from Spaln_nt2Genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa Alignment from Pairagon GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa Alignment from Exonerate_protein2genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa Alignment from Exonerate_coding2genome GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa Alignment from GeneWise GTCAGCCATCTCTCTGATTCTAAGAAAGCATTCAACGCTGAGGCCTTCAAACCGGGGAGCACTCACAAGTGTAGAATCATTGACTACAGCCAGATGGATGAGCTGGCCTTGCTCTCTCTGCGGAA caacatcctagcagatgagtagctttaccatcatgctgtcttgattctagGTAAGCCATCTCTCTGATTCTAAAAAAGCATTCAATGCTGAGGCCCTCAAACCAGGGAGCACTCATGAGTGTAGGATCATTGACTATAGCCAGATGGATGAGCTGGCCTTGCTCTCACTGCGGAAgtaatagccattcacacacacatgcacatgcatttctgcagtgcccctaa #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from CESAR aTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagaTCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Pairagon ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from Exonerate_coding2genome ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACAGTAGTAAAGgcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag Alignment from GeneWise ATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG aacagccctatccatgcaccctgtagtcaattcacaatctctgtccccagATCAATTATTGCAGCTCCATTCCTTAGATATCATGACATCAAAATAGGAACA------GTAgtaaaggcaagaacagcatattcttttgagaaacacattagctgttagcttgtaag #### Pdcd11_ID10124_18 --> 2 - 0 Original Alignment ggCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctaggtCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat Alignment from CESAR ggCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctaggtCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat Alignment from Spaln_aa2Genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctagGTCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat Alignment from Spaln_nt2Genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctagGTCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat Alignment from Pairagon GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctagGTCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat Alignment from Exonerate_protein2genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctagGTCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat Alignment from Exonerate_coding2genome GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctagGTCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat Alignment from GeneWise GGCAGGAGGTGGAGCCTGGACAGAAGAAGAAGGTCGTGGTTCTACACGTGGACATGTTGAAGTTGGAGGTCCACGTCTCCCTTCACCAGGACTTGGTGAACAGGAAAACGAGAAAG taccttcacccattgtgaggctcagccttgccccttgggttgtgttctagGTCAAGAGGTGGAACCCGGACAGAAAAAGGAAGTGGTGGTGCTACAAGTTGACATGTTGAAGTTGGAGGTACATGTATCCCTTCACCAAGACCTGGTGAACAGGAAAACAAGAAAAgtaagatcacatctataccctatgctgtattgctctcaccactcagaaat #### Pdcd11_ID10133_27 --> 1 - 2 Original Alignment cCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGcg acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagcCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGcagtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct Alignment from CESAR cCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGcg acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagcCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGcagtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct Alignment from Spaln_aa2Genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagCCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGCAgtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct Alignment from Spaln_nt2Genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagCCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGCAgtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct Alignment from Pairagon CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagCCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGCAgtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct Alignment from Exonerate_protein2genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagCCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGCAgtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct Alignment from Exonerate_coding2genome CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagCCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGCAgtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct Alignment from GeneWise CCTTGGACCTTCAGTTCTGGGTTTGGCCAAGTATTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAGCTTTATAACGGATGCCTCCCTGAGGGAAAGCTGGTCACTGCCAAGGTCCTGCG acgcctgtgctgaatttgttactacaaattttctctaatttttgctttagCCTCAGCCCTTCAGTTTTAGGATTGGCTAAATACTCACATGTCTCTGAGTGTGTCCCACCAGAGAAAGAACTATATAATGGGTGCCTACCTGAGGGCAAATTGGTCACTGCCAAGGTCCTGCAgtgagtgccactctggttgctccatcagccaccttgtgtagattgttcct #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctacgggtggggggaagctccccattgactgtcccttctgttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagctttacggggtgtactgggggacaactttagtcaagagctccttg #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAAcgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAAcgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC ctaatgcgagtaatgtgctaagcagggggcccacttgtctctccccacagGAAGCTGGAGAGCTGTATAACCGAATGATCAAACGGTTCCAGCAGGAGGAGGCTGTCTGTATCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTGAGTCACTATGTCCTACAGCGAGCACCAGAGTGCTTGCCGGCCAAAGAACgtaagctcttttgctggcacctgatcccacccaattcgttacatatctag #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTccgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTccgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa #### Pde6c_ID7537_7 --> 1 - 0 Original Alignment gTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctaggTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt Alignment from CESAR gTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctaggTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt Alignment from Spaln_aa2Genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctagGTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt Alignment from Spaln_nt2Genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctagGTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt Alignment from Pairagon GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctagGTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt Alignment from Exonerate_protein2genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctagGTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt Alignment from Exonerate_coding2genome GTCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctagGTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt Alignment from GeneWise -TCACCTCCAGCAGACCACTGGACGCTTGTTAGTGGATTGCCAACATACGTTGCAGAAAATGGATTT ctttctatgtcccaatgatataattatgtgctatcccttctgtcccctagGTCGCCACCAGCTGACCACTGGACGCTCATTAGTGGATTGCCATCCTATGTTGCGGAAAATGGGTTTgtaagccattacccaaactcaaataataattaaccatggatgcaatactt #### Pde6c_ID7538_8 --> 0 - 0 Original Alignment ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from CESAR ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Spaln_aa2Genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Spaln_nt2Genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Pairagon ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Exonerate_protein2genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from Exonerate_coding2genome ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac Alignment from GeneWise ATCTGTAACATGCTGAATGCCCCTGCAGATGAGTACTTCACATTTCAG caccagtaaccttaacatgtctcagtatcttttccttcgttttttaatagATTTGTAACATGCTCAATGCCCCTGCAGATCAATACTTCACATTTCAGgtagtccttgccaagtgccctgcctgaaccctcagggcaaggagtaagac #### Pde6c_ID7539_9 --> 0 - 0 Original Alignment AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg Alignment from CESAR AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg Alignment from Spaln_aa2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg Alignment from Spaln_nt2Genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg Alignment from Pairagon AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg Alignment from Exonerate_protein2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg Alignment from Exonerate_coding2genome AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg Alignment from GeneWise AAAGGACCGGTAGATGAGACTGGCTGGGTCATTAAAAATGTCTTGTCCCTGCCTATTGTCAACAAGAAAGAAGACATCGTGGGTGTAGCTACGTTTTACAACCGGAAGGATGGGAAACCCTTTGATGAGCATGATGAACATATCACTGAG aagattcaatggtgatgacactaaataaaactctttttcttctattttagAAAGGTTCAGTGGATGAGACAGGCTGGGTCATTAAAAATGTTTTGTCGCTACCTATTGTCAATAAGAAAGAAGACATTGTGGGCGTAGCTACATTTTACAACCGGAAGGATGGGAAGCCTTTTGATGAGCATGATGAACATATCACTGAGgtaagtgagaaaagacagcaggtgtggctgtgcatatcataaagcaactg #### Pde6c_ID7541_11 --> 0 - 0 Original Alignment AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta Alignment from CESAR AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta Alignment from Spaln_aa2Genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta Alignment from Spaln_nt2Genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta Alignment from Pairagon AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta Alignment from Exonerate_protein2genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta Alignment from Exonerate_coding2genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta Alignment from GeneWise AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtagtcatttgttgtgcctctatttatcctctcatttcttcctacacagAGGTTTAAAGAGAAGTTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATATTGgtatgagattctttctttctgatatgtatgtttcctcatcgtttccctta #### Pde6c_ID7542_12 --> 0 - 0 Original Alignment AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta Alignment from CESAR AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta Alignment from Spaln_aa2Genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta Alignment from Spaln_nt2Genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta Alignment from Pairagon AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta Alignment from Exonerate_protein2genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta Alignment from Exonerate_coding2genome AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta Alignment from GeneWise AAGGAGGACTTGCCGGACCCGAGAACAGCAGACCTGTACGAGTTCTGTTTCAGCGACTTCCCCATTACGGAGCACGAGTTGGTTAAATGCGGGCTGAGGCTGTTTTTGGAGATAAACGTGGTGGAGAAATTCAAAGTCCCTGTAGAG tgattataggttatgtataatttgaaatcattcttcctttgctctcttagAAGGAGGACTGGCCGGACCCAAGAACAGCGGATCTGTATGAATTCTGCTTCACTGACTTCCCTATAACAGAGCATGAGTTAGTCAAATGTGGACTGACCCTGTTTTTGGAGATAAATGTTGTGGAGAAATTCAAAGTCCCTGTGGAGgtaagatttctctaaaggctgctgtctctgttgtttggcactcaagatta #### Pde6c_ID7551_21 --> 0 - 1 Original Alignment GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAg cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGggtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat Alignment from CESAR GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAg cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGggtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat Alignment from Spaln_aa2Genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGGgtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat Alignment from Spaln_nt2Genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGGgtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat Alignment from Pairagon GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGGgtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat Alignment from Exonerate_protein2genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGGgtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat Alignment from Exonerate_coding2genome GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGGgtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat Alignment from GeneWise GAGTTCTCTCGGTTTCATGGAGAGATCACACCCATGCTGAACGGCCTTCAGAATAACAGGGTGGAATGGAAATCCCTGGCGGAGGAGTACGAGGCGAAGGTGAAGGTGACTGAAGAAGAGGCGGGAAAGCAGGAAGAAGAAGCCTCAGATGGAAAAG cctcccccaatgtcaggcaacaaactgaatttgcttcctgctctgtccagGAATTCTCTCGGTTTCATGGAGAAATCACACCAATGCTGAATGGCCTGAAGAATAACAGGGTGGAATGGAGGTCTCTAGCACAGGCATATGAGGCAAGGGTGAAGGTAACAGAAGCAGGGACAGGAAGGCAGGATGAAGAGGCTTCAGATGGAAAGGgtgagttgggcaatgtaggggttagaatgagggttaacagaagcacaaat #### Pdlim1_ID7884_5 --> 1 - 1 Original Alignment cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg accaggacttttcactttcatccttagttttgaattgaacttttctgcagtGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAggtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat Alignment from CESAR cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg accaggacttttcactttcatccttagttttgaattgaacttttctgcagtGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAggtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat Alignment from Spaln_aa2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactttcatccttagttttgaattgaacttttctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat Alignment from Spaln_nt2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactttcatccttagttttgaattgaacttttctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACA---------AGGAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat Alignment from Pairagon CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactttcatccttagttttgaattgaacttttctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACA---------AGGAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat Alignment from Exonerate_protein2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactttcatccttagttttgaattgaacttttctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat Alignment from Exonerate_coding2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactttcatccttagttttgaattgaacttttctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat Alignment from GeneWise CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG accaggacttttcactttcatccttagttttgaattgaacttttctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTTTACAAG---------GAGAAGCAGGAATTGAATGAGCCCCCCAAACAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtatgctaatggtagataaaatctgcttgtccagaaccagaaaccaacat #### Pdlim1_ID7886_4 --> 0 - 2 Original Alignment GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGcc acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATC---TATTTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGccgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat Alignment from CESAR GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGcc acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATCTAT---TTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGccgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat Alignment from Spaln_aa2Genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATC---TATTTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGCCgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat Alignment from Spaln_nt2Genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATCT---ATTTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGCCgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat Alignment from Pairagon GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATCT---ATTTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGCCgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat Alignment from Exonerate_protein2genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATC---TATTTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGCCgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat Alignment from Exonerate_coding2genome GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATC---TATTTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGCCgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat Alignment from GeneWise GAAGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCATTTACTGCCTCACCTGCTCCCAGCACCCGGGTCATCACAAACCAGTACAACAGCCCAACTGGCCTCTACTCATCCGAAAACATCTCTAACTTCAACAATGCTGTGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGAACAGCAGGCC acaggtcacattttttgggctctggggctctatctcattaatcttcttagGAAGTCCTGCACGTAGGGAGTGCCCATAACCGTAGTTCCATGCAATTTACTGCCTCACCCGCTCCCAGCACCCGTGTCATAACAAACCAGTACAACAGCCCAACTGGCCTATACTCCTCTGAAAACATC---TATTTCAATAATGCTGTGGAGTCAAAGACCTCAGCCAGTGGGGAGGAGGCAAACAGCAGGCCgtacttagaacagagatgccaaccacagtcttagcagttatgattgctat #### Pdzd8_ID12954_3 --> 1 - 0 Original Alignment gTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagaTTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat Alignment from CESAR gTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagaTTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat Alignment from Spaln_aa2Genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagATTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat Alignment from Spaln_nt2Genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagATTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat Alignment from Pairagon GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagATTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat Alignment from Exonerate_protein2genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagATTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat Alignment from Exonerate_coding2genome GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagATTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat Alignment from GeneWise GTTATTCATTTTTGGATCCTATGACAGAGAAACAAATGTTCATTGCACACTTGAGCTGAGCAGTGGTGTTTGGGAAGAAAAACAAAGGAGTTCTATTAAGACG taacatttattgatacaatttgcataatgggcctttctttttctcctcagATTATTCATTTTTGGATCGTATGACAGAGAAACTAATGTTCGCTGTACACTCGAGCTGAGCAGTGGCGTTTGGGAAGAAAAACAAAGGAGTTCTATAAAGACAgtaaaatgcatggttacacccttcaagatgtgatatgcagcttgtgatat #### Peli3_ID757_5 --> 0 - 0 Original Alignment GAG------CGGGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa Alignment from CESAR GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa Alignment from Spaln_aa2Genome GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa Alignment from Spaln_nt2Genome GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa Alignment from Pairagon GAGCG------GGCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa Alignment from Exonerate_protein2genome GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa Alignment from Exonerate_coding2genome GAGCGG------GCAGCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa Alignment from GeneWise GAGCGGGCA------GCCAAATGGAGGACTCCGGATGGTCTGATGGACGGCTTGACAACCAATGGGGTTCTGGTGATGCACCCAGCAGGTGGCTTCTCCGAGGACTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCTGCGGGAATGTGTACACGCTGCGGGATAGCCGATCAGCTCAGCAGCGGGGGAAGCTG atcatgtaacattcttttggaaagcccagtcatgtttattgtcccatcagGAGCGAGCACAAGCAGCCAAATGGAGAACTCCAGATGGTCTAATGGATGGCTTGACAACCAATGGGGGGCTGGTGATGCGCCCCGCAGGAGGCTTCTCCAAGGATTCTGCCCCAGGTGTCTGGAGGGAGATTTCTGTCCGTGGCAATGTATACACACTGCGTGATAGTCGATCAGCTCAGCAGCGGGGGAGGCTGgtgagcggactccggcatttcgattttgtctgcccaccaccgacagcaaa #### Peli3_ID758_4 --> 0 - 0 Original Alignment ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg Alignment from CESAR ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg Alignment from Spaln_aa2Genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg Alignment from Spaln_nt2Genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg Alignment from Pairagon ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg Alignment from Exonerate_protein2genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg Alignment from Exonerate_coding2genome ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg Alignment from GeneWise ATTGGCCGCTCTACTGAAAACATGATTGACTTTGTGGTAACAGACACATCTCCTGGTGGAGGGGCTACAGAGGGCCCTTCTGCCCAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTCTGTGACCGCCGGCCACCCTATACTGCCCGAATCTACGCTGCTGGCTTTGATGCCTCTAGCAACATCTTTCTTGGA ggtgggaacatagtgaaatttgcctgtgatgtctgcattgtgtctcacagATTGGCCACTCTACTGAAACTATGATCGACTTTGTGGTGACAGACACATCCCCTGGTGGAGGAGCTACAGAGGGCCCTTCTGCACAAAGTACCATCTCCCGCTATGCCTGCAGAATTCTTTGTGACCGACGGCCACCCTATACTGCCCGAATCTACACTGCTGGCTTTGATGCCTGCAGCAACATATTTCTTGGTgtaagtgatggccctctatgctgcaagcacatcaacaaacagctgatggg #### Pga5_ID2972_6 --> 1 - 2 Original Alignment cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag acacacactttgaactcttccagagatttcttgtctttgctcccatgcagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATaggtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac Alignment from CESAR cAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATag acacacactttgaactcttccagagatttcttgtctttgctcccatgcagtAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATaggtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac Alignment from Spaln_aa2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acacacactttgaactcttccagagatttcttgtctttgctcccatgcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATAGgtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac Alignment from Spaln_nt2Genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acacacactttgaactcttccagagatttcttgtctttgctcccatgcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATAGgtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac Alignment from Pairagon CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acacacactttgaactcttccagagatttcttgtctttgctcccatgcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATAGgtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac Alignment from Exonerate_protein2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acacacactttgaactcttccagagatttcttgtctttgctcccatgcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATAGgtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac Alignment from Exonerate_coding2genome CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acacacactttgaactcttccagagatttcttgtctttgctcccatgcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATAGgtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac Alignment from GeneWise CAAGGATGAAAAGGGCAGCATGCTGATGCTAGGTGGAGTGGATCCCTCCTACTACCATGGAGAGCTTCACTGGGTACCAGTGTCCAAGCCCAGCTACTGGCAATTAGCTGTGGATAG acacacactttgaactcttccagagatttcttgtctttgctcccatgcagTAAGGATGAAAAGGGCAGCATGTTAATGTTAGGAGGAGTAGATCCCTCCTACTACCATGGAGAACTTCACTGGGTACCTGTCTCCAAGCCCAGCTACTGGCAGTTAGCTGTGGATAGgtaagacatggatgcttcttgccctcaggccctatctcggcaatgtgcac #### Pga5_ID2975_3 --> 0 - 1 Original Alignment CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCg ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTggtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc Alignment from CESAR CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCg ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTggtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc Alignment from Spaln_aa2Genome CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCG ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTGgtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc Alignment from Spaln_nt2Genome CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCG ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTGgtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc Alignment from Pairagon CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCG ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTGgtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc Alignment from Exonerate_protein2genome CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCG ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTGgtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc Alignment from Exonerate_coding2genome CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCG ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTGgtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc Alignment from GeneWise CTGGTCTACATTGGCATCATCAGCATTGGCACGCCCCCTCAGGAGTTCAGGGTTGTCTTGGATACTGGATCTTCAGTCCTGTGGGTACCATCCATCTATTGCTCCAGCCCAGCCTGCG ggggacaaacaatgcattcagtttaatgttcttcctctggtgatccctagGTGGTTTACATTGGAATTATCAGTATTGGCACACCCTCTCAGCAGTTCAGGGTTGTATTAGATACTGGAATTTCTGTCCTGTGGGTGCCATCTGTCTATGGCTCTAGCCCGGCCTGTGgtaagcactttgtccaaatcagtaatatgcacacacccaaagctcacccc #### Pi4k2a_ID8400_3 --> 0 - 0 Original Alignment GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc Alignment from CESAR GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc Alignment from Spaln_aa2Genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc Alignment from Spaln_nt2Genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc Alignment from Pairagon GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc Alignment from Exonerate_protein2genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc Alignment from Exonerate_coding2genome GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc Alignment from GeneWise GTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGGGGCAAGCGGCTTGCACTAGAGAAAGTGCCAAAAGTTGGGCAGCGGTTTAACCGAATCGGCCTGCCACCAAAG atattcttatgcattagttagcttttgcgttacttctgtctctgctccagGTAGTATACCTGGCCAGTGAAACCTTCAACTACAGTGCCATTGATCGAGTAAAGTCCAGAGGCAAGCGGCTTGCGCTAGAGAAAGTGCCAAAGGTTGGGCAACGGTTCAACCGAATCGGCCTGCCACCAAAAgtgagaagtggacctataggttgatgaaatggccatatagttctagcggc #### Pik3ap1_ID8155_14 --> 2 - 1 Original Alignment acCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAa caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagatCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAagtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag Alignment from CESAR acCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAa caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagatCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAagtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag Alignment from Spaln_aa2Genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagATCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAAgtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag Alignment from Spaln_nt2Genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagATCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAAgtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag Alignment from Pairagon ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagATCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAAgtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag Alignment from Exonerate_protein2genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagATCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAAgtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag Alignment from Exonerate_coding2genome ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagATCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAAgtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag Alignment from GeneWise ACCTGGAGATCACAGTCCCAATCCGACATTCACAGCACCTGCCAGAGAAAGTGGAGTTTGGCGTGTATGAGAGCGGCCCCAGGAAGAGTGTCTTGCCGGCCAGGACAGAGCTGAGACGTGGGGACTGGAAAACGGACAGCATGTCCAGCACAGCAA caagttaggaaatagtttgacgatcagcgccccgtctccctctggtccagATCTGGAGATCACAGTCTCCATCAGACATTCACAGTACCTGCCAGAGAAAGTGGAATTTGGTGTGTATGAGAGTGGCCCAAGGAAGAGTGTCTTGCCAGCTAGAACAGAGCTGAGACGTGGGGATTGGAAGATGGACAGCATGTCCACCACAGCAAgtaagtaggaagccttagcacgctcctatgagggtgagccaggataccag #### Pik3ap1_ID8156_13 --> 0 - 1 Original Alignment GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAg aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAggtaaatggccacaataccataccaagctgtgatccctcattccttaatgg Alignment from CESAR GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAg aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAggtaaatggccacaataccataccaagctgtgatccctcattccttaatgg Alignment from Spaln_aa2Genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaatggccacaataccataccaagctgtgatccctcattccttaatgg Alignment from Spaln_nt2Genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaatggccacaataccataccaagctgtgatccctcattccttaatgg Alignment from Pairagon GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaatggccacaataccataccaagctgtgatccctcattccttaatgg Alignment from Exonerate_protein2genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaatggccacaataccataccaagctgtgatccctcattccttaatgg Alignment from Exonerate_coding2genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaatggccacaataccataccaagctgtgatccctcattccttaatgg Alignment from GeneWise GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aaggtcatcaacctgtatgatactgaggtgatttcccccttctgatttagGAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtaaatggccacaataccataccaagctgtgatccctcattccttaatgg #### Pik3ap1_ID8157_12 --> 2 - 0 Original Alignment agCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACC---CCGGGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGA------TCCGAG---------TCCTTCCGCTTCCAGCAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagagCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCTTCCAGTTCAAACAGgtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa Alignment from CESAR agCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACC---CCGGGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGATCCGAG---------------TCCTTCCGCTTCCAGCAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagagCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCTTCCAGTTCAAACAGgtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa Alignment from Spaln_aa2Genome AGCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACC---CCGGGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGATCCGAG---------------TCCTTCCGCTTCCAGCAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagAGCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCTTCCAGTTCAAACAGgtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa Alignment from Spaln_nt2Genome AGCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACCCCG---GGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGATCCGA------GTCCTTCCG---CTTCCAG------CAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagAGCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCTTCCAGTTCAAACAGgtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa Alignment from Pairagon AGCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACC---CCGGGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGATCCG---------------AGTCCTTCCGCTTCCAGCAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagAGCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCTTCCAGTTCAAACAGgtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa Alignment from Exonerate_protein2genome AGCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACC---CCGGGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGATCCGAGTCCTTCCGCTTCCAGCAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagAGCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCttccagttcaaacaggtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa Alignment from Exonerate_coding2genome AGCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACC---CCGGGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGATCCGAGTCCTTCCGCTTCCAGCAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagAGCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCttccagttcaaacaggtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa Alignment from GeneWise AGCCACTTGTGAGGCCATGGAGGGACAGGCCGCCATCGAGCATCTACGACCCATTTGCTGGAATGAAGACCCCG---GGCCAGCGGCAGCTCATCACCCTGCAGGAGCAGGTGAAGCTGGGCATCGTCAACGTGGACGAGGCCGTGCTGCATTTCAAAGAGTGGCAACTCAATCAGAAGAAGCGATCCGAG---------------TCCTTCCGCTTCCAGCAG ctcacacaggtatgttttatttgctattcccacacttgtttcttactaagAGCCACTTGTGAGGCCATGGCAGGAAAGGCCACCATCTAGCATCTACGATCCATTTGCTGGAATGAAAACCCCTCCAGGACAGAGACAGCTCATCACCCTTCAGGAGCAGGTGAAGCTGGGCATCGTCAATGTGGATGAGGCTGTGCTACACTTCAAGAAATGGCAACTGAATCAGAAGAAGCGATCTGAATCAGAGTCCTTCCAGTCCTTCCAGTTCAAACAGgtatgtggtcctgaatgacgcccttccctacctctgattcctagtccaaa #### Pik3ap1_ID8160_9 --> 2 - 1 Original Alignment atGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAg gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagatGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGggtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg Alignment from CESAR atGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAg gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagatGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGggtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg Alignment from Spaln_aa2Genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagATGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGGgtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg Alignment from Spaln_nt2Genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagATGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGGgtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg Alignment from Pairagon ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagATGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGGgtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg Alignment from Exonerate_protein2genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagATGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGGgtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg Alignment from Exonerate_coding2genome ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagATGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGGgtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg Alignment from GeneWise ATGTTGAAATGCTTCAGGCCAGTGCAGGTAACCCAGTCTCGGGAGAAAGTTTCTCTCGGCCCACTAAAGACTCGATGATCCGCAAGTTTCTAGAAG gcagtgtcttctgtgatatgacaaccttttgttccctcgtgtcttggcagATGGTGAGATGCTTCAGGCCAGTGCAGGTAACCCAGTTTCGGGGGAAAGCTTTTCCCGACCCACCAAAGACTCAATGATTCGCAAGTTTCTGGAGGgtaagccatcattaattagggaagcaagaaattttgagttcaaggggctg #### Pik3ap1_ID8166_3 --> 2 - 0 Original Alignment atTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagatTCTGGCTGTGACTCAGTAACCGACACAGAGCCA---GACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag Alignment from CESAR atTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagatTCTGGCTGTGACTCAGTAACCGACACAGAGCCA---GACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag Alignment from Spaln_aa2Genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagATTCTGGCTGTGACTCAGTAACCGACACAGAGCCA---GACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag Alignment from Spaln_nt2Genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagATTCTGGCTGTGACTCAGTAACCGACACAGAGCC---AGACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag Alignment from Pairagon ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagATTCTGGCTGTGACTCAGTAACCGACACAGAGCC---AGACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag Alignment from Exonerate_protein2genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagATTCTGGCTGTGACTCAGTAACCGACACAGAGCCA---GACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag Alignment from Exonerate_coding2genome ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagATTCTGGCTGTGACTCAGTAACCGACACAGAGCCA---GACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag Alignment from GeneWise ATTCTGGCTGTGACTCAGTAACCGACACGGAGCCCGAGGACGAGAGAGAGCTTCCTTTCTCAAAGCAGACAAACCTGCCTCCGGAGATATCGCCTGGGAACCTGATGGTGGTACAGCCGGACCGCATTCGCTGTGGG ctagctgtgctatcccctgctcccatgtgatgcttctgttccatccacagATTCTGGCTGTGACTCAGTAACCGACACAGAGCCA---GACGAGAAAGGGCTCCCATTCTCAAAGCTAACAAATTTGCCTCCAGAGACATCAGCTGGGAACTTAATGGTTGTTCAGCCTGATCGCATTCGCTCTGGTgtaggtctggttatccagtgcatcaaccatcagggcatcaacttcccaag #### Pitpnm1_ID305_2 --> 0 - 2 Original Alignment AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACAcg tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACAcggtaattgtgttaaaatacataaacttgagacctgaattcttttctcacgg Alignment from CESAR AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACAcg tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACAcggtaattgtgttaaaatacataaacttgagacctgaagtgttctgtgtttt Alignment from Spaln_aa2Genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaattgtgttaaaatacataaacttgagacctgaattcttttctcacgg Alignment from Spaln_nt2Genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaattgtgttaaaatacataaacttgagacctgaattcttttctcacgg Alignment from Pairagon AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaattgtgttaaaatacataaacttgagacctgaattcttttctcacgg Alignment from Exonerate_protein2genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaattgtgttaaaatacataaacttgagacctgaattcttttctcacgg Alignment from Exonerate_coding2genome AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaattgtgttaaaatacataaacttgagacctgaattcttttctcacgg Alignment from GeneWise AAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGCAGCGGCGTGGAGATCCTGGCCAACCGGCCCTACACAGATGGGCCTGGAGGCAACGGGCAGTATACACACAAGGTGTACCACGTGGGCTCCCACATCCCAGGCTGGTTCCGGGCACTGTTACCCAAGGCTGCTCTGCAGGTAGAAGAGGAATCTTGGAACGCTTACCCATATACCCGGACACG tcctaaagttaagttaaggggtgggatccacctgtgactttgcctttcagAAAAAGAGCCGTGAGGAGTCTAGTGGTGAGGGTAGTGGTGTGGAGGTCCTGGCGAACCGCCACTACACAGATGGGCCTGGAGGCAATGGGGAGTATACACATGAGGTGTACCACGTAGGCTCCCACATCCCAGGTTGGTTCCGTGCACTGTTGCCTAAGGCTGCCCTGCAGGTAGAAGAGGAATCTTGGAATGCTTACCCATATACCCGGACACGgtaattgtgttaaaatacataaacttgagacctgaattcttttctcacgg #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCaagtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCaagtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccacatgtactcatgtatctctttgttttcttttacagGGACTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACCACTTTTGAGGCTGTCACCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCACTGCGGCTGATACCCTGTCCATCCATTTGTGCAGCAGCTTATGCCCTTGTCTCCAAgtaagtgcagagaggaaaattgagcaaacacagacagggcaagtaataat #### Pitpnm1_ID316_13 --> 1 - 1 Original Alignment cCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGg ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagcCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGggtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg Alignment from CESAR cCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGg ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagcCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGggtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg Alignment from Spaln_aa2Genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagCCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGGgtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg Alignment from Spaln_nt2Genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagCCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGGgtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg Alignment from Pairagon CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagCCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGGgtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg Alignment from Exonerate_protein2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagCCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGGgtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg Alignment from Exonerate_coding2genome CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagCCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGGgtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg Alignment from GeneWise CCTCCAGGTAGCCTCCACAGCTACCTCCTCTGGGGAGCCCCGCCGTGCAAGCACAGCCTCCTGTCCACCTGCCAGTTCTGAGGCTCCTGACGGCCCCACGAACGCTGCTCGCCTGGACTTCAAGGTCTCAGGCTTCTTCCTCTTTGGCTCCCCACTGGGCCTGGTGCTGGCTCTTCGCAAAACCGTGATGCCCGCCTTGGAGG ccaaggttgacctcaacaccagtaacacttcaccgtttttctccccgcagCCTTCAGTTAGCCGCAACAGCCACCTCCTCTGGGGAGCCCTGCCACGCTAGCACATCCTCCTGTCCACCAGCAAGTTCCGAAGCTCATGATGGGCCAACAAATGCTGCTCACCTGGACTTCAAAGTATCAGGATTCTTCCTCTTTGGTTCCCCAGTAGGCCTAGTATTGGCTCTTCGTAAAACTGTGATGTCTGCTTTGGAGGgtatgcattcaccatctttgctagttgcctcacctgaccatttatctgtg #### Pkd2l1_ID8956_12 --> 1 - 0 Original Alignment aCTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGAC------CACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagaCTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTT------GATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct Alignment from CESAR aCTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagaCTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTTGATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct Alignment from Spaln_aa2Genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagACTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTTGATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct Alignment from Spaln_nt2Genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagACTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTTGATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct Alignment from Pairagon ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagACTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTTGATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct Alignment from Exonerate_protein2genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagACTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTTGATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct Alignment from Exonerate_coding2genome ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagACTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTTGATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct Alignment from GeneWise ACTGGGGCACGAGGAGCACGAGATCACCGCTGCCTTCACCAGGTTTGATCAGGATGGGGACCACATACTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTGGAAGAGGAGAGG ctgggagtggcctgagtggctacagctcctgctgatatctgtccttacagACTGGCACATGAGGAGCATGAGATAACTGCTGCGTTCACCAGGTTTGATGGGGATGGGGATCACATATTGGATGAGGAGGAGCAGGAACAGATGCGGCAGGGACTTGAAGGGGATAGGgtgagtaaggccactcaagagggtgagacctggatatcaagaatatacct #### Plcb3_ID1908_23 --> 0 - 1 Original Alignment GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAg ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAggtcggcggaagaagctgtgccattaaggagccagccatactggattgctt Alignment from CESAR GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAg ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAggtcggcggaagaagctgtgccattaaggagccagccatactggattgctt Alignment from Spaln_aa2Genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAGgtcggcggaagaagctgtgccattaaggagccagccatactggattgctt Alignment from Spaln_nt2Genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAGgtcggcggaagaagctgtgccattaaggagccagccatactggattgctt Alignment from Pairagon GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAGgtcggcggaagaagctgtgccattaaggagccagccatactggattgctt Alignment from Exonerate_protein2genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAGgtcggcggaagaagctgtgccattaaggagccagccatactggattgctt Alignment from Exonerate_coding2genome GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAG ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAGgtcggcggaagaagctgtgccattaaggagccagccatactggattgctt Alignment from GeneWise GCTCAGGCCAGCACAGAGACATATCAGGAGACCCCGTGTCAACAGCCAGGGTCACAGCTCCCCTCCAACCCCACACCTAACCCACTGGATGCCTCACCTCGCTGGCCCCCCGGTCCTACCACTTCCTCCACTAGCTCCTCCCTCAGTAGCCCAGGGCAGCGAGATGAT-- ccaaagacccttgctctaaccattagcagtttctatgtttatattttaagGCTCAGGCCAGCACAGAGACGTATCAGGACCCCCCATGTCAAAAGCCAGGTTCACAGCTCCCTTCTAACCCCACACCGAACCCACTAGAAGCCTCTCCACGCTGGCCTCCCGGTCCCACCAATTCCTCCACTACCTCACCCCTCAGTAGCCCAGGTCGGCGGAAGAAGCTgtgccattaaggagccagccatactggattgctt #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagaTACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGggtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagaTACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGggtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt #### Plcb3_ID1920_11 --> 2 - 2 Original Alignment cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagcaGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACtcgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact Alignment from CESAR cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagcaGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACtcgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact Alignment from Spaln_aa2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagCAGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact Alignment from Spaln_nt2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagCAGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact Alignment from Pairagon CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagCAGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact Alignment from Exonerate_protein2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagCAGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact Alignment from Exonerate_coding2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagCAGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact Alignment from GeneWise CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaagccaaagccaatggttgttgttatctggtcttcacagCAGGTCAGCTAGCTGGGCCATCGTCGGTAGAGATGTACCGCCAGGCGCTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACCACTGAGGTGCCATTGTGTGATGTACTTGGTGCTATTGCGGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtgagcgggcatctggagggagactcctggtaaatccaatcttacacact #### Plcb3_ID1921_10 --> 2 - 1 Original Alignment acCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTg atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcagatCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTggtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct Alignment from CESAR acCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTg atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcagatCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTggtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct Alignment from Spaln_aa2Genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTGgtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct Alignment from Spaln_nt2Genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTGgtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct Alignment from Pairagon ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTGgtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct Alignment from Exonerate_protein2genome ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTGgtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct Alignment from Exonerate_coding2genome GACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcaGATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTGgtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct Alignment from GeneWise ACCAGATGTCTATGGAGGGCTTCAGCCGCTACCTGGGAGGGGAGGAGAATGGTATCCTGCCTCTGGAGGCCCTGGATCTGAGCATGGACATGACCCAGCCACTGAGCGCATATTTTATCAACTCCTCACACAACACCTATCTCACTG atccacctagcttatctgacatgttgtgtgtttctcactttctcatgcagATCAGATGTCTATGAAGGGCTTCAGCCGCTACTTAGGAGCTGAGGAGAATGGTATCCTGCCTCTGGAGGCACTGGATCTGAGTATGGACATGCCACAGCCACTGGGTGCTTATTTTATCAACTCGTCACATAATACTTATCTTACTGgtaagtaagatcatgtgcagtgtgatcatctggatcattcctaacacgct #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from Exonerate_coding2genome tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcaggaggtggacacactggatatcagctcaatcagagacacaagaacaggtcgttatgctcgcctgcccaaagtatatcagctagttttgcagtatataagcaccataacagttacaaggat Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgaacacgaccttgtacctttaaggtagcattcttttcttgcagGAGGTGGACACACTGGATATCAGCTCAATCAGAGACACAAGAACAGGTCGTTATGCTCGCCTGCCCAAAgtatatcagctagttttgcagtatataagcaccataacagttacaaggat #### Plce1_ID7621_7 --> 1 - 0 Original Alignment gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacaggTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTTCC---GGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAAGCT---GAGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGT---GTGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTC---ATTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt Alignment from CESAR gTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacaggTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTTCCGGC---TGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAAGCT---GAGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGT---GTGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTC---ATTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt Alignment from Spaln_aa2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacagGTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTTCCGGC---TGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAAGCT---GAGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGT---GTGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTC---ATTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt Alignment from Spaln_nt2Genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacagGTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTT---CCGGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAAGCTG---AGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGTG---TGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTCA---TTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt Alignment from Pairagon GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacagGTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTT---CCGGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAAGCTG---AGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGTG---TGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTCA---TTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt Alignment from Exonerate_protein2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacagGTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTTCCGGC---TGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAA---GCTGAGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGT---GTGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTC---ATTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt Alignment from Exonerate_coding2genome GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacagGTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTTCCGGC---TGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAA---GCTGAGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGT---GTGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTC---ATTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt Alignment from GeneWise GTTTATAATTGGAGATTTGCTGGATTCAGAAAATGACATCTTTGAGAAGTCCAAAGAGTGTGACCCCCATGGATCCGAGGAGTCACAGAAAGCCTTTGACCATGGGACAGAGCTTATCCCATGGTACGTGCTGTCCATCCAAGCAGATGTGCACCAGTTCCTATTGCAGGGGGCCACAGTCATCCACTATGACCAGGACACACATCTCTCGGCCCGCTGCTTTCTCCAGTTGCAGCCTGACAATAGCACGTTGACCTGGATGAAACCTCCCACTGCCTCCCCAGCAGGCGCCAGACCCAAGCTCGGTGTGCTTAGTAACATGGCCGAGCCTGGCAAGTTCCCATCCCCAGGCAACGCCGGGGTGAGCGGCCTGGCAGAGGGAATTCTGGATCTGTTCTCAGTGAAGGCTGTGTACATGGGACACCCTGGCATTGATATACACACTGTGTGTGTCCAGAACAAACTTAGTAGCATGCTTCTATCGGAGACGGGGGTCACACTGCTCTATGGGCTTCAGACCACGGACAATAGATTACTGCACTTTGTGGCGCCAAAGCACACGGCTGAGATGCTTTTCAGTGGATTGCTGGAACTCACTACAGCTGTGAGAAAGATAAGGAGGTTCCCTGACCAACGACAGCAGTGGCTTCGGAAACAGTATGTCAGCCTCTATCAG actctaagacaaaggacttattgtctcagaagctgtttctctttttacagGTTTATTATT---GAGTTACTGGATTCAGAAAATGTCATATTTGAAAAGTCCAAAGAATGTGACCCCCATGGATCTGAGGAGTCACAAAAGGCATTTGACCATGGGACAGAACTTATTCCATGGTATGTGCTGTCTATCCAAGCAGATGTGCACCAGTTCCTACTGCAGGGGGCAACAGTCATCCATTAT---CAGGATACACACCTTTCCGGC---TGCTTTCTCCAGTTGCAGCCTGACAATAGCACATTGACTTGGATGAAGTCTCCCACCTCATCCCCAGCTGGCGCAAGGCCCAAGCTTGGAGTGCTCAGTAACATGACAGAA---GCTGAGTTTCCATCACCAGGCAATGCTGGGGTGAGCAGTCTGGCAGAGGGAATTCAGGATCTTTTCTCAGTGAAGGCTGTTTATATGGGACACCCTGGCATCGATATACATACTGTATGTGTACAGAATGAGCTTATTAGCATGCTTCTATCAGAAACAGAGGTCACACTTCTCTATGGGCTTCAGGGTACAGACAACAGGCTACTGCATTTTGTAGCCCCAAAGCACACAGCAGAGACACTGTTTAGT---GTGCTGGATCTCACAACCACTGTTAGGAAAATAAGGAGATTCCCCGACCAACGTCTACAGTGGCTTCGGAAACAGTATGTC---ATTTACCAGgtatgtggcagatccagccctagcccttaggatacacaacccttatcctt #### Plce1_ID7623_9 --> 0 - 1 Original Alignment GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGg cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTggtgagtaatgcctcatgctcctattaaaatcataattttttactactgct Alignment from CESAR GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGg cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTggtgagtaatgcctcatgctcctattaaaatcataattttttactactgct Alignment from Spaln_aa2Genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTGgtgagtaatgcctcatgctcctattaaaatcataattttttactactgct Alignment from Spaln_nt2Genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTGgtgagtaatgcctcatgctcctattaaaatcataattttttactactgct Alignment from Pairagon GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTGgtgagtaatgcctcatgctcctattaaaatcataattttttactactgct Alignment from Exonerate_protein2genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTGgtgagtaatgcctcatgctcctattaaaatcataattttttactactgct Alignment from Exonerate_coding2genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTGgtgagtaatgcctcatgctcctattaaaatcataattttttactactgct Alignment from GeneWise GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG cttcgcatgagatagaacccagcagccatttttcctcccatttctgccagGGCGAAAGTAGAGATGTGACTGATGATGAAATGGCCACTCAAAAGGCCAAAATGTACAGAGAGTGTCGTAGCCGGACTGGCTCAGGTCCTCAAGATGTTAATGAACAAAAAGAGCTTGgtgagtaatgcctcatgctcctattaaaatcataattttttactactgct #### Plce1_ID7636_19 --> 0 - 1 Original Alignment GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATg gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATggtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct Alignment from CESAR GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATg gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATggtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct Alignment from Spaln_aa2Genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATGgtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct Alignment from Spaln_nt2Genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATGgtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct Alignment from Pairagon GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATGgtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct Alignment from Exonerate_protein2genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATGgtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct Alignment from Exonerate_coding2genome GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATGgtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct Alignment from GeneWise GCTCATCAGTTAGCATCCATGCAAGCACAGGCTTTCACCGGTGGGAATGCCAACCCGCCACCTGCCAGTAATGAGGAAGAGGAAGATGAGGAGGATGAATATGATTACGATTACGAGTCCCTGTCCGATG gggttttgtttctgtgaaaactccctaattctttacctcctacattttagGCCCATCAGTTAGCACCTATGCAAGCACAGGCTTTCACTGGTGGAAATGCAAACCCACCGCCTGCAAGTAATGAAGAAGAGGAAGATGAGGAGGATGAATACGATTATGATTACAAGTCACTTTCTGATGgtgagtgaatggttagacatggagattagttgctgtatgacagaaatgct #### Plce1_ID7637_20 --> 2 - 0 Original Alignment acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagacAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc Alignment from CESAR acAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagacAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc Alignment from Spaln_aa2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc Alignment from Spaln_nt2Genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc Alignment from Pairagon ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc Alignment from Exonerate_protein2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc Alignment from Exonerate_coding2genome ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc Alignment from GeneWise ACAATATTCTGGAAGACAGACCTGAGAACAAATCATGCGCTGACAAGCTTCAGTTTGAGTACAATGAAGAGGTCCCCAAGAGGATAAAGAAAGCAGACAACTCCTCTGGCAATAAGGGAAAG aggggaagtattgggttatatctcacaatgcttttctttccctttcttagACAATATTCTGGAAGATAGACCTGAGAACAAGTCTTGTGCCGATAAACTTAAGTTTGAGTACAATGAAGAGGTCCCGAAGAGAGTAAAGAAAGCAGACAACTCCTCTGGCAATAAAGGTAAGgtgagtgttcacattcactgtatgaagtctacagatagatgtgaggatgc #### Plce1_ID7644_26 --> 2 - 0 Original Alignment gaTATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttataggaTATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt Alignment from CESAR gaTATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttataggaTATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt Alignment from Spaln_aa2Genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttatagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt Alignment from Spaln_nt2Genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttatagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt Alignment from Pairagon GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttatagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt Alignment from Exonerate_protein2genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttatagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt Alignment from Exonerate_coding2genome GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttatagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt Alignment from GeneWise GATATCGACATCTTCAGCTGCGGAACCTCCACAATGAAATCTTGGAAATCTCTAGCTTATTCATAAACAGCAGAAGGATGGAAGAAAACCCCTCTGGCAGTTCCATGCCAGCCTCGTTG gttgcactttgagccttgtttataggctttatatacctctttatttatagGATATCGACATCTTCAGCTCCGGAATCTCCACAAAGAAATCCTGGAAATTTCTAGACTATTCATTAACAGCAGAAGAATGGAAGAAAACCCCTCTGGCAGCTCTATGCCAGCCTCATTGgtaagtaagttcaccttttagccagaaccacttattacatcactcatggt #### Plekhs1_ID12098_3 --> 0 - 2 Original Alignment ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACaggtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac Alignment from CESAR ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACgg gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACaggtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac Alignment from Spaln_aa2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACAGgtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac Alignment from Spaln_nt2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACAGgtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac Alignment from Pairagon ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACAGgtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac Alignment from Exonerate_protein2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACAGgtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac Alignment from Exonerate_coding2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACAGgtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac Alignment from GeneWise ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG gtccttgcctttcatagttttaactagtataataaaattctttctttcagACCTCCTGGAAGAAGCGTCTATTTATACTGTCCCAGAGCCGGGGATCAGGTCTTAGTCTTTCTTATTACAAAGATCATCAGCACAGAGGCTCCATTGAAATTGACAGgtgagtgtttggggtgggctgtataccgcctgtttattgtgtggccctac #### Plekhs1_ID12099_4 --> 1 - 2 Original Alignment cAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACag aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagcAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACaggtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt Alignment from CESAR cAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACag aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagcAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACaggtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt Alignment from Spaln_aa2Genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagCAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt Alignment from Spaln_nt2Genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagCAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt Alignment from Pairagon CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagCAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt Alignment from Exonerate_protein2genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagCAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt Alignment from Exonerate_coding2genome CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagCAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt Alignment from GeneWise CAGCTCCACTGTAGAAGTTGGTATAAACTGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATCAGAACTGCAAACAGAGACTATTTCCTTATTGGCCATGACAG aggagtctgttgtcaaatgagcatccagttaccgtctgtcccctccgtagCAGCACCACTGTAGAAGTTGGGGTAAATTGCCAGGAAAAGATGCAATCTGTTCAGAAGATGTTCAAGTGCCACCCAGATGAGGTGATGTCCATTAGAACTGCAAACCGAGACTATTTCCTAATTGGCCATGACAGgtatccagtacgtgaagtggacaagaaacctacaccataaatagactgtt #### Plekhs1_ID12100_5 --> 1 - 0 Original Alignment gGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcaggCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt Alignment from CESAR gGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcaggCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt Alignment from Spaln_aa2Genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcagGCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt Alignment from Spaln_nt2Genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcagGCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt Alignment from Pairagon GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcagGCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt Alignment from Exonerate_protein2genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcagGCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt Alignment from Exonerate_coding2genome GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcagGCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt Alignment from GeneWise GGAGAAGATTAAAGACTGGGTCTCCTTCATGACACCATACTGCCAGGGTGTTAAAGCAACCCATCAGAGAGCAGAG gggattgaaccagcctaaagaaactgcacgtgttctcttgattttctcagGCAAGAGATCAAAGACTGGGTTTCTTTCATGACACCATATTGCCGGGGTGTTAAAGCAACCTATGAAAGAGCAGAGgtaagccactatgcctaggacctaataaatgattgtagtgcattctttgt #### Plekhs1_ID12104_9 --> 1 - 2 Original Alignment tCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTGAT---CCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCaa attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagcCTTCTTAGGGAATCAACCTCTGCA---TCTGACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGGA---GGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTaagtaaactctggatcagagaaacctacgccctaataactacactctaagaa Alignment from CESAR tCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTGAT---CCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCaa attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagcCTTCTTAGGGAATCAACCTCTGCATCT---GACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGGA---GGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTaagtaaactctggatcagagaaacctacgccctaataactacactctaagaa Alignment from Spaln_aa2Genome TCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTGATCCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCAA attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagCCTTCTTAGGGAATCAACCTCTGCATCT---GACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGGAGGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTAAgtaaactctggatcagagaaacctacgccctaataactacactctaagaa Alignment from Spaln_nt2Genome TCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTGATCCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCAA attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagCCTTCTTAGGGAATCAACCTCTGCAT---CTGACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGGAGGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTAAgtaaactctggatcagagaaacctacgccctaataactacactctaagaa Alignment from Pairagon TCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTG---ATCCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCAA attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagCCTTCTTAGGGAATCAACCTCTGCAT---CTGACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGG---AGGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTAAgtaaactctggatcagagaaacctacgccctaataactacactctaagaa Alignment from Exonerate_protein2genome TCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTGATCCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCAA attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagCCTTCTTAGGGAATCAACCTCTGCATCT---GACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGGAGGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTAAgtaaactctggatcagagaaacctacgccctaataactacactctaagaa Alignment from Exonerate_coding2genome TCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTGATCCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCAA attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagCCTTCTTAGGGAATCAACCTCTGCATCT---GACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGGAGGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTAAgtaaactctggatcagagaaacctacgccctaataactacactctaagaa Alignment from GeneWise TCTCCTTAAAGAATCAACCTCTGCATCAGCCGACGACAACGATGGCCAAGCGGAATTCCAGACAGAGTCAGAGCTGGGGCCTCCCCACCAGGACAGCGGCACAGGAAGTGATCCATGTCTTTCACCTCCCAATTCCAAAGCCCAGACCACAGATGACCAAAAGGGGTCCGCCTCACTAACTGTTGTGAAATTGTCTATATTACTCAA attttatgcttgcataaaatagcagcccttccccatcgtgtttgttttagCCTTCTTAGGGAATCAACCTCTGCATCT---GACGACAATGATGGCCAAGCGGAATTCCAGACAGAATCAGAGTTGGGACCTTCTCACCAGGATGGTGGAGGGAGTGATCATCCATGTTTTTCACCTCCCAACTCCAGAGCCCAGACCACAGATGACCAGAAAGGGTCTGCCTCACTAACAGTTGTGAAGTTGTCTATATTACTTAAgtaaactctggatcagagaaacctacgccctaataactacactctaagaa #### Plekhs1_ID12105_10 --> 1 - 2 Original Alignment cAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCtg agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagcAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATAtggtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg Alignment from CESAR cAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCtg agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagcAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATAtggtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg Alignment from Spaln_aa2Genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagCAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg Alignment from Spaln_nt2Genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagCAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg Alignment from Pairagon CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagCAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg Alignment from Exonerate_protein2genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagCAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg Alignment from Exonerate_coding2genome CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagCAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg Alignment from GeneWise CAACATCCCCGATGAGAGCCAAGTGGAGACTCTGAACGTGTTCCTCTCTCCTCGGGATGCCATCGACTACCTCGCTCTGGTAGAAGCAGCAGGACAGATCTG agctgtctgtatggtctaatttgacctaccattctcccgttcctcagcagCAATATGCCTGATGAGAGCCAAGTGCAGACACTAAATGTGTTCCTTGCTCCTCGGGATGCCATAGACTACCTAACTCTGGTAGAAGCAGCAGGACAAATATGgtacgtttgagttgtagatggataatgtgcaggagctaaaaatagagggg #### Plgrkt_ID6260_2 --> 0 - 2 Original Alignment CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACC---ATCTCTTTAGCAACTgg atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACAACC------CTAGCAACTgggtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc Alignment from CESAR CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTgg atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACA---ACCCTAGCAACTgggtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc Alignment from Spaln_aa2Genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACA---ACCCTAGCAACTGGgtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc Alignment from Spaln_nt2Genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACAA---CCCTAGCAACTGGgtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc Alignment from Pairagon CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACAA---CCCTAGCAACTGGgtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc Alignment from Exonerate_protein2genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACA---ACCCTAGCAACTGGgtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc Alignment from Exonerate_coding2genome CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACA---ACCCTAGCAACTGGgtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc Alignment from GeneWise CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACTGG atttcgtgtttggtctttaggggaattgcatttcccctcatccttcccagCTAGAAAGGCATCTGACTATGCAGAATGAGATGCGAGAAAGGCAAACAGCCATGCAAATTGCGTGGTCCCGAGAATGTCTCAGACATTTTGGGACATTTTTTGGGATAGCAACA---ACCCTAGCAACTGGgtgaagtatccattttatctataaagcttctaaaaaattgaccctagtgc #### Pnlip_ID12746_5 --> 0 - 1 Original Alignment TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAg tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAggtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc Alignment from CESAR TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAg tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAggtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc Alignment from Spaln_aa2Genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAGgtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc Alignment from Spaln_nt2Genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGG---CCACAGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAGgtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc Alignment from Pairagon TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGG---CCACAGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAGgtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc Alignment from Exonerate_protein2genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAGgtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc Alignment from Exonerate_coding2genome TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAGgtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc Alignment from GeneWise TCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGCCAC---AGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGGAAGGATCACAG tttagaattttgtgttacttgggtagcttttcacatatttcaatttatagTCTGATCTGGGATACTCACTTAACAATGTCCACCTGATTGGTTACAACAGTCTAGGGTCCCACATAGCTGGGGAGGCTGGGAGGAGGGCGTTCGGAGCTATTGGACGGATCACAGgtactttcgttattaagtgggtaacctgtggcatttctcccaagttattc #### Pnlip_ID12749_8 --> 2 - 0 Original Alignment gaACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcaggaACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga Alignment from CESAR gaACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcaggaACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga Alignment from Spaln_aa2Genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcagGAACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga Alignment from Spaln_nt2Genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcagGAACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga Alignment from Pairagon GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcagGAACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga Alignment from Exonerate_protein2genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcagGAACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga Alignment from Exonerate_coding2genome GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcagGAACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga Alignment from GeneWise GAACTCGAAACTTTGCTGCCTGTAACCACTTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCA ccacatagagagacaatatgaatcactgctttaaaactttcttctttcagGAACTAGAAATTTTGCTGCTTGTAACCACTTAAGAAGCTACAAGTTTTACACTGACAGCATTGTCAACCCAACTGGTTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAgtcagttgagattgaggtgtcttatgttataactttattataacttcaga #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGT---TTTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGT---TTTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTC-- gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt #### Pnlip_ID12752_11 --> 1 - 2 Original Alignment gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt caaacagatccacaatgcttaatgctcttgcctttatatgtgcatttcagg------------------------GATGGCAATGAATTTGACTCTGAT------GTTGGAGATTTGCAGAAGGTTAAATTTATCTGC---AACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAgtgtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat Alignment from CESAR gGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAgt caaacagatccacaatgcttaatgctcttgcctttatatgtgcatttcaggGAT------------------------GGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAATTTATC---TGCAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAgtgtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat Alignment from Spaln_aa2Genome CAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caaacagatccacaatgcttaatgctcttgcctttatatgtgcatttcagGGATGGCAATGAATTTGACTCTGATGTTGGAGATTTGCAGAAGGTTAAATTTATC---TGCAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat Alignment from Spaln_nt2Genome TCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caaacagatccacaatgcttaatgctcttgcctttatatgtgcatttcagGGATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAATTTATCTG---CAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat Alignment from Pairagon GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGT caaacagatccacaatgcttaatgctcttgcctttatatgtgcatttcagGG------------------------ATGGCAATGAATTTGACTCT------GATGTTGGAGATTTGCAGAAGGTTAAATTTATCTG---CAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTgtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat Alignment from Exonerate_protein2genome caaacagatccacaatgcttaatgctcttgcctttatatgtgcatttcagggatggcaatgaatttgactctgatgttggagatttgcagaaggttaaatttatctgcaacaatgtcattaacccaacactgccaaaagtgggagcatcagggattacagtggaaagaaatgatggcagagtgtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat Alignment from Exonerate_coding2genome GGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGA caaacagatccacaatgcttAATGCTCTTGCCTTTATATGTGCATTTCAGGGATGGCAATGAATTTGACTCTGATGTTGGAGATTTGCAGAAGGTTAAATTTA---TCTGCAACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAgtgtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat Alignment from GeneWise -AAGGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTACAACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCAGAGTG caaacagatccacaatgcttaatgctcttgcctttatatgtgcatttcagGGATGGC---------------------------AATGAATTTGACTCTGATGTT------GGAGATTTGCAGAAGGTTAAATTTATCTGC---AACAATGTCATTAACCCAACACTGCCAAAAGTGGGAGCATCAGGGATTACAGTGGAAAGAAATGATGGCAGAGTGtaggatactcttgtaccaaaagccagcaggatccgtgacttgagttcat #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga #### Pnliprp1_ID12767_4 --> 0 - 0 Original Alignment AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt Alignment from CESAR AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt Alignment from Spaln_aa2Genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt Alignment from Spaln_nt2Genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt Alignment from Pairagon AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt Alignment from Exonerate_protein2genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt Alignment from Exonerate_coding2genome AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt Alignment from GeneWise AACATGTTCCAAGTGGAGGAGGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTGCGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTG aacacatgactctggaggtccctggcagtgttgggcatgctttgttttagAACATGTTCCAGGTGGAGGAGGTGAACTGCATCTGTGTGGACTGGAAGAGGGGCTCTCAGACTACCTACACACAGGCTGCCAACAATGTGCGAATTGTGGGTGCCCAGGTAGCTCAGATGATTGACATCCTTGTGgtatggggtgtagtaaggaggtgatgagctgaagtgactctatggagtgt #### Pnliprp1_ID12772_9 --> 0 - 1 Original Alignment AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAc tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCAcgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt Alignment from CESAR AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAc tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCAcgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt Alignment from Spaln_aa2Genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCACgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt Alignment from Spaln_nt2Genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCACgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt Alignment from Pairagon AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCACgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt Alignment from Exonerate_protein2genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCACgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt Alignment from Exonerate_coding2genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCACgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt Alignment from GeneWise AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC tttgtagttcttaacagtaaaaaacctgtgttttaaactcctttctgcagAACAAATGCTTACCCTGCCCAGATGAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCGAAGTTCTTCCTGAACACAGGAAAAGCTAAGAATTTTGCACgtatgttatgtactgagacaggtcataagtgaattatgcactacctaatt #### Pola2_ID1328_13 --> 0 - 2 Original Alignment AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAaggtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag Alignment from CESAR AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAag cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAaggtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag Alignment from Spaln_aa2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag Alignment from Spaln_nt2Genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag Alignment from Pairagon AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag Alignment from Exonerate_protein2genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag Alignment from Exonerate_coding2genome AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag Alignment from GeneWise AACTGTAAGTTGACAAGCCCATTCGAAGACGTTTTCAAGCAATGCCTGAGAACAGTTATCGAAGGAACGAGAAG cacacacattgggggtctgccctaagtgtttctctctcttgaatttgcagAACTCTAAGTCGACTAGCCCATTTGAAGACGTTCTTAAACAATGCCTAAGAACAGTTATTGAAGGAACAAGAAGgtaaagttcccaactgctggacaaaacccaattttaaagctactaaagag #### Pola2_ID1330_11 --> 2 - 0 Original Alignment ctTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacacgtagccTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa Alignment from CESAR ctTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacacgtagccTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa Alignment from Spaln_aa2Genome CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacacgtagCCTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa Alignment from Spaln_nt2Genome CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacacgtagCCTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa Alignment from Pairagon CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacacgtagCCTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa Alignment from Exonerate_protein2genome CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacacgtagCCTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa Alignment from Exonerate_coding2genome AGGGAGCTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacACGTAGCCTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa Alignment from GeneWise CTTCTGAGCAGACTATGGTGGTAGTTGCCTGCGGGCCTTATACCACCTCCGACAGCATCACCTATGACCCCCTGCTTGATCTGATCGCCATCATCAACCGTGACCAGCCAGATGTCTGCATCCTG acttggtgacatatccttttgtctcttgcacttgctttattcacacgtagCCTCTGAACAGACGATGGTGGTAGTTGCTTGTGGCCCCTATACCACCTCTGACAGCATCACTTATGGCCCCCTGCTTGATCTGATTGCCATCATCAACCGGGACCAGGCGGATGTCTGCATTCTAgtgagactactgtgagcatggagtctatcaggatgaataaggacagacaa #### Pola2_ID1331_10 --> 0 - 1 Original Alignment GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagGGTGTACCGCTTCCATTCTATCAGCCAACCGAAGAGAAGGGAggtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa Alignment from CESAR GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagGGTGTACCGCTTCCATTCTATCAGCCAACCGAAGAGAAGGGAggtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa Alignment from Spaln_aa2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagGGTGTACCGCTTCCATTCTATCAGCCAACCGAAGAGAAGGGAGgtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa Alignment from Spaln_nt2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagGGTGTACCGCTTCCATTCTATCAGCCAACCGAAGAGAAGGGAGgtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa Alignment from Pairagon GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagGGTGTACCGCTTCCATTCTATCAGCCAACCGAAGAGAAGGGAGgtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa Alignment from Exonerate_protein2genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagGGTGTACCGCTTCCATTCTATCAGCCAACCGAAGAGAAGGGAGgtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa Alignment from Exonerate_coding2genome agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagggtgtaccgcttccattctatcagccaaccgaagagaagggaggtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa Alignment from GeneWise GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG agatgggagtatgtgcggtaggtgcagcatattttttcccttccccacagGGTGTACCGCTTCCATTCTATCAGCCAACCGAAGAGAAGGGAGgtaagtattgtttcaaaatcttctttgctatctatggagccagtatacaa #### Pola2_ID1332_9 --> 0 - 0 Original Alignment GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGgtacaaggtgagccacccttcccccactccaaaatgggtacgaagccatg Alignment from CESAR GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGgtacaaggtgagccacccttcccccactccaaaatgggtacgaagccatg Alignment from Spaln_aa2Genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGgtacaaggtgagccacccttcccccactccaaaatgggtacgaagccatg Alignment from Spaln_nt2Genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGgtacaaggtgagccacccttcccccactccaaaatgggtacgaagccatg Alignment from Pairagon GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGgtacaaggtgagccacccttcccccactccaaaatgggtacgaagccatg Alignment from Exonerate_protein2genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGgtacaaggtgagccacccttcccccactccaaaatgggtacgaagccatg Alignment from Exonerate_coding2genome GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGGGCGTGC cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGGTACAAGgtgagccacccttcccccactccaaaatgggtacgaagccatg Alignment from GeneWise GTTGTAATTATGGAAGGATTCAACACCACTGGTAGGAGACTTACTGCCACCAAACTCTATGAG cctgagtcacctgatctgttctggtccttgtcaatttccttctcatttagGTTGTAATTATGGAAGGATTCAACACTACTGGTAGGAGACTTACTGCCACCAAACTCTATGAGgtacaaggtgagccacccttcccccactccaaaatgggtacgaagccatg #### Pola2_ID1333_8 --> 0 - 0 Original Alignment GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg Alignment from CESAR GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg Alignment from Spaln_aa2Genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg Alignment from Spaln_nt2Genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg Alignment from Pairagon GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg Alignment from Exonerate_protein2genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg Alignment from Exonerate_coding2genome GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg Alignment from GeneWise GAGCCTGTTATTCTCCTGGGTCAGATTGGCTGCGACAGCAACGGGAAGCTGAACAGCAAGTCCGTGATTCTCGAGGGGGACCAGGAGCACTCCTATGGCGCGCAGATCCCAGTGGACCTATCGGAACTCAAAGAGTATTCCCTCTTCCCTGGACAG taaaataacctatgcatatttgggcagtcttgatttttctgatattctagGAGCCTGTTATCCTCCTGGGTCAAATTGGCTCTGACAGCAACAGGAAGCTGAACAGCAAGTCTGTAATTCTTGAGGGAGACCAGGAGCACTCTTATGGTGCACAAATCCCAGTGGACCTATTAGACCTCAAAAAGTATTCACTTTTCCCTGGACAGgtaagttgagagttttctgatactgtgatgacttttgtcttatttttagg #### Pola2_ID1335_6 --> 1 - 1 Original Alignment tGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAg ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagcACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAggtaattattacagactctcaattctgcaagagagcggaggacctgttcca Alignment from CESAR tGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAg ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagcACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAggtaattattacagactctcaattctgcaagagagcggaggacctgttcca Alignment from Spaln_aa2Genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagCACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAGgtaattattacagactctcaattctgcaagagagcggaggacctgttcca Alignment from Spaln_nt2Genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagCACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAGgtaattattacagactctcaattctgcaagagagcggaggacctgttcca Alignment from Pairagon TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagCACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAGgtaattattacagactctcaattctgcaagagagcggaggacctgttcca Alignment from Exonerate_protein2genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagCACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAGgtaattattacagactctcaattctgcaagagagcggaggacctgttcca Alignment from Exonerate_coding2genome TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagCACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAGgtaattattacagactctcaattctgcaagagagcggaggacctgttcca Alignment from GeneWise TGCTACCCCCTCCCAGAAATACACCTCCAGAACCAACCGGGGAGAAGTGGTGACCACCTTTGGCTCCGCACAGGGCTTGTCTTGGTCCGGGAGAGGAGGCTCTGGAAGCGTCAGTCTGAAGGTCGTGGGGGACCCAGAGCCACTCACTGGCAGCTACAAAGCGATGTTTCAGCAGCTCATGGGTGTTCGAGAAG ccattcgtctgccatgtccccatgattggaatgcttctttactctttcagCACTACTCCCTCCCAGAAATACACGTCCAGAATCAAGCACGGAGAGGTGGTCACCACCTTTGGCTCTGCACAAGGTTTGTCTTGGTCAGGGGGGGGAGGCTCTGGTAGTGTTAGTCTGAAGGTAGCGGGGGACCCAGAGCCACTCACGGGCAGCTACAAAGCAATGTTTCAGCAGCTGATGGGAGTTGGAGAAGgtaattattacagactctcaattctgcaagagagcggaggacctgttcca #### Pola2_ID1339_2 --> 2 - 0 Original Alignment tgGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagtgGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct Alignment from CESAR tgGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagtgGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct Alignment from Spaln_aa2Genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagTGGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct Alignment from Spaln_nt2Genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagTGGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct Alignment from Pairagon TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagTGGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct Alignment from Exonerate_protein2genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagTGGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct Alignment from Exonerate_coding2genome TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagTGGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct Alignment from GeneWise TGGCAGAGCTGTGTGTTCTATACCGACAGACTGAGGACGGGATGGTCAGTGAGCTCATCGCCTTCTGCACCAGTGCGGGGAAGACATGCCTTACTGTAGACATCCTGAACTCTTTTGAATACGAG catcaatgcagagagtttagcaggggatgatcttctgtcaactgtttcagTGGCAGAGTTGTGTGTTCAATACCAACAGACTGAGGATGGGATGGTCAGTGAACTGATTGCGTTCTGCACCAGTGCAGGGAAGACATGTCCTACTGTAGACATCCTGAACTCCTTTGAATATGAGgtgagttcaaaactgggagctaacacttctttattttgtgatttggttct #### Poll_ID9481_6 --> 0 - 0 Original Alignment GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat Alignment from CESAR GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat Alignment from Spaln_aa2Genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat Alignment from Spaln_nt2Genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat Alignment from Pairagon GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat Alignment from Exonerate_protein2genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat Alignment from Exonerate_coding2genome GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat Alignment from GeneWise GGCTTCCGAAACCTAGAAGATCTCCAAAGCCTGGGCTCCCTGACCGCTCAGCAGGCCATTGGCTTGAAGCACTACGATGACTTCCTGGACCGCATGCCCAGGGAGGAGGCTGCGGAAATTGAGCAGACG ataattgacacatgcatgaggggccagtctcccagatccttcccttctagGCTTTCCAAAACCTCAAAGATCTTCAAAGCCTAGGCTCCTTGACAACTCAGCAGACCATTGGCTTGAAGCACTATGACGACTTCCTTGACCGCATGCCCTGGGAGGAGGCTGCTGAAATTGAACAGGCAgtaagtacagtgcatggccaggcagtgctctaaatgtggaagtaaagcat #### Polr2g_ID2377_6 --> 0 - 0 Original Alignment GACATTGTGATTCAGCAG---GACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGATGAG------ATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from CESAR GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Spaln_aa2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Spaln_nt2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Pairagon GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Exonerate_protein2genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTG---GATGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Exonerate_coding2genome ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagggcatattgattcagctggatgagatacggctaaagattgtagggacacatgtagataaaaacgatgttgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from GeneWise GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATTTTTGCCATTGGCTCTCTGATGGACGACTACTTGGGGCTCGTGAGC ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGAT---GAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTGTACGTCTAGGTAGGCTTTTGTTC---TTTGTCTATATGACAGCAcagat #### Polr2g_ID2379_4 --> 0 - 0 Original Alignment GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATgtaaacctaaagttccttgttcctggaagtcaaaattctaacttttctcc Alignment from CESAR GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATgtaaacctaaagttccttgttcctggaagtcaatgggtcggggctctgtt Alignment from Spaln_aa2Genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATgtaaacctaaagttccttgttcctggaagtcaaaattctaacttttctcc Alignment from Spaln_nt2Genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATgtaaacctaaagttccttgttcctggaagtcaaaattctaacttttctcc Alignment from Pairagon GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATgtaaacctaaagttccttgttcctggaagtcaaaattctaacttttctcc Alignment from Exonerate_protein2genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATgtaaacctaaagttccttgttcctggaagtcaaaattctaacttttctcc Alignment from Exonerate_coding2genome GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATgtaaacctaaagttccttgttcctggaagtcaaaattctaacttttctcc Alignment from GeneWise GTTGGACTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACAT-------------------------------------------------- aaagtattaaaatatagagcaattcatttacctcattgcttcttcctcagGTTGGTCTGTTCACAGAAATTGGGCCTATGTCTTCTTTTATCTCTCGACATGTAAACCTAAAGTTCCTTGTTCCTGGAAGTCAAAATTCTAACTTTTCTCC #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctaaagtgtaccttgcactttctccttttccccatgcagGTTCCTGCCTCAGCCCCCCAATCTGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCAGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCCGTGGGGAATAAAgtgaggattctaacactaatcctagtcccagcctatcttctcaaatcctg #### Ppp1r32_ID2846_5 --> 0 - 1 Original Alignment GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAg caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTggtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag Alignment from CESAR GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAg caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTggtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag Alignment from Spaln_aa2Genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTGgtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag Alignment from Spaln_nt2Genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTGgtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag Alignment from Pairagon GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTGgtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag Alignment from Exonerate_protein2genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTGgtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag Alignment from Exonerate_coding2genome GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTGgtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag Alignment from GeneWise GGTCCACGCTTCATGACTTCTGAATACAATTCCAAGTATATCAAGGAGTCTCCAAACCACCCAG caccatcattacaaaaaacacctatcaccaaatgctttgtctttgaaaagGGTCCATGGTTCATGACTTCTGAATACAATTCCAAGTATATAAAGGAATCTCCAAACCACCCTGgtgaggcctctcattttggtcttgtctctatgatccatcgtgtactccag #### Ppp1r32_ID2849_2 --> 2 - 2 Original Alignment gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gcagctcattacccttttggtgagctttaaggctatgctttacctttcaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAgggtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc Alignment from CESAR gtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAgg gcagctcattacccttttggtgagctttaaggctatgctttacctttcaggtCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAgggtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc Alignment from Spaln_aa2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcagctcattacccttttggtgagctttaaggctatgctttacctttcagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAGGgtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc Alignment from Spaln_nt2Genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcagctcattacccttttggtgagctttaaggctatgctttacctttcagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAGGgtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc Alignment from Pairagon GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcagctcattacccttttggtgagctttaaggctatgctttacctttcagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAGGgtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc Alignment from Exonerate_protein2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcagctcattacccttttggtgagctttaaggctatgctttacctttcagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAGGgtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc Alignment from Exonerate_coding2genome GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcagctcattacccttttggtgagctttaaggctatgctttacctttcagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAGGgtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc Alignment from GeneWise GTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGCCATGTAGGCACAGGCTACAAATCCAACTATCGGCCCCTGGTCTCCTACCAACCGCACCTGGACACCCTGGACAATCCTGCCATAGG gcagctcattacccttttggtgagctttaaggctatgctttacctttcagGTCGGGAGGAGTTTAAGCCCCGCCTGGGAAGTCATGTAGGTGCAGGCTACAAATCCAACTATCGGCCTCTGGTCTCCTACCAACCACACCTGGATACCCTGGACAATCCAGCAATAGGgtaagattggatacacctatttgatcttagatcttgtagaatctcatgcc #### Ppp6r3_ID76_17 --> 1 - 1 Original Alignment cTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGc tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagcTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGcgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa Alignment from CESAR cTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGc tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagcTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGcgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa Alignment from Spaln_aa2Genome CTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGC tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagCTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGCgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa Alignment from Spaln_nt2Genome CTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGC tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagCTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGCgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa Alignment from Pairagon CTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGC tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagCTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGCgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa Alignment from Exonerate_protein2genome CTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGC tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagCTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGCgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa Alignment from Exonerate_coding2genome CTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGC tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagCTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGCgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa Alignment from GeneWise CTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAAGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGC tggctctgcatgtcagatgatgcagccttgaccactcattgttgtcgcagCTCTGGCAGTACAGACAGTGAAGAAAGTACAGATTCTGAAGAGGAAGATGGGGCTGAACAGGACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGATAAGATGGAGGTCGATTTAAATGAGCgtaagttactctgggaatctagatggtagtcaagagttctgggttctgaa #### Ppp6r3_ID77_16 --> 0 - 2 Original Alignment GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCag gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTgggtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat Alignment from CESAR GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCag gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTgggtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat Alignment from Spaln_aa2Genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTGGgtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat Alignment from Spaln_nt2Genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTGGgtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat Alignment from Pairagon GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTGGgtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat Alignment from Exonerate_protein2genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTGGgtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat Alignment from Exonerate_coding2genome GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTGGgtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat Alignment from GeneWise GGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTGATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAGGAGGTCCAG gtttgtccattcctcttcctctcttttctatacattctttgttcttgcagGGAAATATTGCCCTATTTGAGGCATGTTGTAAAGAAAGAATACAACAATTTGATGATGGTGCCTCTGATGAAGAGGACATCTGGGAGGAGAAGCATATTGCATTTACTCCTGAATCCCAAAGGAGGGCTGGgtaagttactatcattgccatgctgaatgactcacctaggatgtgcacat #### Ppp6r3_ID78_15 --> 1 - 0 Original Alignment tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagtGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg Alignment from CESAR tGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagtGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg Alignment from Spaln_aa2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg Alignment from Spaln_nt2Genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg Alignment from Pairagon TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg Alignment from Exonerate_protein2genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg Alignment from Exonerate_coding2genome TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg Alignment from GeneWise TGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACTCTCAATACAAATGAAAGT acatttctcgtccaatagacacttatgactttctgttccgtttgctgcagTGTGTCTTTTGATCGGGTGTCAGATGTCAACTTTACTCTCAATACAAATGAAAGTgtaagtaaaaatacttttcattatcctttatcgttttgaacattatgttg #### Prdx3_ID13362_5 --> 0 - 2 Original Alignment AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCaggtaagagttgtttgttgctagctatggaatgactttatatatccttatgt Alignment from CESAR AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCaggtaagagttgtttgttgctagctatggaatgactttatatatccttatgt Alignment from Spaln_aa2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagagttgtttgttgctagctatggaatgactttatatatccttatgt Alignment from Spaln_nt2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagagttgtttgttgctagctatggaatgactttatatatccttatgt Alignment from Pairagon AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagagttgtttgttgctagctatggaatgactttatatatccttatgt Alignment from Exonerate_protein2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagagttgtttgttgctagctatggaatgactttatatatccttatgt Alignment from Exonerate_coding2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagagttgtttgttgctagctatggaatgactttatatatccttatgt Alignment from GeneWise AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG aggccttgggccatccatgaagaaccagccctacttgattttaattttagAATGGTGGTTTGGGCCACATGAACATCACACTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagagttgtttgttgctagctatggaatgactttatatatccttatgt #### Prkg1_ID6493_13 --> 1 - 0 Original Alignment gGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccaggGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt Alignment from CESAR gGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccaggGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt Alignment from Spaln_aa2Genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt Alignment from Spaln_nt2Genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt Alignment from Pairagon GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt Alignment from Exonerate_protein2genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt Alignment from Exonerate_coding2genome GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt Alignment from GeneWise GGGTTCGTTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTCGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCGGAGAATCTCATCCTAGATCATCGAGGCTATGCCAAACTG tagtgatatgcgacttgcctattctatgctggtgtcattctcttctccagGGGTTCATTTGAAGACTCAACAACCAGGTTTTACACTGCATGTGTGGTAGAAGCATTTGCATATCTTCATTCCAAAGGAATCATTTACAGGGACCTGAAGCCGGAGAACCTCATCATAGACCATCAGGGCTATGCCAAACTGgtatgtagagtacttgatacaagggctaacatctaaacctattattctgt #### Prkg1_ID6518_7 --> 0 - 2 Original Alignment GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGgg aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGgggtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt Alignment from CESAR GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGgg aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGgggtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt Alignment from Spaln_aa2Genome GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGGG aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGGGgtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt Alignment from Spaln_nt2Genome GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGGG aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGGGgtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt Alignment from Pairagon GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGGG aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGGGgtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt Alignment from Exonerate_protein2genome GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGGG aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGGGgtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt Alignment from Exonerate_coding2genome GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGGG aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGGGgtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt Alignment from GeneWise GTGAATGTTACTCGAGAAGACTCACCAAGTGAAGACCCAGTCTTCCTTAGAACTTTAGGGAAGGGAGATTGGTTTGGAGAGAAAGCGTTGCAGGG aaattcattgagtagaaggtagagcacccttctttctgtgtcttttgcagGTAATTGTTACTCGAGAGGACTCACCAAGTGAAGAGCCAGTCTTCCTTAGAACCTTAGGAAAGGGAGATTGGTTTGGAGAGGAAGCATTGCGGGGgtaatgacgttgttatgtagaatagattcatgctatatgaatactgcctt #### Prkg1_ID6530_4 --> 2 - 2 Original Alignment ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag ctgggtgagatggattaattttccacgctttcttctcctttcccttccagctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAaggtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta Alignment from CESAR ctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAag ctgggtgagatggattaattttccacgctttcttctcctttcccttccagctCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAaggtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta Alignment from Spaln_aa2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ctgggtgagatggattaattttccacgctttcttctcctttcccttccagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAAGgtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta Alignment from Spaln_nt2Genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ctgggtgagatggattaattttccacgctttcttctcctttcccttccagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAAGgtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta Alignment from Pairagon CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ctgggtgagatggattaattttccacgctttcttctcctttcccttccagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAAGgtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta Alignment from Exonerate_protein2genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ctgggtgagatggattaattttccacgctttcttctcctttcccttccagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAAGgtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta Alignment from Exonerate_coding2genome CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ctgggtgagatggattaattttccacgctttcttctcctttcccttccagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAAGgtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta Alignment from GeneWise CTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTACATGGAATTTTTAAAAAG ctgggtgagatggattaattttccacgctttcttctcctttcccttccagCTCTTGTAAATGTGAAACTCTGGGCCATCGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACTGAGTACATGGAATTTTTAAAAAGgtaagtcctgttgtttcttctcattttgaaggccttgtttgttgcctcta #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagtgGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaatactcctgccacattcgacccagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagtgGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaatactcctgccacattcgacccagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaatactcctgccacattcgacccagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaatactcctgccacattcgacccagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaatactcctgccacattcgacccagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaggccaatactcctgccacattcgacccagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA ggtgcaggagttgtagaggagagatatttcatttttttttctcattacagTGGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCAGTATTCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGGTAAGGCCAATACTCCTGCCACATTCGACCCAGGATGCAGTCATGCTGCA #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG aaaatacagcccactctataattatttgaatgtgtcctgtgttcacacagCTTCAAGACAAGGCCACTGTGTTAACCACGGAACAAAAGAAAgtaagtctgtctgttatgaggatatctgcatctttggagagaagtgtgag #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ttgtgatgttatctgagcaaatagtccatcctatgtttttatcccaccagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagaggacatatagacacaaacaaagggatgtagtgggggggaattga #### Pten_ID6742_2 --> 2 - 2 Original Alignment atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagatATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGaggtacgtacagttgatgttttatttcctatatcagtcattacattgatggg Alignment from CESAR atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagatATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGaggtacgtacagttgatgttttatttcctatatcagtcattacattgatggg Alignment from Spaln_aa2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagATATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtacgtacagttgatgttttatttcctatatcagtcattacattgatggg Alignment from Spaln_nt2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagATATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtacgtacagttgatgttttatttcctatatcagtcattacattgatggg Alignment from Pairagon ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagATATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtacgtacagttgatgttttatttcctatatcagtcattacattgatggg Alignment from Exonerate_protein2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagATATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtacgtacagttgatgttttatttcctatatcagtcattacattgatggg Alignment from Exonerate_coding2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagATATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtacgtacagttgatgttttatttcctatatcagtcattacattgatggg Alignment from GeneWise ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatgaactgatttttcttttttaaaatcttaagATATCTATCCAAATATTATAGCTATGGGTTTTCCTGCAGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtacgtacagttgatgttttatttcctatatcagtcattacattgatggg #### Pten_ID6746_4 --> 1 - 1 Original Alignment aTGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAg aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcaggTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAggtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat Alignment from CESAR aTGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAg aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcaggTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAggtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat Alignment from Spaln_aa2Genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat Alignment from Spaln_nt2Genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat Alignment from Pairagon ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat Alignment from Exonerate_protein2genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat Alignment from Exonerate_coding2genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat Alignment from GeneWise ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatgcaaagcagggagtaactttatgttcctccctatgaacctctcagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcaaaatgagtacagtaataatacaataatagagaaccaacat #### Pten_ID6747_5 --> 2 - 0 Original Alignment ttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagttGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc Alignment from CESAR ttGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagttGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc Alignment from Spaln_aa2Genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagTTGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc Alignment from Spaln_nt2Genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagTTGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc Alignment from Pairagon TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagTTGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc Alignment from Exonerate_protein2genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagTTGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc Alignment from Exonerate_coding2genome TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagTTGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc Alignment from GeneWise TTGCACAGTATCCTTTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTCTGTGAAGATCTTGACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGGACTGGTGTAATGATTTGTGCATATTTATTGCATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTTTATGGGGAAGTAAGGACCAGAGACAAAAAG ctctaaataagaaatttataaactccttctttctccttcttcttccccagTTGCACAGTACCCTTTTGAAGACCATAACCCACCACAGCTAGAACTCATCAAACCCTTCTCTGAAGATCTAGATCAGTGGCTAAGTGAAGATGACAATCATGTAGCAGCAATTCACTGTAAAGCCGGAAAGGGACGGACTGGTGTGATGGTTTGTGCATACTTATTGCATCGGGGCAAATTCTTAAAGTCACAAGAGGCCCTAGACTTTTATGGAGTAGTAAGGACTAGAGACAAAAAGgtgagttgcggactttttttttattattaatcaagctctctcaatatacc #### Pygm_ID1691_15 --> 2 - 0 Original Alignment gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctaggcATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac Alignment from CESAR gcATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctaggcATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac Alignment from Spaln_aa2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctagGCATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac Alignment from Spaln_nt2Genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctagGCATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac Alignment from Pairagon GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctagGCATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac Alignment from Exonerate_protein2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctagGCATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac Alignment from Exonerate_coding2genome GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctagGCATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac Alignment from GeneWise GCATCAAAAGGGAGCCCAATAGGTTTATGGTGCCGAGGACTATCATGATTGGAGGCAAG gcagtctgtttttgaagcagctataagtcctacattcctttccattctagGCATAAAAAGGGAGCTCAACAGGTTCATGGTGCCAAGGACTATCATGATTGGAGGTAAGgtgggtagagattggcaggcatgagattaagatgttcaaaggaagtgtac #### Pyroxd2_ID8601_7 --> 2 - 0 Original Alignment ggCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagcaCACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagacactgtatg Alignment from CESAR ggCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagcaCACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagtgatcatcac Alignment from Spaln_aa2Genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagCACACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagacactgtatg Alignment from Spaln_nt2Genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagCACACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagacactgtatg Alignment from Pairagon GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagCACACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagacactgtatg Alignment from Exonerate_protein2genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagCACACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagacactgtatg Alignment from Exonerate_coding2genome GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagCACACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagacactgtatg Alignment from GeneWise GGCGCACCCTGGGAGCCCAGCTTCCCCAATATTATGAGGTCCTCACAGCCCCCATTTCCAAG ccttgaaaaccaaattattatgatttcaatgtgtttgttttctacttaagCACACACTCTGGGAGCCCAGCTTACACAACCTTATGAGGTCCTTACAGCCTCCATCTCCAAGgtaggcatacccacccagtggactatgggtgctatcctagacactgtatg #### Pyroxd2_ID8603_5 --> 0 - 0 Original Alignment AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from CESAR AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Spaln_aa2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Spaln_nt2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Pairagon AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Exonerate_protein2genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Exonerate_coding2genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from GeneWise AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtaaagaatggctttcttcttcagAAACATGGGCTGAAACTTCATTTGCGAGACCCTTACTCTTTCACCCCCATGGTGGAGGAGGGCACACTCAATAGGCTGCCAAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACGGAAGGATGCGCAGgtaggcaaagtggttacaaaccaaagcttcagtctacacacagccatctc #### Rab1b_ID843_5 --> 0 - 0 Original Alignment GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTTAAT---TGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc Alignment from CESAR GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTTAAT---TGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc Alignment from Spaln_aa2Genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTTAAT---TGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc Alignment from Spaln_nt2Genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTTA---ATTGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc Alignment from Pairagon GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTTA---ATTGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc Alignment from Exonerate_protein2genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTT---AATTGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc Alignment from Exonerate_coding2genome GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTT---AATTGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc Alignment from GeneWise GAGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACTCCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAG tgtcatacctcccttgatctgggtgtggagttgaatctttgtctccccagGAGTCCTATGCCAATGTT---AATTGGCTGCAGGAGATAGATCGCTACACTAGTGAAAATGTCAATCAACTCCTGGTTGGCAACAAAAGTGATCTCACCACCAAGAAGGTTGTGGACAACACCACAGCCAAGgtaaggaggcctgcactgttaggcttttggggcccacattgattcattcc #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa #### Rab3il1_ID2646_2 --> 1 - 0 Original Alignment cCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG aatctgacccctagacctgtgaggcatcccaggctccaattttcctgcagcCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac Alignment from CESAR cCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG aatctgacccctagacctgtgaggcatcccaggctccaattttcctgcagcCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac Alignment from Spaln_aa2Genome CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG aatctgacccctagacctgtgaggcatcccaggctccaattttcctgcagCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac Alignment from Spaln_nt2Genome CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG aatctgacccctagacctgtgaggcatcccaggctccaattttcctgcagCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac Alignment from Pairagon CCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG aatctgacccctagacctgtgaggcatcccaggctccaattttcctgcagCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac Alignment from Exonerate_protein2genome GGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG aatctgacccctagacctgtgaggcatcccaggctccaattttcctgcAGCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac Alignment from Exonerate_coding2genome GGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG aatctgacccctagacctgtgaggcatcccaggctccaattttcctgcAGCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac Alignment from GeneWise TGGAGCGGCCAACCCCAACAAGACGAGGGCCTCCCTGTGGGCCTCTCTGCTATCCCAGTCCCCTGGAAAAACCTAGGCCCCAGCAAAAGTAACAGGGAGTCCTCAGGAGGCCTGGTAGAAGCCTCCACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCCGGCACCTGCTCCACTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAGATCCGAGAGAAGGGCTCCGAGTTCCTAAAGGAGGAGCTATACAAAGCCCAGAAG ctgacccctagacctgtgaggcatcccaggctccaattttcc---TGCAGCCAACCCCAACAGGATGAGGGCCTCCCTGTGGGCCTCTCTGGTATCCCAGTCCCCTGGAAAAATTTAGGCCCCAGCAAAAGTAACAGGGAATCCTCAGGAGGTTTGGTAGAAGCTTCTACTTCCTGGGAGGAGGCCCAGGGTGAGGAACACCTGACACCTGCTCCTCTGGATGTGTCACGCCTGCGCAGTTCCTCCATGGAAATCCGAGAGGAGGGTTTGGAGTTCTTAAAGGAGGAGTTATACAGAGCTCAAAAGgtacgggctccagctccaaggggatgctccaggaaaaggtcggtgctgac #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG tgggaatttggtcaacagttgctttgcttctgttcctcctgacaccacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTGTTCAACAGCGTGCCTCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtaagaacctttccgttgtatccagaccagattctatggacacatcctag #### Rasgrp2_ID1715_14 --> 2 - 1 Original Alignment ctTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAg aagtgttctaggccatggccttgttagggggttctctgtcccctctccagcaTGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAggtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa Alignment from CESAR ctTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAg aagtgttctaggccatggccttgttagggggttctctgtcccctctccagcaTGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAggtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa Alignment from Spaln_aa2Genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG aagtgttctaggccatggccttgttagggggttctctgtcccctctccagCATGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAGgtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa Alignment from Spaln_nt2Genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG aagtgttctaggccatggccttgttagggggttctctgtcccctctccagCATGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAGgtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa Alignment from Pairagon CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG aagtgttctaggccatggccttgttagggggttctctgtcccctctccagCATGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAGgtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa Alignment from Exonerate_protein2genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG aagtgttctaggccatggccttgttagggggttctctgtcccctctccagCATGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAGgtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa Alignment from Exonerate_coding2genome CTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG aagtgttctaggccatggccttgttagggggttctctgtcccctctccagCATGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAGgtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa Alignment from GeneWise TCCTGGGCATCTACAAGCAG---GGCCTTAAATGTAGAGCTTGTGGTGTGAACTGCCACAAGCAATGCAAAGAGCGCCTGTCAGTGGAATGTCGCCGCAGGGCCCAGAGTGTCAGCCTGGAGGGCTCTGCACCCTCTCCCTCACCCACACATACCCACCATCGGGCCTTCAGCTTTTCCCTGCCTCGCCCAGGCAGGCGCAGCTCTCGGCCTCCAG aagtgttctagGCCATGGCCTTGTTAGGGGGTTCTCTGTCCCCTCTCCAGCATGTGGTGTGAACTGTCACAAGCAGTGCAAGGAGCGCTTGTCAGTGGAATGTCGCCGAAGGGCTCAGAGTGTCAGCCTAGAGGGTTCAGCACCCTCTCCCTCACCCACACACACCCACCATAGGGCCTTCAGCTTCTCTTTGCCCCGACCTGGCCGGCGCAGCCCTCGGCCTCCAGgtaagaaagcaggctaacctccaatggcgtagggtcttgccaaagggcaa #### Rbm20_ID11383_10 --> 0 - 0 Original Alignment GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct Alignment from CESAR GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct Alignment from Spaln_aa2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct Alignment from Spaln_nt2Genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct Alignment from Pairagon GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct Alignment from Exonerate_protein2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct Alignment from Exonerate_coding2genome GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct Alignment from GeneWise GCTGGAGCTGAGGAACAGGAAGGCATGGTGGGCATACAGCAGGAAGGGACAGAGTCCTGTGATCCAGAAAACACAAGGACAAAGAAG ggatacataaaacttgtggtcttatttcggtgtctgtctaccttttgcagGCTGGAGCTGGGGAGGAGGAAGGCATGGTGGGTATACAGCAGGAAGGGACAGAGTTGTGTGACCCAGAAAACACAAGAACAAAGAAAgtaagtttgtaccgtctttgtgctgattgtgttatagatcaggatcagct #### Rbp4_ID7523_4 --> 1 - 1 Original Alignment cAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAa taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagcAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGTGCAGCC---TTTGTCCAGCGAGGAagtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac Alignment from CESAR cAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAa taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagcAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGTGCAGCC---TTTGTCCAGCGAGGAagtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac Alignment from Spaln_aa2Genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac Alignment from Spaln_nt2Genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGTGCAG---CCTTTGTCCAGCGAGGAAgtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac Alignment from Pairagon CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGTGCAG---CCTTTGTCCAGCGAGGAAgtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac Alignment from Exonerate_protein2genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac Alignment from Exonerate_coding2genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac Alignment from GeneWise CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA taggtaaaaccttttgccagctcaatgcgctgaatgctctgtacctccagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAAGTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtatgtagtagatgagtggcagtctagcttagatacatagttccctcaac #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAggtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGg gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAggtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAGgtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAGgtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAGgtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAGgtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat Alignment from Exonerate_coding2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAGgtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGGTTGTCCTGG gaattgtgagaagtacttcaccttgtgtccattcactgtgccccttacagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCCTGTGACCTAACAGATGGACTGAAAGTTGTTCTAGgtaaggcccagagactgctgtgaaaacagaatgcaaaagcagcattgaat #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagttGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagttGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGCTATAACATTGAGCAG gacttcaattgtacttggatggatatcttttttattcttcctcttcacagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCGTGGCTATAACATTGAGCAGgtaagtaacaagattcttgtgggtggaagtggggcccaacaagtaattta #### Rela_ID1125_2 --> 2 - 1 Original Alignment atCTGTTTCCCCTCATCTTTCCCTCAg atgttaggcacgaaagtcagttaatagtgacgccggggtttcctttccagatTTCTTTCCTCTCATCTTTCCCTCAggtgagttatccatcagtcctcacttggtagggactaagctgaattggaga Alignment from CESAR atCTGTTTCCCCTCATCTTTCCCTCAg atgttaggcacgaaagtcagttaatagtgacgccggggtttcctttccagatTTCTTTCCTCTCATCTTTCCCTCAggtgagttatccatcagtcctcacttggtagggactaagctgaattggaga Alignment from Spaln_aa2Genome ATCTGTTTCCCCTCATCTTTCCCTCAG atgttaggcacgaaagtcagttaatagtgacgccggggtttcctttccagATTTCTTTCCTCTCATCTTTCCCTCAGgtgagttatccatcagtcctcacttggtagggactaagctgaattggaga Alignment from Spaln_nt2Genome ATCTGTTTCCCCTCATCTTTCCCTCAG atgttaggcacgaaagtcagttaatagtgacgccggggtttcctttccagATTTCTTTCCTCTCATCTTTCCCTCAGgtgagttatccatcagtcctcacttggtagggactaagctgaattggaga Alignment from Pairagon GAC------------------GATCTGTTTCCCCTCATCTTTCCCTCAG atgttaggcacgaaagtcagttaatagtGACGCCGGGGTTTCCTTTCCAGATTTCTTTCCTCTCATCTTTCCCTCAGgtgagttatccatcagtcctcacttggtagggactaagctgaattggaga Alignment from Exonerate_protein2genome GATCTGTTTCCCCTCATCTTTCCCTCAG atgttaggcacgaaagtcagttaatagtgacgccggggtttcctttccaGATTTCTTTCCTCTCATCTTTCCCTCAGgtgagttatccatcagtcctcacttggtagggactaagctgaattggaga Alignment from Exonerate_coding2genome atgttaggcacgaaagtcagttaatagtgacgccggggtttcctttccagatttctttcctctcatctttccctcaggtgagttatccatcagtcctcacttggtagggactaagctgaattggaga Alignment from GeneWise atgttaggcacgaaagtcagttaatagtgacgccggggtttcctttccagatttctttcctctcatctttccctcaggtgagttatccatcagtcctcacttggtagggactaagctgaattggaga #### Rela_ID1132_9 --> 2 - 1 Original Alignment atGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATg ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagatGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATggtaggccggggcaactacagagagaggggtagacgggacaacaaagacct Alignment from CESAR atGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATg ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagatGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATggtaggccggggcaactacagagagaggggtagacgggacaacaaagacct Alignment from Spaln_aa2Genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagATGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggccggggcaactacagagagaggggtagacgggacaacaaagacct Alignment from Spaln_nt2Genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagATGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggccggggcaactacagagagaggggtagacgggacaacaaagacct Alignment from Pairagon ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagATGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggccggggcaactacagagagaggggtagacgggacaacaaagacct Alignment from Exonerate_protein2genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagATGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggccggggcaactacagagagaggggtagacgggacaacaaagacct Alignment from Exonerate_coding2genome ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagATGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggccggggcaactacagagagaggggtagacgggacaacaaagacct Alignment from GeneWise ATGATCGCCACCGGATTGAAGAGAAGCGCAAAAGGACCTATGAGACCTTCAAGAGTATCATGAAGAAGAGTCCTTTCAATG ggggggtgcagcccaaagaagtagaccatccatctctttgtctgacacagATGATCGCCACAGGATTGATGAGAAGCGAAAGAGGACCTATGAGACCTTTAAGAGTATTATGAAGAAGAGTCCTTTTAATGgtaggccggggcaactacagagagaggggtagacgggacaacaaagacct #### Rfk_ID4225_3 --> 0 - 1 Original Alignment GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAggtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg Alignment from CESAR GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAggtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg Alignment from Spaln_aa2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAGgtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg Alignment from Spaln_nt2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAGgtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg Alignment from Pairagon GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAGgtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg Alignment from Exonerate_protein2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAGgtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg Alignment from Exonerate_coding2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAGgtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg Alignment from GeneWise GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccacctgggccatctgaatctgcctctgcctgtgctgttctagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTAAAACCGGAAAAGAACTTTGATTCTTTAGgtgaggattatatattaaacttaggcattgtgagagctggttctgcaagg #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacctttccctagactctctctctctcatacataaaggGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacctttccctagactctctctctctcatacataaaggGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Pairagon AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from GeneWise AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacaggaGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGggtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacaggaGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGggtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacagGAGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacagGAGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGA---GAGG gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacagGAGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacagGAGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacagGAGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctaaattccagacctccagtaagaatacgtgtatctgtctttacagGAGAAAATGCAGGAGCCGATCAGTTCCTTCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCGGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtgtgtatccctcattgcttctatagttggacctggtacttgtggataaa #### Rnls_ID6819_2 --> 1 - 1 Original Alignment tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagtTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTggtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat Alignment from CESAR tTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAg gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagtTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTggtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat Alignment from Spaln_aa2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagTTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTGgtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat Alignment from Spaln_nt2Genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagTTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTGgtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat Alignment from Pairagon TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagTTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTGgtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat Alignment from Exonerate_protein2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagTTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTGgtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat Alignment from Exonerate_coding2genome TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagTTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTGgtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat Alignment from GeneWise TTTTTATGAGGAACTGTTAGCTCATGGAATTTTGAAGCCTCTGACATCCCCCATTGAAGGAATGAAAGGGAAGGAAGGAGATTGCAACTTTGTGGCACCTCAAGGATTTTCTTCAGTTATCAAGTACTACTTGAAAAAGTCAG gtaagacaattttagagttaactacaccctgtccctcttcttcctgacagTTTTTATGAGGGACTTTTAACTCATGAAATCTTAAAGCCTCTAACCTCCCCCATCGAAGGAATGAAAGGAAAAGAAGGAGATTGCAACTTTGTAGCACCTCAAGGATTTTCTTCAGTTATTAAGTACTACTTGAAAAAGTCTGgtaagaggtggatttttggtcattcgtggggtaatagtggtgggctaaat #### Rorb_ID4530_9 --> 2 - 0 Original Alignment acCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagacCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg Alignment from CESAR acCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagacCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg Alignment from Spaln_aa2Genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagACCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg Alignment from Spaln_nt2Genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagACCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg Alignment from Pairagon ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagACCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg Alignment from Exonerate_protein2genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagACCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg Alignment from Exonerate_coding2genome ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagACCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg Alignment from GeneWise ACCGAGCCTGGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCAGAAGAACCACCTGGATGATGAGACCCTGGCAAAG gacaaatttcctgccccacctcattaatatctttgtgttttcatttctagACCGAGCGTGGCTCATTGAACCAAGAAAGGTTCAGAAGCTTCAGGAAAAGATTTACTTTGTGTTACAACATGTGATTCAGAAGAACCATTTAGATGATGAGACCCTTGCAAAGgtgagtctcaaaattacacagatactcaccctaggaacatatacccaagg #### Rpp30_ID7080_2 --> 2 - 0 Original Alignment tgGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagtgGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta Alignment from CESAR tgGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagtgGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta Alignment from Spaln_aa2Genome TGGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagTGGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta Alignment from Spaln_nt2Genome TGGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagTGGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta Alignment from Pairagon TGGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagTGGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta Alignment from Exonerate_protein2genome TGGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagTGGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta Alignment from Exonerate_coding2genome TGGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagTGGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta Alignment from GeneWise TGGGATACTCAGTTGTTGCCATCAATCACATTGTTGACTTTAAGGAAAAGAAACGG taagtgttataatgccctcaattcaattataatctgttttttatcttcagTGGGATACTCAATTGTTGCCATCAATCACATCGTTGACTTTAAGGAAAAGAAACGGgtgagcaatataactttctacctgactaactgtgtatcagcagacctgta #### Rpp30_ID7081_3 --> 0 - 0 Original Alignment GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat Alignment from CESAR GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat Alignment from Spaln_aa2Genome GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat Alignment from Spaln_nt2Genome GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat Alignment from Pairagon GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat Alignment from Exonerate_protein2genome GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat Alignment from Exonerate_coding2genome GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat Alignment from GeneWise GAAATTGAAAAGCCAATAGCAGTTTCTGAACTCTTCACAACTTTACCCATCGTACAG atctctgacttaaaggctgacctgttgatgtcactctactttccttctagGAAATTGAAAAGCCAATAGCAGTTTCTGAGCCCTTCCCAACTTTCCCTATTGTACAGgtgagtactatctgactgcttatttatgactgcttctttaattcaaacat #### Rpp30_ID7082_4 --> 0 - 0 Original Alignment GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt Alignment from CESAR GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt Alignment from Spaln_aa2Genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt Alignment from Spaln_nt2Genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt Alignment from Pairagon GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt Alignment from Exonerate_protein2genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt Alignment from Exonerate_coding2genome GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt Alignment from GeneWise GGAAAATCAAGACCAATTAAAATTTTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTG tcactctcatgtgtacttcatctttcatcctaccttttctttggaaacagGGGAAACCAAGACCAATTAAGATTTTGACTAGACTAACAATAATTGTTACAGATCCAGCTCACTGCAATATTTTAgtaaatgtaactcttttgtctttgttgcaactttgctaccaaaaataatt #### Rpp30_ID7083_5 --> 0 - 0 Original Alignment AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc Alignment from CESAR AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc Alignment from Spaln_aa2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc Alignment from Spaln_nt2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc Alignment from Pairagon AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc Alignment from Exonerate_protein2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc Alignment from Exonerate_coding2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc Alignment from GeneWise AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT acagtgcttgcatcacattttttgataacaatcctaatctttttttttagAGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCATgtgagtagcatatgaggtagagcaacatataaggatgtaagtgggatagc #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG tgcaagggattgcgatacctgcattacttttgtctctataaaataaacagGGTTTTACGTATGTGGCACCTTTCGTCCTGGATAGCATCAAAGAGGGTTTTTCATTCCAACCCAAGCTGCGCTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaagcggcaaggcagataaatgtctagtcaggcactcccaaaaatggat #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagcTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGggtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagcTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGggtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtgtggtaggtattaagccctgcctacacttttttttcccccccctcagCTTCTACCTGGCAGAGATCACACTGGCACTAGGCCATCTCCATTTCCATGGCATCATCTACCGTGACCGCAAGCCTGAAAACATCATGCTCACCAGTCAGGgtgagtaggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt #### Rps6kb2_ID376_6 --> 2 - 2 Original Alignment gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagttGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCtggtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctact Alignment from CESAR gtGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCtg acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagttGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCtggtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctaca Alignment from Spaln_aa2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagTTGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCTGgtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctact Alignment from Spaln_nt2Genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagTTGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCTGgtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctact Alignment from Pairagon GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagTTGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCTGgtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctact Alignment from Exonerate_protein2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagTTGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCTGgtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctact Alignment from Exonerate_coding2genome GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagTTGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCTGgtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctact Alignment from GeneWise GTGGTGAGCTCTTCACACATCTTGAGCGAGAAGGCATCTTCCTGGAAGACACAGCCTG acaagctaaatttgctggagcaagtcagctcgtttgctgtgctgttcaagTTGGTGAGCTTTTCACACATCTTGAACGGGAAGGCATATTTCTGGAAGACACGGCCTGgtaggtgtctgcagggtctctggtgtggtaggtattaagccctgcctact #### Rps6kb2_ID378_4 --> 0 - 0 Original Alignment GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc Alignment from CESAR GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc Alignment from Spaln_aa2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc Alignment from Spaln_nt2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc Alignment from Pairagon GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc Alignment from Exonerate_protein2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc Alignment from Exonerate_coding2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc Alignment from GeneWise GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgccggataagggaaaagaagttaatcatgtgtctctgtcctctctatagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaggttgtttgcttagccaataaaaaaagtaaccattgacacccagacc #### Rrp12_ID8290_33 --> 0 - 2 Original Alignment AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCag gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACaggtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa Alignment from CESAR AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCag gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACaggtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa Alignment from Spaln_aa2Genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa Alignment from Spaln_nt2Genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa Alignment from Pairagon AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa Alignment from Exonerate_protein2genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa Alignment from Exonerate_coding2genome AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa Alignment from GeneWise AAGGCAAAAGGCGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGCAG gaatcctttaggacagtttaaggcagagcactgtagtttttcctctgcagAAGGCAAAAGGTGATGTAAAGAAGAAAGGCCGCCTAGATCCCTATGCATATGTTCCACTCAACAGATCTAAACTCAACCACAGgtatctcagcatgtaggctccttccccagtgcatgtagtgtaggtgtgaa #### Rrp12_ID8291_32 --> 2 - 0 Original Alignment ctGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagctGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta Alignment from CESAR ctGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagctGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta Alignment from Spaln_aa2Genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagCTGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta Alignment from Spaln_nt2Genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagCTGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta Alignment from Pairagon CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagCTGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta Alignment from Exonerate_protein2genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagCTGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta Alignment from Exonerate_coding2genome CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagCTGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta Alignment from GeneWise CTGGAGGCTCTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAG agggtcttccctggctttgcctggcttttggtttttctcctcgtgtgcagCTGGAGGGTCTGGGATCCATCGCCCTGTGGCAAAGAAGGCAGCACCTGGAGCTGAATACAAGGCCACAgtaggtactgggaggagccaagatagccaaataggaacagctccaatcta #### Rrp12_ID8293_30 --> 2 - 0 Original Alignment ggGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagggGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg Alignment from CESAR ggGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagggGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg Alignment from Spaln_aa2Genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagGGGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg Alignment from Spaln_nt2Genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagGGGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg Alignment from Pairagon GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagGGGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg Alignment from Exonerate_protein2genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagGGGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg Alignment from Exonerate_coding2genome GGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagGGGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg Alignment from GeneWise -----GATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGT ccttttggctcctctctaatgacctcctaccgcctctgtcgctcgcgcagGGGCAGATGAAGATATGACTGATGCAATGGCGGATGCCAGTGTAAGAAGTgtaggcagttctttcagctgatccaatagcacccataccaaacgagcctg #### Rrp12_ID8316_7 --> 0 - 1 Original Alignment ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAggtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa Alignment from CESAR ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAggtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa Alignment from Spaln_aa2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa Alignment from Spaln_nt2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa Alignment from Pairagon ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa Alignment from Exonerate_protein2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa Alignment from Exonerate_coding2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa Alignment from GeneWise ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ccctgttgggcagttaatgatggtggagctattttcttggtatcttttagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTCATGTTTGGTGAAAAGGCCCCAGCCCATCATCCTGCTGCTGTCTCCACGGCTAAGTTTTGCATCCAGGAGATTGAGAAGTCTGGAGgtatgtttaccaaggttcgagagtgagtggggaaacaggagtagtcgtaa #### Rrp12_ID8321_2 --> 2 - 0 Original Alignment gaAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcaggcATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca Alignment from CESAR gaAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcaggcATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca Alignment from Spaln_aa2Genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcagGCATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca Alignment from Spaln_nt2Genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcagGCATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca Alignment from Pairagon GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcagGCATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca Alignment from Exonerate_protein2genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcagGCATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca Alignment from Exonerate_coding2genome GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcagGCATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca Alignment from GeneWise GAAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGCAAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCACGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAACTCAGCTGCTCACAAGGAG aataaaaagacctatactagcggccattctcgtggctgttcactttgcagGCATGAGTGATCTAACAGTGGATGCTGTAAAGTTGCATAATGAGCTTCAGTCAAGGACCCTGAGCCTGGGTAAAAGTCAAGCTCCTGAAACAAGCATGGATCAAGATCCAGAAGATGCTTTCACTGAGAAGTCTTCAGGCATGTTTCTGAGTGGCTTATCTGACTGCACAAATGTCACGTTCAGTGAGGCTCAACGCTTTTGGGAGTCTAACGCAGTTGCTCACAAAGAGgtaaggtattgcttattgagacaggtatcagcacattcagcttggcttca #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggtaattcaaaagacataatttacacactgacaactatgtccccacaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggtaattcaaaagacataatttacacactgacaactatgtccccacaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCC------CAAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAA--------------------------------------------------- ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG------GAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGGTGAGCGGTTGAGTAATAGGGGCCAGGGTAAATCTGCAGGCAAGGGCACT #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagggGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttacttttggatttcctttagCAAA Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagggGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttccttttttttttttaacagCAAA Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttacttttggatttcctttagCAAA Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttacttttggatttcctttagCAAA Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttacttttggatttcctttagCAAA Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttacttttggatttcctttagCAAA Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttacttttggatttcctttagCAAA Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG CAAA ctgggatgcttaggctagaatacgattgtcactctgactttccttggcagGGGTACTCCAGGATGGAGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATGACTTAGCACAGgtaagactggtaagtctgggagaatttacttttggatttcctttagCAAA #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagtAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagtAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGCCTCCAG------AAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacacaagggtggggaagctgggctttgtgctgtgtctcatcagTAAAGTAAAAACTCTGGGAGAAGACGACCCCTGGCTGGATGATACTGCAGCGTGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgttggcacacaaggttcttcatgatcactgtctacatgtcaatttatcca #### Sart1_ID972_3 --> 1 - 1 Original Alignment tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAg attggaagacccccttctcagggcataaagagggacctgcttttcctcagtAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAggtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt Alignment from CESAR tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAg attggaagacccccttctcagggcataaagagggacctgcttttcctcagtAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAggtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt Alignment from Spaln_aa2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagacccccttctcagggcataaagagggacctgcttttcctcagTAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAGgtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt Alignment from Spaln_nt2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagacccccttctcagggcataaagagggacctgcttttcctcagTAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAGgtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt Alignment from Pairagon TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagacccccttctcagggcataaagagggacctgcttttcctcagTAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAGgtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt Alignment from Exonerate_protein2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagacccccttctcagggcataaagagggacctgcttttcctcagTAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAGgtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt Alignment from Exonerate_coding2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagacccccttctcagggcataaagagggacctgcttttcctcagTAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAGgtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt Alignment from GeneWise TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG attggaagacccccttctcagggcataaagagggacctgcttttcctcagTAAACTTCAAGCAAAGTTGGGGCTAAGGCTGCTGGAGGTCAATGCTGTTCAAAAAGgtatttacacagctggacatcaaggtctagtgggcagagatgtggtactt #### Scd1_ID9005_2 --> 0 - 1 Original Alignment ATCTCCAGTTCTTACACGACCACCACCACC---------------ATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg caagtattaagccctatggacagggccctttcctctcaacccctctgcagATCTCCAGTTCTTACACAACTACCATCACCACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGT---CAAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTCCTTT---------ACATGCCTTTTTggtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat Alignment from CESAR ATCTCCAGTTCTTACACGACCACCACC---------------ACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCg caagtattaagccctatggacagggccctttcctctcaacccctctgcagATCTCCAGTTCTTACACAACTACCATCACCACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGT---CAAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTCC---------TTTACATGCCTTTTTggtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat Alignment from Spaln_aa2Genome ATCTCCAGTTCTTAC---------------ACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caagtattaagccctatggacagggccctttcctctcaacccctctgcagATCTCCAGTTCTTACACAACTACCATCACCACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGT---CAAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTCC---------TTTACATGCCTTTTTGgtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat Alignment from Spaln_nt2Genome ATCTCCAGTTCTTACACGACCACCACCACCAT---------------CACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caagtattaagccctatggacagggccctttcctctcaacccctctgcagATCTCCAGTTCTTACACAACTACCATCACCACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGTC---AAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTC-------CTTTACA--TGCCTTTTTGgtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat Alignment from Pairagon ATCTCCAGTTCTTACACGACC---------------ACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caagtattaagccctatggacagggccctttcctctcaacccctctgcagATCTCCAGTTCTTACACAACTACCATCACCACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGTC---AAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTC---------CTTTACATGCCTTTTTGgtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat Alignment from Exonerate_protein2genome ATCTCCAGTTCTTACACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caagtattaagccctatggacagggccctttcctctcaacccctctgcagatctccagttcttacACAACTACCATCACCACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGT---CAAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTCC---------TTTACATGCCTTTTTGgtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat Alignment from Exonerate_coding2genome ACGACCACCACCACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caagtattaagccctatggacagggccctttcctctcaacccctctgcagatctccagttcttacacaactaccatcaccACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGT---CAAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTCC---------TTTACATGCCTTTTTGgtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat Alignment from GeneWise CCGGCCCACATGCTCCAAGAGATCTCCAGTTCTTACACGACCACCACC---ACCATCACTGCACCTCCCTCCGGAAATGAACGAGAGAAGGTGAAGACGGTGCCCCTCCACCTGGAAGAAGACATCCGTCCTGAAATGAAAGAAGATATTCACGACCCCACCTATCAGGATGAGGAGGGACCCCCGCCCAAGCTGGAGTACGTCTGGAGGAACATCATTCTCATGGTCCTGCTGCACTTGGGAGGCCTGTACGGGATCATACTGGTTCCCTCCTGCAAGCTCTACACCTGCCTCTTCG caagtattaagccctatggacagggccctttcctctcaaccCCTCTGCAGATCTCCAGTTCTTACACAACTACCATCACCACAACTACCATCACCATTACGGCACCTCCATCTGGAAATGAGAGAGAAAAGGTGAGGACAGTGCCTCTCCATCTGGAGGAAGACCTTCGT---CAAATGAGAGAAGACATTCATGAGCCCACCTATCAGGATGAGGAGGCACCCCCACTCAGATTGGAGTACTTCTGGAGGAACATAATTCTCATGGTTCTGCTGCACTTAGGGAGCCTGTATGGAATTATACTGATAACCTCC---------TTTACATGCCTTTTTGgtaagcatccctcttggttttctgtttgcactttaaagaagtcctctcat #### Scd2_ID8989_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcaggTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTggtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGg cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcaggTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTggtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcagGTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcagGTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGC---CCTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcagGTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGC---CCTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcagGTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcagGTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCGTCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTGCGTTAGCACCTTCTTGCGATACGCCGTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCCCACCTCTACGGATATCGCCCCTACGACAAGAACATTAGCTCTCGGGAGAACATCTTGGTTTCCATGGGAGCTGTGG cagacagctcctattcgcagctcctatcgcttctctctcctcctggtcagGTACTACAAACCTGGCCTTTTGCCCATGTGCTTTGTCCTGCCCACACTTGTGCCCTGGTACTGCTGGGGTGAGACGTTTGTAAACAGCCTGTGTATTAGCACCTTCCTGCGATATGCTGTGGTGCTTAATGCCACTTGGCTGGTGAATAGTGCTGCC---CTTTATGGATATCATCCCTTTGACAAGAACATAAGCTCACGGGAGAACATCCTGGTTTCCATGGGAGCTGTTGgtaagaaccgacagtgggacagaaccaccaccttagggctatggacataa #### Scd3_ID8975_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGGTA---TTCCAGAGGcggtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGGTA---TTCCAGAGGcggtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGGTA---TTCCAGAGGCGgtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGG---TATTCCAGAGGCGgtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGG---TATTCCAGAGGCGgtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGGTA---TTCCAGAGGCGgtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGGTA---TTCCAGAGGCGgtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGAGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG tgcccacaagggtctagctatccatccttcctttctccctttggaggcagAATGATGTGTATGAATGGGCTCGAGATCCCCGAGCTCACCACAAGTTCTCAGAGACACATGCTGACCCTCATAACTCCCGGCGTGGCTTCTTCTTCTCTCATGTGGGTTGGCTACTTGTGCGTAAACACCCAGCTGTAAAAGAGAAGGGCGGCAAACTAGACATGTCAGATCTCAAGGCCAAGAAGTTGGTA---TTCCAGAGGCGgtgagtggggggtctggtttgtgggagttgagacttcaaggtcttggctc #### Scd4_ID8995_3 --> 2 - 0 Original Alignment gaGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacaggaGTTTTCTACAACGTGGTTGCTGGTTTGGGC---ACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt Alignment from CESAR gaGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacaggaGTTTTCTACAACGTGGTTGCTGGTTTGGGC---ACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt Alignment from Spaln_aa2Genome GAGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacagGAGTTTTCTACAACGTGGTTGCTGGTTTGGGC---ACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt Alignment from Spaln_nt2Genome GAGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacagGAGTTTTCTACAACGTGGTTGCTGGTTTGGG---CACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt Alignment from Pairagon GAGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacagGAGTTTTCTACAACGTGGTTGCTGGTTTGGG---CACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt Alignment from Exonerate_protein2genome GAGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacagGAGTTTTCTACAACGTGGTTGCTGGTTTGGGC---ACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt Alignment from Exonerate_coding2genome GAGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacagGAGTTTTCTACAACGTGGTTGCTGGTTTGGGC---ACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt Alignment from GeneWise GAGTATTCTACAACGTGGTTGCCGGTTTGGGCATCACAGCCGGAGCGCATCGCTTGTGGAGCCACCGAACCTATAAAGCAAGGCTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAG gcccagcaggataaaaaatggttactgggagaatctcttctccatgacagGAGTTTTCTACAACGTGGTTGCTGGTTTGGGC---ACAGCTGGCACTCATCGCTTGTGGAGTCATCAAACCTATAAGGCAAGACTGCCCCTACGCATCTTCCTCATCATGGCCAATACCATGGCTTTCCAGgtaggggcccgtccatgatgcacactgtccttttcctgcgagttaagctt #### Scd4_ID8996_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAaggtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAaggtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAAGgtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAAGgtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAAGgtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAAGgtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAAGgtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTCTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACATCCGGCTGTCAAAGAGAAGGGCAAAAACCTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cctggaccggagtcgtaggaccaagaggtgtgactactggatgttcctagAATGATGCATATGAATGGGCCCGGGAACACAGGGCCCACCACAAGTTTTCAGAAACTCATGCTGACCCTCACAATTCTCGCCATGGCTTCTTCTTCCCTCATGTAGGCTGGCTACCTGTGCGTAAACATCCAGCAGTCAAAGAGAAGGGAAAGAACCTGGAGATGTCAGACCTGAAAGCTGAGAAGCTGGTGATGTTCCGGAGAAGgtaagtagatgggtggaggtgggggtggaatgggcacagtgccctaggaa #### Scd4_ID8997_5 --> 1 - 1 Original Alignment gTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAg atgcctgtgggcctttccatgagcttctgaattctgttctggttttctaggTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGggtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat Alignment from CESAR gTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAg atgcctgtgggcctttccatgagcttctgaattctgttctggttttctaggTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGggtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat Alignment from Spaln_aa2Genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgtgggcctttccatgagcttctgaattctgttctggttttctagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGGgtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat Alignment from Spaln_nt2Genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgtgggcctttccatgagcttctgaattctgttctggttttctagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGGgtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat Alignment from Pairagon GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgtgggcctttccatgagcttctgaattctgttctggttttctagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGGgtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat Alignment from Exonerate_protein2genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgtgggcctttccatgagcttctgaattctgttctggttttctagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGGgtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat Alignment from Exonerate_coding2genome GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgtgggcctttccatgagcttctgaattctgttctggttttctagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGGgtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat Alignment from GeneWise GTACTACAAGCTAGCTGTCACGCTCATGTTCATCATTCTGCCCACACTGGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGCTTATGCGTCTCGAATTTCCTGCGGTATGCTGTGCTTCTAAACTTCACTTGGCTGGTGAACAGTGCGGCCCACCTCTACGGATACCGGCCCTATGACAGGGGCATTGGTGCCCGGGAGAATCCCTTCGTTTCAATGGCATCTTTAG atgcctgtgggcctttccatgagcttctgaattctgttctggttttctagGTACTACACACTAGCTGTCAAACTAATGTTCATCATTCTGCCCACACTTGTACCCTGGTACTTGTGGGGTGAGACTTTTCAACACAGTTTATGTGTCTCTAACTTCCTCCGCTATGCTGTGCTACTAAACTTCACTTGGCTGGTGAACAGTGCAGCCCATCTTTATGGATATCGGCCCTATGAGAGGGGCATTGGTGCACGGGAGAATTCCTTTGTCTCAATGGCATCATTGGgtcagtcttcagcttgctgcatatacctccaacacatagcaaagctccat #### Sdhaf2_ID2855_3 --> 1 - 1 Original Alignment cCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAg actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagcCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAggtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc Alignment from CESAR cCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAg actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagcCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAggtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc Alignment from Spaln_aa2Genome CCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAG actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagCCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAGgtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc Alignment from Spaln_nt2Genome CCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAG actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagCCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAGgtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc Alignment from Pairagon CCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAG actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagCCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAGgtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc Alignment from Exonerate_protein2genome CCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAG actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagCCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAGgtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc Alignment from Exonerate_coding2genome CCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAG actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagCCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAGgtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc Alignment from GeneWise CCTGTTTGCTAAAGAGTATCTGCACAACATGACAGAGAAGCAGCTGAACCTCTATGATCGCCTGATTAACGAGCCTAGCAATGACTGGGATATTTACTACTGGGCCACAG actcttacttgatgacaacgccctgctaccagtaaaacatttgttcttagCCTGTTTGCCACAGAGTATCTGCATAAAATGACAGAGAAGCAGTTGAACCTCTATGATCGCTTGATTAATGAACCTAGTAATGACTGGGTTATTTACTACTGGGCCCCAGgtaagacaagtgctgagttgtatcctggtttcgatcatggtaacaagctc #### Sdhaf2_ID2856_2 --> 0 - 2 Original Alignment GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTag gtaacactagcaattgtctaacagcaatttacttgattttaaacttacagGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTaggtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta Alignment from CESAR GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTag gtaacactagcaattgtctaacagcaatttacttgattttaaacttacagGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTaggtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta Alignment from Spaln_aa2Genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagcaattgtctaacagcaatttacttgattttaaacttacagGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta Alignment from Spaln_nt2Genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagcaattgtctaacagcaatttacttgattttaaacttacagGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta Alignment from Pairagon GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagcaattgtctaacagcaatttacttgattttaaacttacagGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta Alignment from Exonerate_protein2genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagcaattgtctaacagcaatttacttgattttaaacttacagGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta Alignment from Exonerate_coding2genome GCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG gtaacactagcaattgtctaacagcaatttacttgattttaaacttacagGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta Alignment from GeneWise GCGGTGGTCACCTTGATCCCGACGCTGGCGCGGGCACTGTCAAAGCACAGTCTGCTGTCTCCCTTGCCTAGTGTGACATCATTCAGACGCTTCTACAGAGGTGACAGCCCAACAGACTCTCAAAAAGACATGATTGAAATCCCTTTGCCTCCGTGGCAGGAGAGAACTGATGAATCCATAGAAACCAAAAGAGCCCGCTTACTCTATGAGAGCAGAAAGAGGGGGATGCTGGAGAACTGCATTCTCCTTAG acactagcaattgtctaACAGCAATTTACTTGATTTTAAACTTA---CAGGCACTATCGAAACATAGTCTGCTATCTCCCTTACCTAGTGTAACATCATTCAGACGTTTCTACAGAGGCGACAGTCCAACAGACTCGCAAAAAGACATGATTGAAATCCCTTTGCCGCCATGGCAGGAGAGAACTGATGAGTCCATAGAAACTAAAAGAGCTCGATTACTCTATGAGAGCAGGAAAAGGGGGATGCTGGAGAACTGCATTCTACTTAGgtgcgtagcagctctggttgtcactcttacttgatgacaacgccctgcta #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat Alignment from CESAR AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat Alignment from Pairagon AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat Alignment from GeneWise AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcgggagccaatattaggatcacggtctcttcttcctattctagAAAACAAAAAAGAAGCTAGAGGAGGCAGCCCGACACCTTGAATGTCTATATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcaggggacctacacttctacctagttccgaggagat #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc #### Sec31b_ID9032_20 --> 2 - 1 Original Alignment ctTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAg ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctaggtTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTggtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc Alignment from CESAR ctTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAg ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctaggtTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTggtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc Alignment from Spaln_aa2Genome CTTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAG ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctagGTTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTGgtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc Alignment from Spaln_nt2Genome CTTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAG ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctagGTTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTGgtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc Alignment from Pairagon CTTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAG ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctagGTTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTGgtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc Alignment from Exonerate_protein2genome CTTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAG ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctagGTTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTGgtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc Alignment from Exonerate_coding2genome CTTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAG ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctagGTTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTGgtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc Alignment from GeneWise CTTTATCTCCGCCACAGCTGTCCGGAGGACAAAGTGTTCCAGCTGTAAACCCAGCTGGATTCTGTGGCGCATGGCCTCTTCCTGGCCCCACTCCAGTCATGGCGTCCCCAGACTTCATGCAGCCCGGCTCTACCCATCTGCCTGAAACTCCTAGACTCCTCCCTCTGCCTCCTGTGGGACCACCAGGTCCCAACCCTCTGAGCTCCCAGCTCCCAGCCTCTCCTGTCACTTTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCGTGCTCTAGTGCACTCCCGAGCTCTGGCATCTTGGCCACTTGTCCAG ctctctggctggtaatagtaatttattcttgtgtgaccttcctgctctagGTTTGTCTCCACCACAGCTGTCGGGTGGACAAACTGTTCCAGCTGTAAATCCAGCTGGATTCTGTGGCGCATGGCCTCTCCCTGGCCCAACTCCAGTTATGGCATCCCCAGACTTCATGCAGCCTGGTTCCACTCATCTGCCTGAAACTCCTAGACTCCTTCCTCTGCCACCAGTTGGACCACCAGGTCCCAACCCTTTGAGCTCCCAGCTCCCAGCTTCTCCTGTCACATTCTCTGTGGCTCCCCCTCCTGGAGGTCCAAGAGCACCATGCTCCAGTGCACTCCCAAGCTCTGGTATATTGGCTACTTGTCCTGgtgcgccctttttctagtagctgcttattgataatcgctacctcccaccc #### Sec31b_ID9033_19 --> 0 - 1 Original Alignment GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTg catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTggtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga Alignment from CESAR GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTg catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTggtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga Alignment from Spaln_aa2Genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTGgtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga Alignment from Spaln_nt2Genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTGgtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga Alignment from Pairagon GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTGgtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga Alignment from Exonerate_protein2genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTGgtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga Alignment from Exonerate_coding2genome GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTGgtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga Alignment from GeneWise GTCCCAGCTCCATCTGTGAGGCCGAGGACCACAGCTCAGCCGTCATCAGTGATGCCCTTCAGCCCCTCCCAGCCCAGCCCTTCTCAGGGCTCAAGTGACCACAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTCGTCCCTGGAGTAAGGCCTG catcatgcaatgcaccatttccaaaagtcttggcttctgtcttcccacagGTCCCAGCTCCATCTGTGAGGCCGAGAACCACAGCTCAGCCATCATCAGTGATGCCTTTTAGCCCATCGCAACCTAGACCTTCTCAGGGCTCAAGTGACCATAGGGTCCTTAGGCCCCAGGCAATCCTGCCTGGGCATTTTGTCCCTGGAGTACGGCCTGgtaagtaatagagagaggtattgtcccagtatacaagctctcagtggaga #### Sec31b_ID9036_16 --> 2 - 0 Original Alignment acATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagacATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag Alignment from CESAR acATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagacATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag Alignment from Spaln_aa2Genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag Alignment from Spaln_nt2Genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag Alignment from Pairagon ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag Alignment from Exonerate_protein2genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag Alignment from Exonerate_coding2genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag Alignment from GeneWise ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG ggggagtgaagagaagcaaagatggtaaaactttctctttttaaatctagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtatctctcctctacaaagttctagtcacttgctaagctcctcaaatgag #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACT---GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACT---GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa #### Sec31b_ID9038_14 --> 2 - 0 Original Alignment acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagatACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from CESAR acACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagatACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_aa2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Spaln_nt2Genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Pairagon ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_protein2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from Exonerate_coding2genome ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca Alignment from GeneWise ACACTGATGGACTCCTGAGCCAGGCTCTGCTGCTCGGGGAACTGCGGTCTGCTGTGGAGCTGTGTTTGAAGGAGGAACGCTTTGCTGATGCCATCATCCTGGCTCAGGCTGGGGATGCAGAGCTGCTCAAGTGGACACAAGAACGCTACCTAGCCAAGAGGAGAACCAAAACCTCCTCG ggaagcaattgggtgagtgtgagacagccccactgcccttctccccctagATACTGATGGACTCCTGAGCCAGGCTCTACTACTTGGGGAACTGCAATCTGCTGTAGAGCTGTGTTTGAAGGAGGAACGATTTGCAGATGCTGTCATTCTGGCTCAGGGTGGGGATGCAGAGTTGCTTAAATGGACCCAAGAGCGGTATCTAGCCAAGAGGAGAACAAAAACCTCTTCAgtgtgtcctgtcatccataattgggagtggggatggtctgcaagagggca #### Sec31b_ID9046_6 --> 0 - 2 Original Alignment ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCag actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCaggtatgggctacaccccaataacacctgtggggctcattgagccatgtgta Alignment from CESAR ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTG---ATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCag actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCaggtatgggctacaccccaataacacctgtggggctcattgagccatgtgta Alignment from Spaln_aa2Genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCAGgtatgggctacaccccaataacacctgtggggctcattgagccatgtgta Alignment from Spaln_nt2Genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCGGTG---ATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCAGgtatgggctacaccccaataacacctgtggggctcattgagccatgtgta Alignment from Pairagon ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCC---GGTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCAGgtatgggctacaccccaataacacctgtggggctcattgagccatgtgta Alignment from Exonerate_protein2genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCAGgtatgggctacaccccaataacacctgtggggctcattgagccatgtgta Alignment from Exonerate_coding2genome ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCAGgtatgggctacaccccaataacacctgtggggctcattgagccatgtgta Alignment from GeneWise ATGAACTGCTCGGGCCTGGCCTGGAACCCAGACATAGCCACTCAGTTAGTGCTGTGCTCAGAAGACGACCAACTCCCG---GTGATTCAGTTGTGGGACCTGCGCTTCGCTTCGTCACCCTTGAAGGTGCTGGAGAGCCACAGCAG actgaaacatttgtcacattacccactggttttcttgtattttcttccagATGAACTGCTCAGGCCTAGCTTGGAATCCAGATATAGCCAATCAATTAGTGTTGTGCTCAGAAGATGACCAACTGCCTGTGGTCATTCCATTGTGGGATCTGCGTTTTGCTTCATCACCCTTGAAGGTTTTGGAGAGTCACAGCAGgtatgggctacaccccaataacacctgtggggctcattgagccatgtgta #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gtttggtgggacaatatggacagtatcctcttttctttcttcctttgtagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtgagtaatggttgagcaatgacggcaatcggctgtcaaagtgacagaca #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagcaGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagcaGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcccccagttaaagagttgatgctggcttcgttttgcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTAGACAATCTAGTTATCTCACCAATGCAAgtgaggtagtgttactatggtgagagtcaccagttattttcccacaccta #### Sf1_ID1656_2 --> 2 - 1 Original Alignment acTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAg cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacagatTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAggtatggaggtttaatatgataagggagtctcagattgttattagcttaat Alignment from CESAR acTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAg cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacagatTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAggtatggaggtttaatatgataagggagtctcagattgttattagcttaat Alignment from Spaln_aa2Genome ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAGgtatggaggtttaatatgataagggagtctcagattgttattagcttaat Alignment from Spaln_nt2Genome ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAGgtatggaggtttaatatgataagggagtctcagattgttattagcttaat Alignment from Pairagon ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAGgtatggaggtttaatatgataagggagtctcagattgttattagcttaat Alignment from Exonerate_protein2genome ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAGgtatggaggtttaatatgataagggagtctcagattgttattagcttaat Alignment from Exonerate_coding2genome GACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacaGATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAGgtatggaggtttaatatgataagggagtctcagattgttattagcttaat Alignment from GeneWise GACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG cacaaggcaagagccaacctggcagaaacattgtgtgacttgccttacaGATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGACAGACTCGGAAACAGGAGAGAGCTTACATAGgtatggaggtttaatatgataagggagtctcagattgttattagcttaat #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag taaaaagaacatggataatggatagatggttataattatttctttctcagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCaggtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag taaaaagaacatggataatggatagatggttataattatttctttctcagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCaggtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagatCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAggtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagatCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAggtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG tgttaagttcagatgtcctactgatttcgtgcttgcctgtgtgtcccaagATCAGTATCTGGGAAGTACACCAGTGGCCTCTGGGGTTTATCGCCTGCATCAAGGAAAAGgtaagaccattactttctagggatgtctctctgggctgggctcaaatggt #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagggAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagggAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Exonerate_coding2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from GeneWise GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga #### Sfr1_ID10329_3 --> 0 - 0 Original Alignment CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat Alignment from CESAR CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat Alignment from Spaln_aa2Genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat Alignment from Spaln_nt2Genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat Alignment from Pairagon CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat Alignment from Exonerate_protein2genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat Alignment from Exonerate_coding2genome CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat Alignment from GeneWise CCTCTGAGTGGAACACCTAAAGAAAGGTTAAAGAAAGCAAGATCTTCATCTCATTCATTTTGTAGTGTGGTGAAGCGTATGAAGGTAGAGAATGACGAAAATAATGAGACCCTTTCAGAACCAGGAGAATCTTCAAAGGAAGAAAATTGTTCAAAGGCCCAAGAAAGCTTGAAAAACAAAGACAGTGAGCCTGGAGAAAAGAGCTCAGAGGAGAAAAACACGTGTGAATCTAAGTCGTCGGATACTGGGTCATCTAATGCCCTCCCAAAGGAGTCTGAGAATGCGATCATTAGAGAAAAATTAAAACAAGAAAAAATAAGATTGATTAGGCAGGTTGAAGAGAAGGAAGACCTTCTTCGGAGGTTAAAGTTAGTCAAGATGTATAGAATAAAG cctaaattgacttgctacaacatcaccctctattttccttcttgttgcagCCACTGAGTGGGACACCTAAAGAAAGGTTAAAGAAAGCACGATCTTCATCTCATTCACTTTGTAGTGTTGTGAAGCGTATGAAAGTTGAGAATGATGAAAACAATGAAACCCTTGCAGAACCAGGAGAATCTTCCAAGGAAGAAAATTGCTCAAAGGCCCGAGAGAGCTTGAAAAATAAGGATAGTGAGCCTGGAGAAAAGAGTTCAGAAGAGAAAAACACTTGTGAGTCCAAATCATCAGATACACAGTCCTCTAACGCCCTTCCAAAAGAGTCCGAGAATGCAATCATGAGAGAAAAACTAAAGCCTGAAAAAGTAAGGTTGATTAGACAGGTCGAAGACAAAGAAGACCTTCTTCAGAGGTTAAAGTTAGTTAAGATGTATAGAATAAAGgtgagtaggtgttgagtaatctatgttcagatcaatgatcactgtgatat #### Sfxn2_ID9965_3 --> 1 - 2 Original Alignment gACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCag tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccaggACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCaagtatgtaagataggactctctacctctccacacaacccacctgtttgcaa Alignment from CESAR gACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCag tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccaggACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCaagtatgtaagataggactctctacctctccacacaacccacctgtttgcaa Alignment from Spaln_aa2Genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccagGACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCAAgtatgtaagataggactctctacctctccacacaacccacctgtttgcaa Alignment from Spaln_nt2Genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccagGACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCAAgtatgtaagataggactctctacctctccacacaacccacctgtttgcaa Alignment from Pairagon GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccagGACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCAAgtatgtaagataggactctctacctctccacacaacccacctgtttgcaa Alignment from Exonerate_protein2genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccagGACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCAAgtatgtaagataggactctctacctctccacacaacccacctgtttgcaa Alignment from Exonerate_coding2genome GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccagGACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCAAgtatgtaagataggactctctacctctccacacaacccacctgtttgcaa Alignment from GeneWise GACAATGCCTGCAGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCCACGTCTGTCAG tttaaggtttataagggcagtgtgggaccttcctggtctcttatctccagGACAATGCCTGCTGTCATTTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCATTGGTCAACTACACCAACAGGAATGCTGCATCCCCCACATCTGTCAAgtatgtaagataggactctctacctctccacacaacccacctgtttgcaa #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc #### Sfxn3_ID9287_5 --> 0 - 2 Original Alignment CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGag ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGaggtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc Alignment from CESAR CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGag ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGaggtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc Alignment from Spaln_aa2Genome CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGAGgtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc Alignment from Spaln_nt2Genome CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGAGgtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc Alignment from Pairagon CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGAGgtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc Alignment from Exonerate_protein2genome CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGAGgtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc Alignment from Exonerate_coding2genome CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGAGgtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc Alignment from GeneWise CACCTGCCCCCGCTAGTCGGTCGATTCGTGCCCTTTGCAGCTGTGGCCGCTGCCAACTGCATCAACATCCCCCTGATGAGGCAGAG ccatccttctgggcactttgctgctgacgtttcatctgttgattacacagCACCTGCCCCCGCTAGTCGGTCGGTTTGTACCGTATGCATCTGTAGCTGCTGCCAACTGCATAAACATCCCTTTAATGAGGCAGAGgtaagcggcccgagctcctgacccaagttgtcagcttgcccaaataaacc #### Sgms1_ID6685_4 --> 2 - 0 Original Alignment atTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagacTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc Alignment from CESAR atTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagacTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc Alignment from Spaln_aa2Genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagACTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc Alignment from Spaln_nt2Genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagACTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc Alignment from Pairagon ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagACTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc Alignment from Exonerate_protein2genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagACTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc Alignment from Exonerate_coding2genome ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagACTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc Alignment from GeneWise ATTCTCCTCGGCGGCTCTGGTGGTACCACTGGATTTGCTGGCTCCTCAGCGTCGTTGGAATCTTCTGTATTCTCTTAGCGCATGACCACTACACTGTGGACGTGGTGGTGGCCTACTACATCACCACAAGACTCTTCTGGTGGTATCACACGATGGCCAATCAGCAA ttatgacaactgattgagatttggtaattacagtgttttctgctgtgcagACTCTCCTCGACGGCTCTGGTGGTACCACTGGATCTGCTGGCTCCGCAGCGTTGTTGGTATCTTCTGTATACTCTTAGCACATGACCACTACACTGTAGATGTGGTGGTAGCCTACTACACTACCACCAGACCCTTCTGGTGGTATCATGCAATGGCCAACCAGCAAgtgagttattcttcccctgttctcttgattatgcaagtctcaggacactc #### Sh3pxd2a_ID10176_10 --> 2 - 1 Original Alignment tgTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAg agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagtgTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAggtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa Alignment from CESAR tgTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAg agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagtgTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAggtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa Alignment from Spaln_aa2Genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagTGTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAGgtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa Alignment from Spaln_nt2Genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagTGTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAGgtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa Alignment from Pairagon TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagTGTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAGgtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa Alignment from Exonerate_protein2genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagTGTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAGgtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa Alignment from Exonerate_coding2genome TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagTGTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAGgtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa Alignment from GeneWise TGTCCAAGAGACGCAAGGCACACCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGGATGGTCAACAGGCAGCACAGCCGAG agtttatttatagtagcctggaagttgaggttacttcccacgaatttcagTGTCCAAGAGACGCAAGGCGCACCTGCGGCGCCTGGATCGCCGGTGGACCCTAGGCGGAATGGTCAATAGGCAGCACAGCCGAGgtaaggacaggcatgtgtttctccttatgttggcatgtccctcaataaaa #### Sh3pxd2a_ID10192_6 --> 1 - 1 Original Alignment aGACTATGGCAGTTCCAAGAGGAAATCAg aacccagagccacatttagtcttagctgataaaactgtcatttcttttagaGACTATGGTAGCTCAAAGAGGAAGTCAggtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc Alignment from CESAR aGACTATGGCAGTTCCAAGAGGAAATCAg aacccagagccacatttagtcttagctgataaaactgtcatttcttttagaGACTATGGTAGCTCAAAGAGGAAGTCAggtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc Alignment from Spaln_aa2Genome AGACTATGGCAGTTCCAAGAGGAAATCAG aacccagagccacatttagtcttagctgataaaactgtcatttcttttagAGACTATGGTAGCTCAAAGAGGAAGTCAGgtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc Alignment from Spaln_nt2Genome AGACTATGGCAGTTCCAAGAGGAAATCAG aacccagagccacatttagtcttagctgataaaactgtcatttcttttagAGACTATGGTAGCTCAAAGAGGAAGTCAGgtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc Alignment from Pairagon AGACTATGGCAGTTCCAAGAGGAAATCAG aacccagagccacatttagtcttagctgataaaactgtcatttcttttagAGACTATGGTAGCTCAAAGAGGAAGTCAGgtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc Alignment from Exonerate_protein2genome AGACTATGGCAGTTCCAAGAGGAAATCAG aacccagagccacatttagtcttagctgataaaactgtcatttcttttagAGACTATGGTAGCTCAAAGAGGAAGTCAGgtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc Alignment from Exonerate_coding2genome aacccagagccacatttagtcttagctgataaaactgtcatttcttttagagactatggtagctcaaagaggaagtcaggtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc Alignment from GeneWise aacccagagccacatttagtcttagctgataaaactgtcatttcttttagagactatggtagctcaaagaggaagtcaggtaaggaattcctagggaaccttatcactcttacctgtttactggctgcc #### Shoc2_ID11415_2 --> 2 - 1 Original Alignment gtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAg agtattctaattattctttaatgcctactaaattgtttcttttttttcaggcGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAggtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt Alignment from CESAR gtGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAg agtattctaattattctttaatgcctactaaattgtttcttttttttcaggcGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAggtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt Alignment from Spaln_aa2Genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG agtattctaattattctttaatgcctactaaattgtttcttttttttcagGCGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAGgtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt Alignment from Spaln_nt2Genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG agtattctaattattctttaatgcctactaaattgtttcttttttttcagGCGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAGgtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt Alignment from Pairagon GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG agtattctaattattctttaatgcctactaaattgtttcttttttttcagGCGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAGgtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt Alignment from Exonerate_protein2genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG agtattctaattattctttaatgcctactaaattgtttcttttttttcagGCGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAGgtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt Alignment from Exonerate_coding2genome GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG agtattctaattattctttaatgcctactaaattgtttcttttttttcagGCGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAGgtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt Alignment from GeneWise GTGAATTATGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTACTGGACCTCCCAGATACAATAG agtattctaattattctttaatgcctactaaattgtttcttttttttcagGCGAATTAGGTAACCTCATTACCCTGGATGTAGCTCACAATCAACTTGAGCACCTTCCAAAGGAGATTGGAAACTGCACACAGATAACCAACCTTGACTTGCAGCACAATGACCTCCTGGACCTCCCAGATACAATAGgtaagaggggaggatacaaactttctggtacaaattcaggaaaatgcttt #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaagctgtcaagttaacattgaatgccatattatgacctggcccttctg Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaagctgtcaagttaacattgaatgccatattatatgttcaccactacc Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaagctgtcaagttaacattgaatgccatattatgacctggcccttctg Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaagctgtcaagttaacattgaatgccatattatgacctggcccttctg Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaagctgtcaagttaacattgaatgccatattatgacctggcccttctg Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaagctgtcaagttaacattgaatgccatattatgacctggcccttctg Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaagctgtcaagttaacattgaatgccatattatgacctggcccttctg Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- aaaggaaatgctaccgcatgaaggaccatctccccatttggcctgagcagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGATTACACCAGATCTCCTCCTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGGTAAGCTGTCAAGTTAACATTGAATGCCATATTATGACCTGGCCCTTCTG #### Sipa1_ID1144_8 --> 0 - 2 Original Alignment CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAag tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAaggtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta Alignment from CESAR CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAag tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAaggtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta Alignment from Spaln_aa2Genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta Alignment from Spaln_nt2Genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta Alignment from Pairagon CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta Alignment from Exonerate_protein2genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta Alignment from Exonerate_coding2genome CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta Alignment from GeneWise CTGGTGAGCCGCGGGTGTGAGACCAGAGAACTAGCGCTGCCCAGAGATGGCCAAGGTCGCCTGGGCTTCGAGGTGGATGCAGAAGGCTTCATCACGCACGTGGAGCGCTTCACGTTTGCGGAGACCACGGGGCTTCGGCCTGGAGCTCGTTTGCTGCGAGTCTGCGGCCAGACGCTGCCCAAGCTGGGTCCCGAAGCTGCTGCCCAGATGCTGCGCTCTGCGCCCAAGGTCTGCGTCACGGTCCTACCCCCAGACGAGAGCGGCCGGCCGCGAAG tggagagaaggacatatccccagccactattgacacttgcctctctccagTTGGTGAGCTGTGGGTGTGAGACAAGAGAATTGGCATTGCCCAGAGATGGCCAAGGTCACCTGAGCTTTGAGGTGGATGCAGAAGGCTTCATCACACATGTTGAGTGCTTCACATTTGCGGAGACCACAGGGCTCAGGCCTGGAGCATGTTTGCTGAGAGTCTGTGGCCAAACTCTGCCTAAGCTTGGTCCTGAGGCTGCCGCCCAGATGCTGCGCTCAGCACCAAAGATTTGCGTTATGGTTCTCCCTCCAGATGAGACAAGTCGGCCACGAAGgtttggcactggcttggacttctgtgacataaatgttgcaaaaactttta #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgcaagtacttgggtgaacttgtgtcatagggtggggtcaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAGGGTGGCAGTGAG ttgggcacactaaagatcatagattttttgattctcacttcattccaaagCTCCTAAGGAAACGTCACATCAGCAATGATATTGTGACCATTGTGTTCCAGGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGGCAAGTACTTGGgtgaacttgtgtcatagggtggggtcaactatcatcat #### Slc15a3_ID3030_5 --> 0 - 1 Original Alignment ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAggttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta Alignment from CESAR ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAggttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta Alignment from Spaln_aa2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAGgttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta Alignment from Spaln_nt2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTT---GCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAGgttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta Alignment from Pairagon ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGA---TCCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAGgttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta Alignment from Exonerate_protein2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAGgttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta Alignment from Exonerate_coding2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAGgttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta Alignment from GeneWise ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTT---GCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG ggaatgatgtgggcttcctgtgcagcttctgtgtttctgactatttatagATCCCAGAAGCATGGCTTCTATCGGCCAATGTAGTAGCCGTGATCCTGATACTTATTCCTGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGCAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTGGGCATGTTTTTTGGTTTCACCTCCATCATTGTAGCAGgttgaggatataatctgtgcatccaacacgtgtcagggcttcccaactta #### Slc15a3_ID3031_6 --> 2 - 1 Original Alignment gaGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAg ggctccagcagtagttcctgataactgctggggtattgtgtctcttacaggaGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAggtcagttgaatcccctctctggttattatgttgactttatactttgtcaa Alignment from CESAR gaGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAg ggctccagcagtagttcctgataactgctggggtattgtgtctcttacaggaGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAggtcagttgaatcccctctctggttattatgttgactttatactttgtcaa Alignment from Spaln_aa2Genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG ggctccagcagtagttcctgataactgctggggtattgtgtctcttacagGAGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtcagttgaatcccctctctggttattatgttgactttatactttgtcaa Alignment from Spaln_nt2Genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG ggctccagcagtagttcctgataactgctggggtattgtgtctcttacagGAGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtcagttgaatcccctctctggttattatgttgactttatactttgtcaa Alignment from Pairagon GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG ggctccagcagtagttcctgataactgctggggtattgtgtctcttacagGAGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtcagttgaatcccctctctggttattatgttgactttatactttgtcaa Alignment from Exonerate_protein2genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG ggctccagcagtagttcctgataactgctggggtattgtgtctcttacagGAGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtcagttgaatcccctctctggttattatgttgactttatactttgtcaa Alignment from Exonerate_coding2genome GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG ggctccagcagtagttcctgataactgctggggtattgtgtctcttacagGAGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtcagttgaatcccctctctggttattatgttgactttatactttgtcaa Alignment from GeneWise GAGTCCTGGAGAAAGAACGCTTACAGTACATTGCTGCCAACCAGACAGTGCCTCAGCTGATTGGGAAGGACTTATACTATGCAGCGCCACTGTCTATCTGGTGGCAGATCCCCCAGTACCTGCTCATCGGGGTCAGTGAGATCTTTGCCAGCATCCCAG ggctccagcagtagttcctgataactgctggggtattgtgtctcttacagGAGTCCTAGAGAAAGAACACTTGCAATACATTGCTGCAAACCAGACAGTTCCTCAGCTGATTGGGCAGGATTTATACTATGCAGTGCCACTGTCTATTTGGTGGCAGACCCCACAGTACCTACTCATTGGTGTCAGTGAAATCTTTGCCAGCATCCCAGgtcagttgaatcccctctctggttattatgttgactttatactttgtcaa #### Slc16a12_ID6973_5 --> 1 - 1 Original Alignment gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg gaggcacttgctttgcaaagggagggaggaataaccactgctttctataggTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCAGTACCTTACTTAGTGAGCCCACCCATTGCAggtgtgtcatgagtttctactacctgtggttgagatctggaagggaaagta Alignment from CESAR gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg gaggcacttgctttgcaaagggagggaggaataaccactgctttctataggTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCAGTACCTTACTTAGTGAGCCCACCCATTGCAggtgtgtcatgagtttctactacctgtggttgagatctggaagggaaagta Alignment from Spaln_aa2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG gaggcacttgctttgcaaagggagggaggaataaccactgctttctatagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCAGTACCTTACTTAGTGAGCCCACCCATTGCAGgtgtgtcatgagtttctactacctgtggttgagatctggaagggaaagta Alignment from Spaln_nt2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG gaggcacttgctttgcaaagggagggaggaataaccactgctttctatagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCAGTACCTTACTTAGTGAGCCCACCCATTGCAGgtgtgtcatgagtttctactacctgtggttgagatctggaagggaaagta Alignment from Pairagon GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG gaggcacttgctttgcaaagggagggaggaataaccactgctttctatagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCAGTACCTTACTTAGTGAGCCCACCCATTGCAGgtgtgtcatgagtttctactacctgtggttgagatctggaagggaaagta Alignment from Exonerate_protein2genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG gaggcacttgctttgcaaagggagggaggaataaccactgctttctatagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCAGTACCTTACTTAGTGAGCCCACCCATTGCAGgtgtgtcatgagtttctactacctgtggttgagatctggaagggaaagta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG gaggcacttgctttgcaaagggagggaggaataaccactgctttctatagGTGTCTGAAAAATTACCGATACGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACTTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGTGTAGTCTACTTCCTTCATGCAGTACCTTACTTAGTGAGCCCACCCATTGCAGgtgtgtcatgagtttctactacctgtggttgagatctggaagggaaagta #### Slc16a12_ID6976_2 --> 1 - 1 Original Alignment aTGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTg attccattaactatccactcatgtctggtgcttgttaatcttccttctagaTGTATCTCCATATTTTTCGTGGAGTTCCAGACATATTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTggtgtgtaatgcattagattaccttctccaatcaaaataattgataatgac Alignment from CESAR aTGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTg attccattaactatccactcatgtctggtgcttgttaatcttccttctagaTGTATCTCCATATTTTTCGTGGAGTTCCAGACATATTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTggtgtgtaatgcattagattaccttctccaatcaaaataattgataatgac Alignment from Spaln_aa2Genome ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attccattaactatccactcatgtctggtgcttgttaatcttccttctagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATATTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtgtgtaatgcattagattaccttctccaatcaaaataattgataatgac Alignment from Spaln_nt2Genome ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attccattaactatccactcatgtctggtgcttgttaatcttccttctagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATATTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtgtgtaatgcattagattaccttctccaatcaaaataattgataatgac Alignment from Pairagon ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attccattaactatccactcatgtctggtgcttgttaatcttccttctagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATATTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtgtgtaatgcattagattaccttctccaatcaaaataattgataatgac Alignment from Exonerate_protein2genome attccattaactatccactcatgtctggtgcttgttaatcttccttctagatgtatctccatatttttcgtggagttccagacatattttgctcaggattactcccaaacagcatggatccattccattgtagactgtatgacaatgctctgtggtgtgtaatgcattagattaccttctccaatcaaaataattgataatgac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGTATCTCCATATTTTTTGTGGAGTTTCAGACATACTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTG attccattaactatccactcatgtctggtgcttgttaatcttccttctagATGTATCTCCATATTTTTCGTGGAGTTCCAGACATATTTTGCTCAGGATTACTCCCAAACAGCATGGATCCATTCCATTGTAGACTGTATGACAATGCTCTGTGgtgtgtaatgcattagattaccttctccaatcaaaataattgataatgac #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagtgTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTggtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTg cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagtgTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTggtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from Exonerate_coding2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGAATCGGCTCCTCTTGCTCATCTGTGGCTG cacaaagccagacccatgtgaaggaccaatttaattgttcctttttacagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATAGCCAAGTCACTGCAGGGAATTGGTTCATCCTGCTCATCTGTGGCTGgtgagattaaaattcagtgtttgatatatgaaccaaggactcatatgtac #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAggtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAggtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Pairagon GTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcag------------------------------AGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG tgggagTTACAACATGGTTAAGTTTTTCTGCTAATTGTCTCTCCTTTCAGAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga #### Slc1a1_ID6166_5 --> 1 - 0 Original Alignment gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca Alignment from CESAR gAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaaggAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca Alignment from Spaln_aa2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca Alignment from Spaln_nt2Genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca Alignment from Pairagon GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca Alignment from Exonerate_protein2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca Alignment from Exonerate_coding2genome GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca Alignment from GeneWise GAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAG gggtcttagtaacccaaggcatgcttcctatgtgtgtatgtgatataaagGAACATGTTCCCTGAGAATCTGGTCCAAGCCTGTTTTCAGCAGgtatcccaaaagcttgttttaagctggcccatcataacacacagtaccca #### Slc1a1_ID6168_6 --> 0 - 0 Original Alignment TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCC---------ATGTCTCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt Alignment from CESAR TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCC---------ATGTCTCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt Alignment from Spaln_aa2Genome TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCC---------ATGTCTCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt Alignment from Spaln_nt2Genome TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAA ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCCATGTC-TCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt Alignment from Pairagon TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCC---------ATGTCTCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt Alignment from Exonerate_protein2genome TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACA ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCCATGTCTCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt Alignment from Exonerate_coding2genome TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACA ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCCATGTCTCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt Alignment from GeneWise TACAAAACCAAGCGGGAAGAGGTGAAGCCTGTGGGCGATCCTGGGGGGAACGCAACGGAGGTGTCTGTCACCACAGCCATGACAACAATGTCTGAG ctctcacaagttttttcttaattccacaaccaaagttcttctgtttttagTACAAAACCAAGTGGGAACAGGTCAAGCCTGTCGGTGATCCTGGGGGGAATGCTACAGAAGTCCCTGTCACTACAGCCATG---------TCTCAGgtaagaggcaccaatgccacacatgcttgtgcagcatggataagtccagt #### Slc22a12_ID1793_4 --> 2 - 2 Original Alignment tgATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCAtg tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagtgATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCAtggtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct Alignment from CESAR tgATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCAtg tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagtgATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCAtggtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct Alignment from Spaln_aa2Genome TGATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCATG tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagTGATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCATGgtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct Alignment from Spaln_nt2Genome TGATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCATG tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagTGATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCATGgtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct Alignment from Pairagon TGATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCATG tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagTGATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCATGgtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct Alignment from Exonerate_protein2genome TGATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCATG tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagTGATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCATGgtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct Alignment from Exonerate_coding2genome TGATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCATG tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagTGATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCATGgtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct Alignment from GeneWise TGATGGAGTGGACATCAGCCCAGGGTAGCCCTTTGGTGATGACCTTGAACGCCTTGGGCTTCAGCTTTGGGCAGGTCCTGACAGGTTCTGTGGCCTATGGTGTGCGCAGCTGGAGGATGCTACAGCTGGCTGTCTCTGCCCCCTTCTTCCTCTTCTTTGTTTATTCATG tagtgcgacgttgtaaaggctactgcaagtgttcctggcaccatgtgcagTGATGGAATGGACACTGACACAAGGTAGCCCTTTGGTGATGATTCTGAATGCCTTGGGATTTAGCTTTGGGCAAGTCCTGACAGGATCTGTGGCCCATGGTGTGCGAAGCTGGAGTATGCTGCAGCTGACTGTGTCTGTCCCCTTCTTCCTATTTTTTGTTTACTCATGgtaggagctgtggtaaccctccactcatgtgtagtgatagttaacttcct #### Slc22a12_ID1795_2 --> 0 - 2 Original Alignment TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATag tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATcggtgaggattctccattgggcctggcagttttggctccactggttgatgta Alignment from CESAR TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATag tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATcggtgaggattctccattgggcctggcagttttggctccactggttgatgta Alignment from Spaln_aa2Genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATCGgtgaggattctccattgggcctggcagttttggctccactggttgatgta Alignment from Spaln_nt2Genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATCGgtgaggattctccattgggcctggcagttttggctccactggttgatgta Alignment from Pairagon TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATCGgtgaggattctccattgggcctggcagttttggctccactggttgatgta Alignment from Exonerate_protein2genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATCGgtgaggattctccattgggcctggcagttttggctccactggttgatgta Alignment from Exonerate_coding2genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATCGgtgaggattctccattgggcctggcagttttggctccactggttgatgta Alignment from GeneWise TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggaggacaacttttcttgttttgttttgttttcttagTGGGATCTAGTGCATAACTCCCAGGCCCTAAGGCCAATGGCCCAGTCCATCTTGCTGGCTGGAATTCTGGTAGGTGCTGCGGTTTGTGGCCATGCCTCAGATCGgtgaggattctccattgggcctggcagttttggctccactggttgatgta #### Slc22a19_ID2211_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACaagtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc Alignment from CESAR TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACaagtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACAAgtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACAAgtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc Alignment from Pairagon TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACAAgtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACAAgtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACAAgtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc Alignment from GeneWise TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttgtcacatccggtatgtttttctcaccatttttttttcagTGGGATCTGGTGTGTGGATCCCAGCCACTTAATTCAGTGGCTAAATTCATATATATGACCGGTATTTTCATAGGATATATCATGAGTGGCCACCTATTGGACAAgtaaagacctgtatcttacaattgctctacatatctgagtttcttcatcc #### Slc22a20_ID1345_8 --> 2 - 2 Original Alignment atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcaggtCTGCAGACGTTGCGGACTGTCCCAGCTGAACTAGGCAAGGGCTGTCTGGCAAGCTCGTTCATCTGTGTATACCTTTTCATGGGAGGACTGTATCCA------ATCaggtgtctatgagaggatgccctcattgctgaggttctatttatgttagcac Alignment from CESAR atCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCag tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcaggtCTGCAGACGTTGCGGACTGTCCCAGCTGAACTAGGCAAGGGCTGTCTGGCAAGCTCGTTCATCTGTGTATACCTTTTCATGGGAGGACTGTATCCA------ATCaggtgtctatgagaggatgccctcattgctgaggttctatttatgttagcac Alignment from Spaln_aa2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcagGTCTGCAGACGTTGCGGACTGTCCCAGCTGAACTAGGCAAGGGCTGTCTGGCAAGCTCGTTCATCTGTGTATACCTTTTCATGGGAGGACTGTATCCA------ATCAGgtgtctatgagaggatgccctcattgctgaggttctatttatgttagcac Alignment from Spaln_nt2Genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcagGTCTGCAGACGTTGCGGACTGTCCCAGCTGAACTAGGCAAGGGCTGTCTGGCAAGCTCGTTCATCTGTGTATACCTTTTCATGGGAGGACTGTATCC------AATCAGgtgtctatgagaggatgccctcattgctgaggttctatttatgttagcac Alignment from Pairagon ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcagGTCTGCAGACGTTGCGGACTGTCCCAGCTGAACTAGGCAAGGGCTGTCTGGCAAGCTCGTTCATCTGTGTATACCTTTTCATGGGAGGACTGTATCC------AATCAGgtgtctatgagaggatgccctcattgctgaggttctatttatgttagcac Alignment from Exonerate_protein2genome ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcagGTCTGCAGACGTTGCGGACTGTCCCAGCTGAACTAGGCAAGGGCTGTCTGGCAAGCTCGTTCATCTGTGTATACCTTTTCATGGGAGGACTGTATCCAATCAGGTGTCTatgagaggatgccctcattgctgaggttctatttatgttagcac Alignment from Exonerate_coding2genome tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcaggtctgcagacgttgcggactgtcccagctgaactaggcaagggctgtctggcaagctcgttcatctgtgtataccttttcatgggaggactgtatccaatcaggtgtctatgagaggatgccctcattgctgaggttctatttatgttagcac Alignment from GeneWise ATCTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGTATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAG tagccagtgcttgcatgtccagcttggaatggctctcttgttccccgcagGTCTGCAGACGTTGCGGACTGTCCCAGCTGAACTAGGCAAGGGCTGTCTGGCAAGCTCGTTCATCTGTGTATACCTTTTCATGGGAGGACTGTATCCA------ATCAGgtgtctatgagaggatgccctcattgctgaggttctatttatgttagcac #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCaggtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCaggtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagtgcttgcaatttcacctgctaaatatactttccctcccttaccagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCGATGAGCTCTCATCATTTCGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACCAGgtgcgtacctttgattatcctcaccatttttaaatagaccacagggatga #### Slc22a26_ID2222_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagaTTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGagtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca Alignment from CESAR gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagaTTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGagtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagATTTG---GCAAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca Alignment from Pairagon GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagATTTG---GCAAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca Alignment from GeneWise GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacagatgacctgtttccctgtcttgtctttccaccaccccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGCACCGACCTTCTTTATCTACTGCTTACTACGCTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGTGTCTTGTTGAgtatgtcaaaacttccacagttcaaaactcccacagtgcttgcaatttca #### Slc22a26_ID2223_2 --> 0 - 2 Original Alignment TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACaa ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACaagtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc Alignment from CESAR TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACaa ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACaagtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc Alignment from Spaln_aa2Genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACAAgtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc Alignment from Spaln_nt2Genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACAAgtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc Alignment from Pairagon TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACAAgtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc Alignment from Exonerate_protein2genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACAAgtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc Alignment from Exonerate_coding2genome TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACAAgtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc Alignment from GeneWise TGGAACCTGGTGTGTGGATCTCAGGAGCTGAATTCAGTGGCTAAATTTATATTCTTAATTGGCGTGTTGGCAGGACATTTTGTAGGTGGACATTTATCAGACAA ttatgggttgttgggtgctctgaatagattgtttttaaaaatatttctagTGGAATCTGCTCTGTGGTTCTCAGGAGTTGAATTCAGTGGCTAAGTTTATCTTCTTACTTGGTGAGCTGGCAGGACATTTTGTTGGGGGCCGTCTGCCAGACAAgtctgcagattattcttactgtttaggtgtgaatgcatccaacagcttcc #### Slc22a27_ID2229_9 --> 1 - 2 Original Alignment gGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATga ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccaggGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATgagtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag Alignment from CESAR gGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATga ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccaggGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATgagtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag Alignment from Spaln_aa2Genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag Alignment from Spaln_nt2Genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag Alignment from Pairagon GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag Alignment from Exonerate_protein2genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag Alignment from Exonerate_coding2genome GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag Alignment from GeneWise GGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGA ccatgtttcaagtgtgcagcctaaccagtaacgccctctgcttcccccagGGCAACAGCTGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACATACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCATTTACTGTGTTTCTTCTTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGAgtaagtaaagtgcaaaccccttaggtgagttctttggtatttctgatcag #### Slc22a27_ID2233_5 --> 1 - 0 Original Alignment gTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagaTGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag Alignment from CESAR gTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagaTGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag Alignment from Spaln_aa2Genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagATGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag Alignment from Spaln_nt2Genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagATGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag Alignment from Pairagon GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagATGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag Alignment from Exonerate_protein2genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagATGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag Alignment from Exonerate_coding2genome GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagATGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag Alignment from GeneWise GTGGCTGTCAGAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAG acaaaggtgaaatttgtgtagcatatccccttctctgcctcacgttccagATGGCTATCAGAATCGGCTCGATGGTTGATTCTGCCCAACAAACCTCAAAAGGGCTTAAAGGAACTGAGAATAGTTGCACACATGAATGGAATGAAGAATTCTGGAGACCTAACTATGGAGgtgaggatagagggaaggcttatgcctttaaggaaattatgggcctggag #### Slc22a27_ID2234_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAag attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagtgTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACAcggtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga Alignment from CESAR tgTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAag attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagtgTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACAcggtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAAG attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagTGTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACACGgtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAAG attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagTGTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACACGgtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAAG attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagTGTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACACGgtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAAG attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagTGTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACACGgtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAAG attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagTGTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACACGgtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGGCAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAAG attgctgttgaacagctaacagtttgtcatttgttttgttttcctttaagTGTTAGAATGGACAGGCCCT---------------ATGTCTGCACTTTTATCTTGTGGTCCTAACATTGGATACATGATATTGGCAGGGTTGGCCTTTCTTTTTAGAATTCGGCACCACTTGCAGCTAACAATGTCTGTACCAATATGTTTCTTCCTGATACTTACACGgtaatggcttcccctccccaatgtggtctctctgtcatcaatgaagagga #### Slc22a27_ID2236_2 --> 0 - 2 Original Alignment TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACag gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACaggtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat Alignment from CESAR TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACag gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACaggtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat Alignment from Spaln_aa2Genome TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACAGgtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat Alignment from Spaln_nt2Genome TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACAGgtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat Alignment from Pairagon TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACAGgtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat Alignment from Exonerate_protein2genome TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACAGgtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat Alignment from Exonerate_coding2genome TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACAGgtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat Alignment from GeneWise TGGGACTTGGTATGTGAATCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTGGCCATCTGTCAGACAG gccttgttcactgattggttgttgtgttttcccttccaaacaaatttcagTGGGACTTGGTATGTGAATCCCAAGCACTAAAGTCTGTCACTAAATTTTCTTTCATGATTGGCCTATTCATAGGTGGTATCATATGTGGATATCTATCTGACAGgtatgcgtgactaaaatgcccttttaaaatgcacttttcccaacattaat #### Slc22a28_ID2247_4 --> 2 - 2 Original Alignment ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagtaTTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTG---GTTCTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGaggtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac Alignment from CESAR ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagtaTTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGaggtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac Alignment from Spaln_aa2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagTATTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGAGgtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac Alignment from Spaln_nt2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagTATTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTGG---TTCTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGAGgtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac Alignment from Pairagon TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagTATTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTGG---TTCTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGAGgtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac Alignment from Exonerate_protein2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagTATTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGAGgtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac Alignment from Exonerate_coding2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagTATTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGAGgtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac Alignment from GeneWise TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttttcctgtcaaatcccatctagtaatcaatttgtctttcttaagTATTGGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTTGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATCTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTCTGACGAGgtaagttgaacaggttccaagatgtaggaggtgctatctctttaatctac #### Slc22a29_ID2257_6 --> 0 - 2 Original Alignment ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAag ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAaggtgagtttacaattgtgtataaagatcatatagggtagattttctctttt Alignment from CESAR ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAag ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAaggtgagtttacaattgtgtataaagatcatatagggtagattttctctttt Alignment from Spaln_aa2Genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAAGgtgagtttacaattgtgtataaagatcatatagggtagattttctctttt Alignment from Spaln_nt2Genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAAGgtgagtttacaattgtgtataaagatcatatagggtagattttctctttt Alignment from Pairagon ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAAGgtgagtttacaattgtgtataaagatcatatagggtagattttctctttt Alignment from Exonerate_protein2genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAAGgtgagtttacaattgtgtataaagatcatatagggtagattttctctttt Alignment from Exonerate_coding2genome ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAAGgtgagtttacaattgtgtataaagatcatatagggtagattttctctttt Alignment from GeneWise ATTGTGAGAACAAGTATGAAGGCAGAACTTGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCCATCCTACGTAAGCGGATATGTGTCCTGTCCTTTATAAG ccatttgattaccctgacactgaatacacaattctttcatttcttcctagATTGTGAGGACAAGTATGAAGGCAGAACTTGAAGCGGCAAAAACAGAACCTTCTCTAAGAGATTTGTTGCATACATCCATCCTATGTAAATGGCTATGTGTCCTGTCCTTTATAAGgtgagtttacaattgtgtataaagatcatatagggtagattttctctttt #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTG---TTCGGCGCCATGATGTTTGGTTACCTTGCAGATaggtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTC---GGCGCCATGATGTTTGGTTACCTTGCAGATaggtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTG---TTCGGCGCCATGATGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTGT---TCGGCGCCATGATGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTC---GGCGCCATGATGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTG---TTCGGCGCCATGATGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTG---TTCGGCGCCATGATGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG gccactaaaattgacaaatttctgttcgatcagttttcctgtcacggcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCAGTCACTGTTCATGGTGGGAGTGTTC---GGCGCCATGATGTTTGGTTACCTTGCAGATAGgtcaactatgagtactgaaagtgctcatttgcagtaacagtaagattagg #### Slc22a6_ID2283_4 --> 2 - 2 Original Alignment acATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTtg cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagacATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTtggtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata Alignment from CESAR acATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTtg cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagacATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTtggtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata Alignment from Spaln_aa2Genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagACATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTTGgtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata Alignment from Spaln_nt2Genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagACATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTTGgtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata Alignment from Pairagon ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagACATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTTGgtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata Alignment from Exonerate_protein2genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagACATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTTGgtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata Alignment from Exonerate_coding2genome ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagACATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTTGgtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata Alignment from GeneWise ACATGGAGTGGATGCCTATTCACACCCGTGCCTATGTGGGCACCTTGATTGGCTATGTCTACAGCTTGGGCCAGTTCCTCCTGGCTGGTATCGCCTATGCTGTGCCCCACTGGCGCCACCTGCAGCTTGCGGTCTCTGTGCCTTTTTTCGTTGCCTTCATCTACTCTTG cccatcatgcagcctaacaactcccacattgttttctttaacctgccaagACATGGAGTGGACACCCATTCACACCCGCGCCTATGTCTGCACATTGATTGGCTATGTCTACAGTTTGGGCCAGTACCTCCTGGCTGGTATTGCTTATGCCGTGACCCACTGGCGGCACCTACAAATTGCTGTCTCTGTTCCTTTTTTCGTTGCTTTCATCTACTCTTGgtaaagtggatccaaagtgcaagaggatgctaaaagattaaactaatata #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacaggTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacaggTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc #### Slc22a8_ID2276_9 --> 1 - 2 Original Alignment gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtctgcactggactgtctcatgtggctctctcactttaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACtggtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from CESAR gCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACtg ttttaagagttgtctgcactggactgtctcatgtggctctctcactttaggCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACtggtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Spaln_aa2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATGCTA---CTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Spaln_nt2Genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Pairagon GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Exonerate_protein2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from Exonerate_coding2genome GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc Alignment from GeneWise GCAAACAGGTATGGGTATCAGTAACATATGGGCTCGAGTGGGAAGTATGATAGCCCCACTGGTGAAAATCACGGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGGACCATGACTCTACTGGGAGGCAGTGCTGCCTTCTTTCTGCTTGAGACCCTCAATCGGCCCTTACCAGAAACTATCGAGGACATACAAGACTG ttttaagagttgtctgcactggactgtctcatgtggctctctcactttagGCAAACAGGCATGGGCATCAGTAACATATGGGCTCGGGTTGGAAGTATGATAGCCCCCCTGGTTAAAGTCACAGGAGAACTGCAGCCCTTCATCCCTAATGTCATCTTTGGAACCATG---CTACTAGGAGGCAGTGCTGCATTTTTTCTACTTGAGACCCTAAATCGATCTCTACCAGAAACCATCAAGGACATACAAGACTGgtacggccttcacctttgtcacacatggttatgcaaacaggccagggtgc #### Slc25a28_ID8783_2 --> 0 - 1 Original Alignment ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATg ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATggtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat Alignment from CESAR ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATg ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATggtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat Alignment from Spaln_aa2Genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat Alignment from Spaln_nt2Genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat Alignment from Pairagon ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat Alignment from Exonerate_protein2genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat Alignment from Exonerate_coding2genome ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat Alignment from GeneWise ACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGCTCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCCAATG ctaggaattaaattaagtcaccaccttacacccacatcttccttcccaagACCCGGATGCAGAGCCTACAGCTTGACCCAGCCGCCCGCTATCGTAATGTACTGGAGGCTCTGTGGAGAATCATGAGGACCGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAATGTCACAGCAACAGGCGCAGCACCTGCCCATGCCCTCTACTTTGCCTGCTACAAAAAGTTAAAAAAGACATTGAGTGACGTAATCCACCCAGGGGGCAATAGCCATATTGCTAATGgtatgtttcccttcctcagtgctcacttttgaatgtgttctgctgtcaat #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcaggtGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcaggtGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gtacgaaggagcagcattgggagacttgattttctctgtaaaactttcagGTGGTGTGGATGCCCAGACCTCTGCTCTGGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgctatgcaccattttaacatcaaa #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCTT---GAAGACaggtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from CESAR AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCTT---GAAGACaggtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCT---TGAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Pairagon AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCT---TGAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from Exonerate_coding2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag Alignment from GeneWise AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattcccctcaacttttcttctagAATGCACCTTTGTACTTAGCAGAATGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtaagtacgcagcagtccattctagcaactccttatgagcactctgtgag #### Slit1_ID8215_24 --> 1 - 2 Original Alignment gATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGct aggaatggtctttgaaccctgcatattatgaagtctttttattattttaggATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTGCACCTGctgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga Alignment from CESAR gATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGct aggaatggtctttgaaccctgcatattatgaagtctttttattattttaggATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTGCACCTGctgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga Alignment from Spaln_aa2Genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT aggaatggtctttgaaccctgcatattatgaagtctttttattattttagGATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTGCACCTGCTgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga Alignment from Spaln_nt2Genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT aggaatggtctttgaaccctgcatattatgaagtctttttattattttagGATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCT---CTTTCAAGGGCTACGTTCACTGCACCTGCTgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga Alignment from Pairagon GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT aggaatggtctttgaaccctgcatattatgaagtctttttattattttagGATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCT---CTTTCAAGGGCTACGTTCACTGCACCTGCTgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga Alignment from Exonerate_protein2genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT aggaatggtctttgaaccctgcatattatgaagtctttttattattttagGATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTGCACCTGCTgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga Alignment from Exonerate_coding2genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT aggaatggtctttgaaccctgcatattatgaagtctttttattattttagGATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTGCACCTGCTgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga Alignment from GeneWise GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT aggaatggtctttgaaccctgcatattatgaagtctttttattattttagGATCCTCAGCCACAATGCCCTCCAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTGCACCTGCTgtgagggtatctctgctcattcttcttggaggttggattatgttaagtga #### Slit1_ID8225_14 --> 1 - 1 Original Alignment gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg tgacaggacacccagactgaatttgtgattacttatgccttttcttccaggCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtgagatgcatctgcctatccctgagggatatggaatacataattaacat Alignment from CESAR gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg tgacaggacacccagactgaatttgtgattacttatgccttttcttccaggCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtgagatgcatctgcctatccctgagggatatggaatacataattaacat Alignment from Spaln_aa2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG tgacaggacacccagactgaatttgtgattacttatgccttttcttccagGCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgagatgcatctgcctatccctgagggatatggaatacataattaacat Alignment from Spaln_nt2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG tgacaggacacccagactgaatttgtgattacttatgccttttcttccagGCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgagatgcatctgcctatccctgagggatatggaatacataattaacat Alignment from Pairagon GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG tgacaggacacccagactgaatttgtgattacttatgccttttcttccagGCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgagatgcatctgcctatccctgagggatatggaatacataattaacat Alignment from Exonerate_protein2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG tgacaggacacccagactgaatttgtgattacttatgccttttcttccagGCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgagatgcatctgcctatccctgagggatatggaatacataattaacat Alignment from Exonerate_coding2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG tgacaggacacccagactgaatttgtgattacttatgccttttcttccagGCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgagatgcatctgcctatccctgagggatatggaatacataattaacat Alignment from GeneWise GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG tgacaggacacccagactgaatttgtgattacttatgccttttcttccagGCATTTAGCGCAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCGCGATGTGACAGCCCCTGGCGCCTCTCAAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtgagatgcatctgcctatccctgagggatatggaatacataattaacat #### Slit1_ID8228_11 --> 1 - 2 Original Alignment aGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCct ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagaTACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCctgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca Alignment from CESAR aGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCct ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagaTACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCctgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca Alignment from Spaln_aa2Genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagATACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCCTgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca Alignment from Spaln_nt2Genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagATACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCCTgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca Alignment from Pairagon AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagATACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCCTgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca Alignment from Exonerate_protein2genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagATACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCCTgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca Alignment from Exonerate_coding2genome AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagATACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCCTgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca Alignment from GeneWise AGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTTGAATTCCCT ttggttgttgcccttccaagctattaaggtgattagaaattgtcttctagATACCTGAGCAACAACCAGATTGCAGAGATTGCACCTGACACCTTCCAGGGCCTGCGTTCACTGAATTCCCTgtaagtcatatgcccaagtatgaccaatcttatggtaactcaggcttaca #### Slit1_ID8231_8 --> 1 - 1 Original Alignment cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg caagatcctttccgtgagccccaagaattttttttttttttacctttcagcCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAggtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt Alignment from CESAR cCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAg caagatcctttccgtgagccccaagaattttttttttttttacctttcagcCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAggtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt Alignment from Spaln_aa2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttccgtgagccccaagaattttttttttttttacctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAGgtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt Alignment from Spaln_nt2Genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttccgtgagccccaagaattttttttttttttacctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAGgtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt Alignment from Pairagon CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttccgtgagccccaagaattttttttttttttacctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAGgtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt Alignment from Exonerate_protein2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttccgtgagccccaagaattttttttttttttacctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAGgtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt Alignment from Exonerate_coding2genome CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttccgtgagccccaagaattttttttttttttacctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAGgtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt Alignment from GeneWise CCGGCTGCACTCCAACCACCTGTTCTGTGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGCTCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAG caagatcctttccgtgagccccaagaattttttttttttttacctttcagCCGGCTGCACACCAACCAACTGTCCTGTGACTGTCATCTAGCCTGGCTCTCTCAATGGCTGAGACAGAGGCCTACCATTGGCCTCTTCACCCAGTGCTCGGGGCCTGTCAGCCTTCGGGGCCTCAATGTGACAGAAGTGCAGAAGGGTGAGTTTAGCTGCTCAGgtaagtgcttgtctcatctggcttcccctactaagtttttcttttcgggt #### Slit1_ID8233_6 --> 1 - 2 Original Alignment aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagaCAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTctgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg Alignment from CESAR aCAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTct gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagaCAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTctgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg Alignment from Spaln_aa2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagACAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg Alignment from Spaln_nt2Genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagACAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg Alignment from Pairagon ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagACAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg Alignment from Exonerate_protein2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagACAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg Alignment from Exonerate_coding2genome ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagACAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg Alignment from GeneWise ACAGCTGGACAAGAACCGGATCAGCTGCATCGAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCT gtctgagactcttctttaggtaaatttcttgttctttatctccattgcagACAGCTGGACAAGAACCGGATTAGCTGCATCAAGGAAGGGGCCTTCCGTGCCCTACGCGGGTTGGAGGTTCTgtacgtggagtctaatgagggttaagttggggagtcaatactgttcaatg #### Slit1_ID8234_5 --> 1 - 2 Original Alignment gGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATct cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcaggGACCTGAGCGAGAATTTTCTTCAG------CCC---AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATctgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat Alignment from CESAR gGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATct cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcaggGACCTGAGCGAGAATTTTCTTCAGCCC---------AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATctgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat Alignment from Spaln_aa2Genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcagGGACCTGAGCGAGAATTTTCTTCAGCCC---------AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATCTgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat Alignment from Spaln_nt2Genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcagGGACCTGAGCGAGAATTTTCTTCA------GCCC---AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATCTgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat Alignment from Pairagon GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcagGGACCTGAGCGAGAATTTTCTTCAGCCC---------AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATCTgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat Alignment from Exonerate_protein2genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcagGGACCTGAGCGAGAATTTTCTTCAGCCC---------AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATCTgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat Alignment from Exonerate_coding2genome GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcagGGACCTGAGCGAGAATTTTCTTCAGCCC---------AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATCTgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat Alignment from GeneWise GGACCTGAGTGAGAATTTTCTCCAGGCTGTGCCCAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCT cgtccgtcaagcccaattaaaaatgcccttccaaattcttgtttttgcagGGACCTGAGCGAGAATTTTCTTCAGCCC---------AAGGCTTTTCGTGGGGCGACAGACCTCAAAAATCTgtaagcagggagttgcaatgattgcactgggacaccctgtctataccaat #### Slit1_ID8250_3 --> 1 - 2 Original Alignment gCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCct tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagaCAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCctgtaagagggggttacataacaggggggttggcacacttatgccatcatgg Alignment from CESAR gCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCct tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagaCAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCctgtaagagggggttacataacaggggggttggcacacttatgccatcatgg Alignment from Spaln_aa2Genome GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaagagggggttacataacaggggggttggcacacttatgccatcatgg Alignment from Spaln_nt2Genome GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaagagggggttacataacaggggggttggcacacttatgccatcatgg Alignment from Pairagon GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaagagggggttacataacaggggggttggcacacttatgccatcatgg Alignment from Exonerate_protein2genome GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaagagggggttacataacaggggggttggcacacttatgccatcatgg Alignment from Exonerate_coding2genome GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaagagggggttacataacaggggggttggcacacttatgccatcatgg Alignment from GeneWise GCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGCGGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCT tccactagcccaatcagcaagtgtagctgacccctgtgtttcttctgcagACAGCTGATGGAGAACCAGATTGGGGCTGTGGAACGCGGAGCTTTTGATGATATGAAGGAGCTAGAGCGCCTgtaagagggggttacataacaggggggttggcacacttatgccatcatgg #### Slit1_ID8251_2 --> 1 - 2 Original Alignment gGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGtt atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctaggGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGttgtgagagcagagctaagcaactattgactgcctccacccttagcttggct Alignment from CESAR gGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGtt atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctaggGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGttgtgagagcagagctaagcaactattgactgcctccacccttagcttggct Alignment from Spaln_aa2Genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtgagagcagagctaagcaactattgactgcctccacccttagcttggct Alignment from Spaln_nt2Genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtgagagcagagctaagcaactattgactgcctccacccttagcttggct Alignment from Pairagon GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtgagagcagagctaagcaactattgactgcctccacccttagcttggct Alignment from Exonerate_protein2genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtgagagcagagctaagcaactattgactgcctccacccttagcttggct Alignment from Exonerate_coding2genome GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtgagagcagagctaagcaactattgactgcctccacccttagcttggct Alignment from GeneWise GGAACTCAACGGCAACAACATCACTCGGATCCACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTT atgattgccagctgcccaaatcaatgtcctgtgtccttctgtgtccctagGGAACTCAACAGCAACAACATCACTCGGATACACAAGAATGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTgtgagagcagagctaagcaactattgactgcctccacccttagcttggct #### Slk_ID10249_5 --> 2 - 2 Original Alignment cgGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATtg tcatttaagactaatacgattgaacttacttgggttgggacttcacatagcaGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATtggtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat Alignment from CESAR cgGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATtg tcatttaagactaatacgattgaacttacttgggttgggacttcacatagcaGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATtggtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat Alignment from Spaln_aa2Genome CGGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATTG tcatttaagactaatacgattgaacttacttgggttgggacttcacatagCAGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATTGgtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat Alignment from Spaln_nt2Genome CGGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATTG tcatttaagactaatacgattgaacttacttgggttgggacttcacatagCAGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATTGgtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat Alignment from Pairagon CGGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATTG tcatttaagactaatacgattgaacttacttgggttgggacttcacatagCAGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATTGgtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat Alignment from Exonerate_protein2genome CGGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATTG tcatttaagactaatacgattgaacttacttgggttgggacttcacatagCAGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATTGgtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat Alignment from Exonerate_coding2genome CGGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATTG tcatttaagactaatacgattgaacttacttgggttgggacttcacatagCAGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATTGgtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat Alignment from GeneWise CGGATTTTGGAGTATCAGCTAAAAATACCAGGACAATTCAAAGGAGGGATTCATTTATTGGCACACCATATTG tcatttaagactaatacgattgaacttacttgggttgggacttcacatagCAGATTTTGGAGTATCATCTAAAAATACAAGGACTATAGAGAGGAGAGATTCGTTTATTGGCACATCATATTGgtgaggatttaccattagttgtgtgtacgccttactttgtagatatatat #### Slk_ID10252_8 --> 0 - 0 Original Alignment CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg Alignment from CESAR CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg Alignment from Spaln_aa2Genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg Alignment from Spaln_nt2Genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg Alignment from Pairagon CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg Alignment from Exonerate_protein2genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg Alignment from Exonerate_coding2genome CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg Alignment from GeneWise CATCCCTTTGTTACCGTTGATTCCAACAAACCAGTCCGAGAGTTGATTGCTGAGGCAAAGGCTGAAGTAACAGAAGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTG ttgtataagcatctcagtctctgtgtaggctgctcacgtttctgttgcagCATCCCTTAGTTACTATTGATTCCAACAAGCCAGTCCGAGAGTTGATTGCGGAGGCAGAGGCCGAAGTCACTGAGGAAGTTGAAGATGGCAAGGAAGAAGATGAGGAGGAGGAAGCAGAGAATGCTCTGgtaagtaccactaaatatcattaggacacagggggtccatgagtcctggg #### Slk_ID10255_11 --> 1 - 0 Original Alignment gCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcaggCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc Alignment from CESAR gCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcaggCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc Alignment from Spaln_aa2Genome GCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcagGCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc Alignment from Spaln_nt2Genome GCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcagGCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc Alignment from Pairagon GCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcagGCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc Alignment from Exonerate_protein2genome GCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcagGCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc Alignment from Exonerate_coding2genome GCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcagGCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc Alignment from GeneWise GCGTCAGGAACTTCGGGAGCTGAGGCTTCTTCAGAAGGAGGAGCAGCGAGCCCAGCAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCGCTTTGAGCAGGAGATGCTG ttatcagttgaaccatttctcttatttgggaagctgtgttttcctttcagGCATCAGGAACTTCGGGAGCTGAGGCTCCTGCAGAAGGAGGAGCAGCGAGCCCAACAGCAGCTCAATGGGAAACTGCAGCAGCAGCGGGAGCAGATCTTCAGGCACTTTGAGCAGGAGATGCAGgtaagagcttggcatctgtagccagggcatcagcaaatgagatgtggagc #### Smarca2_ID5724_8 --> 0 - 0 Original Alignment GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt Alignment from CESAR GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt Alignment from Spaln_aa2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt Alignment from Spaln_nt2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt Alignment from Pairagon GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt Alignment from Exonerate_protein2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt Alignment from Exonerate_coding2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt Alignment from GeneWise GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG tgaaggtataagtattagtagcatactgtaaaatgactcttctgttttagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAGgtaaggttcaaggaagaacctgtacctatgtcccccacacctcacctttt #### Smarca2_ID5728_10 --> 0 - 2 Original Alignment CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAgggtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt Alignment from CESAR CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAgggtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt Alignment from Spaln_aa2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAGGgtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt Alignment from Spaln_nt2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAGGgtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt Alignment from Pairagon CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAGGgtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt Alignment from Exonerate_protein2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAGGgtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt Alignment from Exonerate_coding2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAGGgtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt Alignment from GeneWise CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttggatattgcccccttcttcactttcacactgacccgcccctctcccagCCCATAGATGAGAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGATACTTGGTTGGAAATGAATCCAGGgtatgttgttgaaattttggtgttggacttgtcagaggttgggtcagagt #### Smarca2_ID5730_12 --> 0 - 2 Original Alignment GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTgagtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa Alignment from CESAR GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTga tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTgagtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa Alignment from Spaln_aa2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa Alignment from Spaln_nt2Genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa Alignment from Pairagon GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa Alignment from Exonerate_protein2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa Alignment from Exonerate_coding2genome GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa Alignment from GeneWise GATGAAGAAGAAGAGTCCAGTAGGCAGGAAACCGAGGAGAAGATACTGCTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATCATTGA tgcctcgagatacatgcctgatatcatcagatacctttcatccactgtagGATGAAGAAGAAAAGTCCAGTAGGCAGGAAACTGAGGAGAAGATACTACTGGATCCCAACAGTGAAGAAGTTTCCGAAAAGGATGCCAAGCAGATTATTGAgtacagaggctttccatggctttccttaacaagtgtatttaagctatcaa #### Smarca2_ID5734_15 --> 1 - 0 Original Alignment gACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacaggAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg Alignment from CESAR gACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacaggAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg Alignment from Spaln_aa2Genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacagGAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg Alignment from Spaln_nt2Genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacagGAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg Alignment from Pairagon GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacagGAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg Alignment from Exonerate_protein2genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacagGAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg Alignment from Exonerate_coding2genome GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacagGAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg Alignment from GeneWise GACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCTTACAAG atgtccgtttgctggttttttaatattacctcactcttctctcttgacagGAGCCTGTTTAACTGGACATATGAATTTGACAGATGGGCACCTTCTGTGGTGAAAATTGCTTACAAGgtatgtacgtatactcctggataacaagcacaagctcccttttgcatatg #### Smarca2_ID5735_16 --> 0 - 0 Original Alignment GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag Alignment from CESAR GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag Alignment from Spaln_aa2Genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag Alignment from Spaln_nt2Genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag Alignment from Pairagon GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag Alignment from Exonerate_protein2genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag Alignment from Exonerate_coding2genome GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag Alignment from GeneWise GGTACCCCTGCCATGCGACGCTCCCTCGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTCCTGACTACTTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAG acaacgtcgtgggtccagtgggtatttggtagtttgctccctcaccccagGGTACCCCTGCAATGCGACGCTCCCTTGTTCCCCAGCTACGGAGTGGCAAATTCAATGTCCTACTCACCACTTATGAGTACATTATAAAGGACAAGCATATTCTTGCGAAGgtaaagctcttgctttttttggtcttgttttacccttaattttggagcag #### Smc3_ID11321_9 --> 2 - 0 Original Alignment agGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagagGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg Alignment from CESAR agGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagagGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg Alignment from Spaln_aa2Genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg Alignment from Spaln_nt2Genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg Alignment from Pairagon AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg Alignment from Exonerate_protein2genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg Alignment from Exonerate_coding2genome AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg Alignment from GeneWise AGGGCAAACGGGAAAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAGGAGAAGGAGGAGCTGGCCCAGTATCAGAAGTGGGATAAGATGAGGCGCGCCCTGGAGTACACCATCTACAACCAGGAGCTCAACGAGACGCGCGCTAAGCTCGACGAG caattgttcagcatattcttcttttgcatttaatttttgacttactctagAGGGCAAACGGGAGAAGATCAATGAGTTGTTGAAGTACATTGAAGAGCGCCTGCACACTCTAGAGGAAGAGAAGGAGGAGCTGGCCCAATATCAGAAGTGGGATAAAATGAGGCGTGTTCTAGAGTACATTATCTATAACCAGGAGCTCAACGAGTCACGTGCTAAGCTTGACAAAgtaatgtgcattgttgctgaacaccttgtttatgaggtgaaaccctatgg #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa #### Smc3_ID11331_19 --> 2 - 1 Original Alignment gtGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAa gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcaggtGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAagtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg Alignment from CESAR gtGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAa gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcaggtGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAagtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg Alignment from Spaln_aa2Genome GTGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAA gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcagGTGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAAgtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg Alignment from Spaln_nt2Genome GTGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAA gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcagGTGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAAgtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg Alignment from Pairagon GTGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAA gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcagGTGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAAgtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg Alignment from Exonerate_protein2genome GTGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAA gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcagGTGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAAgtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg Alignment from Exonerate_coding2genome GTGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAA gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcagGTGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAAgtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg Alignment from GeneWise GTGATCAAGTCAGCCATCGAGGTGCTCTGACTGGAGGTTATTACGACACAAGAAAGTCTCGACTTGAGTTACAGAAAGACGTTAGGAAGGCAGAGGAGGAGCTGGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTACGCAGGAACATTGAAA gttcctccctttggaggcagagagagcaacgctgttgtctgtctctgcagGTGATCAAGTCAGTCATCGAGGTGCTCTGACTGGAGGCTATTATGACACAAGAAAGTCTCGGCTTGAGTTACAGAAAGATGTCAGGAAGGCAGAGGAGGAGCTAGGTGAGCTGGAGGCTAAGCTCAATGAAAACCTCCGCAGGAACATTGAAAgtatgtaactgtcaaattggttggagggaaatgcaatgtattcaagtggg #### Smc3_ID11333_21 --> 0 - 0 Original Alignment CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCA---CAAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg Alignment from CESAR CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCA---CAAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg Alignment from Spaln_aa2Genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCA---CAAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg Alignment from Spaln_nt2Genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCAC---AAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg Alignment from Pairagon CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCAC---AAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg Alignment from Exonerate_protein2genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCA---CAAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg Alignment from Exonerate_coding2genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCA---CAAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg Alignment from GeneWise CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tttagcaacatacctaaacggcaatatctaatctttttttttttttgtagCAACGTAGCTTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGACTCA---CAAGCAGAGCCAGGAACAGATCTGCTTCCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTTGATGCTCTCAATGATGAGATC---CAATTGCAGCAGgtagccctttttacaggtcctagttgtgtttatgtatatctccatatctg #### Smc3_ID11335_23 --> 0 - 1 Original Alignment GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAg tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAggtagcaaccagactgatggcactacccaactcccagatagcaattcacat Alignment from CESAR GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAg tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAggtagcaaccagactgatggcactacccaactcccagatagcaattcacat Alignment from Spaln_aa2Genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAGgtagcaaccagactgatggcactacccaactcccagatagcaattcacat Alignment from Spaln_nt2Genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAGgtagcaaccagactgatggcactacccaactcccagatagcaattcacat Alignment from Pairagon GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAGgtagcaaccagactgatggcactacccaactcccagatagcaattcacat Alignment from Exonerate_protein2genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAGgtagcaaccagactgatggcactacccaactcccagatagcaattcacat Alignment from Exonerate_coding2genome GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAGgtagcaaccagactgatggcactacccaactcccagatagcaattcacat Alignment from GeneWise GAACTTAATGAACTGAGAGAGACAGAAGGTGGTACTGTTCTTACTGCCACAACATCAGAACTTGAAGCTATTAATAAAAGAGTAAAAGATACTATGGCAAGATCAGAAG tataactcaacttaaactaggtgtaattctaactacctctatccttacagGAGCTTAATGAACTAAGAGAGACAGAGGGTGGTACCGTTCTTACTGCCACAACATCAGAGGTTGAAGCTATTAATAAAAGAGTAAAGGATACGATGGCAAGAGCAGAAGgtagcaaccagactgatggcactacccaactcccagatagcaattcacat #### Smc3_ID11340_28 --> 2 - 0 Original Alignment atATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagatATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt Alignment from CESAR atATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagatATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt Alignment from Spaln_aa2Genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt Alignment from Spaln_nt2Genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt Alignment from Pairagon ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt Alignment from Exonerate_protein2genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt Alignment from Exonerate_coding2genome ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt Alignment from GeneWise ATATGATTATGGAGCTAGCCGTGCATGCCCAGTTTATTACCACTACTTTCAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAG aaattatctggtgggtaaactgttccaccctggaccttatccctgttcagATATGATTATGGAGCTAGCGGTGCATGCCCAGTTCATCACGACTACTTTTAGGCCTGAACTGCTTGAGTCAGCTGACAAATTCTATGGTGTAAAGTTCAGAAATAAGgtaagtctgtgttcttataaattgttgtttatatttttatgacttgtgtt #### Smc5_ID5119_14 --> 0 - 0 Original Alignment GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc Alignment from CESAR GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc Alignment from Spaln_aa2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc Alignment from Spaln_nt2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc Alignment from Pairagon GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc Alignment from Exonerate_protein2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc Alignment from Exonerate_coding2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc Alignment from GeneWise GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctctgaagcagtatatcagtctatctttggtcgtttctagGTAATTCAAGAAACACGATTCAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGCAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGTTAAACgtatgtgaattagactgggttcctaaaattatcaacctgtgttttgaatc #### Smc5_ID5120_13 --> 1 - 0 Original Alignment aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagaCCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca Alignment from CESAR aCAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagaCCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca Alignment from Spaln_aa2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca Alignment from Spaln_nt2Genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca Alignment from Pairagon ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca Alignment from Exonerate_protein2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca Alignment from Exonerate_coding2genome ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca Alignment from GeneWise ACAATATGGATTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCATGAGGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGG ttgtggtgagtagtgtttcataaaaatcctcactttatttctaattctagACCGTATGGGTTTTTTTCATATCTTCGGGAGTTATTTGATGCACCTGATCCTGTGATGAGTTACCTTTGCTGCCAGTATCATATTCACGATGTTCCTGTGGGAACTGAAAGGACCCGAGAAAGAATTGAACGGgtaaatatgcaaacagttggaaacttgttatgcttcagcgacagtggcca #### Smc5_ID5122_11 --> 0 - 0 Original Alignment ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct Alignment from CESAR ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct Alignment from Spaln_aa2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct Alignment from Spaln_nt2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct Alignment from Pairagon ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct Alignment from Exonerate_protein2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct Alignment from Exonerate_coding2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct Alignment from GeneWise ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaagaaaagtatttattcatctccccccgttttgtagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtacgtactaactatgctgacaatcaattgatttgccaccttccacctct #### Smc5_ID5127_6 --> 0 - 0 Original Alignment ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc Alignment from CESAR ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc Alignment from Spaln_aa2Genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc Alignment from Spaln_nt2Genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc Alignment from Pairagon ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc Alignment from Exonerate_protein2genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc Alignment from Exonerate_coding2genome ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc Alignment from GeneWise ACCTCTTGCAAAGAGAAAACTGAATACCTAGAGAAAATGGTTCAGAGAAATGAAAGGTACAAACAAGATGTGGAAAGATTCTATGAACGAAAACGACATTTAGATTTAATTGAGATGCTTGAGGCCAAAAGACCATGGGTG gccatatactttttttacataaggtaatagaatcttacgtttcctttcagACCTCTTGCAAAGAGAAA---GAATACCTAGAAAAAATGGTTCACAGAAATGAAAGGTACAAACAAGATGTGGAGAGGTTTTATGAGCGGAAACGACATTTAGATTTAATTGAGACACTTGAGGCCAAAAGACCATGGGTAgtaagtttcatttaacagagttttttcagctgcacttaggaagtaaaggc #### Smc5_ID5129_5 --> 0 - 0 Original Alignment GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTCAAT---TTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc Alignment from CESAR GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTC---AATTTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc Alignment from Spaln_aa2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTC---AATTTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc Alignment from Spaln_nt2Genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTC---AATTTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc Alignment from Pairagon GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTC---AATTTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc Alignment from Exonerate_protein2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTC---AATTTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc Alignment from Exonerate_coding2genome GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTC---AATTTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc Alignment from GeneWise GACAAAGTTGGGGAATTTGCTAAACTCAGCAAAATTGAACTCCTTGAAGCTACTGAGAAGTCAGTTGGTCCTCCAGAGATGCACAGATACCACTGTGAACTCAAAAACTTCAGGGAGAAGGAGAAGCAGCTAGAG gagtctcgtcaatcattaatacttgctactttctcctttgcccctcacagGACCAAGTTGGAGAATTTGCTAAACTTAGC---ATTGAACTCCTGGAAGCTACTGAGAAGTCAGTTACTCCTCCAGAGATACATAGATATCACTGTGAACTC---AATTTCAGGGAAAAGGAGAAGCAGCTTGAGgtaactaagaacagcaattatcttagtattctttaatcttaactacttcc #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAggtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAggtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAGgtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAGgtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAGgtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAGgtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAGgtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG tccctggccagccatatccctgctcttgactccctcccttgcctctgcagGGTGGGGAGGTAACACGCCCATCTGAGGTGTCCAGAGACCTGCGAATTCTGCTACCTCCTCTCATTCCAACGATGCCTCCAGTTGAGGCTCGGTTACTTCAGGCTTTGCCTGCTGAAAGAAGGGGCCAGGAAGAGTTGGAAGTTCCAGgtaaacctgggtcgggcaaggggctgagactgccaattgtaacccttgct #### Sorbs1_ID7896_23 --> 0 - 2 Original Alignment CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATtt taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATttgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga Alignment from CESAR CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATtt taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATttgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga Alignment from Spaln_aa2Genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga Alignment from Spaln_nt2Genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga Alignment from Pairagon CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga Alignment from Exonerate_protein2genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga Alignment from Exonerate_coding2genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga Alignment from GeneWise CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT taactgtagcagtgttgttcatccccaggactaccttcatcttcccacagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtgagtgttctgttcccagctgcaggcctgctttgaaaatcaacatatga #### Sorbs1_ID7905_18 --> 0 - 0 Original Alignment AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTGCAAgtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt Alignment from CESAR AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTGCAAgtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt Alignment from Spaln_aa2Genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTGCAAgtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt Alignment from Spaln_nt2Genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTGCAAgtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt Alignment from Pairagon AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTT gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTgcaagtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt Alignment from Exonerate_protein2genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTGCAAgtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt Alignment from Exonerate_coding2genome AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTGCAAgtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt Alignment from GeneWise AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAG gttaaagcgaaccaactggtcattgtaaacggtgttattttccttgaaagAAACTTTTAGTGGACCAGACGCTGCTTAAGCATGAACAAGAAGAGGCTGATATTGCAGCTCGGCGGCATGTTGGTGTTATACGAACTCATCACCAATTCATCATTAATGAGCGCTTTGGGGACCTCCTTAATATAGATGATACAGCAAAAAGGAAATCTGGGCTGCAAgtaacctttggttattggcgactgtggcttaccccatcacagtcttgctt #### Sorbs1_ID7912_14 --> 0 - 2 Original Alignment AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGAta acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGAtagtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc Alignment from CESAR AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGAta acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGAtagtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc Alignment from Spaln_aa2Genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGATAgtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc Alignment from Spaln_nt2Genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGATAgtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc Alignment from Pairagon AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGATAgtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc Alignment from Exonerate_protein2genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGATAgtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc Alignment from Exonerate_coding2genome AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGATAgtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc Alignment from GeneWise AGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATA acccgctattataactttttactattactattgaatgtttatgtctccagAGTTCAGTGGTCAGTCCAACCCCAGACATTACATCAGAGCCTCCTGGATAgtgtgtagtacctcttatgttttatgttaatggaatggtgggacagtggc #### Sorbs1_ID7914_12 --> 0 - 0 Original Alignment AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag Alignment from CESAR AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag Alignment from Spaln_aa2Genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag Alignment from Spaln_nt2Genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag Alignment from Pairagon AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag Alignment from Exonerate_protein2genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag Alignment from Exonerate_coding2genome AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag Alignment from GeneWise AGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCG ctactaatatccttctgtcactctcagtgtgtggtgtgtggatcttgcagAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCAgtgagaattatatcttgattcacttcatgtctacctctaccccctctcag #### Sorbs1_ID7917_10 --> 2 - 2 Original Alignment caAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAag ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagcaAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAAcggtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg Alignment from CESAR caAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAag ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagcaAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAAcggtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg Alignment from Spaln_aa2Genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagCAAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAACGgtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg Alignment from Spaln_nt2Genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagCAAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAACGgtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg Alignment from Pairagon CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagCAAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAACGgtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg Alignment from Exonerate_protein2genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagCAAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAACGgtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg Alignment from Exonerate_coding2genome CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagCAAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAACGgtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg Alignment from GeneWise CAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG ctggggctgctggcttcaggtctaaagctgccacctcctcccctccccagCAAAGTCTCCCCTTTCTGTGCCGCACTCAAAAAGTGAGATGAACTACATTGAAGGGGAGAAAGTGGTGAAGAGGTCCGCCACACTCCCACTCCCAGCCCGCTCTTCTTCGCTCAAGTCCAGCCCCGAACGgtaagtcatagtattgagacactagcctacagagtctaatctgagtgctg #### Sorbs1_ID7918_9 --> 2 - 1 Original Alignment atGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACa aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagatGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACagtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg Alignment from CESAR atGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACa aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagatGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACagtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg Alignment from Spaln_aa2Genome ATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACA aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagATGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACAgtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg Alignment from Spaln_nt2Genome ATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACA aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagATGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACAgtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg Alignment from Pairagon ATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACA aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagATGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACAgtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg Alignment from Exonerate_protein2genome ATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACA aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagATGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACAgtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg Alignment from Exonerate_coding2genome ATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACA aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagATGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACAgtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg Alignment from GeneWise ATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACA aattgtggactctgacagtatagatcaaatctctgtaaactttcctacagATGATGATTCTGATGTCCGTTCCCCTCAATACTCCTTCTCTGATGACAgtaagtatgaaagcctcttcttgtcaggaataaatggggtgctggggctg #### Sorcs3_ID10577_5 --> 0 - 2 Original Alignment CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACtg aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACtggtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa Alignment from CESAR CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACtg aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACtggtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa Alignment from Spaln_aa2Genome CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACTG aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACTGgtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa Alignment from Spaln_nt2Genome CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACTG aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACTGgtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa Alignment from Pairagon CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACTG aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACTGgtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa Alignment from Exonerate_protein2genome CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACTG aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACTGgtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa Alignment from Exonerate_coding2genome CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACTG aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACTGgtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa Alignment from GeneWise CTTTATAGCTCCATGGACTTCGGCAGACGATGGCAACTCATGCATGAACGCATCACGCCCAACAGGTTTTACTG aacacctatgtccttcttcatgtgtcccctcgccacactctccctctcagCTCTATAGCTTGATGGATTTTAGGAGGCGCTGGCAACTTATGCATGAGCAAATCACACCCAACAGGTTTTACTGgtaggaatgtcttgtgtactctgcatctctaggataaagggagtagcgaa #### Sorcs3_ID10597_8 --> 0 - 0 Original Alignment GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct Alignment from CESAR GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct Alignment from Spaln_aa2Genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct Alignment from Spaln_nt2Genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct Alignment from Pairagon GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct Alignment from Exonerate_protein2genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct Alignment from Exonerate_coding2genome GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct Alignment from GeneWise GTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCCCAGATAAAGCTGCCCAAGTACTCCTTGCCAAAG tatatgtggacttgcgtctttgtctgatgacattgtgctttgctttgcagGTAACAATAGGTGGGCAAGCAACCTACTACGTGTCATATCAAAGAGAGGCCTTTGCCCAGATCAAGCTACCTAAGTACTCCTTGCCAAAGgtaattctcatagtactatctgttttcttggaagctgttagaccaaggct #### Sorcs3_ID10632_21 --> 0 - 1 Original Alignment CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATggtgagttctgaggtgcaagacctcacttgagatggaagttctagattata Alignment from CESAR CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATggtgagttctgaggtgcaagacctcacttgagatggaagttctagattata Alignment from Spaln_aa2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgaggtgcaagacctcacttgagatggaagttctagattata Alignment from Spaln_nt2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCT---TGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgaggtgcaagacctcacttgagatggaagttctagattata Alignment from Pairagon CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACAT---TCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgaggtgcaagacctcacttgagatggaagttctagattata Alignment from Exonerate_protein2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgaggtgcaagacctcacttgagatggaagttctagattata Alignment from Exonerate_coding2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgaggtgcaagacctcacttgagatggaagttctagattata Alignment from GeneWise CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG tgatagacagtctagtccaatgagcaaagaagtcttcactgtttctctagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAAGACACAAAAGAGATTGCAGTACATGgtgagttctgaggtgcaagacctcacttgagatggaagttctagattata #### Sorcs3_ID10633_22 --> 2 - 0 Original Alignment aaTACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagaaTACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac Alignment from CESAR aaTACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagaaTACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac Alignment from Spaln_aa2Genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac Alignment from Spaln_nt2Genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac Alignment from Pairagon AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac Alignment from Exonerate_protein2genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac Alignment from Exonerate_coding2genome AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac Alignment from GeneWise AATACTTCCAGTCACAGCTCTTATCGTTCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAAGCGAGCTCTGATTAAA aagccctgtttaccccagtcctctccacacactttctgtttcaaccttagAATACTTCCAGTCACAGCTCTTATCATTCTCACCAAATCTTGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTAATTAAGAGAGCTCTGATAAAAgtgagttgtgcagtacttccaatgtcattcttggactaagaaaaagaaac #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccaatccttatatggcaaagcatttactaacctactcctctcttcacagaTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACcggtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACcg tccaatccttatatggcaaagcatttactaacctactcctctcttcacagaTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACcggtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag #### Sptbn2_ID617_12 --> 0 - 1 Original Alignment GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAagtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt Alignment from CESAR GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAg cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAagtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt Alignment from Spaln_aa2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAAgtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt Alignment from Spaln_nt2Genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAAgtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt Alignment from Pairagon GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAAgtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt Alignment from Exonerate_protein2genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAAgtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt Alignment from Exonerate_coding2genome GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAAgtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt Alignment from GeneWise GGCCGACTGCAGTCTCAGGACTTGGGCAAGCACCTGGCTGGAGTGGAGGACCTCCTGCAGCTACACGAACTGGTGGAGGCGGACATCGCGGTTCAGGCTGAGAGGGTTCGAGCGGTCAGCGCCTCTGCCCTGCGTTTCTGCGACCCAGGGAAAG cagtagttgggtggccagaagggcatcaatttccgttttctctttttcagGGGCGATTGCAGTCTCAGGACCGGGGCCAGCACCTCGCCGGGGTGGAAGACTTTCTACAGTTACATGAACTAGTGGAGGCAGATATTGCAGTGCAATCTGAGCGAGTCCAAGCAGTCAGTGCCTCTGCTACAAGGTTCTGTGACCCAGGCAAAAgtaagtgctggggagagggaaatgtgctagaaaacagggaatgtgctagt #### Sptbn2_ID621_16 --> 0 - 2 Original Alignment GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGag tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGGTGCGAATGGAGAACAT---CGTGGACTCCTGGAGGCTGGGCGCCAACTGGTGTCCAAGGGAAATATCCACGCTGAGAAGATCCAGGAGAAAGCTGACTCCATTGAGAAGaggtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag Alignment from CESAR GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGag tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGGTGCGAATGGAGAACAT---CGTGGACTCCTGGAGGCTGGGCGCCAACTGGTGTCCAAGGGAAATATCCACGCTGAGAAGATCCAGGAGAAAGCTGACTCCATTGAGAAGaggtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag Alignment from Spaln_aa2Genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAG---C tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGGTGCGAATGGAGAACATCgtggactcctggaggctgggcgccaactggtgtccaagggaaatatccacgctgagaagatccaggagaaagctgactccattgagaagaggtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag Alignment from Spaln_nt2Genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGG ACGCC tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGgtgcgaatggagaacatcgtggactcctggaggctgggcgccaactggtgtccaagggaaatatccacgctgagaagatccaggagaaagctgactccattgagAAGAGgtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag Alignment from Pairagon GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGGTGCGAATGGAGAACA---TCGTGGACTCCTGGAGGCTGGGCGCCAACTGGTGTCCAAGGGAAATATCCACGCTGAGAAGATCCAGGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag Alignment from Exonerate_protein2genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGGTGCGAATGGAGAACAT---CGTGGACTCCTGGAGGCTGGGCGCCAACTGGTGTCCAAGGGAAATATCCACGCTGAGAAGATCCAGGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag Alignment from Exonerate_coding2genome GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGGTGCGAATGGAGAACAT---CGTGGACTCCTGGAGGCTGGGCGCCAACTGGTGTCCAAGGGAAATATCCACGCTGAGAAGATCCAGGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag Alignment from GeneWise GAATATGTCTTGTCTCACACGGAGATGCCAGGGACACTGCAGGCGGCAGATGCAGCCATTAAAAAGCTGGAAGACTTCATGAGCACTATGGACGCCAATGGAGAGCGCATCCGCGGACTCCTGGAGGCTGGACGTCAGCTGGTGTCCAAGGGCAATATCCATGCTGAGAAGATCCAAGAGAAGGCGGACTCCATCGAGAAGAG tacaatgtgcacgctactagaatggagttaggactgatgttgccttgcagGAATATGTGTTGTCTCACACCGAGATGCCAGGAACACTGCAGGTGGCAGATGCAGCCATTAAAAAGCTAGAGGAATTCATAAGCACTATGGGTGCGAATGGAGAACAT---CGTGGACTCCTGGAGGCTGGGCGCCAACTGGTGTCCAAGGGAAATATCCACGCTGAGAAGATCCAGGAGAAAGCTGACTCCATTGAGAAGAGgtgaggtcagatgatatctacccatttgtcaatgagctgggtgagatcag #### Sptbn2_ID623_18 --> 0 - 0 Original Alignment CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt Alignment from CESAR CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt Alignment from Spaln_aa2Genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt Alignment from Spaln_nt2Genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt Alignment from Pairagon CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt Alignment from Exonerate_protein2genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt Alignment from Exonerate_coding2genome CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt Alignment from GeneWise CTGAGACTCTGGATCGATGAGAAGATGCTGACAGCTCAGGATGTGTCCTATGACGAAGCTCGCAACCTGCACACCAAGTGGCAGAAACACCAGGCATTCATGGCCGAGCTTGCAGCCAACAAGGACTGGCTGGACAAAGTGGACAAG ccactcccactccgaaggagccaccttacttacggtttccttctccacagTTGAGACTCTGGATCGATGACAAGATGCTATCGGCTCAGGATATTTCCTACGATGAAGCACGAAACCTATATACTAAGTGGCAGAAACACCAAGCTTTCATGGCTGAGCTAGCAGCCAACAGGGACTGGCTGGGCAAAGTAGACAAGgtgagtagtatggatagacccatccaatgggtggtgaagacttttgtggt #### Sptbn2_ID624_19 --> 0 - 0 Original Alignment GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACTT---ACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTGTGCTGCCCTGGAGAGTTGGCTCGAGAGCCTACAAGCCCAGCTTCACTCAGATGATTATGGCAAGGACCTCACCAGTGTCAACATCCTACTGAAGAAACAACAAgtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg Alignment from CESAR GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACTT---ACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTGTGCTGCCCTGGAGAGTTGGCTCGAGAGCCTACAAGCCCAGCTTCACTCAGATGATTATGGCAAGGACCTCACCAGTGTCAACATCCTACTGAAGAAACAACAAgtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg Alignment from Spaln_aa2Genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGT----------------- tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACTT---ACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTGTGCTGCCCTGGAGAGTTGgctcgagagcctacaagcccagcttcactcagatgattatggcaaggacctcaccagtgtcaacatcctactgaagaaacaacaagtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg Alignment from Spaln_nt2Genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAG-- tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACT---TACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTgtgctgccctggagagttggctcgagagcctacaagcccagcttcactcagatgattatggcaaggacctcaccagtgtcaacatcctactgaagaaacaacaagtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg Alignment from Pairagon GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACT---TACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTGTGCTGCCCTGGAGAGTTGGCTCGAGAGCCTACAAGCCCAGCTTCACTCAGATGATTATGGCAAGGACCTCACCAGTGTCAACATCCTACTGAAGAAACAACAAgtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg Alignment from Exonerate_protein2genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACTT---ACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTGTGCTGCCCTGGAGAGTTGGCTCGAGAGCCTACAAGCCCAGCTTCACTCAGATGATTATGGCAAGGACCTCACCAGTGTCAACATCCTACTGAAGAAACAACAAgtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg Alignment from Exonerate_coding2genome GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACTT---ACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTGTGCTGCCCTGGAGAGTTGGCTCGAGAGCCTACAAGCCCAGCTTCACTCAGATGATTATGGCAAGGACCTCACCAGTGTCAACATCCTACTGAAGAAACAACAAgtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg Alignment from GeneWise GAAGGGCGGGAGCTGACTCTTGAAAAGCCAGAACTCAAAGTCGTAGTGTCAGAGAAGCTGGAGGACCTGCACCGGCGCTGGGATGAACTGGAGACCACTACCCAAGCCAAGGCCCGCAGTCTTTTTGATGCCAACCGGGCAGAGCTATTTGCTCAAAGCTGTTCTGCCCTGGAGAGCTGGCTGGAGAGCCTGCAGGCCCAGCTGCACTCAGATGACTATGGCAAAGACCTCACCAGTGTCAACATTCTGCTGAAGAAGCAACAG tgacatttgtctgtgtttgtgacagaaattggttctgtgtcatttcacagGAGGGGCGGGAGCTGACTTTTGAAAAGCCAGAATTGAAATCTGTAGTTTCAGAGAAGCTGGAGGAGCTGCATCGGCACTGGGATGAACTT---ACCACTACCCAAGCCAAGGCCCGCAGTCTGTTTGATGCTAATCGGGCAGAGTTATTTGCTCAAAGTTGTGCTGCCCTGGAGAGTTGGCTCGAGAGCCTACAAGCCCAGCTTCACTCAGATGATTATGGCAAGGACCTCACCAGTGTCAACATCCTACTGAAGAAACAACAAgtgagctggtgggagggggaggggacagtagcttatgaacaccccattgg #### Sptbn2_ID630_25 --> 0 - 0 Original Alignment ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAGTGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg Alignment from CESAR ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAGTGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg Alignment from Spaln_aa2Genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAG---TGCCACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg Alignment from Spaln_nt2Genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAGTGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg Alignment from Pairagon ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAGTGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg Alignment from Exonerate_protein2genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAG---TGCCACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg Alignment from Exonerate_coding2genome ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAG---TGCCACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg Alignment from GeneWise ATGCTTCGGGACAAATTCCGAGAGTTCTCCAAGGACACCAGCACCATTGGCCAGGAGCGCGTAGACAGTGCCAATGCACTGGCCAATGGGCTCATTGCTGGGGGCCATGCTGCACGGGCCACTGTGGCCGAGTGGAAGGACAGTCTCAATGAGGCCTGGGCTGACCTGCTGGAGCTGCTGGACACAAGAGGTCAGGTGCTGGCTGCTGCGTATGAGCTGCAGCGCTTCCTGCATGGAGCCCGCCAAGCCCTGGCACGGGTACAGCACAAGCAGCAGCAGCTTCCAGACGGGACTGGCCGTGACCTCAATGCTGCTGAGGCCCTGCAGCGCCGGCACTGTGCCTATGAGCACGACATCCAAGCCCTCAGCACTCAG atcactccttgaggagaggcctaatggagtttttatgtgtttgttcatagATGCTACAAGATAAATTCCGAGAATTCTCCAAGGACACTAGCACCAGTGGCCAGGAACATGTAGACAGTGCCAATGCACTAGCGAACGGGCTCATTGCTGGGGGCCATGGAGCACGGGCCACTGTTGCTGAATGGAAGGATAGTCTAAATGAACCCTGGGCTGACCTGTTGGACTTACTGGACACAAAAGGTCAAGTGCTGGCTGCTGCATATGAGCTTCAGCGCATCCTGCATGGTGCCCGTCAAGCCCTTGCACAGGTGCAGCACATGCAGCAGCACCTTCCTGACGGGACTGGTCATGACCTAAACGCTGCTGAGGCACTGCAGTGC---CACTGTGCCTATGAGCAAGACATTCAAGCCCTAAGTGCTCAGgtaagtcaccctcatatgaatttcagatatttcatatggaattgaaattg #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCcggtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCcggtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCCGgtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCCGgtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCCGgtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCCGgtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCCGgtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtaatctaccagctctgcctgtcctgatgtccttttcttctgtgcagGTCCAGCAAGTTCATGACGATGGCCAACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAGCCCCGgtaagtctcataatgcctggcttcctccacaagttacatgatgctactaa #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATaggtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATaggtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGC---CCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagaTTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt Alignment from CESAR cTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagaTTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagATTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagATTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt Alignment from Pairagon CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagATTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt Alignment from Exonerate_protein2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagATTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt Alignment from Exonerate_coding2genome CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagATTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt Alignment from GeneWise CTTACAGGATGGCAAAGAATACCTATTCCAGGCCAAGGACGAG acccaaaaaagacagatttgtagctctcatcaatgtgtttttgtcctcagATTACAGGATGGTAAAGAATACCTATTCCAAGCCCGAGATGAGgtaggtccccccctgccccctgtggcttttcttgctaccagctaggtttt #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttactaatgttctttcttgcagaGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTaggtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttactaatgttctttcttgcagaGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTaggtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttactaatgttctttcttgcagAGCACAGGGCACACGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGCCCCATAGTCCACCCCAATCACAGTTTTCTGCATCAGCTACAGACCTACCAAGGCAGTTTGGCTGCTAGgtaagtgtggtgaattgaaggttgaatatgcatatattgaggtgtcaatt #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagtTGCCACAGCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACgggtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from CESAR tTCCCACAGCTGCACC---------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagtTGCCACAGCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACgggtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagttgccacagCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Spaln_nt2Genome TTCCCACAGCTGCACC---------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagTTGCCACAGCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Pairagon TTCCCACAGCTGCACC---------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagTTGCCACAGCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagttgccacagCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from Exonerate_coding2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagttgccacagCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta Alignment from GeneWise TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gttgaggctccaatgtgctggtgaacaactcctaatggcttcctttgtagttgccacagCTGCACCAGTTGCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCATGTATACCTGGATGGGGACGGgtgagtgggtcctctttgtagaaacaagatggggttgagaagaataggta #### Stip1_ID1999_2 --> 0 - 0 Original Alignment GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatacaaatctgtggggtagagatgtataaaaatgtttctcttctttcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt Alignment from CESAR GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatacaaatctgtggggtagagatgtataaaaatgtttctcttctttcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt Alignment from Spaln_aa2Genome ------------GAGCAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatacaaatctgtggggtagagatgtataaaaATGTTTCTCTTCTTTCAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt Alignment from Spaln_nt2Genome GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatacaaatctgtggggtagagatgtataaaaatgtttctcttctttcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt Alignment from Pairagon GTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatacaaatctgtggggtagagatgtataaaaatgtttctcttctttcagGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt Alignment from Exonerate_protein2genome CAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatacaaatctgtggggtagagatgtataaaaatgtttctcttctttCAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt Alignment from Exonerate_coding2genome CAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG gatacaaatctgtggggtagagatgtataaaaatgtttctcttctttCAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt Alignment from GeneWise GAGCAGGTGAATGAGCTAAAGGAGAAGGGCAATAAGGCCCTGAGTGCTGGGAACATTGATGATGCCTTACAGTGCTACTCTGAGGCAATTAAACTAGATCCCCAGAACCATGTGCTCTACAGCAATCGCTCTGCAGCCTACGCCAAGAAAGGAGACTACCAGAAGGCCTATGAGGACGGCTGCAAGACTGTTGACCTGAAGCCTGACTGGGGCAAG acaaatctgtggggtagagatgtataaaaatgtttctcttcttt---CAGGTGAATGAGCTAAAGGAAAAGGGCAATAAGGCCCTCAGTGCAGGGAACATTGATGATGCCTTACATTGCTACTCTGAGGCAACTAAACTGGATCCCCAGAACCATGTGCTGTACAGCAATCACTCAGCACCCTATACCAAGAAGGGAGATTACCAGAAGGGCTATGAGGATGGCTGCAAGACCGTAGTCCTGCGGCCTGATTGGGGCAAGgtaaggttttcacttcctaattggatggctgactataggttacactgctt #### Stx3_ID3300_6 --> 0 - 1 Original Alignment CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTagtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc Alignment from CESAR CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTa ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTagtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc Alignment from Spaln_aa2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTAgtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc Alignment from Spaln_nt2Genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTAgtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc Alignment from Pairagon CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTAgtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc Alignment from Exonerate_protein2genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTAgtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc Alignment from Exonerate_coding2genome CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTAgtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc Alignment from GeneWise CACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTA ggttataacaatatggtttgatctgtgatggtttctccctcccctcccagCAGTCCGTCCTCTCACAGAAATATGTGGAGGTGATGACTAAGTACAATGAGGCCCAGGTGGACTTTCGAGAACGCAGCAAAGGCCGCATCCAACATCAACTTGAAATTAgtcagcgatagaagtcggtgcattttctgccatgtggttggccaccctcc #### Stx5a_ID2336_8 --> 2 - 0 Original Alignment gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcaggaGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc Alignment from CESAR gaGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcaggaGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc Alignment from Spaln_aa2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcagGAGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc Alignment from Spaln_nt2Genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcagGAGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc Alignment from Pairagon GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcagGAGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc Alignment from Exonerate_protein2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcagGAGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc Alignment from Exonerate_coding2genome GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcagGAGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc Alignment from GeneWise GAGGTGGTCCCATAATTTTGGGAGCAGAGTCCCGAGCTTCCAGGGACGTGGCTATTGACATGATGGACCCTAGAACAAGCCAGCAGCTTCAGCTCATTGATGAGCAG agcttgaacttcctccgagcaccagaatgactgtctcctctctcctgcagGAGGGGGTCCCATAATCTTGGGAGCAGAATCACGAGCTTCCAGAGATGTGGCCATTGACATGATGGACCCTAGAACGAGCCAACAACTGCAGCTCATTGATGAGCAGgtaagtatattccagattgggtgaagctgatcttgataaaccggggtacc #### Stx5a_ID2337_9 --> 0 - 2 Original Alignment GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGag tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGaggtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta Alignment from CESAR GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGag tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGaggtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta Alignment from Spaln_aa2Genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta Alignment from Spaln_nt2Genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta Alignment from Pairagon GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta Alignment from Exonerate_protein2genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta Alignment from Exonerate_coding2genome GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta Alignment from GeneWise GATTCCTACATCCAGAGTCGGGCAGACACCATGCAGAACATTGAGTCTACAATCGTTGAGCTGGGCTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAGGAGGAAACGATTCAGAG tctcagatatctggaagtcttgatctcttggtcttctgctatcctcatagGATTCCTACATCCAGAGTCGTGCAGACACCATGCAGAACATTGAGTCAACAACTGTTGAGCTGGCGTCCATTTTTCAGCAATTGGCACACATGGTTAAAGAACAAGAGGAATCAATCCAGAGgtgagtccgccctaaaaaaagctatacaaccagtttagtagattgcatta #### Sufu_ID9897_5 --> 0 - 2 Original Alignment ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCatgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat Alignment from CESAR ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCatgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat Alignment from Spaln_aa2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCATgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat Alignment from Spaln_nt2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCATgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat Alignment from Pairagon ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCATgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat Alignment from Exonerate_protein2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCATgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat Alignment from Exonerate_coding2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCATgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat Alignment from GeneWise ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aactaagattgcccattcagggggagccccctctgatcattatatttcagATTGTTGGTGTCTGCACTGAGGAGTTACATTCCACACAACAGTGGAATGGACAAGGAGTCCTGGAACTAATACGGGCAGTACCCATgtaggcttgagttgaaggcctggaacatgagcaagacgaaagatagctat #### Sufu_ID9902_8 --> 2 - 2 Original Alignment acACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTcc gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagacACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCccgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca Alignment from CESAR acACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTcc gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagacACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCccgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca Alignment from Spaln_aa2Genome ACACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTCC gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagACACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCCCgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca Alignment from Spaln_nt2Genome ACACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTCC gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagACACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCCCgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca Alignment from Pairagon ACACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTCC gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagACACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCCCgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca Alignment from Exonerate_protein2genome ACACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTCC gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagACACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCCCgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca Alignment from Exonerate_coding2genome ACACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTCC gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagACACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCCCgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca Alignment from GeneWise ACACAGAGCAGATCCGGGAGACCCTGAGGCGGGGACTGGAGATTAACAGCAAACCTGTCCTTCCACCAATCAATTCTCAGCGACAGAACGGCCTCACCCACGACAGGGCTCC gtcacctcatagatatcatagcatcctgatgctggccatgttccctgcagACACAGAGCAAATTCGGGAGACCTTGAGGCGGGAGCTAGAGGTTAATAGCAAACCTGTCCTTCCACCGATCAATTCTCAGCGACAGAATGGTCTCACCCATGACAGGGCCCCgtaaggtggggttagttaaaacaaaaggtgtttcaggggacatggggaca #### Sufu_ID9908_9 --> 1 - 2 Original Alignment gAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAag gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcaggAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCaggtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta Alignment from CESAR gAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAag gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcaggAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCaggtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta Alignment from Spaln_aa2Genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcagGAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCAGgtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta Alignment from Spaln_nt2Genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcagGAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCAGgtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta Alignment from Pairagon GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcagGAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCAGgtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta Alignment from Exonerate_protein2genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcagGAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCAGgtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta Alignment from Exonerate_coding2genome GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcagGAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCAGgtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta Alignment from GeneWise GAGCCGCAAGGACAGTTTGGGCAGCGACAGCTCCACGGCCATCATCCCCCACGAGCTGATCCGCACACGGCAGCTCGAGAGCGTGCATCTAAAATTTAACCAAGAGTCGGGAGCCCTCATCCCTCTCTGCCTAAG gttcactgggaccctgcttgctgcatgttcttttttttattgtttttcagGAGCCACAAAGACAGCTTGGGCAGTGACAGCTCTACGGCCATCATCCCTCATGAGCTCATCCGCACACAGCAGCTTGAGAGTGTGCATCTAAAGTTTAACCAAGAGTCAGCAGCCCTCATCTCTCTCTGTCTCAGgtatactagcactgatacaagtcaggcctgcatgactctgatgaacatta #### Suv420h1_ID140_2 --> 2 - 2 Original Alignment gtCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTag tacggagtggaaaaggatctgctaccctaaggattctattttcctttcaggtCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCaggtgagtatagctctttctgtacataatataatgtgctccaactaaagagt Alignment from CESAR gtCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTag tacggagtggaaaaggatctgctaccctaaggattctattttcctttcaggtCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCaggtgagtatagctctttctgtacataatataatgtgctccaactaaagagt Alignment from Spaln_aa2Genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG tacggagtggaaaaggatctgctaccctaaggattctattttcctttcagGTCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCAGgtgagtatagctctttctgtacataatataatgtgctccaactaaagagt Alignment from Spaln_nt2Genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG tacggagtggaaaaggatctgctaccctaaggattctattttcctttcagGTCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCAGgtgagtatagctctttctgtacataatataatgtgctccaactaaagagt Alignment from Pairagon GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG tacggagtggaaaaggatctgctaccctaaggattctattttcctttcagGTCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCAGgtgagtatagctctttctgtacataatataatgtgctccaactaaagagt Alignment from Exonerate_protein2genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG tacggagtggaaaaggatctgctaccctaaggattctattttcctttcagGTCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCAGgtgagtatagctctttctgtacataatataatgtgctccaactaaagagt Alignment from Exonerate_coding2genome GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG tacggagtggaaaaggatctgctaccctaaggattctattttcctttcagGTCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCAGgtgagtatagctctttctgtacataatataatgtgctccaactaaagagt Alignment from GeneWise GTCATGGTAACTCGGGATTTGAAGGGCAGAGCCGCTATGTGCCGTCCTCTGGAATGTCCGCCAAGGAGCTCTGTGAGAACGATGACTTAGCAACCAGTTTGGTTCTTGATCCCTACTTAGGTTTTCAGACACACAAAATGAACACTAG tacggagtggaaaaggatctgctaccctaaggattctattttcctttcagGTCATGGAAATTCGGTACTTGAAGGGCAGAGCCGCTATGTGTCATCCACTGGAATGTCCACTAAGGAACTCTGTGAGAATGATGATTTCACGACCAGTTTGGTTTTTGATCCCTACCTAGGTTTTCAGACGCACAAAATGAATACCAGgtgagtatagctctttctgtacataatataatgtgctccaactaaagagt #### Suv420h1_ID141_3 --> 1 - 2 Original Alignment cGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGag atgcatggcagatcggtataagtagctaatattttccttttgtttttcagtGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGaggtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc Alignment from CESAR cGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGag atgcatggcagatcggtataagtagctaatattttccttttgtttttcagtGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGaggtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc Alignment from Spaln_aa2Genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atgcatggcagatcggtataagtagctaatattttccttttgtttttcagTGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc Alignment from Spaln_nt2Genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atgcatggcagatcggtataagtagctaatattttccttttgtttttcagTGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc Alignment from Pairagon CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atgcatggcagatcggtataagtagctaatattttccttttgtttttcagTGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc Alignment from Exonerate_protein2genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atgcatggcagatcggtataagtagctaatattttccttttgtttttcagTGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc Alignment from Exonerate_coding2genome CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atgcatggcagatcggtataagtagctaatattttccttttgtttttcagTGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc Alignment from GeneWise CGCCTTTCCTTCGAGGAGCTCGAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAG atgcatggcagatcggtataagtagctaatattttccttttgtttttcagTGCCTTTCCTTCGAGGAGCTCAAGGCATATTTCAAAAGCTGACAGTTTTTCTCACAACAATCCTGTGAGgtaaggagtgagttttttatttatcaagaatctcacaagattttggctcc #### Suv420h1_ID145_7 --> 2 - 0 Original Alignment atTGCAGACCTAACTGTAAG cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagatTGCAGACCTAACTGTAAGgtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc Alignment from CESAR atTGCAGACCTAACTGTAAG cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagatTGCAGACCTAACTGTAAGgtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc Alignment from Spaln_aa2Genome ATTGCAGACCTAACTGTAAG cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagATTGCAGACCTAACTGTAAGgtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc Alignment from Spaln_nt2Genome ATTGCAGACCTAACTGTAAG cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagATTGCAGACCTAACTGTAAGgtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc Alignment from Pairagon ATTGCAGACCTAACTGTAAG cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagATTGCAGACCTAACTGTAAGgtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc Alignment from Exonerate_protein2genome ATTGCAGACCTAACTGTAAG cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagATTGCAGACCTAACTGTAAGgtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc Alignment from Exonerate_coding2genome ATTGCAGACCTAACTGTAAG cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagATTGCAGACCTAACTGTAAGgtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc Alignment from GeneWise cccatatcttacaaacagtatgttgcatcctgcgtccccttctcttccagattgcagacctaactgtaaggtaagtacaagaaactccaatacactccaaagcccaaaagattatttggc #### Syt12_ID536_4 --> 0 - 0 Original Alignment ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAA---CATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc Alignment from CESAR ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAA---CATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc Alignment from Spaln_aa2Genome ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAA---CATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc Alignment from Spaln_nt2Genome ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAAC---ATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc Alignment from Pairagon ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAAC---ATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc Alignment from Exonerate_protein2genome ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAA---CATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc Alignment from Exonerate_coding2genome ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAA---CATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc Alignment from GeneWise ATCCAGAGGAATGCCTATTCCATCTTCTTCGATGAGAAGTTCTCTGTCCCCCTGGATCCCACAGCCCTGGAGGAGAAGAGCCTTAGATTTTCTGTGTTTGGTATCGACGAGGATGAGCGGAATGTGAGCACCGGCGTGGTGGAGCTGAAGCTGTCCGTTCTGGATCTCCCGCTGCAGCCCTTCAGTGGCTGGCTATACTTGCAGGACCAGAATAAG ctactgagatgtagagctgcaagttgcttcatttccttctccctccccagATCCATAGAAATGCTTAT------TTGTTTGATGAGAGGTTGTCTGTCCCCTTAGACCCCACTATCCTGGAAGAGAAGAGTCTTAGATTTTCTGTGTTTGGTATTGATGAGGATGAA---CATGTAAGTACCAGTGTTGTGGAGTTGAAATTGTCCATTTTAGATCTACCACTGCAGCCGTTCAGTGGATGGCTATATTTGCAGGACCAAAATAATgtaagagtactttactagttcctctatgttaagagtgtcagagtgacctc #### Syt12_ID537_3 --> 0 - 0 Original Alignment CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from CESAR CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Spaln_aa2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Spaln_nt2Genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTCA---TGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Pairagon CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTCA---TGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Exonerate_protein2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from Exonerate_coding2genome CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag Alignment from GeneWise CGGGTCCCTCCTTGGAATGACCAGCGGACCACTACTCGGGGACCACCCAGCCGCAAAGGCAGCCTTAGTATAGAAGACACCTTTGAAAGCATCAGTGAGCTGGGACCCCTGGAGCTGATGGGCCGGGAACTGGACTTAGCCCCCTATGGTACTCTCCGAAAGTCACAGTCGGCTGACTCTCTGAATTCCATCTCCTCTGTGAGCAACACCTTTGGGCAGGATTTCACCCTGGGCCAGGTGGAGGTGAGCATGGACTATGATGGAGCCTCCCACACCCTCCACGTGGCAGTACTACAAGGCAAAGACCTCCTGGAGCGCGAGGAGGCCACCTTCGAGTCCTGCTTCATGCGTGTCAGTCTGCTGCCAGACGAACAGATCGTGGGCATCTCCCGG cttgcctcagtctcataatatacttatcatgtgagttgtttcttctccagCAGGTCTCTCCTTGGAATGGCCAACGAACCACTACCCGGGGGCCACCCAGCCGCAAAGGCAGCCTTAGCATAGAAGACAGCTTTGAAAGCGTTAGTCAGCTGGGACCACTTGAGCTGATAGGCCAGGAACTTGGCTTGGCCCCCTATGGCGCTCCCCGAAAGTCACAGTCCGCTGATCCACTTAATTCTGTGTCTTCAGTGAGCAACACATTTGGACAAGATTTC---ATGGCCCAAGTGGAGGTGAGCATGGACTATGATGGGGCATCCCATAATCTTCATGTTGTAGTATTACATGGCAAAGACCTGCTGGAGCGTGAGGAGGCCACCTTTGAGTCCTGCTTTATGCGTGTTATACACCTGCCAAAGGAACAGATTGTTGGCATTTCCCAGgtaagtgtggtggggacagaggggtactgggcttcctgaagcttgcctag #### Syt7_ID2825_6 --> 1 - 0 Original Alignment gTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagaCTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct Alignment from CESAR gTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagaCTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct Alignment from Spaln_aa2Genome GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagACTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct Alignment from Spaln_nt2Genome GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagACTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct Alignment from Pairagon GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagACTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct Alignment from Exonerate_protein2genome GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagACTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct Alignment from Exonerate_coding2genome GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagACTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct Alignment from GeneWise GTTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACCGCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATG ccccacttaaggccttcaatcacggggagcgtttctctccccttatgcagACTGCCTGCAGGAGGGGAGGCTGTCAATACAGCGCCAGTTCCTGGTCAAACACCACATGATGAATCTGACTGCAGAACAGAGACCCGCTCCTCTGTATCAGACCTAGTGAACTCCCTTACCAGTGAGATGCTCACAgtgaggatggttgggtctaggggcttatggttaaaaagtagccaatatct #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatag Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatac Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatag Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatag Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatag Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatag Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatag Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatag #### Syvn1_ID1389_8 --> 1 - 2 Original Alignment gCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACAct tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccaggCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACActgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag Alignment from CESAR gCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACAct tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccaggCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACActgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag Alignment from Spaln_aa2Genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccagGCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag Alignment from Spaln_nt2Genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccagGCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag Alignment from Pairagon GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccagGCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag Alignment from Exonerate_protein2genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccagGCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag Alignment from Exonerate_coding2genome GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccagGCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag Alignment from GeneWise GCAGTTCAAGAAAGCTGTGACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACT tcttcatgtcacacccctgttgcccttctcttgatttattacgaacccagGCACTTCAAGAAAGCCGTAACAGATGCCATCATGTCTCGCCGAGCCATCCGCAACATGAACACACTgtaagtgcacttgttctgactacccacacacactctagaggtggtagaag #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt #### Taf5_ID10094_3 --> 1 - 0 Original Alignment gTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacaggTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg Alignment from CESAR gTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacaggTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg Alignment from Spaln_aa2Genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg Alignment from Spaln_nt2Genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg Alignment from Pairagon GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg Alignment from Exonerate_protein2genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg Alignment from Exonerate_coding2genome GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg Alignment from GeneWise GTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGAGTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAACAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAGCAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAG tgattatccccagacattcacataagaaccctgaccctcgtattctacagGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTACGAGTGCTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAATGAGACCATGCTGGACTTTCGGACAAGTAAATTCGTTCTCCGCATCTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTTCAGGAGAAGCAGAACAATCAGATCTGGAACATTGTGCAGGAGCACCTCTACATTGACATCTTCGATGGAATGCCTCGTAGTAAGCAACAGATCGATGCAATGGTGGGCAGCCTGGCAGGCGAGGCAAAACGAGAGGCGAACAAATCAAAGgtattagcgtttaccaagaatgctggtgcaggaacagactgccagcaatg #### Taf5_ID10099_7 --> 2 - 2 Original Alignment atCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATag atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagatCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACaggtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga Alignment from CESAR atCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATag atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagatCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACaggtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga Alignment from Spaln_aa2Genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACAGgtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga Alignment from Spaln_nt2Genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACAGgtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga Alignment from Pairagon ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACAGgtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga Alignment from Exonerate_protein2genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACAGgtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga Alignment from Exonerate_coding2genome ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACAGgtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga Alignment from GeneWise ATCTTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTTGAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAG atacgagctctcacaaaacaaatttcacagtggtgtttttttttaaatagATCTTAGTCTTATAGATAAAGAATCAGATGATGTATTAGAGAGAATGATGGATGAGAAAACTGCAAGTGAGTTGAAAATCCTGTACGGTCACAGTGGGCCTCTCTATGGAGCCAGCTTCAGTCCAGACAGgtaagatccaaacaaaactaaaagtgctgccagactgaacttaggactga #### Taf5_ID10100_8 --> 1 - 2 Original Alignment gAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTcg ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagaAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTtggtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat Alignment from CESAR gAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTcg ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagaAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTtggtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat Alignment from Spaln_aa2Genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagAAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTTGgtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat Alignment from Spaln_nt2Genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagAAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTTGgtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat Alignment from Pairagon GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagAAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTTGgtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat Alignment from Exonerate_protein2genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagAAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTTGgtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat Alignment from Exonerate_coding2genome GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagAAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTTGgtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat Alignment from GeneWise GAACTACCTACTCTCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAGGACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGACCGAGTAGCTCG ataaggagttaagtttgaagaaaatcaaattctcttttttctctttgtagAAACTACTTACTCTCATCTTCAGAGGATGGAACTGTCAGACTCTGGCCTCTTCAGATATTCACTTGCTTGGTTGGTTATAAAGGACATAACTATCCAGTATGGGACATGCAGTTCTCTCCATATGGATATTATTTTGTGTCA------CATGATCGAGTGGCTTGgtgagcacactacaatcttcaaattcctgttgctactagacatgaatcat #### Tbc1d12_ID7683_6 --> 1 - 1 Original Alignment gCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTg actttgtggtacatggtgcataatgggttcagtttgacctttctccacaggCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTggtgagtcttcccatgtttagatattcccttgcataaatatccatctctta Alignment from CESAR gCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTg actttgtggtacatggtgcataatgggttcagtttgacctttctccacaggCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTggtgagtcttcccatgtttagatattcccttgcataaatatccatctctta Alignment from Spaln_aa2Genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggttcagtttgacctttctccacagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTGgtgagtcttcccatgtttagatattcccttgcataaatatccatctctta Alignment from Spaln_nt2Genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggttcagtttgacctttctccacagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTGgtgagtcttcccatgtttagatattcccttgcataaatatccatctctta Alignment from Pairagon GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggttcagtttgacctttctccacagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTGgtgagtcttcccatgtttagatattcccttgcataaatatccatctctta Alignment from Exonerate_protein2genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggttcagtttgacctttctccacagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTGgtgagtcttcccatgtttagatattcccttgcataaatatccatctctta Alignment from Exonerate_coding2genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggttcagtttgacctttctccacagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTGgtgagtcttcccatgtttagatattcccttgcataaatatccatctctta Alignment from GeneWise GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggttcagtttgacctttctccacagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATCACTCCTGgtgagtcttcccatgtttagatattcccttgcataaatatccatctctta #### Tbc1d12_ID7686_9 --> 0 - 0 Original Alignment GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta Alignment from CESAR GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta Alignment from Spaln_aa2Genome GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta Alignment from Spaln_nt2Genome GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta Alignment from Pairagon GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta Alignment from Exonerate_protein2genome GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta Alignment from Exonerate_coding2genome GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta Alignment from GeneWise GGTGGCCCATATCACGATGTTTTGCATAGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTAT gagcccaagtaaggacttagaacagcaatgacactgctctgcttttttagGGGACTCCATATCATGATGTTTTACATAGTATCTTAAGGGCATATATGTGTTACAGACCTGATGTGGGCTATgtcagtggtctatccctgacaaatttgcacatagccagaagtgaagctta #### Tcirg1_ID180_7 --> 1 - 0 Original Alignment cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtgttcttcacccccccccccagGTCTT Alignment from CESAR cTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagcTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtagcactacctctcttccccagGTCTT Alignment from Spaln_aa2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtgttcttcacccccccccccagGTCTT Alignment from Spaln_nt2Genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtgttcttcacccccccccccagGTCTT Alignment from Pairagon CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtgttcttcacccccccccccagGTCTT Alignment from Exonerate_protein2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtgttcttcacccccccccccagGTCTT Alignment from Exonerate_coding2genome CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtgttcttcacccccccccccagGTCTT Alignment from GeneWise CTTCCACTGTCATGTCTTCCCATACCTGGAGCAGGAGGAAGCCCGGTTCAGGACCTTGCAGCAGCTGCAGCAGCAAAGCCAGGAGCTTCAGGAA GTCCT atccattatccttggcttcaacacaagatattctcatatctcactcctagCTTTCACTGCCATGTCTTCTCATATCTGGAACAGGAGGAGGCCCGGTTTAGGACCTCACAGCAGTTGCAGCAGCAGAGCCAGGAACTTCAGGAGgtgagtgcctatggaatctgaagtgttcttcacccccccccccagGTCTT #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagacataaatattttctcccctgcagGGTGAGCCT Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagactcgccactttcatctctctcagGGTGAGCCT Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagacataaatattttctcccctgcagGGTGAGCCT Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagacataaatattttctcccctgcagGGTGAGCCT Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagacataaatattttctcccctgcagGGTGAGCCT Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagacataaatattttctcccctgcagGGTGAGCCT Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagacataaatattttctcccctgcagGGTGAGCCT Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcaaggagagttgaggggaggctgcatttgttttgtttttctcaacagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGACAgtaggcgtaaagggaagacataaatattttctcccctgcagGGTGAGCCT #### Tctn3_ID7998_3 --> 1 - 1 Original Alignment aTCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACt tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccaggTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACtgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa Alignment from CESAR aTCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACt tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccaggTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACtgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa Alignment from Spaln_aa2Genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccagGTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACTgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa Alignment from Spaln_nt2Genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccagGTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACTgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa Alignment from Pairagon ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccagGTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACTgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa Alignment from Exonerate_protein2genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccagGTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACTgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa Alignment from Exonerate_coding2genome ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccagGTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACTgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa Alignment from GeneWise ATCTTCAAGTTGGGTATGTGTGGACAACTCTCTTATGTTCAGGAGCAACTCCCCGTTCCCTTCCAGAGTTTTCACGGACTCCAGTGGAACGACACAGTTTTGTGTCCGTGTGAACAACT tctgcctaactgcatcttttctcttctcttgtttttctatatcaaaccagGTCTTCAAGTTGGGTATGTGTGGGCAACTCTCTGATGTTTAGGAGTAACTCTCCATTCCCTTCCAGAGTCTTCACGGACTCCAGTGGAACAACACAATTTTGTGTCCGTGTGAACAACTgtaaaaagaagtgagttcaacaaccctcacaatctagccatttatgaaaa #### Tdrd1_ID12203_4 --> 2 - 2 Original Alignment ggTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAag tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagggTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAaggtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta Alignment from CESAR ggTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAag tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagggTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAaggtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta Alignment from Spaln_aa2Genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta Alignment from Spaln_nt2Genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta Alignment from Pairagon GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta Alignment from Exonerate_protein2genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta Alignment from Exonerate_coding2genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta Alignment from GeneWise GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG tgcataaggctgacaggtacactgttgcctgtggttctctcctctgtcagGGTCATTAAGGTGCTCCCAATGCAAGCAGATGTACTACTGCTCCACAGCCTGCCAGAGGAGAGACTGGTCTTCACACACCACAATCTGTAGGCCTGTACAGCAAAGgtaagtactggcttcttcaacaaaggctcagctttggttatcatattgta #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGT---TAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGT---TAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Exonerate_coding2genome AAGATAATAAATCACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTGAGGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG CATACATGCAGGGTGGGCTGCCTCAACCCTTGATACCTTTCACTTTTCAGGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat #### Tdrd1_ID12208_9 --> 0 - 1 Original Alignment GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAggttcgcaagtgaaattccttctattccttcttaactatcctagttccatc Alignment from CESAR GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAggttcgcaagtgaaattccttctattccttcttaactatcctagttccatc Alignment from Spaln_aa2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgttcgcaagtgaaattccttctattccttcttaactatcctagttccatc Alignment from Spaln_nt2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgttcgcaagtgaaattccttctattccttcttaactatcctagttccatc Alignment from Pairagon GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgttcgcaagtgaaattccttctattccttcttaactatcctagttccatc Alignment from Exonerate_protein2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgttcgcaagtgaaattccttctattccttcttaactatcctagttccatc Alignment from Exonerate_coding2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgttcgcaagtgaaattccttctattccttcttaactatcctagttccatc Alignment from GeneWise GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAGGAAAGCAG tgagacctgattcatttcagtcacacacccctttccttcactctttgcagGCCTTAAAGTGCTGTGTGTCAGGTGTGATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGGTTCGCAAgtgaaattccttctattccttcttaactatcctagttccatc #### Tdrd1_ID12210_11 --> 2 - 1 Original Alignment gtGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCc actactcagttctcatccatgatttctatgaactgcttgtgtctttacaggtGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCcgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag Alignment from CESAR gtGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCc actactcagttctcatccatgatttctatgaactgcttgtgtctttacaggtGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCcgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag Alignment from Spaln_aa2Genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actactcagttctcatccatgatttctatgaactgcttgtgtctttacagGTGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCCgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag Alignment from Spaln_nt2Genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actactcagttctcatccatgatttctatgaactgcttgtgtctttacagGTGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCCgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag Alignment from Pairagon GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actactcagttctcatccatgatttctatgaactgcttgtgtctttacagGTGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCCgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag Alignment from Exonerate_protein2genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actactcagttctcatccatgatttctatgaactgcttgtgtctttacagGTGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCCgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag Alignment from Exonerate_coding2genome GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actactcagttctcatccatgatttctatgaactgcttgtgtctttacagGTGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCCgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag Alignment from GeneWise GTGCATTGGAGGACGTTGGAAGAGTGACAGTTGAGAGCAAGATTGTGACAGACAGAAATGCCCTGATCCCCAAAGTGCTGACTTTGAATGTGGGTGATGAGTTCTGTGGCGTGGTTGCCCACATCCAGACACCAGAGGACTTCTTTTGTCAGCAGCTGCAGAGCGGCC actactcagttctcatccatgatttctatgaactgcttgtgtctttacagGTGCATTGGAGGATGTTGGTAGAGTGACAGTTGAGGGCAAAATTGTTACAGACAAAAATGCTCTGCTTCCCAAAGTGCTGACTTTGAATCTGGGTGATGAGTTCTGTGGTGTAGTTGCCCACATTGAGACTCCAGAAGAGCTCTTTTGCCAGCAGTTGCAGAGTGGCCgtaagaccattttctaagtcttgtcttcaaaaaaaacactccactcatag #### Tdrd1_ID12211_12 --> 2 - 1 Original Alignment acAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAg aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagacAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAATC------TCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAggtatagatacctttgcctacaatccagtgaagccacatatccttgataac Alignment from CESAR acAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAg aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagacAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAATC------TCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAggtatagatacctttgcctacaatccagtgaagccacatatccttgataac Alignment from Spaln_aa2Genome ACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAG aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagACAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAATC------TCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAGgtatagatacctttgcctacaatccagtgaagccacatatccttgataac Alignment from Spaln_nt2Genome ACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAG aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagACAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAAT------CTCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAGgtatagatacctttgcctacaatccagtgaagccacatatccttgataac Alignment from Pairagon ACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAG aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagACAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAAT------CTCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAGgtatagatacctttgcctacaatccagtgaagccacatatccttgataac Alignment from Exonerate_protein2genome ACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAG aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagACAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAATC------TCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAGgtatagatacctttgcctacaatccagtgaagccacatatccttgataac Alignment from Exonerate_coding2genome ACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAG aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagACAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAATC------TCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAGgtatagatacctttgcctacaatccagtgaagccacatatccttgataac Alignment from GeneWise ACAAGCTTGCGGAGCTTCAGGAATCCCTCAGTGAATACTGTGGCCATGTGATTCCACGCTCTGACTTTTATCCAACCATTGGGGACGTGTGCTGTGCTCAGTTCTCAG aggtatgtgtcattgtttctgagggttccgatgccttgtggtcttaaaagACAAGCTGGCAGAGCTGCAGGAGTCTCTCAGTGAGTATTGTGGCCATGTAATC------TCTGATTTTTATCCCACCATCAGTGACGTGTGTTGTACTCAAGCCTCAGgtatagatacctttgcctacaatccagtgaagccacatatccttgataac #### Tdrd1_ID12219_20 --> 2 - 1 Original Alignment aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa agtcttatgcatttttatgatgggccccatacttgtcatataatttccagaaAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGCA---AAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAagtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag Alignment from CESAR aaAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAa agtcttatgcatttttatgatgggccccatacttgtcatataatttccagaaAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGCA---AAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAagtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag Alignment from Spaln_aa2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccatacttgtcatataatttccagAAAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGCA---AAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAAgtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag Alignment from Spaln_nt2Genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccatacttgtcatataatttccagAAAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGC---AAAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAAgtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag Alignment from Pairagon AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccatacttgtcatataatttccagAAAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGC---AAAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAAgtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag Alignment from Exonerate_protein2genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccatacttgtcatataatttccagAAAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGCA---AAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAAgtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag Alignment from Exonerate_coding2genome AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccatacttgtcatataatttccagAAAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGCA---AAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAAgtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag Alignment from GeneWise AAAATCAAGAGAAGCTGTGTGTGTTAGCAGCTGAATTGTTAGAACACTGTAATGCTCAGAAGGGCCAGCCAGCCTACAGACCACGGACCGGCGACGCGTGCTGTGCTAAGTACACAA agtcttatgcatttttatgatgggccccatacttgtcatataatttccagAAAACCAAGAGAAGCTGTGTGTATTAGTGGCTGAGCTATTAGAACACTGTAATGCA---AAGGGGCGGCCAGCATACAGGCCACGGACTGGTGATGCATGTTGTGCGAAATACACAAgtaagtttacttgtgagcatggcattgcagggcccttgtcttctgagaag #### Tectb_ID11563_6 --> 1 - 2 Original Alignment gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg catttttataaacaagattgcttttagtcagcatcctctcccacctgcaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGgggtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac Alignment from CESAR gTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGgg catttttataaacaagattgcttttagtcagcatcctctcccacctgcaggTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGgggtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac Alignment from Spaln_aa2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttataaacaagattgcttttagtcagcatcctctcccacctgcagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac Alignment from Spaln_nt2Genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttataaacaagattgcttttagtcagcatcctctcccacctgcagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac Alignment from Pairagon GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttataaacaagattgcttttagtcagcatcctctcccacctgcagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac Alignment from Exonerate_protein2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttataaacaagattgcttttagtcagcatcctctcccacctgcagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac Alignment from Exonerate_coding2genome GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttataaacaagattgcttttagtcagcatcctctcccacctgcagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac Alignment from GeneWise GTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGG catttttataaacaagattgcttttagtcagcatcctctcccacctgcagGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCTGACTTCATGTACCCTTTACAGTGGCAGCTGATCAATAAGGGgtatgtgtcaaaatcaaattccaagacaaatcaggtctctcctactctac #### Tectb_ID11566_9 --> 2 - 1 Original Alignment gcAGGGCATTTTCCGGCCTCTGTGACTTCTCAg ttatcactccttactacccctttgatgttttgtaaattatcctttaacaggtCATGGATTCACCGACCTCTGTGACTTCTCAggtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca Alignment from CESAR gcAGGGCATTTTCCGGCCTCTGTGACTTCTCAg ttatcactccttactacccctttgatgttttgtaaattatcctttaacaggtCATGGATTCACCGACCTCTGTGACTTCTCAggtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca Alignment from Spaln_aa2Genome GCAGGGCATTTTCCGGCCTCTGTGACTTCTCAG ttatcactccttactacccctttgatgttttgtaaattatcctttaacagGTCATGGATTCACCGACCTCTGTGACTTCTCAGgtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca Alignment from Spaln_nt2Genome GCAGGGCATTTTCCGGCCTCTGTGACTTCTCAG ttatcactccttactacccctttgatgttttgtaaattatcctttaacagGTCATGGATTCACCGACCTCTGTGACTTCTCAGgtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca Alignment from Pairagon GCATTTTCCGGCCTCTGTGACTTCTCAG ttatcactccttactacccctttgatgttttgtaaattatcctttaacaggtcatGGATTCACCGACCTCTGTGACTTCTCAGgtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca Alignment from Exonerate_protein2genome ttatcactccttactacccctttgatgttttgtaaattatcctttaacaggtcatggattcaccgacctctgtgacttctcaggtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca Alignment from Exonerate_coding2genome ttatcactccttactacccctttgatgttttgtaaattatcctttaacaggtcatggattcaccgacctctgtgacttctcaggtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca Alignment from GeneWise ttatcactccttactacccctttgatgttttgtaaattatcctttaacaggtcatggattcaccgacctctgtgacttctcaggtaatgtgatgagtcagttcctagaagcatcacactatcacttttgcaca #### Tex40_ID1869_3 --> 2 - 0 Original Alignment caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagccTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg Alignment from CESAR caTCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagccTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg Alignment from Spaln_aa2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg Alignment from Spaln_nt2Genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg Alignment from Pairagon CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg Alignment from Exonerate_protein2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg Alignment from Exonerate_coding2genome CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg Alignment from GeneWise CATCGTCTACTTCAGAATCACTAATATTCAGCCTATGGAAGCCACATCGAACCTACTGGACAGAGCAGCAGAACAGG tgatagtctgagtacctaacaaatgctattctctccgtggtctcattcagCCTCATCTACGTCAGAATCATTAATATTCAGCCTATGGAAGCCACATCAAACCTATTGGACAGAGCAGCAGAACAGGgtaggaagaaggatctggcaaatactattgttattggggagcagcaggtg #### Tjp2_ID5264_22 --> 0 - 2 Original Alignment ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGaggtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc Alignment from CESAR ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGaggtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc Alignment from Spaln_aa2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGAGgtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc Alignment from Spaln_nt2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGAGgtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc Alignment from Pairagon ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGAGgtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc Alignment from Exonerate_protein2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGAGgtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc Alignment from Exonerate_coding2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGAGgtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc Alignment from GeneWise ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG gcctcagcattgccctaaatttctaaattgtcttgtgctccctcctacagATTGAAATAGCTCAGAAGCACCCTGACATATATGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCCGGCCTTCCCCCACACATGAGgtgagcgttgtttggctgtcagctaatgcatttggaaacagtgaggtacc #### Tjp2_ID5269_18 --> 2 - 0 Original Alignment ccACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagcaACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta Alignment from CESAR ccACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagcaACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta Alignment from Spaln_aa2Genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagCAACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta Alignment from Spaln_nt2Genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagCAACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta Alignment from Pairagon CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagCAACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta Alignment from Exonerate_protein2genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagCAACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta Alignment from Exonerate_coding2genome CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagCAACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta Alignment from GeneWise CCACAATCAACGTGAATTCAGCCAACGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGAAAG gattcaaggttgctcttactgggctcatcttgaagtgcttctctttctagCAACTATCAATGTGAATTCAGCCAATGATGGCTGGTTTGGCAGCTTGAAGGACAGCATTCAGCAGCAGCAAAACGAAGCAGTCTGGGTCTCTGAAGGGAAGgtacgtggcatagattcaccaaatgcttcctcaatgagtagttgcatgta #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCagtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tgctccacaggagaagtgtcctcaccccagtaactgtattctttcattagATTTTTTCATTGGGATATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCGGACAAATACCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCAATGCAgtacgtgaactcccagtttccagtttcaatttgaatgattgcttggttgc #### Tle4_ID3621_16 --> 0 - 2 Original Alignment AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACATC------TGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGA------GGTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTaggtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca Alignment from CESAR AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCC---------CCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACATC------TGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGA------GGTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTaggtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca Alignment from Spaln_aa2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACATC------TGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGA------GGTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTAGgtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca Alignment from Spaln_nt2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCC---------CCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACAT------CTGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGAG------GTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTAGgtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca Alignment from Pairagon AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCC---------CCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACAT------CTGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGAG------GTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTAGgtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca Alignment from Exonerate_protein2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACATC------TGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGA------GGTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTAGgtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca Alignment from Exonerate_coding2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACATC------TGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGA------GGTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTAGgtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca Alignment from GeneWise AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattgctcttctgaacaggctttcattatctctctccaccccagAATCGGGATAATTACATC------TGCAGGTTGCTCCCTGATGGTCGAACCTTAGTTGTTGGGGGA------GGTACACTTTCAATCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCCGAACTGACATCCTCAGCCCCAGCTGCGCCTGCATGCTATGCTCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTATGGGACCTGCACAACCAGACACTTGTTAGgtgtggtagctgaatatacttctatctggaaaggtagtgtcaacatgtca #### Tle4_ID3623_15 --> 1 - 0 Original Alignment aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagaGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta Alignment from CESAR aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagaGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta Alignment from Spaln_aa2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagAGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta Alignment from Spaln_nt2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagAGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta Alignment from Pairagon AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagAGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta Alignment from Exonerate_protein2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagAGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta Alignment from Exonerate_coding2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagAGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta Alignment from GeneWise AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tgttcattgcctcctcctgttatatgcttttttccttttttaaaacacagAGCATACTCCTTTCATGTAAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTGATTGGCCCAGGAATACCTCGACATGCTCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGCGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCCCAGCTAGCCTGTTTGgtaaagaagcagagaaatatatctcacagtggtaaagattagcattacta #### Tle4_ID3628_11 --> 0 - 0 Original Alignment GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt Alignment from CESAR GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt Alignment from Spaln_aa2Genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt Alignment from Spaln_nt2Genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt Alignment from Pairagon GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt Alignment from Exonerate_protein2genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt Alignment from Exonerate_coding2genome GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt Alignment from GeneWise GATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCCTGGACAAGACACGACTCCTCAAGAAAGATGCCCCCATCAGCCCCGCTTCTGTTGCATCTTCCAGCAGTACTCCTTCCTCCAAATCCAAAGAGCTTAGCCTT aaaaagaaatacagttgacactctcacctagtcttctgcctgtgacccagGATCCATCTTCCCCCCGAGGAAGCCCAGCACATTCCCCAAGGGAGAATGGCTTGGACAAGACACGACTCCTCAGGAGAGATGCCCCCATCAGCCCAGCATCTGTTGCTTCCTCCAGCAGTATGCCTTCATCTGAATCCAAAGAGCTTAGCCTTgtgagatgctcccttattggagctgcatgtctagggctaggtagctcttt #### Tle4_ID3630_9 --> 0 - 0 Original Alignment AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgcccattcttccctctagAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg Alignment from CESAR AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgcccattcttccctctagAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg Alignment from Spaln_aa2Genome AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgcccattcttccctctagAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg Alignment from Spaln_nt2Genome AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgcccattcttccctctagAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg Alignment from Pairagon AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgcccattcttccctctagAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg Alignment from Exonerate_protein2genome ACAGAGACTCCATCAAGAGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgCCCATTCTTCCCTCTAGAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg Alignment from Exonerate_coding2genome ACAGAGACTCCATCAAGAGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgCCCATTCTTCCCTCTAGAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg Alignment from GeneWise AGCTCTTCCGTATCCCCATCAGCCAGTTTCCGGGGTTCTGAGAAACATAGGAACTCTACAGACTATTCCTCAGAGAGCAAAAAGCAGAAAACAGAAGAAAAAGAAATTGCAGCTCGCTAT tagcttcacacttgttgcagcaattgttccctgcccattcttccctctagAGCTCTTCTGTATCTCCATCAGCAAGCTTCCGAGGTTCTGAAAAACAAAGGAACTCTACAGACTACTCTTCGGAAAGCAAAACACAGGAGACGGAAGAAAAAGAAATTGCGGCTCGCTATgtatgattatctatccctcattactttgggaggaatggtttgtggttttg #### Tle4_ID3668_5 --> 0 - 0 Original Alignment GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc Alignment from CESAR GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc Alignment from Spaln_aa2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc Alignment from Spaln_nt2Genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc Alignment from Pairagon GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc Alignment from Exonerate_protein2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc Alignment from Exonerate_coding2genome GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc Alignment from GeneWise GCAGAGATTGTTAAACGACTAAATGCTATCTGTGCACAGGTCATTCCTTTCCTGTCCCAAGAG ttctaactaccagtttactctcttataagctgtgccttctcaaaccacagGCAGAGATTGTCAAGCGTCTAAATGCTATTTGTGCACAGGTCATTCCATTCCTATCACAAGAAgtgagtttatagaccttaactgagagttgtggaatttcatcaaccatttc #### Tle4_ID3691_2 --> 0 - 2 Original Alignment GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACag attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACaggtttgcggtgagattagcagtcccttctgattccttagttctggtattgt Alignment from CESAR GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACag attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACaggtttgcggtgagattagcagtcccttctgattccttagttctggtattgt Alignment from Spaln_aa2Genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACAGgtttgcggtgagattagcagtcccttctgattccttagttctggtattgt Alignment from Spaln_nt2Genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACAGgtttgcggtgagattagcagtcccttctgattccttagttctggtattgt Alignment from Pairagon GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACAGgtttgcggtgagattagcagtcccttctgattccttagttctggtattgt Alignment from Exonerate_protein2genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACAGgtttgcggtgagattagcagtcccttctgattccttagttctggtattgt Alignment from Exonerate_coding2genome GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACAGgtttgcggtgagattagcagtcccttctgattccttagttctggtattgt Alignment from GeneWise GCACCGCATCAGCCTGCTCAACCCTTCAAATTTACAATTTCAGAATCCTGTGATCGGATTAAGGAAGAGTTTCAGTTTTTACAGGCTCAATACCACAG attaaggctaggaagctaggctaagtgactgcattgctttctgtttacagGCGCCACATCAGCCTGCTCAATCATTTAAATTTACAATATCAGTATCCTGTGATCAAATTAAGGAAGAGTACCAATTTTTACAGGCTCAATATCACAGgtttgcggtgagattagcagtcccttctgattccttagttctggtattgt #### Tll2_ID8099_20 --> 2 - 0 Original Alignment agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagagTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct Alignment from CESAR agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagagTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct Alignment from Spaln_aa2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct Alignment from Spaln_nt2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct Alignment from Pairagon AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct Alignment from Exonerate_protein2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct Alignment from Exonerate_coding2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct Alignment from GeneWise AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgaccataatatgtatatttgttacagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACTAAAGAGCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGCTGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTGAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAAGCTGATTGCGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCCAGGCTTGGCCGCTTCTGTGGCTCAGGGgtatgtctgtagggtgtcatgttcttgccaccttagattgcagttcatct #### Tll2_ID8100_19 --> 0 - 1 Original Alignment ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAg tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAggtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg Alignment from CESAR ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAg tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAggtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg Alignment from Spaln_aa2Genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg Alignment from Spaln_nt2Genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg Alignment from Pairagon ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg Alignment from Exonerate_protein2genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg Alignment from Exonerate_coding2genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg Alignment from GeneWise ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagctcatgtctctctgggcgatcagcctgccacctctctgttcagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAGTGTGCCTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACCGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtgggtaacctaatagccactgtggggccatgcttcaggccttcttggtg #### Tll2_ID8105_14 --> 2 - 1 Original Alignment agGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAg tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagagGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAggtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca Alignment from CESAR agGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAg tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagagGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAggtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca Alignment from Spaln_aa2Genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca Alignment from Spaln_nt2Genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca Alignment from Pairagon AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca Alignment from Exonerate_protein2genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca Alignment from Exonerate_coding2genome AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca Alignment from GeneWise AGGTGGATGAGTGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGCTGTGTAAACACACTCGGCAGCTACACGTGTGCCTGTGACCCTGGCTACGAACTGGCTGCCGACAAGAAGACATGTGAAG tgaacctccattgtggtgacagtttagatgtttgtttgtttttgatacagAGGTGGATGAATGCTCCTGGCCAGACCATGGTGGATGTGAGCAGCGATGTGTGAACACACTCGGTACCTACACATGTGCCTGTGACCCTGGCTATGAACTTGCTGCTGATAAGAACACATGTGAAGgtgagtgttggaacttttaggttacagtaataagaaaccacttggcaaca #### Tll2_ID8108_12 --> 2 - 0 Original Alignment ccATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagctATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCAT---------GCTTTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag Alignment from CESAR ccATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagctATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCAT---------GCTTTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag Alignment from Spaln_aa2Genome CCATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagCTATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCAT---------GCTTTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag Alignment from Spaln_nt2Genome CCATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagCTATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCATG---------CTTTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag Alignment from Pairagon CCATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagCTATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCATG---------CTTTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag Alignment from Exonerate_protein2genome CCATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagCTATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCAT---------GCTTTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag Alignment from Exonerate_coding2genome CCATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagCTATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCAT---------GCTTTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag Alignment from GeneWise CCATGTGTGGGGGAGACATAACCAAAGATGCAGGCCAGATTCAGTCTCCCAACTACCCTGACGACTACAGACCTTCCAAGGAATGTGTGTGGAGGATCACAGTGCCCGACGGGTTCCATGTGGGACTTACCTTCCAGTCCTTCGAG ccagtcacctgtttggcaataccatctttatttgcttattatttcttcagCTATGTCTGGGGGCGACATAACTAAAGATGCTGGCCAGATTCAATCTCCCAAGTTTCCAGATGACTACACACCTTCCAGGGAACGGGTGTGGAGAATCTCAGTCCCGGATGGGTTCCATGCT---------TTTCAATCCTTTGAAgtcagcggctaggatgctaccctttattgtgttacagggacagcactaag #### Tll2_ID8111_10 --> 0 - 1 Original Alignment ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGggtgagtggacttaagccctcacagccttgagggctaatgtgtgttctact Alignment from CESAR ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGggtgagtggacttaagccctcacagccttgagggctaatgtgtgttctact Alignment from Spaln_aa2Genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGGgtgagtggacttaagccctcacagccttgagggctaatgtgtgttctact Alignment from Spaln_nt2Genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGGgtgagtggacttaagccctcacagccttgagggctaatgtgtgttctact Alignment from Pairagon ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGGgtgagtggacttaagccctcacagccttgagggctaatgtgtgttctact Alignment from Exonerate_protein2genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGGgtgagtggacttaagccctcacagccttgagggctaatgtgtgttctact Alignment from Exonerate_coding2genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGGgtgagtggacttaagccctcacagccttgagggctaatgtgtgttctact Alignment from GeneWise ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGGGGAG gtctcgttgggtctcattgttgtaagctccttctctctggatccctgcagATCATCCTAAATTTCACCTCCATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCCCTGTTGGGTGAgtggacttaagccctcacagccttgagggctaatgtgtgttctact #### Tll2_ID8116_8 --> 1 - 1 Original Alignment aGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAg cttcttaattgcgccttttttcctttataattatctgtacttatctctagaGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAggtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat Alignment from CESAR aGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAg cttcttaattgcgccttttttcctttataattatctgtacttatctctagaGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAggtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat Alignment from Spaln_aa2Genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttcttaattgcgccttttttcctttataattatctgtacttatctctagAGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAGgtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat Alignment from Spaln_nt2Genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttcttaattgcgccttttttcctttataattatctgtacttatctctagAGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAGgtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat Alignment from Pairagon AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttcttaattgcgccttttttcctttataattatctgtacttatctctagAGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAGgtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat Alignment from Exonerate_protein2genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttcttaattgcgccttttttcctttataattatctgtacttatctctagAGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAGgtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat Alignment from Exonerate_coding2genome AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttcttaattgcgccttttttcctttataattatctgtacttatctctagAGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAGgtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat Alignment from GeneWise AGGAGTTTTCTTAGACACCATCCTCCCCCGTCGAGACGACAATGGCGTCAGGCCAACCATTGGCCAACGCGTGCGGCTCAGTCAGGGAGATATAGCTCAAGCCAGGAAGCTGTACAAATGCCCAG cttcttaattgcgccttttttcctttataattatctgtacttatctctagAGGGGTTTTTTTAGACACTATGCTCCCCCGTCAGGAAGGCAATGGCATCAAGCCAACCATTGGCCAACACGTGAGACTCAGTCAGGGTGAGATAGCCCAAGCTAGGAAGCTGTATGAATGTCCAGgtaggtgtggatcatgagtaagctttcactgttttatctgcttgttacat #### Tm9sf3_ID8137_13 --> 1 - 2 Original Alignment gCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCaa tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcaggCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCaagtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa Alignment from CESAR gCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCaa tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcaggCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCaagtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa Alignment from Spaln_aa2Genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcagGCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa Alignment from Spaln_nt2Genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcagGCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa Alignment from Pairagon GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcagGCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa Alignment from Exonerate_protein2genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcagGCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa Alignment from Exonerate_coding2genome GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcagGCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa Alignment from GeneWise GCAGTGGACGAGTTTCCTGTCTGCGGCGTCGACCGCGATCTACGTTTACATGTACTCCTTTTACTACTACTTCTTCAAAACCAA tgactcttttgtctaatgccaaataatcatgactcctgttgttgctgcagGCAGTGGACGAGTTTCCTGTCTGCGGCATCAACTGCTATCTATGTTTATATGTACTCCTTTTACTACTACTTCTTCAAAACCAAgtgattgtgcaatgtaagtaaagagagatatccaacaaaaacagcgctaa #### Tm9sf3_ID8147_3 --> 2 - 1 Original Alignment atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagatGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGggtcagttgactattccagttgactattccaaagcttgattagaagatgct Alignment from CESAR atGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGg ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagatGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGggtcagttgactattccagttgactattccaaagcttgattagaagatgct Alignment from Spaln_aa2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtcagttgactattccagttgactattccaaagcttgattagaagatgct Alignment from Spaln_nt2Genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtcagttgactattccagttgactattccaaagcttgattagaagatgct Alignment from Pairagon ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtcagttgactattccagttgactattccaaagcttgattagaagatgct Alignment from Exonerate_protein2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtcagttgactattccagttgactattccaaagcttgattagaagatgct Alignment from Exonerate_coding2genome ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtcagttgactattccagttgactattccaaagcttgattagaagatgct Alignment from GeneWise ATGATGTGATGCCAGGCACTTACTGTGAAATTGACTTAGATAAAGAGAAGAGAGATGCGTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTACATAGATGACTTACCAATATGGG ttagtacatactgaaaatacataggttaaaagtaatctgcactcttccagATGATGTGATGCCAGGCACATATTGTGAGATTGACTTAGATAAAGAGAAGAGAGATACTTTTGTGTATGCTATCAAGAATCACTATTGGTATCAGATGTATATAGATGACTTACCAATATGGGgtcagttgactattccagttgactattccaaagcttgattagaagatgct #### Tmc1_ID4840_5 --> 1 - 0 Original Alignment gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtaggGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag Alignment from CESAR gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtaggGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag Alignment from Spaln_aa2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag Alignment from Spaln_nt2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag Alignment from Pairagon GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag Alignment from Exonerate_protein2genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag Alignment from Exonerate_coding2genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag Alignment from GeneWise GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG agaaactataaacatcactgtgtctaactttctgttgctgccttgtgtagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagtgttctcctcgctcaatctaagggcaacattgttctggcggtaag #### Tmc1_ID4847_2 --> 2 - 1 Original Alignment tgCAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAa aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacagcgCAAAGCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCagtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc Alignment from CESAR tgCAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAa aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacagcgCAAAGCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCagtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc Alignment from Spaln_aa2Genome CCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAA aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacagcgcaaagCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCAgtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc Alignment from Spaln_nt2Genome TGCAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAA aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacagCGCAAAGCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCAgtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc Alignment from Pairagon TTGCAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAA aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacaGCGCAAAGCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCAgtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc Alignment from Exonerate_protein2genome CAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAA aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacagcgCAAAGCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCAgtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc Alignment from Exonerate_coding2genome CAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAA aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacagcgCAAAGCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCAgtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc Alignment from GeneWise TTGCAAATCCAAGTGGAGGAGAAAGAAGAGGATACAGAGGAAAGCTCAA aactgcgcatgccagcttcggacgctggcagacgctcccctaacccacaGCGCAAAGCCAGGTGGAGGAGAAAGAGGTGGATACAGAGGAAAGCTCCAgtactaaagggcctgcagcttggcaatacattattgctcatggtagaatc #### Tmem138_ID2880_3 --> 0 - 1 Original Alignment AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAg ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGggtatgggaacagtggctttaggtacactatggtttctaatggcacatctg Alignment from CESAR AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAg ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGggtatgggaacagtggctttaggtacactatggtttctaatggcacatctg Alignment from Spaln_aa2Genome AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAG ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGGgtatgggaacagtggctttaggtacactatggtttctaatggcacatctg Alignment from Spaln_nt2Genome AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAG ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGGgtatgggaacagtggctttaggtacactatggtttctaatggcacatctg Alignment from Pairagon AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAG ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGGgtatgggaacagtggctttaggtacactatggtttctaatggcacatctg Alignment from Exonerate_protein2genome AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAG ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGGgtatgggaacagtggctttaggtacactatggtttctaatggcacatctg Alignment from Exonerate_coding2genome AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAG ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGGgtatgggaacagtggctttaggtacactatggtttctaatggcacatctg Alignment from GeneWise AACGTGCGATGGAAAAACTCCAGCAGCTTCAGCTGGACAAACGGCCTGCAAACACTGTTTGTATTCCAGAGACTAG ttctccaggcacatattgggagttgtaaccttctctaactcgggtttcagAATGTGCGGTGGAAAAATTCCAGCAGCTTCAGCTGGACAAATGGCCTGCGAACACTATTTGTATTCCAACGGCTGGgtatgggaacagtggctttaggtacactatggtttctaatggcacatctg #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACaggtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTAT---AGATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcacttaactcttcctccctcttgcagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCACTAGCTTTGCTAAGTCCAGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGTTCTCTACTGCCTTCTGTTTCTGTTTTTCTGGGTCTACAGTAGCTGTATA---GATTCCCACAGgtgagtgtccatgagaaatgagaaatactttggagagattatcaatatat #### Tmem180_ID9862_4 --> 1 - 0 Original Alignment cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from CESAR cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Spaln_aa2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Spaln_nt2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Pairagon CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Exonerate_protein2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Exonerate_coding2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from GeneWise CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga #### Tmem180_ID9864_6 --> 2 - 2 Original Alignment gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcaggcATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCaggtgagaccaacctggtcttgatcctgtacctctatagccacttattctct Alignment from CESAR gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcaggcATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCaggtgagaccaacctggtcttgatcctgtacctctatagccacttattcaag Alignment from Spaln_aa2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtgagaccaacctggtcttgatcctgtacctctatagccacttattctct Alignment from Spaln_nt2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCC---------------CCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtgagaccaacctggtcttgatcctgtacctctatagccacttattctct Alignment from Pairagon GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCG---------------CTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtgagaccaacctggtcttgatcctgtacctctatagccacttattctct Alignment from Exonerate_protein2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtgagaccaacctggtcttgatcctgtacctctatagccacttattctct Alignment from Exonerate_coding2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtgagaccaacctggtcttgatcctgtacctctatagccacttattctct Alignment from GeneWise GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgaggtttaaacattcctcaagtttggatctctgttcactttcagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTGTGCCGACGGCCCCTGTGCCGACACTGGGGTATCTATGCAGTGGTACGAGGGCTTTTCTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCCGGGCCAGACCATCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtgagaccaacctggtcttgatcctgtacctctatagccacttattctct #### Tmem2_ID4950_11 --> 0 - 2 Original Alignment GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAag gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccagGCAGGTTTGTTTGTAGATAAAGGTGTGAAAACAACCAATGCCTCAGCATCTGATCCAAGAGAGTATCTTTGTCTGGATAACAGCGCAaggtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga Alignment from CESAR GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAag gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccagGCAGGTTTGTTTGTAGATAAAGGTGTGAAAACAACCAATGCCTCAGCATCTGATCCAAGAGAGTATCTTTGTCTGGATAACAGCGCAaggtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga Alignment from Spaln_aa2Genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccagGCAGGTTTGTTTGTAGATAAAGGTGTGAAAACAACCAATGCCTCAGCATCTGATCCAAGAGAGTATCTTTGTCTGGATAACAGCGCAAGgtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga Alignment from Spaln_nt2Genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccagGCAGGTTTGTTTGTAGATAAAGGTGTGAAAACAACCAATGCCTCAGCATCTGATCCAAGAGAGTATCTTTGTCTGGATAACAGCGCAAGgtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga Alignment from Pairagon GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccagGCAGGTTTGTTTGTAGATAAAGGTGTGAAAACAACCAATGCCTCAGCATCTGATCCAAGAGAGTATCTTTGTCTGGATAACAGCGCAAGgtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga Alignment from Exonerate_protein2genome GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccagGCAGGTTTGTTTGTAGATAAAGGTGTGAAAACAACCAATGCCTCAGCATCTGATCCAAGAGAGTATCTTTGTCTGGATAACAGCGCAAGgtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga Alignment from Exonerate_coding2genome gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccaggcaggtttgtttgtagataaaggtgtgaaaacaaccaatgcctcagcatctgatccaagagagtatctttgtctggataacagcgcaaggtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga Alignment from GeneWise GCTGGTTTATTTGTGGACAAAGGTGTCAAAACGACCAACGCCAGTGCATCTGACCCAAGGGAGTACCTCTGCCTGGATAACAGTGCAAG gcattggacaaatctgtcttgctttgtgtcccttgctgtgccccctccagGCAGGTTTGTTTGTAGATAAAGGTGTGAAAACAACCAATGCCTCAGCATCTGATCCAAGAGAGTATCTTTGTCTGGATAACAGCGCAAGgtgagggtttttgaatgttctcattcgtatctttgctagcctttgggaga #### Tmem2_ID4953_14 --> 1 - 2 Original Alignment tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagtGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta Alignment from CESAR tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagtGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta Alignment from Spaln_aa2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta Alignment from Spaln_nt2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta Alignment from Pairagon TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta Alignment from Exonerate_protein2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta Alignment from Exonerate_coding2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta Alignment from GeneWise TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctactacttttgaaaacttgcctggtcctggtgtcccacacagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGGAGGTCAAAACAAGTACATGGGCTCAGGGGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtgggttggatgtgggtagtggggtagtcaacccgcatggcttttctgta #### Tmem2_ID4955_16 --> 0 - 0 Original Alignment GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg Alignment from CESAR GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg Alignment from Spaln_aa2Genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg Alignment from Spaln_nt2Genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg Alignment from Pairagon GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg Alignment from Exonerate_protein2genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg Alignment from Exonerate_coding2genome GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg Alignment from GeneWise GTCTCTCTGAACGTCTTCTTTGGAAAGCCTGGCCCCTGGTTTGAGGATTGTGAGCTGGACGGCGATAAGAACTCCATCTTCCATGACATTGATGGCTCTGTGACAGGATACAAGGACACCTATGTGGGAAGGATGGACAACTACCTGATCCGCCATCCAAACTGTGTCAATGTTACTAAGTGGAATGCAGTGATCTGTAGCGGGACCTACGCCCAG gatggtaagtgagcttatcagacaacatttgaaccctcttgttaccgtagGTCTCTCTGAACATCTTCTTCGGAAAGCCTGGCCCCTGGTTTGAACATTGTGAGCTGGACAGCGATAAGAACTCCATCTTCCATGACATTGATGGTTCTGTGACAGGATACAGGGATACCTATGTGGGAAGGATGGACAACTACCTGATCTACCATCCAAACTGTGTCAATGTTACCAAGTGGAATACTGTGATTTGTAGTGGGAGATATGCCCAGgtaagtgagccagatggtccaagcccactgctcctcatgatgatggtctg #### Tmem2_ID4959_18 --> 1 - 2 Original Alignment gGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAgg gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcaggGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAgggtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc Alignment from CESAR gGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAgg gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcaggGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAgggtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc Alignment from Spaln_aa2Genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcagGGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAGGgtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc Alignment from Spaln_nt2Genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcagGGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAGGgtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc Alignment from Pairagon GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcagGGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAGGgtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc Alignment from Exonerate_protein2genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcagGGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAGGgtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc Alignment from Exonerate_coding2genome GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcagGGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAGGgtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc Alignment from GeneWise GGATGACTGGATCCGGGTTGGCCTCTGTTACCCAGCCAACACGAGCTTTCAGGTTACCGTTGGCTTTCTGCAGCGGCAGAACGGCTCATTATCTAGAATTGAGGACTATGAGCCTGCGCGGTCGATGGAGGAACTGCAGAAGAAGCCGTCTGAGAGAAAATTCTATTTTGACTCTGGCACAGG gatagccatgcttacactgagtcagaacctccctgtccaacctcttgcagGGATGAATGGATCCGAGTTGGGCTCTGTTACCCAGCCAACACCAGCTTCCAGGTTACTGTTGGATTTCTGCAGCGGCAGAATGGCTCGTTGTCCAGTATTGAGGACTACGAGCCTGCACGGTCAATGGAAGAACTTCAGAAGAAGCCATCTGAGAGAAAGTCCTATTTTGATTCTGGCACAGGgtattgcattaaaacaagcttcatagaaatcagatccctccaattgatcc #### Tmem2_ID4964_21 --> 0 - 2 Original Alignment GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAaggtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt Alignment from CESAR GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAaggtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt Alignment from Spaln_aa2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt Alignment from Spaln_nt2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt Alignment from Pairagon GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt Alignment from Exonerate_protein2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt Alignment from Exonerate_coding2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt Alignment from GeneWise GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG gtgatgtcaatagatatgacatggtttgtgggtttggttttttttgtcagGTCAATGGTACTGACTTTACCTCCCGCAGTGCAGGAGCCCTCCTTCTCATTGTGGATGTGTGCAGTGTACCCTCCCGCGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATATTTTAAGGCTCATATCCCCCCAAGgtgaggctgcttgccccctggaggaggagcttataatcagaagtgtactt #### Tnks2_ID7181_2 --> 2 - 1 Original Alignment gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttaggcTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTggtatgactatattttttagattttctgcaagctgtaagtatcctgagatg Alignment from CESAR gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttaggcTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTggtatgactatattttttagattttctgcaagctgtaagtatcctgagatg Alignment from Spaln_aa2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtatgactatattttttagattttctgcaagctgtaagtatcctgagatg Alignment from Spaln_nt2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtatgactatattttttagattttctgcaagctgtaagtatcctgagatg Alignment from Pairagon GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtatgactatattttttagattttctgcaagctgtaagtatcctgagatg Alignment from Exonerate_protein2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtatgactatattttttagattttctgcaagctgtaagtatcctgagatg Alignment from Exonerate_coding2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtatgactatattttttagattttctgcaagctgtaagtatcctgagatg Alignment from GeneWise GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttcttcacattgtgataatcatctcgcctgtcttgtgctctcttagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGCGCAAATGTCCAAACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTGGTTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCATGAAGCTGCAATAAAAGGCAAAATTGATGTGTGCATTGgtatgactatattttttagattttctgcaagctgtaagtatcctgagatg #### Tnks2_ID7183_4 --> 2 - 2 Original Alignment gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcaggtGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCaggtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat Alignment from CESAR gtGACTATAAGAAAGATGAACTTCTGGAAAGTGCCag ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcaggtGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCaggtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat Alignment from Spaln_aa2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcagGTGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCAGgtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat Alignment from Spaln_nt2Genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcagGTGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCAGgtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat Alignment from Pairagon GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcagGTGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCAGgtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat Alignment from Exonerate_protein2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcagGTGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCAGgtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat Alignment from Exonerate_coding2genome GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcagGTGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCAGgtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat Alignment from GeneWise GTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAG ggatttactgtccaaaaggttctaagcatctctcctgtgttctgcttcagGTGACTATAAAAAAGATGAGCTTCTTGAAAGTGCCAGgtaccaatttatgtaacatctacacagtctgaagacctggcagtggcaat #### Tnks2_ID7184_5 --> 1 - 0 Original Alignment gAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacaggAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt Alignment from CESAR gAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacaggAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt Alignment from Spaln_aa2Genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacagGAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt Alignment from Spaln_nt2Genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacagGAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt Alignment from Pairagon GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacagGAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt Alignment from Exonerate_protein2genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacagGAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt Alignment from Exonerate_coding2genome GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacagGAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt Alignment from GeneWise GAGTGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGAAAG ggtaatattagacagaaattgtgaataatcacctatgtgtatttttacagGAGCGGGAACGAAGAGAAGATGATGGCTTTACTTACACCATTGAATGTCAACTGCCATGCGAGTGAAGGCAGAAAGgtaagtccacaacactgctttaagatcatcactgtgtaagtttagacctt #### Tnks2_ID7188_9 --> 2 - 0 Original Alignment atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagatGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg Alignment from CESAR atGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagatGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg Alignment from Spaln_aa2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg Alignment from Spaln_nt2Genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACA------TCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg Alignment from Pairagon ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACA------TCTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg Alignment from Exonerate_protein2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg Alignment from Exonerate_coding2genome ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg Alignment from GeneWise ATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT------CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTG gttactatttgcaggataccaacatgtattgacctatgagaaccttacagATGAATTTAAGGGACATTCACTTCTACAAGCTGCACGGGAGACAGGTGTTACAAGAATCAAAAAACAGAAATGTCTGCCATTGGAAATGGTCAATTTCAAGCATCCTCAGACACATGAAACAGCACTGgtgagctttcatacatgagccattaaaatacatattgtaccctgcagttg #### Tnks2_ID7190_11 --> 1 - 0 Original Alignment aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagaTTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca Alignment from CESAR aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagaTTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca Alignment from Spaln_aa2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca Alignment from Spaln_nt2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca Alignment from Pairagon ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca Alignment from Exonerate_protein2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca Alignment from Exonerate_coding2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca Alignment from GeneWise ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG cgtgttttttctccacacaaataataccaaccaacactcctgtctcatagATTCTTGACACCTCTGCATGTGGCTTCTGAGAATGCTCATAATGACATTGTTGAAGTAGTCGTGAAACATGAAGCGAAGgtattccccatttccgacttctgagcatttagtcgggtaatatttgttca #### Tnks2_ID7191_12 --> 0 - 1 Original Alignment GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAg catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAggtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat Alignment from CESAR GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAg catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAggtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat Alignment from Spaln_aa2Genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAGgtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat Alignment from Spaln_nt2Genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAGgtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat Alignment from Pairagon GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAGgtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat Alignment from Exonerate_protein2genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAGgtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat Alignment from Exonerate_coding2genome GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAGgtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat Alignment from GeneWise GTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTGGTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTTCACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAG catacttattggaatcaggggatgtaccccatactaattcccttcatcagGTTAATGTCTTTGATAGTCTTGGACAGACTTCATTACACAGGGCTGCGCACTGTGGGCACCCACAGACCTGCTGTTTGCTCCTGAGCTACGGGTGTGATCCAAATATCATCTGCCTTAAAGGTTTCACCACCTTGCAAATGGGTAATGAGAATGTGCAGCAGTTGCTGCAAGgtaactccagcttgtgtgacctgaagcaaaggccccaagaccaatgacat #### Tnks2_ID7197_18 --> 0 - 0 Original Alignment CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc Alignment from CESAR CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc Alignment from Spaln_aa2Genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc Alignment from Spaln_nt2Genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc Alignment from Pairagon CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc Alignment from Exonerate_protein2genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc Alignment from Exonerate_coding2genome CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc Alignment from GeneWise CATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCACACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGATCCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCA ttcatatggtactaccaaatgtaagcagtctctgcctcttgctcttgcagCATGTAGATGTTGCAGCATTGCTGATCAAATATAATGCATGTGTCAATGCCACAGACAAATGGGCTTTTATACCATTACATGAGGCAGCCCGCAAAGGATGGACACAGCTCTGTGCTTTATTTTTGGCCCATGGAGCTGACCCCACTCTAAAAAACCAGGAAGGACAAACAGCTTTAGATTTAGTTTCAgtaattgccctttttaaattcctagcatggtgtgccctcatatcaggctc #### Tnks2_ID7199_20 --> 2 - 0 Original Alignment atTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagatTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga Alignment from CESAR atTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagatTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga Alignment from Spaln_aa2Genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagATTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga Alignment from Spaln_nt2Genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagATTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga Alignment from Pairagon ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagATTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga Alignment from Exonerate_protein2genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagATTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga Alignment from Exonerate_coding2genome ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagATTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga Alignment from GeneWise ATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAGAGAGAACAG tgtggtacattgacatcttccctgtgagcactgatcattccctctctcagATTCAGGAATTGATTTTAGTATAACTCAGTTTATAAGGAACCTTGGACTTGAGCACTTGATGGATATATTTGAAAGAGAACAGgttggggtgtgaactttctgatttgatttagtgtctagtattctagtgga #### Tnks2_ID7200_21 --> 0 - 1 Original Alignment ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAg gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAggtgagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from CESAR ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAg gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAggtgagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Spaln_aa2Genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtgagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Spaln_nt2Genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtgagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Pairagon ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtgagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Exonerate_protein2genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtgagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from Exonerate_coding2genome ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtgagatacattataagatggtagtaaattcatccatgatttatgagaag Alignment from GeneWise ATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAG gttataacttcatcatctttatgccaaacctcctgcttgtatctttgcagATTACCTTAGATGTCTTAGTCGAAATGGGCCACAAGGAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGATCTCTGGACAACAAGgtgagatacattataagatggtagtaaattcatccatgatttatgagaag #### Tnks2_ID7204_25 --> 2 - 2 Original Alignment ggTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACag tagctgattttgtcttttctgaattgttacattttcttgtttcattttagggTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACaggtaagggataactaggtaatttaagcatcaaccaatacatttctagggct Alignment from CESAR ggTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACag tagctgattttgtcttttctgaattgttacattttcttgtttcattttagggTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACaggtaagggataactaggtaatttaagcatcaaccaatacatttctagggct Alignment from Spaln_aa2Genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tagctgattttgtcttttctgaattgttacattttcttgtttcattttagGGTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACAGgtaagggataactaggtaatttaagcatcaaccaatacatttctagggct Alignment from Spaln_nt2Genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tagctgattttgtcttttctgaattgttacattttcttgtttcattttagGGTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACAGgtaagggataactaggtaatttaagcatcaaccaatacatttctagggct Alignment from Pairagon GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tagctgattttgtcttttctgaattgttacattttcttgtttcattttagGGTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACAGgtaagggataactaggtaatttaagcatcaaccaatacatttctagggct Alignment from Exonerate_protein2genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tagctgattttgtcttttctgaattgttacattttcttgtttcattttagGGTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACAGgtaagggataactaggtaatttaagcatcaaccaatacatttctagggct Alignment from Exonerate_coding2genome GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tagctgattttgtcttttctgaattgttacattttcttgtttcattttagGGTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACAGgtaagggataactaggtaatttaagcatcaaccaatacatttctagggct Alignment from GeneWise GGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATACATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATGGAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAG tagctgattttgtcttttctgaattgttacattttcttgtttcattttagGGTCTCCTTTTGTAACTGCCATTATCCACAAGGGCTTTGATGAAAGGCATGCATATGTGGGTGGCATGTTTGGGGCTGGAATTTACTTTGCTGAGAACTCCTCTAAGAGCAATCAATATGCGTATGGAATTGGGGGTGGCACTGGATGTCCTATTCACAAAGACAGATCTTGTTACATCTGTCACAGgtaagggataactaggtaatttaagcatcaaccaatacatttctagggct #### Trpm3_ID5035_2 --> 0 - 2 Original Alignment GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag gatagatcttttatgttcctttgcttttttcctgatacccccactcttagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATaggtgagtccgacagagttttgctatcacaattaaataataggcaacatgaa Alignment from CESAR GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATag gatagatcttttatgttcctttgcttttttcctgatacccccactcttagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATaggtgagtccgacagagttttgctatcacaattaaataataggcaacatgaa Alignment from Spaln_aa2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gatagatcttttatgttcctttgcttttttcctgatacccccactcttagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgagtccgacagagttttgctatcacaattaaataataggcaacatgaa Alignment from Spaln_nt2Genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gatagatcttttatgttcctttgcttttttcctgatacccccactcttagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgagtccgacagagttttgctatcacaattaaataataggcaacatgaa Alignment from Pairagon GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gatagatcttttatgttcctttgcttttttcctgatacccccactcttagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgagtccgacagagttttgctatcacaattaaataataggcaacatgaa Alignment from Exonerate_protein2genome GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gatagatcttttatgttcctttgcttttttcctgatacccccactcttagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgagtccgacagagttttgctatcacaattaaataataggcaacatgaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTCAGAAATCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAG gatagatcttttatgttcctttgcttttttcctgatacccccactcttagGCTCAGAAATCCTGGATTGAAAGAGCGTTTTATAAAAGAGAATGTGTTCACATCATACCAAGCACCAAAGAACCCCATAGgtgagtccgacagagttttgctatcacaattaaataataggcaacatgaa #### Trpm3_ID5036_3 --> 1 - 0 Original Alignment gTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagttatggcagaccaaagtacccactaaacaggttcttcttacaggTGTTGC------------TTAGGCCAGTGTGTTGGACTCACACCTAGTATTTCAGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAATCAGAGGAATGGGCCATCAGTAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATTGTTGAATTCGAAGGGGGTGGTCATTCTAACAAAGCCATGgtaggccaaaagggtaatttgaagacacctggagcatcttctccaagcag Alignment from CESAR gTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagttatggcagaccaaagtacccactaaacaggttcttcttacaggTGTTGC------------TTAGGCCAGTGTGTTGGACTCACACCTAGTATTTCAGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAATCAGAGGAATGGGCCATCAGTAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATTGTTGAATTCGAAGGGGGTGGTCATTCTAACAAAGCCATGgtaggccaaaagggtaatttgaagacacctggagcatcttctccaagcag Alignment from Spaln_aa2Genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagttatggcagaccaaagtacccactaaacaggttcttcttacagGTGTTGC------------TTAGGCCAGTGTGTTGGACTCACACCTAGTATTTCAGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAATCAGAGGAATGGGCCATCAGTAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATTGTTGAATTCGAAGGGGGTGGTCATTCTAACAAAGCCATGgtaggccaaaagggtaatttgaagacacctggagcatcttctccaagcag Alignment from Spaln_nt2Genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagttatggcagaccaaagtacccactaaacaggttcttcttacagGTGTTGCT------------TAGGCCAGTGTGTTGGACTCACACCTAGTATTTCAGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAATCAGAGGAATGGGCCATCAGTAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATTGTTGAATTCGAAGGGGGTGGTCATTCTAACAAAGCCATGgtaggccaaaagggtaatttgaagacacctggagcatcttctccaagcag Alignment from Pairagon GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagttatggcagaccaaagtacccactaaacaggttcttcttacagGTGTTGCT------------TAGGCCAGTGTGTTGGACTCACACCTAGTATTTCAGTACTTCAGAATGAGAAAAATGAAAGTCG---CTCCCGAAATGACATACAATCAGAGGAATGGGCCATCAGTAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATTGTTGAATTCGAAGGGGGTGGTCATTCTAACAAAGCCATGgtaggccaaaagggtaatttgaagacacctggagcatcttctccaagcag Alignment from Exonerate_protein2genome GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagttatggcagaccaaagtacccactaaacaggttcttcttacagGTGTTGC------------TTAGGCCAGTGTGTTGGACTCACACCTAGTATTTCAGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAATCAGAGGAATGGGCCATCAGTAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATTGTTGAATTCGAAGGGGGTGGTCATTCTAACAAAGCCATGgtaggccaaaagggtaatttgaagacacctggagcatcttctccaagcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTTGCTGTGGACGCCTCATAGGCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGGACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATG ataatagttatggcagaccaaagtacccactaaacaggttcttcttacagGTGTTGC------------TTAGGCCAGTGTGTTGGACTCACACCTAGTATTTCAGTACTTCAGAATGAGAAAAATGAAAGTCGC---TCCCGAAATGACATACAATCAGAGGAATGGGCCATCAGTAAGCACGCTCCACTTAGCCCAACAGATGCCTTTGGGATTGTTGAATTCGAAGGGGGTGGTCATTCTAACAAAGCCATGgtaggccaaaagggtaatttgaagacacctggagcatcttctccaagcag #### Trpm3_ID5054_10 --> 2 - 0 Original Alignment gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgattatcattttgtaaacaagtgtattccaaccaggtGCTAATCCGTCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtaagttaggaatcctaaggtattaccggttacaggtaatcaaataggct Alignment from CESAR gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgattatcattttgtaaacaagtgtattccaaccaggtGCTAATCCGTCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtaagttaggaatcctaaggtattaccggttacaggtaatcaaataggct Alignment from Spaln_aa2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgattatcattttgtaaacaagtgtattccaaccagGTGCTAATCCGTCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtaagttaggaatcctaaggtattaccggttacaggtaatcaaataggct Alignment from Spaln_nt2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgattatcattttgtaaacaagtgtattccaaccagGTGCTAATCCGTCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtaagttaggaatcctaaggtattaccggttacaggtaatcaaataggct Alignment from Pairagon GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgattatcattttgtaaacaagtgtattccaaccagGTGCTAATCCGTCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtaagttaggaatcctaaggtattaccggttacaggtaatcaaataggct Alignment from Exonerate_protein2genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgattatcattttgtaaacaagtgtattccaaccagGTGCTAATCCGTCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtaagttaggaatcctaaggtattaccggttacaggtaatcaaataggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgattatcattttgtaaacaagtgtattccaaccagGTGCTAATCCGTCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtaagttaggaatcctaaggtattaccggttacaggtaatcaaataggct #### Trpm3_ID5055_11 --> 0 - 0 Original Alignment GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtatttttcttgaatgggcagacttttgtctaatatattttaacagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaatgctagccagtgaaagtgcctttgtgttatggctggttctctcagt Alignment from CESAR GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtatttttcttgaatgggcagacttttgtctaatatattttaacagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaatgctagccagtgaaagtgcctttgtgttatggctggttctctcagt Alignment from Spaln_aa2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtatttttcttgaatgggcagacttttgtctaatatattttaacagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaatgctagccagtgaaagtgcctttgtgttatggctggttctctcagt Alignment from Spaln_nt2Genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtatttttcttgaatgggcagacttttgtctaatatattttaacagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaatgctagccagtgaaagtgcctttgtgttatggctggttctctcagt Alignment from Pairagon GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtatttttcttgaatgggcagacttttgtctaatatattttaacagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaatgctagccagtgaaagtgcctttgtgttatggctggttctctcagt Alignment from Exonerate_protein2genome GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtatttttcttgaatgggcagacttttgtctaatatattttaacagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaatgctagccagtgaaagtgcctttgtgttatggctggttctctcagt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACG cacagtatttttcttgaatgggcagacttttgtctaatatattttaacagGTAGGGTCCCTGGAGCAAGCCATGCTGGATGCCCTAGTCCTTGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAGTAAGCATGCACCGTTTTCTCACAATCTCCAGACTAGAGGAACTTTACAATACAgtaatgctagccagtgaaagtgcctttgtgttatggctggttctctcagt #### Trpm3_ID5056_12 --> 0 - 0 Original Alignment AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG aacattctcacaactcatctcctagaacatgcagtggacatcttgtctagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtaagtattcttggaactatggctcagaagagttgtcagatgctcagaag Alignment from CESAR AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG aacattctcacaactcatctcctagaacatgcagtggacatcttgtctagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtaagtattcttggaactatggctcagaagagttgtcagatgctcagaag Alignment from Spaln_aa2Genome AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG aacattctcacaactcatctcctagaacatgcagtggacatcttgtctagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtaagtattcttggaactatggctcagaagagttgtcagatgctcagaag Alignment from Spaln_nt2Genome AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG aacattctcacaactcatctcctagaacatgcagtggacatcttgtctagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtaagtattcttggaactatggctcagaagagttgtcagatgctcagaag Alignment from Pairagon AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG aacattctcacaactcatctcctagaacatgcagtggacatcttgtctagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtaagtattcttggaactatggctcagaagagttgtcagatgctcagaag Alignment from Exonerate_protein2genome AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG aacattctcacaactcatctcctagaacatgcagtggacatcttgtctagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtaagtattcttggaactatggctcagaagagttgtcagatgctcagaag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAG aacattctcacaactcatctcctagaacatgcagtggacatcttgtctagAGACATGGGCCCTCAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGgtaagtattcttggaactatggctcagaagagttgtcagatgctcagaag #### Trpm3_ID5063_18 --> 0 - 0 Original Alignment GCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACT atccactccctgacaccaactagtatggctgaccctcagatgccccacagGCAATGTTGGGGCGAAGCAATGGGGAATCGTCAAGAAAGAAGGATGAAGAGGAAGTCCAAAGCAGGCACCGGCTAATCCCTGTGGGCCGAAAAATATATGAGTTCTACAATGCACCCACTGTGAAATTTTGGTTCTACACTgtagagtctttcccttatccctctgtggcaccagtcctggtcatccaggc Alignment from CESAR GCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACT atccactccctgacaccaactagtatggctgaccctcagatgccccacagGCAATGTTGGGGCGAAGCAATGGGGAATCGTCAAGAAAGAAGGATGAAGAGGAAGTCCAAAGCAGGCACCGGCTAATCCCTGTGGGCCGAAAAATATATGAGTTCTACAATGCACCCACTGTGAAATTTTGGTTCTACACTgtagagtctttcccttatccctctgtggcaccagtcctggtcatccaggc Alignment from Spaln_aa2Genome GCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACT atccactccctgacaccaactagtatggctgaccctcagatgccccacagGCAATGTTGGGGCGAAGCAATGGGGAATCGTCAAGAAAGAAGGATGAAGAGGAAGTCCAAAGCAGGCACCGGCTAATCCCTGTGGGCCGAAAAATATATGAGTTCTACAATGCACCCACTGTGAAATTTTGGTTCTACACTgtagagtctttcccttatccctctgtggcaccagtcctggtcatccaggc Alignment from Spaln_nt2Genome GCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACT atccactccctgacaccaactagtatggctgaccctcagatgccccacagGCAATGTTGGGGCGAAGCAATGGGGAATCGTCAAGAAAGAAGGATGAAGAGGAAGTCCAAAGCAGGCACCGGCTAATCCCTGTGGGCCGAAAAATATATGAGTTCTACAATGCACCCACTGTGAAATTTTGGTTCTACACTgtagagtctttcccttatccctctgtggcaccagtcctggtcatccaggc Alignment from Pairagon GCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACT atccactccctgacaccaactagtatggctgaccctcagatgccccacagGCAATGTTGGGGCGAAGCAATGGGGAATCGTCAAGAAAGAAGGATGAAGAGGAAGTCCAAAGCAGGCACCGGCTAATCCCTGTGGGCCGAAAAATATATGAGTTCTACAATGCACCCACTGTGAAATTTTGGTTCTACACTgtagagtctttcccttatccctctgtggcaccagtcctggtcatccaggc Alignment from Exonerate_protein2genome GCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACT atccactccctgacaccaactagtatggctgaccctcagatgccccacagGCAATGTTGGGGCGAAGCAATGGGGAATCGTCAAGAAAGAAGGATGAAGAGGAAGTCCAAAGCAGGCACCGGCTAATCCCTGTGGGCCGAAAAATATATGAGTTCTACAATGCACCCACTGTGAAATTTTGGTTCTACACTgtagagtctttcccttatccctctgtggcaccagtcctggtcatccaggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCAATGTTGGGGCGAAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACT atccactccctgacaccaactagtatggctgaccctcagatgccccacagGCAATGTTGGGGCGAAGCAATGGGGAATCGTCAAGAAAGAAGGATGAAGAGGAAGTCCAAAGCAGGCACCGGCTAATCCCTGTGGGCCGAAAAATATATGAGTTCTACAATGCACCCACTGTGAAATTTTGGTTCTACACTgtagagtctttcccttatccctctgtggcaccagtcctggtcatccaggc #### Trpm3_ID5078_22 --> 2 - 2 Original Alignment ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa atacattaattttactacataatcattctaacccaggctgttccttctagctCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAGGACAATTCAACTGCCTTCATGCAAAACAGGGGCATGGATTGTGGCAGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTCCTCATTGCTGTCTTCaagtaggagtcaggtgattggatcgttgcagccatctggttgattacttctt Alignment from CESAR ctCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCaa atacattaattttactacataatcattctaacccaggctgttccttctagctCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAGGACAATTCAACTGCCTTCATGCAAAACAGGGGCATGGATTGTGGCAGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTCCTCATTGCTGTCTTCaagtaggagtcaggtgattggatcgttgcagccatctggttgattacttctt Alignment from Spaln_aa2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA atacattaattttactacataatcattctaacccaggctgttccttctagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAGGACAATTCAACTGCCTTCATGCAAAACAGGGGCATGGATTGTGGCAGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTCCTCATTGCTGTCTTCAAgtaggagtcaggtgattggatcgttgcagccatctggttgattacttctt Alignment from Spaln_nt2Genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA atacattaattttactacataatcattctaacccaggctgttccttctagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAGGACAATTCAACTGCCTTCATGCAAAACAGGGGCATGGATTGTGGCAGCCATTAT------TTACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTCCTCATTGCTGTCTTCAAgtaggagtcaggtgattggatcgttgcagccatctggttgattacttctt Alignment from Pairagon CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA atacattaattttactacataatcattctaacccaggctgttccttctagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAGGACAATTCAACTGCCTTCATGCAAAACAGGGGCATGGATTGTGGCAGCCATTAT------TTACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTCCTCATTGCTGTCTTCAAgtaggagtcaggtgattggatcgttgcagccatctggttgattacttctt Alignment from Exonerate_protein2genome CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA atacattaattttactacataatcattctaacccaggctgttccttctagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAGGACAATTCAACTGCCTTCATGCAAAACAGGGGCATGGATTGTGGCAGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTCCTCATTGCTGTCTTCAAgtaggagtcaggtgattggatcgttgcagccatctggttgattacttctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGTGGACAGAATGAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCATCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAA atacattaattttactacataatcattctaacccaggctgttccttctagCTCCCTGTGGACAGAATGAAACCCGAGAGGATGGCAGGACAATTCAACTGCCTTCATGCAAAACAGGGGCATGGATTGTGGCAGCCATTATT------TACCTCTTAGTGGCAAACATTCTTCTTGTCAACCTCCTCATTGCTGTCTTCAAgtaggagtcaggtgattggatcgttgcagccatctggttgattacttctt #### Trpm3_ID5079_23 --> 1 - 1 Original Alignment cAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGa ccttgaataatctatacttgttggttcatgtcttgattttggtcctttagcAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGagtaagttgcaagcagtccaatagctccaataaccatccaggcaggatcca Alignment from CESAR cAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGa ccttgaataatctatacttgttggttcatgtcttgattttggtcctttagcAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGagtaagttgcaagcagtccaatagctccaataaccatccaggcaggatcca Alignment from Spaln_aa2Genome CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcatgtcttgattttggtcctttagCAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttgcaagcagtccaatagctccaataaccatccaggcaggatcca Alignment from Spaln_nt2Genome CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcatgtcttgattttggtcctttagCAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttgcaagcagtccaatagctccaataaccatccaggcaggatcca Alignment from Pairagon CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcatgtcttgattttggtcctttagCAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttgcaagcagtccaatagctccaataaccatccaggcaggatcca Alignment from Exonerate_protein2genome CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcatgtcttgattttggtcctttagCAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttgcaagcagtccaatagctccaataaccatccaggcaggatcca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcatgtcttgattttggtcctttagCAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttgcaagcagtccaatagctccaataaccatccaggcaggatcca #### Trpm3_ID5080_24 --> 2 - 2 Original Alignment aaCTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAag tctttttgccccctcctttgtcttaaatttcctgttttcttcccggccagaaCTATTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGACCGCTTCAATTCATCCAATGATGAGAGGATACGAGTCACCTCAGAGaagtatgtgacttgaagatgttaatgctgctatttcaatgtatacccatgta Alignment from CESAR aaCTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAag tctttttgccccctcctttgtcttaaatttcctgttttcttcccggccagaaCTATTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGACCGCTTCAATTCATCCAATGATGAGAGGATACGAGTCACCTCAGAGaagtatgtgacttgaagatgttaatgctgctatttcaatgtatacccatgta Alignment from Spaln_aa2Genome AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctcctttgtcttaaatttcctgttttcttcccggccagAACTATTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGACCGCTTCAATTCATCCAATGATGAGAGGATACGAGTCACCTCAGAGAAgtatgtgacttgaagatgttaatgctgctatttcaatgtatacccatgta Alignment from Spaln_nt2Genome AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctcctttgtcttaaatttcctgttttcttcccggccagAACTATTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGACCGCTTCAATTCATCCAATGATGAGAGGATACGAGTCACCTCAGAGAAgtatgtgacttgaagatgttaatgctgctatttcaatgtatacccatgta Alignment from Pairagon AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctcctttgtcttaaatttcctgttttcttcccggccagAACTATTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGACCGCTTCAATTCATCCAATGATGAGAGGATACGAGTCACCTCAGAGAAgtatgtgacttgaagatgttaatgctgctatttcaatgtatacccatgta Alignment from Exonerate_protein2genome AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctcctttgtcttaaatttcctgttttcttcccggccagAACTATTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGACCGCTTCAATTCATCCAATGATGAGAGGATACGAGTCACCTCAGAGAAgtatgtgacttgaagatgttaatgctgctatttcaatgtatacccatgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACTCTTCATAACTGACGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGATCGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAG tctttttgccccctcctttgtcttaaatttcctgttttcttcccggccagAACTATTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAGTATTTCCGAGAGAAGGACGACCGCTTCAATTCATCCAATGATGAGAGGATACGAGTCACCTCAGAGAAgtatgtgacttgaagatgttaatgctgctatttcaatgtatacccatgta #### Trpm6_ID4478_15 --> 0 - 0 Original Alignment AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc Alignment from CESAR AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc Alignment from Spaln_aa2Genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc Alignment from Spaln_nt2Genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc Alignment from Pairagon AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc Alignment from Exonerate_protein2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc Alignment from Exonerate_coding2genome AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc Alignment from GeneWise AGTGTGAGCAGCTTTGCTCAGGGCCTCTCCCAGCACTCTCTTCATCAGAGACATTCACTGAGAAATAGAAAGGAGTCTTCTGAAAGCACACTGCACTCCCAGTTCTTCAGGACGGCCCAGCCCTACAAATCCAAG cttccacaccttttttcttttatctattacttgggttccttggcttgcagAGCGTAAGCAGCTTTGCTCAGGACCTCTCACAGCTCTCTCTCCATCGGAGACGTTCACTTAGAAATAGGGAAGAGTCCTCTGAAAGCACCCTCCACTCCCAGTTTTTCAGGACAGCCCAGCCTTACAAGTCCAAGgtaaggcccatagttgatattgttaacaataaacatggttctacagaatc #### Trpm6_ID4483_20 --> 0 - 0 Original Alignment ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa Alignment from CESAR ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa Alignment from Spaln_aa2Genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa Alignment from Spaln_nt2Genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa Alignment from Pairagon ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa Alignment from Exonerate_protein2genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa Alignment from Exonerate_coding2genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa Alignment from GeneWise ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG ggaatagtgttgataaatttggagactcggcatatgctatctcatttcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtaagtggggtgagctagtgatcagtggcaagttattaataaatgtaaaa #### Trpm6_ID4486_23 --> 2 - 2 Original Alignment ttTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCaa atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagttTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCaagtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt Alignment from CESAR ttTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCaa atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagttTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCaagtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt Alignment from Spaln_aa2Genome TTTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCAA atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagTTTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCAAgtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt Alignment from Spaln_nt2Genome TTTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCAA atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagTTTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCAAgtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt Alignment from Pairagon TTTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCAA atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagTTTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCAAgtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt Alignment from Exonerate_protein2genome TTTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCAA atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagTTTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCAAgtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt Alignment from Exonerate_coding2genome TTTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCAA atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagTTTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCAAgtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt Alignment from GeneWise TTTGTTCAAATGAGACTTCTTGCCCTCCGGGTTCTTTCCTGACTCCATTCCTGCAAGCTGTCTACCTCTTTGTGCAATACATCATCATGGTGAACCTTCTGATTGCCTGTTTCAA atccccagggctgccacaacttgcctcttcggtttcttcttccttcttagTTTGTTCAAATGAGACTTCTTGCCCTCCTGGATCTTTCCTAACACCATTCTTGCCGGCAGTTTACCTTTTCGTGCAATTCATTATCATGGTTAACCTTTTGATTGCGTGTTTCAAgtgagtaactttgacaaagcagaatatgttgttcccagaaagcctagcgt #### Trpm6_ID4495_30 --> 0 - 2 Original Alignment AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTct gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTctgtgagtaagatatttggttgtcacactccattttgttgaactaaaatata Alignment from CESAR AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTct gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTctgtgagtaagatatttggttgtcacactccattttgttgaactaaaatata Alignment from Spaln_aa2Genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtgagtaagatatttggttgtcacactccattttgttgaactaaaatata Alignment from Spaln_nt2Genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtgagtaagatatttggttgtcacactccattttgttgaactaaaatata Alignment from Pairagon AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtgagtaagatatttggttgtcacactccattttgttgaactaaaatata Alignment from Exonerate_protein2genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCT gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtgagtaagatatttggttgtcacactccattttgttgaactaaaatata Alignment from Exonerate_coding2genome AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTTCTAACA gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTGTGAgtaagatatttggttgtcacactccattttgttgaactaaaatata Alignment from GeneWise AACCGAGATAAAACCCCCACATGGAATTCTGGGAGCACCAGCCTCAGCAGGAGTTTT-- gaaaaaatatttgcagcacttgggttgcctttctcttttatggcctgcagAACCAAGTTAAAACCCCCACATGGAATTCTGGGAGCACCCGTCTCAGCAGGAGTTTTCTgtgagtaagatatttggttgtcacactccattttgttgaactaaaatata #### Trpm6_ID4504_34 --> 2 - 0 Original Alignment caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagctGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc Alignment from CESAR caGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagctGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc Alignment from Spaln_aa2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagCTGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc Alignment from Spaln_nt2Genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagCTGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc Alignment from Pairagon CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagCTGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc Alignment from Exonerate_protein2genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagCTGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc Alignment from Exonerate_coding2genome CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagCTGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc Alignment from GeneWise CAGGAGAGGAAGTGACCATCTACAAGCTTGAAGAAAGTTCTCCTCTGACCCTGGATAAGAGCATGTCCTCTTGGTCGCAGCATGGCAGAGCTGCCATGATTCAGGTGCTGTCACAAGAGGAAATGGATGGGGGTCTCCGCAAAGCCATGCGAGTTATCAGCACCTGGTCTGAGGATGATGTTCTCAAGCCTGGGCAGGTTTTCATTGTGAAGTCTTTTCTCCCCGAGGTTGTGCAGACGTGGTATAAAATCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTTAGG ttgatcttgtgcatcattgaggtatcatcccatgaaatctctttttccagCTGGTGAGGAAGTAACTATCTACAATCTTGAAGACAGCTCCCCCCTGACTCTTGATAAGAGCATATCCTCCTGGCTACAGGACAGTAGAGCGGCTATGATTCGGGTGCTGTCACAGGAAGAAATGGATGGGGGTCTACGCAAAGCCATGCGAGTCATCAGCACCTGGTCCGAGGATGATGTTCTTAAGCCTGGACAGGTTTTCATTGTAAAGTCTTTCCTGCCCGATGTTGTGCAGACATGGTATAAAATCTTTCAGGAAAGCACTGTGCTTCATCTTTGCCTTAGAgtgagtcaaaatcttggatcccaagaccttataaaagggaaccaagaccc #### Trpm6_ID4505_35 --> 0 - 2 Original Alignment GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAaggtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct Alignment from CESAR GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAag ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAaggtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct Alignment from Spaln_aa2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAAGgtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct Alignment from Spaln_nt2Genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAAGgtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct Alignment from Pairagon GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAAGgtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct Alignment from Exonerate_protein2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAAGgtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct Alignment from Exonerate_coding2genome GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAAGgtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct Alignment from GeneWise GAAATTCAACAGCAAAGAGCTGCCCAAAAACTCATCTATACCTTTAACCAAGTAAAACCACAAACCATTCCCTATACACCAAG ctgagatatgtactgccttgtgtcatttctgaaatcttctccttctgcagGAAATTCAACAGCAAAGAGCTGCCCAAAAACTTATCTATACCTTTAACCAAGTGAAACCGCAATCCATTCCCTATACACCAAGgtaagtaaagaattatattaaagtgcggctaatcattaagagtaattcct #### Trpm6_ID4510_37 --> 2 - 2 Original Alignment gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctaggtGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAAcagtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata Alignment from CESAR gtGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAAca tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctaggtGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAAcagtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata Alignment from Spaln_aa2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctagGTGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAACAgtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata Alignment from Spaln_nt2Genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctagGTGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAACAgtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata Alignment from Pairagon GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctagGTGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAACAgtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata Alignment from Exonerate_protein2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctagGTGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAACAgtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata Alignment from Exonerate_coding2genome GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctagGTGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAACAgtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata Alignment from GeneWise GTGTTGGAGAAAATTTGACAGATCCGTCTGTTATAAAACCGGAAGACAAACA tagagcatgaacacttccttgaaaagcatgactgcctgtctccgttctagGTGTTGGAGAAAATTTGACAGATCCATCGGTTATAAAGCCAGAAGACAAACAgtgagttagcttagcctattgtactgctagaagggtttgcaacatcaata #### Trub1_ID12383_3 --> 2 - 0 Original Alignment tgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagtaGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc Alignment from CESAR tgGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagtaGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc Alignment from Spaln_aa2Genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagTAGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc Alignment from Spaln_nt2Genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagTAGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc Alignment from Pairagon TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagTAGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc Alignment from Exonerate_protein2genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagTAGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc Alignment from Exonerate_coding2genome TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagTAGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc Alignment from GeneWise TGGTTGGGATTGGAAGAGGAACAAAAATGTTGACCAGTATGTTGTCGGGGTCCAAG ttatgtccgattttctctatgcaatgtttgtctccctcccatcttcctagTAGTTGGGATTGGGAGAGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGgtatgttagtgataatgtatctcttttttcatttgttgtccttctgcagc #### Trub1_ID12384_4 --> 0 - 1 Original Alignment AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagAGATACATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACAGGAAAGGTAACAAAAGAGAAACCATATggtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta Alignment from CESAR AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagAGATACATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACAGGAAAGGTAACAAAAGAGAAACCATATggtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta Alignment from Spaln_aa2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagAGATACATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACAGGAAAGGTAACAAAAGAGAAACCATATGgtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta Alignment from Spaln_nt2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagAGATACATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACAGGAAAGGTAACAAAAGAGAAACCATATGgtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta Alignment from Pairagon AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagAGATACATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACAGGAAAGGTAACAAAAGAGAAACCATATGgtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta Alignment from Exonerate_protein2genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagAGATACATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACAGGAAAGGTAACAAAAGAGAAACCATATGgtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta Alignment from Exonerate_coding2genome tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagagatacatcaccattggagaactgggtaaagccacagacaccttggatgctacaggaaaggtaacaaaagagaaaccatatggtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta Alignment from GeneWise AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tggttgcagaaaaaatgctcaccatcacttctgtttgtgccttttcttagAGATACATCACCATTGGAGAACTGGGTAAAGCCACAGACACCTTGGATGCTACAGGAAAGGTAACAAAAGAGAAACCATATGgtaccaagcctcagtgtataagaatctgttgcccagcccagctccctcta #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aggtggaacaaggtcggatcccccctccaatatttctcttacttcatcagACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aggtggaacaaggtcggatcccccctccaatatttctcttacttcatcagACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatcagACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct #### Tut1_ID2552_5 --> 0 - 2 Original Alignment CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACcg tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTCTGCG------TCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAGCT---CCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTGGT---TCATTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATcggtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg Alignment from CESAR CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACcg tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTCT------GCGTCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAGCT---CCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTGGTTCA---TTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATcggtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg Alignment from Spaln_aa2Genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTCT------GCGTCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAGCT---CCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTGGTTCA---TTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATCGgtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg Alignment from Spaln_nt2Genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTC------TGCGTCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAG---CTCCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTG---GTTCATTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATCGgtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg Alignment from Pairagon CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTC------TGCGTCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAG---CTCCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTGGTT---CATTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATCGgtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg Alignment from Exonerate_protein2genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTCT------GCGTCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAGCT---CCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTGGTTCA---TTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATCGgtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg Alignment from Exonerate_coding2genome CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTCT------GCGTCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAGCT---CCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTGGTTCA---TTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATCGgtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg Alignment from GeneWise CCAGACCCAAAGGCTCCAAAGGTTCCAGAGACTTCATCCTTGGACTCAGCCCTTGCTTCTTCCCTGGATCCTCAGGCGCTGGCCTGCACCCCAGCTTCTCCTCTAGACTCACTGTCTCCAACTTCTGTTCAAGAGTCTGAGTCCCTGGACTTTGACACCCCATCTTCTCTGGCACCACAGACACCCGACTCTGCTTTGGGCTCTGACACTGTCACCTCTCCTCAGTCTCTGCCTCCAGTTTCACCACTGCAGGAGGACAGGAAAGAGGGGAAACAGGGGAAAGAGCTAGAATTAGCAGAAGAAGCCTCAAAGGACGAGAAGGAGGAGGCAGCAGCAGTGTTAGAGCTGGTGGGATCTATTCTCCGTGGCTGTGTCCCTGGAGTGTACCGAGTCCAAACTGTGCCCTCTGCCCGGCGTCCTGTGGTCAAGTTCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTCAGTAACCG tggaagaaccatgaagctatgtcagggtctccccttggttctgacctcagCCAGACTCAAAGGCTCCAAAAGTCCCAAAGACTTCTTCCCTGGACTCTGCG------TCCTCCCTGGATCCACAGTCCCTGGCCTGCACCCCAGCT---CCTCTCGACTCTCTGCCTCCCACTTCAGTACAAGAATCTGGATCCTTGGACTTTGACACTCCATCTTCTCTGGCAGCACAGACACCTGGTTCA---TTGGGCTCTGACACTGTTACTTCACTTGAGTCTTTTCCTCCAGTCTCACCGCTGCAGGAGGACAGGAAGGAGGGAAAACAGGAGAAAAGGCTAGCAGTAGCAGAAGAGGCTTTAAAGGATGAGAAGGAGAAGACAGCAGCTGTGTTAGAGCTGGTGGGATCTATTCTTCGTGGCTGTATCCCTGGAGTGTACCGGGTTCAAACTGTCCCCTCTGCACGGTGTTCTGTAGTGAAATCCTGTCATCGGCCTTCAGGTCTTCATGGAGATGTATCCCTTAGCAATCGgtgagtttgcatgggactggaacctctgcagctgcagaagcttggaaacg #### Tut1_ID2555_8 --> 2 - 1 Original Alignment gtGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctagagtaactaggtccacactgatccttctttgtccttccttcaggtGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCagtaattctagggaacatattagtacataacaggtcaaagagtaggggaag Alignment from CESAR gtGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctagagtaactaggtccacactgatccttctttgtccttccttcaggtGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCagtaattctagggaacatattagtacataacaggtcaaagagtaggggaag Alignment from Spaln_aa2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaggtccacactgatccttctttgtccttccttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCAgtaattctagggaacatattagtacataacaggtcaaagagtaggggaag Alignment from Spaln_nt2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaggtccacactgatccttctttgtccttccttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCAgtaattctagggaacatattagtacataacaggtcaaagagtaggggaag Alignment from Pairagon GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaggtccacactgatccttctttgtccttccttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCAgtaattctagggaacatattagtacataacaggtcaaagagtaggggaag Alignment from Exonerate_protein2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaggtccacactgatccttctttgtccttccttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCAgtaattctagggaacatattagtacataacaggtcaaagagtaggggaag Alignment from Exonerate_coding2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaggtccacactgatccttctttgtccttccttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCAgtaattctagggaacatattagtacataacaggtcaaagagtaggggaag Alignment from GeneWise GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaggtccacactgatccttctttgtccttccttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCCAGTACCAATGTTGAGCCTCTCAgtaattctagggaacatattagtacataacaggtcaaagagtaggggaag #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAggtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAg ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAggtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCAGAGCAAGTTGGCCCTGAAG ggtgggtaataaggtgggccccagaatacctaacttccttctgtccacagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTTTTGGGGCGAAAACCCAAGCCCTCAGAGCAAGTTGGGCCTGAAGgtaaggattgggacacatcatggttgtgcaacttgaaaagggccctgaca #### Ubxn1_ID2440_4 --> 2 - 2 Original Alignment gcTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGag aagcctgtgatattatccaggcattaagactttcattctgatggtttcaggcTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGaggttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc Alignment from CESAR gcTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGag aagcctgtgatattatccaggcattaagactttcattctgatggtttcaggcTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGaggttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc Alignment from Spaln_aa2Genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG aagcctgtgatattatccaggcattaagactttcattctgatggtttcagGCTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGAGgttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc Alignment from Spaln_nt2Genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG aagcctgtgatattatccaggcattaagactttcattctgatggtttcagGCTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGAGgttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc Alignment from Pairagon GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG aagcctgtgatattatccaggcattaagactttcattctgatggtttcagGCTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGAGgttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc Alignment from Exonerate_protein2genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG aagcctgtgatattatccaggcattaagactttcattctgatggtttcagGCTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGAGgttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc Alignment from Exonerate_coding2genome GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG aagcctgtgatattatccaggcattaagactttcattctgatggtttcagGCTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGAGgttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc Alignment from GeneWise GCTCTGGGTCTGCTGCTGGAGAAAGCAGACCCATTTTGACTGAAGAGGAGAGACAAGAACAGACCAAGAG aagcctgtgatattatccaggcattaagactttcattctgatggtttcagGCTCTGGATCTGCTGCTGGAAAAAGCAGGCCAATCCTGACTGAGGAGGAAAGAAGAGAACAGACCAGGAGgttaatggcaagttaggttgatgggcctgctgtatatgttccattgtatc #### Uhrf2_ID6371_2 --> 0 - 0 Original Alignment TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg Alignment from CESAR TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg Alignment from Spaln_aa2Genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg Alignment from Spaln_nt2Genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg Alignment from Pairagon TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCAT---CAACAGCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg Alignment from Exonerate_protein2genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg Alignment from Exonerate_coding2genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg Alignment from GeneWise TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG gaatctgagattccctcccaaagataaatcaattgtgctttttgttacagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGCTGCTAGTTCGCCCAGACTCTAGTCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTATATAGGgtaaagggtccccaaagaaatcaattataaatttaaaggtcttttctctg #### Uhrf2_ID6377_8 --> 0 - 0 Original Alignment GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAA------TTTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg Alignment from CESAR GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAA------TTTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg Alignment from Spaln_aa2Genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAA------TTTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg Alignment from Spaln_nt2Genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAAT------TTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg Alignment from Pairagon GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAAT------TTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg Alignment from Exonerate_protein2genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAA------TTTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg Alignment from Exonerate_coding2genome GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAA------TTTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg Alignment from GeneWise GGAATGGCTTGTGTTGGTCGTACAAAAGAATGTACTATTGTCCCTTCAAATCATTATGGACCAATCCCTGGTATTCCTGTTGGATCAACTTGGAGATTCAGAGTTCAG cttttttggatactgtattccacagaaactcctacctcttctccccacagGGAATGGCTTGTGTTGGCCGCACAAAGGAA------TTTGTTGCCTTAAACCATTATGGACGGATGCCTGGTATTCCGGTTGGGTCAACTTGGAGATTAAGAGTCCAGgtaaacaaggtttggttacttagtagagtaaaattcatagaataaaattg #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTggtgaggatgacataataactctgcttgcactctttctctagaacttcaaa Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGg tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTggtgaggatgacataataactctgcttgcactctttctctagaacttcaaa Alignment from Spaln_aa2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTGgtgaggatgacataataactctgcttgcactctttctctagaacttcaaa Alignment from Spaln_nt2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTGgtgaggatgacataataactctgcttgcactctttctctagaacttcaaa Alignment from Pairagon TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTGgtgaggatgacataataactctgcttgcactctttctctagaacttcaaa Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTGgtgaggatgacataataactctgcttgcactctttctctagaacttcaaa Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTGgtgaggatgacataataactctgcttgcactctttctctagaacttcaaa Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG tctttgagttttgatggggagccaccaaccctttctccatctctctgcagCTAGAAGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGTCACTACTACTGCCGTAAGCGTCTTGGGGTAGTCAAAAATGCATTGGCAGCCAGCACAGGTGTCACTCTGACATATGGCATCTTCCTTGgtgaggatgacataataactctgcttgcactctttctctagaacttcaaa #### Vegfb_ID1958_2 --> 0 - 1 Original Alignment GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAg gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAggtagggaggggtataagcgtccagatgctagtatggagttgggctagcat Alignment from CESAR GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAg gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAggtagggaggggtataagcgtccagatgctagtatggagttgggctagcat Alignment from Spaln_aa2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAGgtagggaggggtataagcgtccagatgctagtatggagttgggctagcat Alignment from Spaln_nt2Genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAGgtagggaggggtataagcgtccagatgctagtatggagttgggctagcat Alignment from Pairagon GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAGgtagggaggggtataagcgtccagatgctagtatggagttgggctagcat Alignment from Exonerate_protein2genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAGgtagggaggggtataagcgtccagatgctagtatggagttgggctagcat Alignment from Exonerate_coding2genome GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAGgtagggaggggtataagcgtccagatgctagtatggagttgggctagcat Alignment from GeneWise GCCCCTGTGTCCCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gctggtgttttttgatcgcacctcgtacgcacgtgctcctctgtccgcagGCCCCTGTGTCACAGTTTGATGGCCCCAGTCACCAAAAGAAAGgtagggaggggtataagcgtccagatgctagtatggagttgggctagcat #### Vldlr_ID5806_5 --> 2 - 1 Original Alignment gcAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCc accccccagagatagtgttgccaataagggtgaatggttttattttccagggAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCACCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCcgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg Alignment from CESAR gcAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCc accccccagagatagtgttgccaataagggtgaatggttttattttccagggAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCACCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCcgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg Alignment from Spaln_aa2Genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC accccccagagatagtgttgccaataagggtgaatggttttattttccagGGAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGTCCA---CCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg Alignment from Spaln_nt2Genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC accccccagagatagtgttgccaataagggtgaatggttttattttccagGGAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTG---TCCACCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg Alignment from Pairagon GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC accccccagagatagtgttgccaataagggtgaatggttttattttccagGGAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTG---TCCACCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg Alignment from Exonerate_protein2genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC accccccagagatagtgttgccaataagggtgaatggttttattttccagGGAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCACCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg Alignment from Exonerate_coding2genome GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC accccccagagatagtgttgccaataagggtgaatggttttattttccagGGAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCACCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg Alignment from GeneWise GCAACATAACATGTAGTGCAGATGAGTTCACTTGCTCCAGTGGCCGCTGCGTCTCCAGAAACTTTGTGTGCAATGGCCAGGATGACTGTGACGATGGCAGTGATGAGCTGGACTGTGCTCCACCAACCTGCGGAGCCCACGAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCAGCTGGGTGTGTGATGATGACGCAGACTGTTCAGACCAATCAGACGAGTCTCTTGAGCAGTGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATCCAGTGTGGCTCTGGCGAGTGCATTCACAAAAAATGGCGGTGTGACGGAGACCCTGACTGCAAGGACGGCAGCGATGAGGTCAACTGCC accccccagagatagtgttgccaataagggtgaatggttttattttccagGGAACATAACATGCGGTGCAGATGAGTTTGCTTGTTCAAGTGGTCGCTTTGTTTCCAGAAACTTTGTGTGCAATGGACAGGATGACTGTGATGATGGCAGTGAAGAGTTAGACTGT---CCACCAACCTGTGGAGCCCACAAGTTCCAGTGCAGCACCTCTTCCTGCATTCCCCTCGGCTGGGTATGTGATGATGATGCAGACTGCTCAGACCAATCAGATGAGTCTCTTGAGCCATGTGGCCGTCAGCCTGTGATACATACCAAATGTCCTACCAGTGAGATTCAATGTGGCTCTGGGAAGTGTATTCATAAAAAATGGCGATGTGACGGAGACCCTGACTGCAAGGATGGGAGTGATGAGGTAAACTGCCgtgagcaactctgagtcaaattccatgtcccagccagaagtgggcacttg #### Vldlr_ID5817_16 --> 2 - 1 Original Alignment gtACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAg ttccgagtgtacattgtagtctgagatataatttttctcttttattttaggtACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAggtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca Alignment from CESAR gtACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAg ttccgagtgtacattgtagtctgagatataatttttctcttttattttaggtACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAggtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca Alignment from Spaln_aa2Genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG ttccgagtgtacattgtagtctgagatataatttttctcttttattttagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAGgtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca Alignment from Spaln_nt2Genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG ttccgagtgtacattgtagtctgagatataatttttctcttttattttagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAGgtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca Alignment from Pairagon GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG ttccgagtgtacattgtagtctgagatataatttttctcttttattttagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAGgtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca Alignment from Exonerate_protein2genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG ttccgagtgtacattgtagtctgagatataatttttctcttttattttagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAGgtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca Alignment from Exonerate_coding2genome GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG ttccgagtgtacattgtagtctgagatataatttttctcttttattttagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAGgtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca Alignment from GeneWise GTACTTCAACTCCTGTGACTTACAGTGAGACAAAAGATATCAACACAACAGACATTCTACGAACTAGTGGACTGGTTCCTGGAG ttccgagtgtacattgtagtctgagatataatttttctcttttattttagGTACTTTAACTCCTGTGACCTACAGTGAGACAAAAGACATCAACACAGCAGTCATTCTACAAACTAGTGGACTGGTCCCTGGAGgtgagaggttgaaaactttagtgtgtatctaagccatacatgattactca #### Vps13a_ID4055_68 --> 1 - 0 Original Alignment aGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagaGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct Alignment from CESAR aGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagaGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct Alignment from Spaln_aa2Genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagAGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct Alignment from Spaln_nt2Genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagAGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct Alignment from Pairagon AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagAGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct Alignment from Exonerate_protein2genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagAGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct Alignment from Exonerate_coding2genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagAGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct Alignment from GeneWise AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatataacgcgtgctctgatttcttccagAGCTACAGAGACTTCTGACGTAGAGAGTTTACGACCTCCCAGGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCGGGAAATCAGATGTTACAGgtaaaataagtaacaagttacaaattcccgtcaattttcaaaaataatct #### Vps13a_ID4061_62 --> 1 - 0 Original Alignment gCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcaggCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta Alignment from CESAR gCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcaggCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta Alignment from Spaln_aa2Genome GCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcagGCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta Alignment from Spaln_nt2Genome GCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcagGCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta Alignment from Pairagon GCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcagGCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta Alignment from Exonerate_protein2genome GCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcagGCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta Alignment from Exonerate_coding2genome GCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcagGCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta Alignment from GeneWise GCTTGCCTTTTTTGAACTCAACTACCAGTTCCATACAACATCTGAATTGCAATCTGAAGTAATAAGACACTATTCCAAACAG gtacctaagcacagtacaacactaatatctgacctactttcttctttcagGCTCGCCTTTTTTGAACTCAACTACCAATTCCATACAACATCTGAATTGCAATCTGAGGTAATAAGACATTATTCTAAACAGgtaagtagaggttaccctacaaaacaaagaagattggtgtaggctggtta #### Vps13a_ID4071_52 --> 0 - 2 Original Alignment CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAag aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAaggtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga Alignment from CESAR CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAag aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAaggtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga Alignment from Spaln_aa2Genome CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAAG aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAAGgtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga Alignment from Spaln_nt2Genome CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAAG aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAAGgtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga Alignment from Pairagon CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAAG aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAAGgtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga Alignment from Exonerate_protein2genome CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAAG aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAAGgtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga Alignment from Exonerate_coding2genome CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAAG aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAAGgtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga Alignment from GeneWise CTTGGAGGTATTATTGCAGAAGTTAATTTGGCTGAGCACTCTACAGTTATTACATTTTCAGATTACCATGATGGAGCAGCTACATTCCTATTAATAAATCATACCAAGAGTGACCCTGTTCAGTACAACCAAAG aatatattcctgtgtttgttactgaggtcttactgttaacctttgaatagCTTGGGGTTATTATTGCAAAAGTTAATTTGGTTGAGCACTCTACAGTTATCACATTTTCAGATTACCATGATGGGGCAGCTACATTCCTATTAATTAATCATACCAGAAGTGACCCTGTTCAGTACAACCAAAGgtaagcagatagattgccatcgtacagtaagatacaaatagtaggtttga #### Vps13a_ID4077_46 --> 0 - 2 Original Alignment ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACcg tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGAA---------------CCATTTGCCTCATACcggtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat Alignment from CESAR ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACcg tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGAA---------------CCATTTGCCTCATACcggtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat Alignment from Spaln_aa2Genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGAA---------------CCATTTGCCTCATACCGgtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat Alignment from Spaln_nt2Genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGA---------------ACCATTTGCCTCATACCGgtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat Alignment from Pairagon ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGA---------------ACCATTTGCCTCATACCGgtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat Alignment from Exonerate_protein2genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGAA---------------CCATTTGCCTCATACCGgtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat Alignment from Exonerate_coding2genome ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGAA---------------CCATTTGCCTCATACCGgtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat Alignment from GeneWise ATTAAGAATCATTTTTCAATCCCAATTTCCGTTTTTGAAGGAGATACTTTATTGGGAATTGCTTCACCTGAAAATGAATTTAACATACCATTAGCATCTTACCG tgaatatttggttatctggttattatcttgtcttccttcctgccatgcagATCAAGAACCATTTCTCAATCCCAATTTCTGTCTTCGAAGGGGATACCTTGTTGGGAATTGCTTCTCCAGAA---------------CCATTTGCCTCATACCGgtgagcttgtctacctaaacatacagtttcaggagcatcctagtttttat #### Vps13a_ID4084_39 --> 2 - 0 Original Alignment caCCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagcaCCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg Alignment from CESAR caCCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagcaCCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg Alignment from Spaln_aa2Genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagCACCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg Alignment from Spaln_nt2Genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagCACCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg Alignment from Pairagon CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagCACCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg Alignment from Exonerate_protein2genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagCACCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg Alignment from Exonerate_coding2genome CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagCACCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg Alignment from GeneWise CACCTGCACAGGAATTAGGGAAGTGGGAAATGAATATTCTTATTAAAAATCCAGAGATTGTGTTTGTGGCTGACATGACAAGAAACGATGCTCCTGCCTTAGTCATTACGACACAGTGTGAAATTTGCTGCAAAGGTGAACCTACAAGCAATACAGTGACTGCTGCCATTAAAGATCTCCAAGTCAGAGCGTGCCCATTTCTTCCAGTCAAGAGAAAGGGCAAAGTCACCACT ttcctggctaatattagcgagtaggtataaatggcttccttcttatgcagCACCTGCACAGGAATTAGGGAAATGGGAAATGAACATTTTAATTAAAAATCCAGAGATCTTGTTTGTGGCTGACATGACAAGGAATGATGCTCCTGCCTTAGTCATTACAACAGAGTGTGAGATTTGCTGCAAAGGTGATCCCACAAGCAATACTGTAACTGCAGCAATAAAAGATCTACAGGTCAGAGCATGTCCTTTTCTTCCAGTCAAGAGAAAGGGCAAAGTTACTACTgtaagcttaagatccaaactactaaattgtagtttactctgggggcactg #### Vps13a_ID4090_33 --> 0 - 2 Original Alignment GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACag gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACaggtaagataattttatgatatataaagtccaccttgttctcattatgtatg Alignment from CESAR GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACag gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACaggtaagataattttatgatatataaagtccaccttgttctcattatgtatg Alignment from Spaln_aa2Genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACAGgtaagataattttatgatatataaagtccaccttgttctcattatgtatg Alignment from Spaln_nt2Genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACAGgtaagataattttatgatatataaagtccaccttgttctcattatgtatg Alignment from Pairagon GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACAGgtaagataattttatgatatataaagtccaccttgttctcattatgtatg Alignment from Exonerate_protein2genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACAGgtaagataattttatgatatataaagtccaccttgttctcattatgtatg Alignment from Exonerate_coding2genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACAGgtaagataattttatgatatataaagtccaccttgttctcattatgtatg Alignment from GeneWise GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagaaaggtttattatggagtgatgtgacgcccttcccccgcatctccagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAGATGGCCGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAATATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGTAAAATGCGACTATACAGgtaagataattttatgatatataaagtccaccttgttctcattatgtatg #### Vps13a_ID4092_31 --> 2 - 0 Original Alignment ggCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagggCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca Alignment from CESAR ggCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagggCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca Alignment from Spaln_aa2Genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagGGCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca Alignment from Spaln_nt2Genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagGGCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca Alignment from Pairagon GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagGGCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca Alignment from Exonerate_protein2genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagGGCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca Alignment from Exonerate_coding2genome GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagGGCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca Alignment from GeneWise GGCTTGATTCTGAGATGATTATGAAACCTCTAGTCACTGAAATAAATGCAAAGCTAAGGAATATAATTGTGTTAGATTCTGATAAAATGGCTATCTACAAAAAG ttaactaagttcaaaaggcagtatagtcggtgtatgcctgtcacccacagGGCTGGACTCTGAGATGATCATGAAACCTCTAGTTACAGAAATAAATGCAAAGCTAAGGACTATAATCGTGTTAGATTCTGATAAGATGGCTATATACAAAAGAgtaagtatttacctctactgagtgttgatattagtatgtatcatgagaca #### Vps13a_ID4101_22 --> 2 - 2 Original Alignment gtGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCaa tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacaggtGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTaagtaggaatacactgtctcctttataggttggccagttttgatttcttcat Alignment from CESAR gtGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCaa tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacaggtGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTaagtaggaatacactgtctcctttataggttggccagttttgatttcttcat Alignment from Spaln_aa2Genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTAAgtaggaatacactgtctcctttataggttggccagttttgatttcttcat Alignment from Spaln_nt2Genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTAAgtaggaatacactgtctcctttataggttggccagttttgatttcttcat Alignment from Pairagon GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTAAgtaggaatacactgtctcctttataggttggccagttttgatttcttcat Alignment from Exonerate_protein2genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTAAgtaggaatacactgtctcctttataggttggccagttttgatttcttcat Alignment from Exonerate_coding2genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTAAgtaggaatacactgtctcctttataggttggccagttttgatttcttcat Alignment from GeneWise GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAA tatgtagaaagcatatgaatgatcaatatatatatgaaaacttcttacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGCATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATGCCTAAgtaggaatacactgtctcctttataggttggccagttttgatttcttcat #### Vps13a_ID4105_18 --> 1 - 0 Original Alignment aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcaggTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCC------GAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac Alignment from CESAR aTTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcaggTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCC------GAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac Alignment from Spaln_aa2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcagGTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCC------GAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac Alignment from Spaln_nt2Genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCA---GATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcagGTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCC------CGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac Alignment from Pairagon ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTT---ACCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcagGTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCC------CGAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac Alignment from Exonerate_protein2genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcagGTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCC------GAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac Alignment from Exonerate_coding2genome ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTA---CCAGATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcagGTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCC------GAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac Alignment from GeneWise ATTTGAAACCAAAATTGATTCATTTCATATTACTGGCTTACCA---GATGATTTCAAAAAACCCCACCTACTGTCTTCATTGGATGATACGTCACTCCTCCAGATTACATTTGAGATAAATCCTTTAAATGAAACTGTTGCTCAGAGGTGCACCATAGAGGCTGAGCCTCTAGAGATAATATATGATGCA agtcttcattcccatgtatattaaccccccattctctttcccatgttcagGTTTGAAACAAAAATAGATTCGTTTGATATCACTGGCTTACCACCAGACGACTCCCAAAAACCCCACTTACTGTCTTCACTGGATGATACATTGCTACTTCAGATTACATTTGAAATAAATCCC------GAAATGGTAGCTCAGAAGTGCACCATAGAGGCTGAGCCTCTGGAAATAATATCTCATGCTgtgagtaattgtatattcccaatattaagtttcagtgtgctcttttgtac #### Vps13a_ID4112_11 --> 2 - 0 Original Alignment ttTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagttTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac Alignment from CESAR ttTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagttTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac Alignment from Spaln_aa2Genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagTTTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac Alignment from Spaln_nt2Genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagTTTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac Alignment from Pairagon TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagTTTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac Alignment from Exonerate_protein2genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagTTTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac Alignment from Exonerate_coding2genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagTTTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac Alignment from GeneWise TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG aagaggaggttataaatagaacaacaacgctttaatgcattctgtcatagTTTTTAGA---ATATCTGCCAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATCCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATTTAATAAACCACAGgtaagtgggggaggagccgagatggctgaataggaacagccccagtcgac #### Vps13a_ID4117_6 --> 2 - 0 Original Alignment aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagaaAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt Alignment from CESAR aaAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagaaAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt Alignment from Spaln_aa2Genome AAAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagAAAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt Alignment from Spaln_nt2Genome AAAAGCCTCGGGAGGAGAAACAGGACACGTTT---------------ACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagAAAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt Alignment from Pairagon AAAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagAAAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt Alignment from Exonerate_protein2genome AAAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagAAAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt Alignment from Exonerate_coding2genome AAAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagAAAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt Alignment from GeneWise AAAAGCCTCGGGAGGAGAAACAGGACACG---------------TTTACAGAAAAGTTAGTTACTCAGATCATACAGAACCTTCAAGTGCAAATCTCCAGCATCCATATTCGTTATGAAGACGAT ctgctgatcactctagcttgtatttcagcaatgtctcccctttatttcagAAAAGCCTCGGGAGGAGGAACATGATACATTACGCTGGATGGTCTTCACAGAAAAGCTGGTTACACAGATCATACAAAATCTTCAAGTGCAGATATCCAGCATCCATATATGTTATGAAGATGATgtatgtgtgttgtacttattattaaagtatcagaatgtgtatggaattgt #### Vps13a_ID4120_3 --> 0 - 1 Original Alignment CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAg catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAggtagcattacccaggttgagttttacctgtaagctactcacagtgtctac Alignment from CESAR CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAg catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAggtagcattacccaggttgagttttacctgtaagctactcacagtgtctac Alignment from Spaln_aa2Genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAGgtagcattacccaggttgagttttacctgtaagctactcacagtgtctac Alignment from Spaln_nt2Genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAGgtagcattacccaggttgagttttacctgtaagctactcacagtgtctac Alignment from Pairagon CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAGgtagcattacccaggttgagttttacctgtaagctactcacagtgtctac Alignment from Exonerate_protein2genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAGgtagcattacccaggttgagttttacctgtaagctactcacagtgtctac Alignment from Exonerate_coding2genome CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAGgtagcattacccaggttgagttttacctgtaagctactcacagtgtctac Alignment from GeneWise CATGAATTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAG catttgtgagctttatattaatccatcttaaaaatgtgtttgttttatagCATGAATTGGATGTACCATTTAAAGTTAGTGGTGGTCATATAGgtagcattacccaggttgagttttacctgtaagctactcacagtgtctac #### Vps13a_ID4121_2 --> 2 - 0 Original Alignment gaGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacaggaGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca Alignment from CESAR gaGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacaggaGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca Alignment from Spaln_aa2Genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacagGAGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca Alignment from Spaln_nt2Genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacagGAGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca Alignment from Pairagon GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacagGAGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca Alignment from Exonerate_protein2genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacagGAGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca Alignment from Exonerate_coding2genome GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacagGAGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca Alignment from GeneWise GAGCTGTGGCCCTCAAGAACCTTGTAATTAAAGAAAATGCATTG ttaatataaaacttaccttatcagacttgctcaccctcaacaccctacagGAGCTGTGGCCCTCCAGAATCTAGTAATTAAAGAAAATGCATCAgtaaggttggcttgtgaaagttggtataaggcacctatcatttgatcaca #### Vps37c_ID2982_2 --> 0 - 1 Original Alignment GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGg ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGggtattgacagcttactacaggtactaaagtgacaatctcccacacctatt Alignment from CESAR GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGg ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGggtattgacagcttactacaggtactaaagtgacaatctcccacacctatt Alignment from Spaln_aa2Genome GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGGgtattgacagcttactacaggtactaaagtgacaatctcccacacctatt Alignment from Spaln_nt2Genome GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGGgtattgacagcttactacaggtactaaagtgacaatctcccacacctatt Alignment from Pairagon GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGGgtattgacagcttactacaggtactaaagtgacaatctcccacacctatt Alignment from Exonerate_protein2genome GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGGgtattgacagcttactacaggtactaaagtgacaatctcccacacctatt Alignment from Exonerate_coding2genome GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGGgtattgacagcttactacaggtactaaagtgacaatctcccacacctatt Alignment from GeneWise GTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCGGAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAATACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGG ccagaaaggtagagaatcccggagtgcccgccttgcatcgactctcgcagGTTCAGGACTTGCAGTTAGAACGAGACATGGCGGTGGCCACAAACCGGAGCCTAGCAGAGCAGAACCTTGAGTTCCAGGGTCCCCTGGAAATCAGTCACTCTAATCTCTCAGATAAATACCAGGAGCTGCGAAAGCTTGTAGAGCAGTGCCAGGAGCAGAAAGCAAAGCTGGgtattgacagcttactacaggtactaaagtgacaatctcccacacctatt #### Vti1a_ID11666_5 --> 0 - 1 Original Alignment AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTg acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTggtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta Alignment from CESAR AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTg acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTggtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta Alignment from Spaln_aa2Genome AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTG acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTGgtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta Alignment from Spaln_nt2Genome AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTG acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTGgtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta Alignment from Pairagon AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTG acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTGgtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta Alignment from Exonerate_protein2genome AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTG acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTGgtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta Alignment from Exonerate_coding2genome AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTG acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTGgtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta Alignment from GeneWise AGGGCACATCTGCTGGATAACACGGAGAGGCTGGAAAGGTCGTCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTG acatacacaactctgcactcttctaagtgtcaccattgcctttttgtcagAGGGCACATCTGCTGGATAATACAGAGAGGCTGGAAAGGTCATCTCGGAGACTAGAGGCTGGGTACCAGATAGCAGTGGAGACTGgtgagtgatctagaagtaattcaatcatcacaattacaggcagcagtcta #### Vwa2_ID12232_5 --> 1 - 2 Original Alignment aGGTGGG---CGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag ccagaaactttaaactatgttcttatctcacattcttgttttatttttagaGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCaagtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt Alignment from CESAR aGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCag ccagaaactttaaactatgttcttatctcacattcttgttttatttttagaGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCaagtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt Alignment from Spaln_aa2Genome AGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaactttaaactatgttcttatctcacattcttgttttatttttagAGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt Alignment from Spaln_nt2Genome AGGTGGGC---GCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaactttaaactatgttcttatctcacattcttgttttatttttagAGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt Alignment from Pairagon AGGTGGGC---GCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaactttaaactatgttcttatctcacattcttgttttatttttagAGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt Alignment from Exonerate_protein2genome AGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaactttaaactatgttcttatctcacattcttgttttatttttagAGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt Alignment from Exonerate_coding2genome AGGTGGGCGC---ACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaactttaaactatgttcttatctcacattcttgttttatttttagAGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt Alignment from GeneWise -AAAGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG ccagaaactttaaactatgttcttatctcacattcttgttttatttttagAGCTGGGCATTGCACAAAAACAGGCCTAGCCCTGAAGCGCCTGAGCAGAGGATTCCCTGGAGGTAGAAATGACTCTGTTCCCCAAATTCTTATTATTCTCACAGACGGTAGGGCCCAGGGGCCTGTGGCCCTCCCAACTAAACAGCTGAGAGAAAGGGGCATTGTTGTGTTTACTGTAGGAGTCCGCTTCCCCAAgtaagtatatacaacaattagtctttagcagagggatcagtgtgcctgtt #### Vwa2_ID12237_10 --> 2 - 1 Original Alignment ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagctCCAAAA---AGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCC---ACCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAggtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc Alignment from CESAR ccCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAg catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagctCCAAAA---AGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCC---ACCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAggtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc Alignment from Spaln_aa2Genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCC---ACCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAGgtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc Alignment from Spaln_nt2Genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagCTCCAAA---AAGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCCA---CCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAGgtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc Alignment from Pairagon CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagCTCCAAA---AAGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCCA---CCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAGgtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc Alignment from Exonerate_protein2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCC---ACCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAGgtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc Alignment from Exonerate_coding2genome CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCC---ACCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAGgtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc Alignment from GeneWise CCCCGAAGCTGAGCCTGGAATGCAGAATCGATGTCCTCTTCCTGCTGGACAGTTCTGCAGGCACCACATTGGGGGGCTTCCGGAGGGCCAAGGCCTTTGTCAAGCGCTTTGTGCAGGCCGTGCTGAGGGAGGACTCCCGAGCCCGCGTTGGGATAGCCAGTTATGGCAGGAATCTAATGGTGGCGGTGCCCGTCGGGGAGTACCAGCATGTGCCGGACCTGATCAGGAGCCTTGACAGCATTCCCTTCAGCGGTGGCCCGACCCTAACCGGGAGTGCCTTGCTCCAGGTGGCAGAGCACGGCTTTGGGAGTGCCAGCAGGACTGGTCAGGACAGGCCACGCAGAGTAGTAGTTCTGCTCACTGAATCACGCTCCCAGGATGAGGTGTCTGGGCCAGCAGCTCACGCAAGGGCTCGGGAGCTACTCCTCCTGGGCGTGGGCAGTGAGATCCTGCAGGCGGAGCTGGTGAAGATCACCGGTAGCCCGAAGCATGTGATGGTCCACACAGACCCTCAGGACCTGTTCAGCCAAATCCCAGAGCTGCAGAGGAGGCTATGCAGCCAGCCACGGCCAG catgggaaggaagaatcaatgtcataaattaaccatctgcttctgtttagCTCCAAAA---AGCTTGGAATGCAGAATTGATGTACTATTCCTGCTGGACAGTTCTGCAGGTACTACTTTGGGGGGATTCCGGAGAGCC---ACCTTTGTCAAACGCTTTGTTCAGGCAGTGCTGAGGGAGGACTCCCAAGCCCGCATTGGGATGGCAAGCTATGGTAGGAATCTGATGGTGTCGGTGCCTGTTGGGGAGTACCAGCATGTGCCAGACTTGATCAGGAGTCTTGACAGTGTTCCCTTTAGTGGGGGCCCAACCCTAACTGGCAGTGCTTTGCTTCAGGTAGCTGAACATGGCTTTGGGAGTGCAAGCAGGACAGGTCAGGACCGGCCATGCCGAGTAGTCGTCCTTCTCACTGAATCACGTTCCCAGGATGAGGTGTCTGGACCGGCAGCTCATGCAAGGGCTTGGGAGCTATTACTCTTGGGTGTGGGTAGTGAGATCCTGCAGGCAGAGCTAGTGAAGATCACTGGTAGTCCAAAGCATGTGATGGTTCACACAGAACCTCAGGACCTGTTCAGCCAGATTCCAGAGCTCCAAAGGAGGCGTTGCAGCCAACCACGCCCAGgtttgtctgctgctgggccagccacagtctcattaagtagaaagtctgcc #### Vwa2_ID12238_11 --> 2 - 1 Original Alignment gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCATC---GAGTGGCTATGTAGAg ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccaggcTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGCCGC---------CCTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAggtgaggtaggacagatcacattgataatgcacttctcatataagttaaac Alignment from CESAR gcTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAg ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccaggcTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAggtgaggtaggacagatcacattgataatgcacttctcatataagttaaac Alignment from Spaln_aa2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccagGCTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAGgtgaggtaggacagatcacattgataatgcacttctcatataagttaaac Alignment from Spaln_nt2Genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGCG------TGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccagGCTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGCCGCC---------CTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAGgtgaggtaggacagatcacattgataatgcacttctcatataagttaaac Alignment from Pairagon GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCAT------GAGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTCA---TCGAGTGGCTATGTAGAG ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccagGCTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGCCGCC---------CTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAGgtgaggtaggacagatcacattgataatgcacttctcatataagttaaac Alignment from Exonerate_protein2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccagGCTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAGgtgaggtaggacagatcacattgataatgcacttctcatataagttaaac Alignment from Exonerate_coding2genome GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATG------AGCCAGGCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccagGCTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAGgtgaggtaggacagatcacattgataatgcacttctcatataagttaaac Alignment from GeneWise GCTGCCAGGCACAGTCACTGGACCTGGTCTTCCTGTTGGATGCCTCTGCCTCTGTGGGACGTGAGAACTTTGCCCAAATGCAGAGCTTCATCAGGAAATGCACCCTCCGGTTTGATGTGAATCCTGATGTGACACAGGTTGGCCTGGTGGTATATGGCAGCCGGGTGCAGACTGCCTTCGGGCTAGACACCCATCCCACCCGGGCTGCCGTGTTGCGGGCCATGAGCCAG------GCTCCCTACCTAGGGGGTGTGGGTTCTGCTGGTACAGCCTTGCTGCACATTGAGGACAAGGTGATGACGGTCCAGAGGGGTGCCCGCCCCGGTGTCCCCAAGGCCGTGGTGATGCTCACAGGCGGGAGTGGGGCAGAAGATGCAGCTGTCCCTGCCCAGAAGCTGAGAGGCAATGGCATCTCAGTCTTGGTTATGAGC------GTGGGAGCCGTCCTCAGGGAGGCAGTACGGAGGCTTGCCGGTCCACGCGACTCCCTGATCCATGTGGCAGCTTACACAGACCTTCCGTACCATCAGGACATGCTC---ATCGAGTGGCTATGTAGAG ctacaatcagcgagattgatgtaagtatttaatgctttttgtttttccagGCTGCCAGGCACAGTCATTGGAACTTATATTCCTACTGGATGCCTCAGCTTCAGTAGGACGTGAGAACTTTGCCCACATGCAGAGCTTCATCAGGACATGCACTCTTCGTTTTGATGTAAATCCTGGTGTGACTCAGGTTGGCCTAGTGGTATATGGC---------CGCCCTGCCTTCGGGCAAGACACCCATCCCACACGGGCTGCTGTATTGAGGACTATGAGCCAGAGCCAGGCTCCCTATCTGGGGGGTGGTGGTTCTGCTGGTACTGCCCTGCTACATATTGAAGACACAGTGATGATGGACCAGAGGGGCGCACACCCAGGTGTCCCCAAGGCTGTGGTGATGGTCACAGGTGGGAGTGGGGCAGAAGATGCAGCCATACCTGCCCAGAAATTAAGAGGAAATGGCATTTCAGTTCTGGTTATGAGTGAACGAGTAGGAGCTGTCCTCAAGGAAGCAGTACAGAGACTTGCCTGTCCATGTGACTCTCTGATCTATGTTGCAGGCTACACAGACCTTCCTTACCATCATGACATGCTCACTGTAGAATGGCTATGCAGAGgtgaggtaggacagatcacattgataatgcacttctcatataagttaaac #### Vwce_ID2949_4 --> 2 - 1 Original Alignment aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg tatctgttgtacagctgttttgacatgtcttgatacagtttgtttttcagaaGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTGGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAggtaagttgtctgctagtcagggagggtggaaggtggaattagatcctttc Alignment from CESAR aaGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGg tatctgttgtacagctgttttgacatgtcttgatacagtttgtttttcagaaGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTGGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAggtaagttgtctgctagtcagggagggtggaaggtggaattagatcctttc Alignment from Spaln_aa2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgttgtacagctgttttgacatgtcttgatacagtttgtttttcagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTGGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtaagttgtctgctagtcagggagggtggaaggtggaattagatcctttc Alignment from Spaln_nt2Genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgttgtacagctgttttgacatgtcttgatacagtttgtttttcagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTGGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtaagttgtctgctagtcagggagggtggaaggtggaattagatcctttc Alignment from Pairagon AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgttgtacagctgttttgacatgtcttgatacagtttgtttttcagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTGGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtaagttgtctgctagtcagggagggtggaaggtggaattagatcctttc Alignment from Exonerate_protein2genome AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgttgtacagctgttttgacatgtcttgatacagtttgtttttcagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTGGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtaagttgtctgctagtcagggagggtggaaggtggaattagatcctttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAGCCCATGGATCCTGCGGGGAGTATGGCTGTGATCTCACCTGTAACCATGGTGGCTGTCAGGAGGTAGCCCGAGTATGCCCTGTGGGTTTCTTGATGACTGAGACAGCTGTTGGTATCCGGTGTGCGG tatctgttgtacagctgttttgacatgtcttgatacagtttgtttttcagAAGCCCATGGGTCCTGTGGGGAGTATGGCTGTGATCTTACCTGTAACCATGGTGGCTGTCAGGAGGTGGCCCGAGTATGCCCTGTGGGTTTGTTGATGACTGAGACGGCTGTCGGTATTCGCTGTGCAGgtaagttgtctgctagtcagggagggtggaaggtggaattagatcctttc #### Vwce_ID2954_9 --> 0 - 1 Original Alignment GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTg ttacattctgcgctccattgtaactccacagcttctttttcatctcttagGATGGGGAGGTGACCTGTGGAGGAATAAGGTGTGATGCCACCTGCTCTCACCCAGTTCCCCCCAGAGATGGGGGGTGCTGCCCCTCTTGCACTggtaagtgatcatctgcctttattttttctaagcccagggtctatctatca Alignment from CESAR GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTg ttacattctgcgctccattgtaactccacagcttctttttcatctcttagGATGGGGAGGTGACCTGTGGAGGAATAAGGTGTGATGCCACCTGCTCTCACCCAGTTCCCCCCAGAGATGGGGGGTGCTGCCCCTCTTGCACTggtaagtgatcatctgcctttattttttctaagcccagggtctatctatca Alignment from Spaln_aa2Genome GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTG ttacattctgcgctccattgtaactccacagcttctttttcatctcttagGATGGGGAGGTGACCTGTGGAGGAATAAGGTGTGATGCCACCTGCTCTCACCCAGTTCCCCCCAGAGATGGGGGGTGCTGCCCCTCTTGCACTGgtaagtgatcatctgcctttattttttctaagcccagggtctatctatca Alignment from Spaln_nt2Genome GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTG ttacattctgcgctccattgtaactccacagcttctttttcatctcttagGATGGGGAGGTGACCTGTGGAGGAATAAGGTGTGATGCCACCTGCTCTCACCCAGTTCCCCCCAGAGATGGGGGGTGCTGCCCCTCTTGCACTGgtaagtgatcatctgcctttattttttctaagcccagggtctatctatca Alignment from Pairagon GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTG ttacattctgcgctccattgtaactccacagcttctttttcatctcttagGATGGGGAGGTGACCTGTGGAGGAATAAGGTGTGATGCCACCTGCTCTCACCCAGTTCCCCCCAGAGATGGGGGGTGCTGCCCCTCTTGCACTGgtaagtgatcatctgcctttattttttctaagcccagggtctatctatca Alignment from Exonerate_protein2genome GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTG ttacattctgcgctccattgtaactccacagcttctttttcatctcttagGATGGGGAGGTGACCTGTGGAGGAATAAGGTGTGATGCCACCTGCTCTCACCCAGTTCCCCCCAGAGATGGGGGGTGCTGCCCCTCTTGCACTGgtaagtgatcatctgcctttattttttctaagcccagggtctatctatca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGGAGAGGTGACCTGTGGAGGAGTAAGGTGTGACGCTACCTGTTCCCACCCAGTTCCCCCGAGAGATGGGGGGTGCTGCCCCTCTTGCACTG ttacattctgcgctccattgtaactccacagcttctttttcatctcttagGATGGGGAGGTGACCTGTGGAGGAATAAGGTGTGATGCCACCTGCTCTCACCCAGTTCCCCCCAGAGATGGGGGGTGCTGCCCCTCTTGCACTGgtaagtgatcatctgcctttattttttctaagcccagggtctatctatca #### Vwce_ID2958_13 --> 0 - 1 Original Alignment AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAg ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTggtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga Alignment from CESAR AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAg ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTggtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga Alignment from Spaln_aa2Genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga Alignment from Spaln_nt2Genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga Alignment from Pairagon AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga Alignment from Exonerate_protein2genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga Alignment from Exonerate_coding2genome AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga Alignment from GeneWise AATGGGGAGGTAGAGTGCTCCTTCACACCATGTCCAGAGCTGGAGTGCCCTCGAGAGGAGTGGCTGCTGGGCCCAGGACAGTGCTGTTTTACCTGTCGGGAACCCACACCCACCACAG ctttggtcttctaccaattaaggctaattaggctctgtctctttccacagAACGGTGAGGTAGAGTGCTCCTTTACACCATGTTCAGAGCTGGAGTGTCCTCGGGAGGAATGGCTGCTAGGACCAGGACAGTGCTGTGTCACCTGCCGACATCCTACACCCACCACTGgtaagtgccagcagtttggacacccaattcaaagatggagtgttcttgga #### Vwce_ID2961_15 --> 0 - 1 Original Alignment GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAg ctatgagtcctttttaccacaactactggctttccctcttccttgcccagGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAggtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca Alignment from CESAR GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAg ctatgagtcctttttaccacaactactggctttccctcttccttgcccagGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAggtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca Alignment from Spaln_aa2Genome GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG ctatgagtcctttttaccacaactactggctttccctcttccttgcccagGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAGgtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca Alignment from Spaln_nt2Genome GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG ctatgagtcctttttaccacaactactggctttccctcttccttgcccagGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAGgtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca Alignment from Pairagon GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG ctatgagtcctttttaccacaactactggctttccctcttccttgcccagGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAGgtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca Alignment from Exonerate_protein2genome GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG ctatgagtcctttttaccacaactactggctttccctcttccttgcccagGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAGgtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca Alignment from Exonerate_coding2genome TCGGACAGATCTGGTCGCCTGGTGATCCCTGTGAGTTATGCGTCTGCCAGGCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG TGAGTCCTTTTTACCAC---AACTACTGGCTTTCCCTCTTCCTTGCCCAGGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAGgtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca Alignment from GeneWise GCAGACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCAGCAG ctatgagtcctttttaccacaactactggctttccctcttccttgcccagGCAGATGGGTCTGTGAGCTGCAAGAGAACACACTGTGTTGACTATTGCCCACACCCTGTCTGGATTCCAGGACAGTGTTGCCCCGATTGTTCAGCAGgtgtgcagaatcattgcttgccaaacaagctgatttcagggctactggca #### Vwce_ID2965_19 --> 0 - 1 Original Alignment CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAg tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAggtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg Alignment from CESAR CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAg tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAggtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg Alignment from Spaln_aa2Genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAGgtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg Alignment from Spaln_nt2Genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAGgtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg Alignment from Pairagon CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAGgtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg Alignment from Exonerate_protein2genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAGgtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg Alignment from Exonerate_coding2genome CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAGgtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg Alignment from GeneWise CTGGGAGAGGTGAGCTGTGAGACGGTACCCTGCCGGCCAATCTGTACTGACCCCTCCTGCCCAG tcatccgtctgggttccctcatgggtacccctgacactgggtactctcagCTTGGAGAGGTAAGTTGTGAGACAGTACCTTGCCGTTCTATCTGTACTGATCCCTCCTGCCCAGgtaagtgtggccaagccatccgaggatcgttgctcgcatactgccacatg #### Wdr74_ID2313_3 --> 0 - 2 Original Alignment ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATgggtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc Alignment from CESAR ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATgg tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATgggtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc Alignment from Spaln_aa2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc Alignment from Spaln_nt2Genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc Alignment from Pairagon ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc Alignment from Exonerate_protein2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc Alignment from Exonerate_coding2genome ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc Alignment from GeneWise ATCTTGGTGGGCTGTGCGGACAGAACCGTGAGGTACTTTAATGCTGAGGAGGGTACATTCCTGAGCCAGAGATACTGCCCAGGCGGGGAAGGCACGTTCCGAGGTCTCGCCCAGGCGGATGG tcttcattcttccctcatcttactcagccggattcctataccttttctagGTACTGGTGGGCTGTGCGGACAGAACTGTGAGGTACTTTAATGCCAAGGAGGGCACATTCCTAAGCCAGAGATACTGCCCAGGTGGGGAGGGGACATTCCGAGGTCTCACCCAGGTGGATGGgtaagagttacttacagtgtagcctgagttaaataaagtgtagggcactc #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAggtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAggtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcaggcAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcaggcAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from GeneWise TCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcaggcagACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctctttgaacattgttaaggtaatgccacttctttctccccagAATCATAAGAAGAATATAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAGTACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaccccatctttctgctacagtggcttcattctaacagtcccagtgac #### Wdr96_ID10340_31 --> 0 - 2 Original Alignment ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAag ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTT---------TGGCCAaggcgagtcattcctattcacttgacactaggggtaggggcaagcatggtct Alignment from CESAR ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAag ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTT---------TGGCCAaggcgagtcattcctattcacttgacactaggggtaggggcaagcatggtct Alignment from Spaln_aa2Genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTT---------TGGCCAAGgcgagtcattcctattcacttgacactaggggtaggggcaagcatggtct Alignment from Spaln_nt2Genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTTT---------GGCCAAGgcgagtcattcctattcacttgacactaggggtaggggcaagcatggtct Alignment from Pairagon ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTTT---------GGCCAAGgcgagtcattcctattcacttgacactaggggtaggggcaagcatggtct Alignment from Exonerate_protein2genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTTTGG---------CCAAGgcgagtcattcctattcacttgacactaggggtaggggcaagcatggtct Alignment from Exonerate_coding2genome ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGGCCAAG ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTTTGG---------CCAAGgcgagtcattcctattcacttgacactaggggtaggggcaagcatggtct Alignment from GeneWise ATTCTGGATCGAAGCTTCAAAAAGGAATTTTCTGACATTTTGGGTCACCAGGTGGATGTCCTCTACAAACTTTTTAAACGCCGG ttaacatgtgggagagcaaattcattaatcatgctgtgctttgccaacagATTCTGGATCGAAGCTTTCAAAAGGAATTTTCTGACATCTTGGATCACCACGTAGACATTCTCTACAAACTTTGGCCAAGGCGAgtcattcctattcacttgacactaggggtaggggcaagcatggtct #### Wdr96_ID10342_29 --> 0 - 0 Original Alignment GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc Alignment from CESAR GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc Alignment from Spaln_aa2Genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc Alignment from Spaln_nt2Genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc Alignment from Pairagon GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc Alignment from Exonerate_protein2genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc Alignment from Exonerate_coding2genome GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc Alignment from GeneWise GAGGAACTGAAAATAAACAACATTATATTTTCGTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTTTTGAAGAAACAGGAGGAGAAA tggatgtggtccttcctttcttacctgtaggaagctttgtcctttgatagGAAGAACTTAAAATAAACAACATTATATTTTCCTTGTTGTTGGATGAAGAATTCAGCTCCAGGGAACAGTTCTTGAACAACTGCCTCTTGAAGAAACAGGAGGAGAAGgtaggcacaagatcctggggtagcataaacacccctttcaagctcacacc #### Wdr96_ID10343_28 --> 0 - 0 Original Alignment TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg Alignment from CESAR TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg Alignment from Spaln_aa2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg Alignment from Spaln_nt2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg Alignment from Pairagon TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg Alignment from Exonerate_protein2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg Alignment from Exonerate_coding2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg Alignment from GeneWise TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcactcatttattacctgctttcccttcctcgcagTCTTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTTGAAAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtatgtgacttgcatttctctgactggaccttacagtgcatcctctcttg #### Wdr96_ID10349_22 --> 0 - 0 Original Alignment TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAG---AAGACTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca Alignment from CESAR TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAG---AAGACTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca Alignment from Spaln_aa2Genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAA---AAGAAGACTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca Alignment from Spaln_nt2Genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAGA---CTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca Alignment from Pairagon TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAG---AAGACTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca Alignment from Exonerate_protein2genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAA---AAGAAGACTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca Alignment from Exonerate_coding2genome TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAA---AAGAAGACTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca Alignment from GeneWise TGTTTTCATATACCCTATGTGGTTGACAACTTTCCCATGAAAGAGCGCACGGAAGAGGAGCTACAGGAGTTGAGTAAAGTTATGCAGCAAAAGAAG---ACTGAGATTGAGTGTCTTAAG agcccatttacataaagttaaggctggcctgactcaatctcccttcaaagCGTTTTCATATTCCTTATGTGGTCGATAATCTTCCCATGAAAGAGCGAACAGAGGAGGAGCTGCAGGAGTTGAGTAAGGTTATGCAACAAAAGAAAAAAACTGAGATTGAGTGTCTTAAGgtgagtgcacttgaacacatgtgtttgtatttgaggtgtgagagagagca #### Wdr96_ID10351_20 --> 0 - 0 Original Alignment ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac Alignment from CESAR ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac Alignment from Spaln_aa2Genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac Alignment from Spaln_nt2Genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac Alignment from Pairagon ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac Alignment from Exonerate_protein2genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac Alignment from Exonerate_coding2genome ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac Alignment from GeneWise ATTGCAATGATGATGGAAGAGAATGAAAAGGTGGACATCATTGCAAAACTAGATGAACAGGAGTTTTGCCTGGACGCCGATGAGCTGGAAAGGCTTCATGATGAATGTGAGGAGGAAGTAGCGAAG attttttactgttcaagactttgtttacattctcatttcatcctttgcagATTGCAATGATGATGGAAGAGAATGACAAGGTTGACATTATTGCAAAGTTAGATGATCAGGAGTTCTGTCTGGATGCAGATGAACTGGAAAGGTTTCATGATGAATGTGAGGAGGAAGTTTCAAAGgtaaggaggttctcacactacactcctaaggaggttgcagcactcgagac #### Wdr96_ID10359_12 --> 1 - 1 Original Alignment gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tggggaataacagtcatattgtatgtctccatttttttttttaattttaggTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTggtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag Alignment from CESAR gTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTg tggggaataacagtcatattgtatgtctccatttttttttttaattttaggTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTggtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag Alignment from Spaln_aa2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggggaataacagtcatattgtatgtctccatttttttttttaattttagGTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTGgtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag Alignment from Spaln_nt2Genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggggaataacagtcatattgtatgtctccatttttttttttaattttagGTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTGgtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag Alignment from Pairagon GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggggaataacagtcatattgtatgtctccatttttttttttaattttagGTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTGgtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag Alignment from Exonerate_protein2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggggaataacagtcatattgtatgtctccatttttttttttaattttagGTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTGgtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag Alignment from Exonerate_coding2genome GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggggaataacagtcatattgtatgtctccatttttttttttaattttagGTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTGgtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag Alignment from GeneWise GTATGACCAGCGAGGAATCTTTCTGTTAGTTGGTACAGAGGAAGGAAACATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTTCAAATTTTTGGATTCACTG tggggaataacagtcatattgtatgtctccatttttttttttaattttagGTATGACCAACGAGGAATCTTTCTATTAGTTGGTACAGAGGAGGGTAACATTTTTGTTATTGATGCCAGACCTGCAAAGTCACATCAAATTTTTGGGTTCACTGgtagattgtgggaggtcggccagttcatgttaattatcatagagtttaag #### Wdr96_ID10363_8 --> 0 - 0 Original Alignment GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa Alignment from CESAR GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa Alignment from Spaln_aa2Genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa Alignment from Spaln_nt2Genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa Alignment from Pairagon GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa Alignment from Exonerate_protein2genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa Alignment from Exonerate_coding2genome GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa Alignment from GeneWise GATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTCGAGTTTGATGGGCCGGTGACACATCTGGTGTTCTCCCCCAGTTACAAAATGTTACTGATTCAAACAGACAAG tctatgtagtcaagctacaccacttcttttgtttgctggcctttttcaagCATGGTGTGATATACTCCTTCATCATCAAGGATTCAAAGTACCAAGTGAAGACCTTTCTTGACTTTGATGGGCCAGTGTTACATCTTGTGTTCTCCCCTAGTTATAAAATGCTACTGATTCTCACAGATAAGgtgagtacttgttggatgtcaacttttgggcactgtttgcgcctggaaaa #### Wdr96_ID10368_3 --> 2 - 2 Original Alignment gtGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCtg taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccaggtGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCtggcaagttgatctttttaactcaaccaccatctagttagtgtttcgcgcca Alignment from CESAR gtGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCtg taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccaggtGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCtggcaagttgatctttttaactcaaccaccatctagttagtgtttcgcgcca Alignment from Spaln_aa2Genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccagGTGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCTGgcaagttgatctttttaactcaaccaccatctagttagtgtttcgcgcca Alignment from Spaln_nt2Genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccagGTGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCTGgcaagttgatctttttaactcaaccaccatctagttagtgtttcgcgcca Alignment from Pairagon GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccagGTGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCTGgcaagttgatctttttaactcaaccaccatctagttagtgtttcgcgcca Alignment from Exonerate_protein2genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccagGTGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCTGgcaagttgatctttttaactcaaccaccatctagttagtgtttcgcgcca Alignment from Exonerate_coding2genome GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTG taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccagGTGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCTGgcaagttgatctttttaactcaaccaccatctagttagtgtttcgcgcca Alignment from GeneWise GTGACATCCTCCTGGACTACACTCTACTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTCCCAGAGTTTGAGCTGGCCCTCTGG-------------------------------- taagttgtgaggacactctacgaaaaactaatgtaatgattgattcccagGTGACATCCTGCTGGACTACACTCTACTATGTTTCAGTTACTGTGGCACCTTCCTGGCAAGTTACTCATCCCTCCCAGAGTTTGACTTAGCTCCCTGGCAAGTTGATCTTTTTAACTCAACCACCATCTAgttagtgtttcgcgcca #### Xpnpep1_ID11138_17 --> 2 - 0 Original Alignment agCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagagCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc Alignment from CESAR agCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagagCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc Alignment from Spaln_aa2Genome AGCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagAGCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc Alignment from Spaln_nt2Genome AGCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagAGCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc Alignment from Pairagon AGCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagAGCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc Alignment from Exonerate_protein2genome AGCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagAGCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc Alignment from Exonerate_coding2genome AGCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagAGCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc Alignment from GeneWise AGCCAGGGTATTACGAAGACGGGGCGTTTGGGATCCGCATTGAGAATGTTGTTCTGGTGGTCCCAGCAAAAACCAAG cttcatcagtgtatgtaggggtgcctctaacagccactctcttcctccagAGCCAGGGTATTTTGAGGATGGGGCATTTGGGATCCGCATTGAGAATGTTGTTCTAGTGGTCCCACCAAAAACTAAGgtaagtatacaaatctgcatcaaaatgcttgactctgtttgcatataggc #### Xpnpep1_ID11139_16 --> 2 - 1 Original Alignment gcCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAG------------CCCTTGGAAGCGGGCATGATCGTCACTGATg agtgataagattcctcagcatttctattctttctttttttccttttttaggaCATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAGCAACTTTAGAAGCA---------ATTACTGATggtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt Alignment from CESAR gcCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATg agtgataagattcctcagcatttctattctttctttttttccttttttaggaCATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAGCAACTTTAGAAGCAATTACTGATggtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt Alignment from Spaln_aa2Genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGC---ATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG agtgataagattcctcagcatttctattctttctttttttccttttttagGACATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAGCAACTTTAGAAGCAATTACTGATGgtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt Alignment from Spaln_nt2Genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCG---TCACTGATG agtgataagattcctcagcatttctattctttctttttttccttttttagGACATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAGCAACTTTAGAAGCAATTACTGATGgtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt Alignment from Pairagon GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCA---TCAGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATGATCGTC----------------ACTGATG agtgataagattcctcagcatttctattctttctttttttccttttttagGACATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAG-------------CAACTTTAGAAGCAATTACTGATGgtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt Alignment from Exonerate_protein2genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG agtgataagattcctcagcatttctattctttctttttttccttttttagGACATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAGCAACTTTAGAAGCAATTACTGATGgtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt Alignment from Exonerate_coding2genome GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG agtgataagattcctcagcatttctattctttctttttttccttttttagGACATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAGCAACTTTAGAAGCAATTACTGATGgtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt Alignment from GeneWise GCCACCTTCTGGACTCCTTTGCCCGGTCAGCCTTGTGGGATTCTGGTCTGGATTACCTGCATGGAACAGGACATGGCGTTGGGTCCTTTTTGAATGTTCACGAGGGGCCCTGTGGCATC---AGTTATAAAACATTCTCCGATGAGCCCTTGGAAGCGGGCATG---ATCGTCACTGATG agtgataagattcctcagcatttctattctttctttttttccttttttagGACATCTCCTGGACTCCTTTGCCTGGTCTGCCTTGTGGGATTCTGGACTGGACTATCTACATGGAACAGGGCATGGCATCGGATCATTTTTGAATGTTCATGAGGGGCCTTGTGGCATTGTTAGTTATAAAACTCTCTCTGACAAACCTTTAGAAGCAACTTTAGAAGCAATTACTGATGgtacatatctgtttgctgtgggtgagggcctccttttgttatgggcagtt #### Xpnpep1_ID11142_14 --> 1 - 0 Original Alignment gGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcaggGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca Alignment from CESAR gGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcaggGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca Alignment from Spaln_aa2Genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcagGGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca Alignment from Spaln_nt2Genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcagGGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca Alignment from Pairagon GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcagGGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca Alignment from Exonerate_protein2genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcagGGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca Alignment from Exonerate_coding2genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcagGGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca Alignment from GeneWise GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggaaaaaggatatttcccttctctttcttacatcagGGATGGAACCACAGGCGTAACCCAGACCACACATTCTGGGACACCCACTGCGTATGAGAAGgtacagagatgtgaaattactgcctgctttccatccccccagggatggca #### Xpnpep1_ID11148_8 --> 1 - 0 Original Alignment gCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtaggCTATTCATTGATGGGGATCGTGTC---GCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca Alignment from CESAR gCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtaggCTATTCATTGATGGGGATCGTGTC---GCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca Alignment from Spaln_aa2Genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtagGCTATTCATTGATGGGGATCGTGTC---GCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca Alignment from Spaln_nt2Genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtagGCTATTCATTGATGGGGATCGTGT---CGCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCT------------TGCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca Alignment from Pairagon GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtagGCTATTCATTGATGGGGATCGTGT---CGCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCT------------TGCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca Alignment from Exonerate_protein2genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtagGCTATTCATTGATGGGGATCGTGTC---GCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca Alignment from Exonerate_coding2genome GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtagGCTATTCATTGATGGGGATCGTGTC---GCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca Alignment from GeneWise GCTCTTCATTGACGGGGACCGCGTCGACGCGCCGGGCGTGAAGCAGCACCTGCTGCTTGACTTGGGCCTGGAGGCGGAATACAGAATCCAGGTCCTGCCATACAAGTCCATCCTGAGTGAGCTCAAGGCCCTGTGTGCTGACCTGTCCCCGAGGGAGAAAGTGTGGGTCAGTGACAAGGCCAGCTACGCTGTGAGCGAGGCCATCCCCAAG ctctgctcatgtgccttcctttgcagagcctctctcgtgtgtttatgtagGCTATTCATTGATGGGGATCGTGTC---GCACCAGGTGTGAAGCAACACCTACTAGTTGACTTGGGTTTGGAGGCAGAATACAGGATCCAGGTCCTGCCATACAAGTCCATACTGAGTGAGCTT------------GCTGACTCGTCCCCTAGGGAGAAAGTGTGGGTCAGCGGAAAGTCCAGCTATGCTGTGAGTGAAGCCATTCCTAAGgtactgagccttccagtaaatgcatgttgtttgaggggcactggaaaaca #### Xpnpep1_ID11149_7 --> 2 - 2 Original Alignment ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat taattggtagccaattggaatctattttccttgtctgttgtacttctcagggCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCatgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat Alignment from CESAR ggCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCat taattggtagccaattggaatctattttccttgtctgttgtacttctcagggCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCatgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat Alignment from Spaln_aa2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT taattggtagccaattggaatctattttccttgtctgttgtacttctcagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCATgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat Alignment from Spaln_nt2Genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT taattggtagccaattggaatctattttccttgtctgttgtacttctcagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCATgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat Alignment from Pairagon GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT taattggtagccaattggaatctattttccttgtctgttgtacttctcagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCATgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat Alignment from Exonerate_protein2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT taattggtagccaattggaatctattttccttgtctgttgtacttctcagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCATgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat Alignment from Exonerate_coding2genome GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT taattggtagccaattggaatctattttccttgtctgttgtacttctcagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCATgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat Alignment from GeneWise GGCTGTTCAATCTCCGCGGGTCAGATGTGGAACACAATCCTGTGTTTTTCTCCTATGCGATCGTAGGCCTAGAGACGATCAT taattggtagccaattggaatctattttccttgtctgttgtacttctcagGGCTGTTCAACCTCCGTGGATCAGATGTGGAACACAATCCTGTGTTTTTTTCCTATGCAATTGTAGGCCTGGAGACAATCATgtaagcgctcacttgcatccagggtaccctctgcctcacctcacaattat #### Xpnpep1_ID11153_4 --> 2 - 1 Original Alignment gtCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAg agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcaggaCTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAggtatgggacctggccctttacagccatctgagacttcccttagtatgttt Alignment from CESAR gtCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAg agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcaggaCTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAggtatgggacctggccctttacagccatctgagacttcccttagtatgttt Alignment from Spaln_aa2Genome GTCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAG agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcagGACTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAGgtatgggacctggccctttacagccatctgagacttcccttagtatgttt Alignment from Spaln_nt2Genome GTCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAG agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcagGACTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAGgtatgggacctggccctttacagccatctgagacttcccttagtatgttt Alignment from Pairagon GTCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAG agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcagGACTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAGgtatgggacctggccctttacagccatctgagacttcccttagtatgttt Alignment from Exonerate_protein2genome GTCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAG agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcagGACTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAGgtatgggacctggccctttacagccatctgagacttcccttagtatgttt Alignment from Exonerate_coding2genome GTCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAG agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcagGACTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAGgtatgggacctggccctttacagccatctgagacttcccttagtatgttt Alignment from GeneWise GTCTGAAAGACACACCAACTCAGGAGGACTGGCTGGTGAGTGTGCTTCCAGAAGGATCCAGGGTTGGTGTGGACCCCCTCATCATTCCCACAG agtcttgattgtgtgtgtgaggggtaagccacatctttctgtgtctgcagGACTGAAAGACACACCTACCCAGGAGGACTGGCTTGTAAGTGTGCTTCCAGAAGGAGCCAGGGTTGGGGTGGACCCCCTTATCATTCCCACAGgtatgggacctggccctttacagccatctgagacttcccttagtatgttt #### Yif1a_ID832_4 --> 0 - 1 Original Alignment AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAagtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg Alignment from CESAR AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCa gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAagtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg Alignment from Spaln_aa2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg Alignment from Spaln_nt2Genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg Alignment from Pairagon AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg Alignment from Exonerate_protein2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg Alignment from Exonerate_coding2genome AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg Alignment from GeneWise AACTGGAAAATGCAATACAGCCATGATGTGCCTCTGCCCCCGCGGAAAGATCTCAATGCCCCTGACCTCTATATCCCCA gaggcagattattttattgctcttattgcagcatgctgttttcattttagAACTGGAAAATGCAGTATAGCCATGATGTGCCTCTACCCCCACGGAAAGATCTGAATACCCCTGACCTTTATATCCCAAgtaagttggtgatgtacagtcaacctccacctctgtacttagcaacaatg #### Zdhhc16_ID8347_4 --> 1 - 1 Original Alignment gTGTGTGCTGAAGATGGATCATCACTGCc gattaccatataatcccaagaagctcaatcctggactccttctctttcaggTGTGTGTTGAAGATGGATCATCACTGTcgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc Alignment from CESAR gTGTGTGCTGAAGATGGATCATCACTGCc gattaccatataatcccaagaagctcaatcctggactccttctctttcaggTGTGTGTTGAAGATGGATCATCACTGTcgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc Alignment from Spaln_aa2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatataatcccaagaagctcaatcctggactccttctctttcagGTGTGTGTTGAAGATGGATCATCACTGTCgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc Alignment from Spaln_nt2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatataatcccaagaagctcaatcctggactccttctctttcagGTGTGTGTTGAAGATGGATCATCACTGTCgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc Alignment from Pairagon GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatataatcccaagaagctcaatcctggactccttctctttcagGTGTGTGTTGAAGATGGATCATCACTGTCgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc Alignment from Exonerate_protein2genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatataatcccaagaagctcaatcctggactccttctctttcagGTGTGTGTTGAAGATGGATCATCACTGTCgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc Alignment from Exonerate_coding2genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatataatcccaagaagctcaatcctggactccttctctttcagGTGTGTGTTGAAGATGGATCATCACTGTCgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc Alignment from GeneWise GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatataatcccaagaagctcaatcctggactccttctctttcagGTGTGTGTTGAAGATGGATCATCACTGTCgtactgactgtagtgtttccgtatcctcattcactagtgtcttgtgactc #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcacagccccgagagtttcaggttgaataattttaaatctttgcagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgagtgttggaggcactgcatgattgtgtggagaaatggtcacaggtat #### Zdhhc6_ID11624_5 --> 0 - 0 Original Alignment ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg Alignment from CESAR ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg Alignment from Spaln_aa2Genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg Alignment from Spaln_nt2Genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg Alignment from Pairagon ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg Alignment from Exonerate_protein2genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg Alignment from Exonerate_coding2genome ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg Alignment from GeneWise ATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGATTGAAGAAAAG cccaagcctaaacattatttttggagtcccaacaaaatgcttctttgtagATAAAAATTATTCTCAGAAACAAAACTTCTATTGAATCATGGGTTGAAGAAAAGgtgagtacattcccacgaaataatgatcctgaatgctacctcatgatatg #### Zdhhc6_ID11626_3 --> 1 - 0 Original Alignment aTGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccaggTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag Alignment from CESAR aTGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccaggTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag Alignment from Spaln_aa2Genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccagGTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag Alignment from Spaln_nt2Genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccagGTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag Alignment from Pairagon ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccagGTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag Alignment from Exonerate_protein2genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccagGTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag Alignment from Exonerate_coding2genome ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccagGTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag Alignment from GeneWise ATGTGTAATGAAGATGGACCACCACTGCCCCTGGATCAACAACTGCTGTGGTCACCAGAACCACGCCTCGTTCACGCTCTTCCTCCTGTTGGCCCCTCTGGGCTGCACTCATGCTGCTTTCATCTTCGTGATGACAATGTACACACAGCTTTATAATCGG ccactcaacttatttatgggaacccctccttttgcccctgccctgcccagGTGTGTAATGAAGATGGATCACCACTGCCCATGGATCAACAACTGTTGTGGCCACCAGAACCATGCCTCCTTCACACTTTTCCTACTGTTGGCCCCTTTGGGCTGTACTCATGCTGCTTTCATCTTTGTGATGACTATGTACACACAGCTGTATAATCGGgtaagaaacctttaagagcttttttagagtcaacaacagtgtccattcag #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg #### Zfp91_ID3458_8 --> 1 - 0 Original Alignment aAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgttgcaggAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat Alignment from CESAR aAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgttgcaggAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat Alignment from Spaln_aa2Genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgttgcagGAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat Alignment from Spaln_nt2Genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgttgcagGAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat Alignment from Pairagon AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgttgcagGAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat Alignment from Exonerate_protein2genome AAGGAGAAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgTTGCAGGAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat Alignment from Exonerate_coding2genome AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgttgcagGAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat Alignment from GeneWise AAAAAAGCCTCCAATCCAATATGTCCGTTGTGAGATGGAAGGATGTGGAACTGTTCTTGCTCACCCTCGCTATTTGCAG tgggtatggacatccattgctccccccttgtccttgcctctttgttgcagGAAAAAGCCTCCAATCAAGTATGTTCGTTGCGAGATGGAAGGATGTGGTTCTGTTCTTGCTCATCCTCATTATCTCCAGgtgtgtagaatacaggacagtctttctagagtatccatttctttccatat #### Zfp91_ID3460_6 --> 1 - 2 Original Alignment gGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGaa actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctaggGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGaagtaaggaggacaaattactagtagtggagactgcccattcaacagatagg Alignment from CESAR gGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGaa actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctaggGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGaagtaaggaggacaaattactagtagtggagactgcccattcaacagatagg Alignment from Spaln_aa2Genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctagGGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGAAgtaaggaggacaaattactagtagtggagactgcccattcaacagatagg Alignment from Spaln_nt2Genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctagGGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGA---AAATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGAAgtaaggaggacaaattactagtagtggagactgcccattcaacagatagg Alignment from Pairagon GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctagGGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGA---AAATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGAAgtaaggaggacaaattactagtagtggagactgcccattcaacagatagg Alignment from Exonerate_protein2genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAAGAGAGGGAGAAGGCGAAAAGATGACAAAAGTCCGCGGTTACCCAA actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctagGGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGAAGTAAGGAGGACAAATTACTAGTAGTGGAGACTGCCCATTCAACAGatagg Alignment from Exonerate_coding2genome GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctagGGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGAAgtaaggaggacaaattactagtagtggagactgcccattcaacagatagg Alignment from GeneWise GGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTGAAAGAAGAGAAAGAAAAGAAAGAAATTAAAGTGGAAGTAGAAGTAGAGGTGAAAGAAGAAGAGAATGAAATTAGGGAAGATGAGGAGCCTCCCAGGAA actaccgttaagccaaagtgacttatatttcttgtcttgtcctgccctagGGGAACCCCAAAACCACGGAGGAAATCTGGAAAAGTCAAGGAGGAAAAGGAAAAGAAA---ATTAAAGTGGAAGTTGAAGTAGAGGTGAAAGAAGAAGACAATGAAATTAGGGAAGATGAGGAGCCCCCCAGGAAgtaaggaggacaaattactagtagtggagactgcccattcaacagatagg #### Zp1_ID3062_10 --> 0 - 1 Original Alignment GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaagtaaaagggactgtcttagggtattaactttccttatggttacatt Alignment from CESAR GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaagtaaaagggactgtcttagggtattaactttccttatggttacatt Alignment from Spaln_aa2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagtaaaagggactgtcttagggtattaactttccttatggttacatt Alignment from Spaln_nt2Genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagtaaaagggactgtcttagggtattaactttccttatggttacatt Alignment from Pairagon GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagtaaaagggactgtcttagggtattaactttccttatggttacatt Alignment from Exonerate_protein2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagtaaaagggactgtcttagggtattaactttccttatggttacatt Alignment from Exonerate_coding2genome GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagtaaaagggactgtcttagggtattaactttccttatggttacatt Alignment from GeneWise GTCTATTTCTTCTGTAGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA ttgacactctctctcaacctaccgttcccttgcctatccccactccccagATCTATTTCTTCTGTAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaagtaaaagggactgtcttagggtattaactttccttatggttacatt #### Zp1_ID3063_9 --> 1 - 0 Original Alignment gTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagaTGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag Alignment from CESAR gTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagaTGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag Alignment from Spaln_aa2Genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagATGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag Alignment from Spaln_nt2Genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagATGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag Alignment from Pairagon GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagATGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag Alignment from Exonerate_protein2genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagATGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag Alignment from Exonerate_coding2genome GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagATGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag Alignment from GeneWise GTGTCCTTTCAAGGGTGACAACTACAGAACACAAGTAGTGGCCGCAGACAGGGAGGCGCTTCCCTTCTGGTCCCACTATCAGCGCTTCACCATCACCACCTTCATGCTCCTTGACTCCAGCTCCCAGAATGCCCTTAGGGGACAG accacagctatgggtccttgaaggggctcatcagcatttcacactttcagATGTCCTTTCAAGGGTGACAATTATAGAACACAAGTAGTGGCTGCAGACAGGGAAGCAATTCCCTTCTGGTCCCATTCTCAGTATTTCACTATTACCACCTTCATGCTTCTTGATGCTAGCTCCCAGAATGCTCTCAGGGGCCAAgtgagtagcacttctttaaaagcacttcttctttcctccaaccccagaag #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGA---------GGCTGGGTCTGGCCA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGA---------GGCTGGGTCTGGCCATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata ####