#### 1700017D01Rik_ID3124_4 --> 0 - 0 Original Alignment CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga Alignment from CESAR CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga Alignment from Spaln_aa2Genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga Alignment from Spaln_nt2Genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga Alignment from Pairagon CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga Alignment from Exonerate_protein2genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga Alignment from Exonerate_coding2genome CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga Alignment from GeneWise CATATGTTTGCAATTATAACAAACATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATCAATAGGAACTGAATACATTTGGTCAAAT atgttctgatttgtatagtctatttaattaacaagagctctgttgtgcagCACATGTTCGCAATCATAATAAACATCATAAGTATCTTTGTGGCTATCTTTGGTTTAATTCTACTTGGATATGAATTCCCAATCTTTGAATCAATAGGGACTGAGTATATTTGGTCCAATgtgagtggtagaaggatcttgcttggctatcctacaagttaaatacttga #### 1700028P14Rik_ID5185_4 --> 1 - 2 Original Alignment gGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcaggGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAAccgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc Alignment from CESAR gGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAAcc catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcaggGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAAccgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc Alignment from Spaln_aa2Genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcagGGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAACCgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc Alignment from Spaln_nt2Genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcagGGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAACCgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc Alignment from Pairagon GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcagGGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAACCgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc Alignment from Exonerate_protein2genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcagGGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAACCgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc Alignment from Exonerate_coding2genome GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcagGGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAACCgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc Alignment from GeneWise GGACCCTGAATTGCCTCCCACAGGCTTTCGGGATGTTCCTATGGAATCCCCACCAGATCCGAGAAAACC catgagagtcatcatgtccaaatcatttcagactcttgtctctgtctcagGGATCCTGAGTTGCCTCCTACTGGCTTTCAAGATGTGCCAATGGGATCACCACCAGATCCAAGGAAACCgtgaggtgctgctagacaatggcagaatatgcattgcggtctaatgtgcc #### 1700055N04Rik_ID229_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg ccttctatacctcaatcccatcctgactctttttcttgccattgggacaggaAGCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAAGT------GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTggtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg ccttctatacctcaatcccatcctgactctttttcttgccattgggacaggaAGCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAAGT------GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTggtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG ccttctatacctcaatcccatcctgactctttttcttgccattgggacagGAAGCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAAGT------GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTGgtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG ccttctatacctcaatcccatcctgactctttttcttgccattgggacagGAAGCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAA-----GT-GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTGgtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG ccttctatacctcaatcccatcctgactctttttcttgccattgggacagGAAGCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAAGT------GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTGgtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG ccttctatacctcaatcccatcctgactctttttcttgccattgggacagGAAGCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAAGT------GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTGgtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG ccttctatacctcaatcccatcctgactctttttcttgccattgggacagGAAGCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAAGT------GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTGgtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat Alignment from GeneWise TCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCAGTTGGTGCCTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG ccttctatacctcaatcccatcctgactctttttcttgccattgggacaggaagCCCTCGTGTGGGTAAGATTGTCATGCCAGCTGCAGCTAAACAGTTGACACTAATCACCCTGGAGCTTGGGGGTAAGAACCCGTCCTATGTAGATGACAACTGCGATCCTCAAACAGTGGCTAACCGAGTCACCTGGCTGTGCTATTTCAATGCTGGCCAAAGT------GCGCCTGATTATATTCTGTGTAGTCAGGAAATGCAAGAGCAGTTGGCACCTGCGTTGGAAAATGCCATAATGCATTCCTATGGGGATAACCCACAAACATCACCCAATTTAGGGAGGATCATCAACCAAAAGCATTTCAGGAGGCTTCAGGGATGGCTGGGCTGTGGCCGAGTAGCAATTGGTGGTCAGAGTGAGGATGGGGAGCGCTACATTGgtaagtctcctcctgaccctggcagaccaccctttttgtgggcctgcaat #### 1700123I01Rik_ID1495_7 --> 1 - 0 Original Alignment gGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatataggGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata Alignment from CESAR gGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatataggGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata Alignment from Spaln_aa2Genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatatagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata Alignment from Spaln_nt2Genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatatagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata Alignment from Pairagon GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatatagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata Alignment from Exonerate_protein2genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatatagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata Alignment from Exonerate_coding2genome GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatatagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata Alignment from GeneWise GGCCAAGATGGAGACTTCTAGTGAAGCTTCCAGCAACAAGAAGCCTCTGAAGGAGAGCAAGAGG gtgatggcactaccacagtagccctattccattttctattgtcaatatagGGCCAAGATGGAGACTTCCAGTGAATCTTCCAGCAACAAAAAGCCCCTGAAGGAGAGCAAAAGAgtaagcaccaatactgggagatttggcattatggggagcctgcttgtata #### 1700123I01Rik_ID1499_9 --> 2 - 2 Original Alignment atGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAag acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagatGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCG---------ATGGGGTTCCTAaggtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa Alignment from CESAR atGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAag acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagatGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCG---------ATGGGGTTCCTAaggtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa Alignment from Spaln_aa2Genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagATGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCG---------ATGGGGTTCCTAAGgtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa Alignment from Spaln_nt2Genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagATGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCGA---------TGGGGTTCCTAAGgtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa Alignment from Pairagon ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGGGTTTCTAAG acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagATGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCGA---------TGGGGTTCCTAAGgtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa Alignment from Exonerate_protein2genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTGGG acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagATGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCGATGGGGTTCCTAAGgtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa Alignment from Exonerate_coding2genome ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTG acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagATGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCGATGGGGTTCCTAaggtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa Alignment from GeneWise ATGCTGCGTTGGGGCATGGCCTGCAAGGGTTGGTTGTCCCTCCACTGCAACATAGCAGTCCACCACCCCCGAAAGAGCCAGGAGCCAGAGGCTTCTTG acgccagaatatgtcagtgtctttcgcctcctctccttattcctttgcagATGCTGCATTGGGGCATTGGTTGCAAGGTCTGGTGGTCCCCCCGTTGCAACATAGCAGTCCTCCGCCCCCAAAGGAGCCTGGAGCGATGGGGTTCCTAaggtaagagcacaggcaacagcagtcattggtcttgtagaactttggagtaa #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGgcgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGgcgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC G agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactagA Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC agtaggtgagaagccgcctggcatggatgtaaaccatcctttcttcctagGAGCTAAGAAAGAAGTTGTCTAAGCGTCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAACACCACCTCAAGAAGCGGGCgtaagcacagagctacttcttactagatatggtgaatctttggtactaga #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from CESAR CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Spaln_aa2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Spaln_nt2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Pairagon CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact Alignment from GeneWise CTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accatatagaggcgggatcataatagcttcctcccttctgttcctcccagCTGCTGGGGCAGGCAGCTCGAAACATGGTACTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtacgtagctattatttcatcatatgtgtaaagatctttgggtgtggact #### 2700081O15Rik_ID2153_3 --> 2 - 1 Original Alignment gcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAg gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcaggcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTGTCTGAGCTGACTCAATCTTCACCAggtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag Alignment from CESAR gcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAg gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcaggcAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTGTCTGAGCTGACTCAATCTTCACCAggtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag Alignment from Spaln_aa2Genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTGTCTGAGCTGACTCAATCTTCACCAGgtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag Alignment from Spaln_nt2Genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTGTCTGAGCTGACTCAATCTTCACCAGgtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag Alignment from Pairagon GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTGTCTGAGCTGACTCAATCTTCACCAGgtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag Alignment from Exonerate_protein2genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTGTCTGAGCTGACTCAATCTTCACCAGgtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag Alignment from Exonerate_coding2genome GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCC-AGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCT gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGC-CCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTgtctgagctgactcaatcttcaccaggtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag Alignment from GeneWise GCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGGCGAGGGGTCCGAGGGGGCTCAGTGGCACCTCGGCGCCGGCGCCTCGCAGCCTCCCGAAGGGCTGGGGGCAGCAGGGGGCTGGGGGCCCGGCGCCTGGAGCGGAGGCTGAAGGAGTCACTGCAGAACTGGTTCCGGGCTGAGTGTCTCATGGACTACGACCCACGGGGGAATCGGCTGGTGTGCATGGCCTGCGGCCGGGCACTGCCCAGCCTGCACTTGGACGACATCCGTGCTCACGTGCTGGAAGTGCACCCCAGCTCCCTAGGGCTCAGTGGCCCCCAGCGCAGTGCCCTGCTGCAGGCCTGGGGTGACCAGCCTGAGGCTCTGTCCGAGCTCACCCAGCCCTCACCAG gatccctaagtgtggtggagaatcagttctgcttcgttctctttccgcagGCAAAGCCCCAGCTGGTGGGGGCTGCCGGCGCCAGCGTCGAGGGGTTCGAGGGGGTTCAGTGGCACCTCGGCGTCGACGCCTTGGAGCCTCCCGAAGGGCTGGAGGCAGCAGGGGGTTGGGGGCGCGGCGGTTGGAGCGGAGATTGAAGGAGTCACTACAGAACTGGTTCCGGGCTGAGTGTCTGATGGACTATGACCCACGGGGGAATCGGCTAGTGTGCATGGCCTGTGGCCGCGCACTGCCCAGCCTGCATCTGGATGACATACATGCTCATGTCTTGGAAGTGCATCCCAGCTCCCTTGGGCTCAGTGGCCCCCAGCGGAGTGCCCTCCTGCAGGCCTGGGGTGATCAACCTGAGGCTCTGTCTGAGCTGACTCAATCTTCACCAGgtaagtggtgactgcacttccaatggaaccaggtttatttaactggggag #### 4430402I18Rik_ID6182_8 --> 2 - 0 Original Alignment caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagcaCCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat Alignment from CESAR caTCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagcaCCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat Alignment from Spaln_aa2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat Alignment from Spaln_nt2Genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat Alignment from Pairagon CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat Alignment from Exonerate_protein2genome CATCTTCTCTTGACAGCCTGGAGGCGAACATAAAG aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagCACCTTCACTTGATAGCCTTGAGGCAAACATAAAGgtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat Alignment from Exonerate_coding2genome aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagcaccttcacttgatagccttgaggcaaacataaaggtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat Alignment from GeneWise aactgctgcactgcgtagaggctgaccgcgccaactctctcctcttccagcaccttcacttgatagccttgaggcaaacataaaggtaagtacccaagcagaacacttaattcatgacagcacttaattcaggat #### 4430402I18Rik_ID6184_6 --> 0 - 0 Original Alignment GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTC------TCCCATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACAG------TTACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATgtgagctcaagaaagaatctctgcgtgccccacactgatttccatttcaa Alignment from CESAR GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTC------TCCCATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACAG------TTACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATgtgagctcaagaaagaatctctgcgtgccccacactgatttccatttcaa Alignment from Spaln_aa2Genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTC------TCCCATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACAG------TTACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATgtgagctcaagaaagaatctctgcgtgccccacactgatttccatttcaa Alignment from Spaln_nt2Genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTC------TCCCATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACAGT------TACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATgtgagctcaagaaagaatctctgcgtgccccacactgatttccatttcaa Alignment from Pairagon GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTC------TCCCATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACA------GTTACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATgtgagctcaagaaagaatctctgcgtgccccacactgatttccatttcaa Alignment from Exonerate_protein2genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACATGTGGACAGTGGGAACCCATTTGGT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTC------TCCCATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACAG------TTACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATGTGAGCTCAAGAAAGAATCTCTGCgtgccccacactgatttccatttcaa Alignment from Exonerate_coding2genome GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTC------TCCCATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACAG------TTACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATgtgagctcaagaaagaatctctgcgtgccccacactgatttccatttcaa Alignment from GeneWise GAAGAAAGGTGTAGATTGGAAAGATCTGTCTCAAAATCTCACGGACAGAGAGTCCAGGCAACTAACAGGAAAAAGAAGCCAAAGGAAAAAGATTCTGACCAACTCCCCAAAGGGACACAGTCCCGGTTACCCTCCCCTCAACGTCTTCATCTCCATCGGCCGACTCAACGCAACCATGGGAAAAGCTTCAAGTTCCCGGGAGAAAGGAAACCTCCATTTGTGGTTAGACAT ttccccagtagtgtactctctttgtttaaaagctggtattgatctttaagGAAGAGAGATGTATATTGGAAAGATCAGTCTCC------CATGGACAAAGGGTCCAGGCAACTAACAGGACAAAGAAACCAAAGGAAAAGGATGCTGACCAACTCCCGAAGGGGACACAG------TTACCCTCCCCTCAACATCTTTGTCTTCACCAACCCACCCAGCACAACCAGGGGAAGAGATTTAAGTTCCCAGGGGAGAGGAAACCTCCCTTTGTAGTTAGACATgtgagctcaagaaagaatctctgcgtgccccacactgatttccatttcaa #### 4430402I18Rik_ID6188_2 --> 0 - 1 Original Alignment GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTGGAGagtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct Alignment from CESAR GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAa cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTGGAGagtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct Alignment from Spaln_aa2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTGGAGAgtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct Alignment from Spaln_nt2Genome GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTGGAGAgtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct Alignment from Pairagon GTATTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagGGATTTGAGAAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTGGAGAgtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct Alignment from Exonerate_protein2genome TTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagggaTTTGAGAAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTGGAGAgtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct Alignment from Exonerate_coding2genome TTTGAAGAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTAGAAA cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagggaTTTGAGAAGGCAATAGATCCTGGAGCTGTCGCAGAACTTTTGGAGAgtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct Alignment from GeneWise cactgaagtaggtatgtgcacatttcttctcacatagattttcttgacagggatttgagaaggcaatagatcctggagctgtcgcagaacttttggagagtgaggacttaggagaaaacataaaagactcctctgcaatctgccgttct #### 4930506M07Rik_ID12854_16 --> 2 - 2 Original Alignment gtCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTca tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcaggtCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCcagtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat Alignment from CESAR gtCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTca tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcaggtCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCcagtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat Alignment from Spaln_aa2Genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcagGTCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat Alignment from Spaln_nt2Genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcagGTCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat Alignment from Pairagon GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcagGTCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat Alignment from Exonerate_protein2genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcagGTCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat Alignment from Exonerate_coding2genome GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcagGTCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat Alignment from GeneWise GTCCTACCGGGATATTAGCCACCTCAGAGTCCAAGTCCATGCCAGTGTTGGGTTCTGTATCCAGTGTAACAAAATCAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAACCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACGAATCCCAAGGTTACCTTTCA tggatgatatcacaaaggatcatcgacctgtctgtccccctaccctgcagGTCCTACTGGGATATTAGCAACTTCAGAGTCCAAGTCGATGCCAGTGTTGTGTTCTGTATCCAGTGTGACAAAATCAGCTTTGAACAAGAAAACTCTGGAGGCAGAGTTCAACAATCCGTGTCCCCTAACACCTGAGCCAGGTGAAGGGCCCCATAAATTGGAAGGATGCATGAATCCAAAGGTTACATTCCAgtaacttaagtgttcaccttcattcaccataacgaggatgcctaaccaat #### 9130011E15Rik_ID9639_22 --> 2 - 2 Original Alignment tcCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCag ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagtcCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCaggtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag Alignment from CESAR tcCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCag ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagtcCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCaggtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag Alignment from Spaln_aa2Genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagTCCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCAGgtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag Alignment from Spaln_nt2Genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagTCCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCAGgtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag Alignment from Pairagon TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagTCCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCAGgtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag Alignment from Exonerate_protein2genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagTCCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCAGgtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag Alignment from Exonerate_coding2genome TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagTCCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCAGgtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag Alignment from GeneWise TCCTTCGGCTTTCCACCAACGCTGGCCAGTGGAAGGAAGCAGCAAGCAAGGTGACACACGCACTGGTGAATATCAG ctaagctgtgcatctctaggttttccaaggtgaccttagactctccacagTCCTTCGGCTTTCCACCAATGCTGGCCAGTGGAAGGAGGCAGCAAGTAAGGTGACACACGCACTCGTGAATATCAGgtgggttttggattcatagtgtctaaaaatacatctcctcattatgagag #### 9130011E15Rik_ID9640_21 --> 0 - 1 Original Alignment ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGggtacagctgtctttttttattcttatgatggcgggattccgtagggacag Alignment from CESAR ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGg tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGggtacagctgtctttttttattcttatgatggcgggattccgtagggacag Alignment from Spaln_aa2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtacagctgtctttttttattcttatgatggcgggattccgtagggacag Alignment from Spaln_nt2Genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtacagctgtctttttttattcttatgatggcgggattccgtagggacag Alignment from Pairagon ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtacagctgtctttttttattcttatgatggcgggattccgtagggacag Alignment from Exonerate_protein2genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtacagctgtctttttttattcttatgatggcgggattccgtagggacag Alignment from Exonerate_coding2genome ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtacagctgtctttttttattcttatgatggcgggattccgtagggacag Alignment from GeneWise ATTGTGAACCTATTTAACATGTTTATCACATACGGTGACACATTCCTGCCAACCCCCAGCAGCTACGATGAGCTTTACTATGAAATTATCCGCATGCACCAGAGCTTTGACAACCTCTACTCCATGG tataggtatagccatttgaagcctgggttaactattattttgatgattagATTGTGAACCTATTTAATATGTTTATCACATATGGTGACACATTCCTGCCAACCCCCGGCAGCTATGATGAGCTTTATTATGAAATTATCTGCATGCACCAGAGCTTTGACAACCTCTACTCAATGGgtacagctgtctttttttattcttatgatggcgggattccgtagggacag #### 9130011E15Rik_ID9658_14 --> 2 - 1 Original Alignment ttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAg atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAggtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg Alignment from CESAR ttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAg atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagttATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAggtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg Alignment from Spaln_aa2Genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg Alignment from Spaln_nt2Genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg Alignment from Pairagon TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg Alignment from Exonerate_protein2genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg Alignment from Exonerate_coding2genome TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg Alignment from GeneWise TTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGTATAGCTCAATTGTCATGCAGGACACGAAAG atccataaaatccatcttatatgcagagaaactttctttcgtgcacttagTTATAAGTTCTGTGGAACTCTCACTGGATGCAGATGTACAGACCAGTAATCTACTGATAACCTTCTTAAAGCATAGCTCAATTGTCATGCAGGACACGAAAGgtaagacatctgtagcagtgtcagatactctttctaggacagaacagtgg #### 9130011E15Rik_ID9663_13 --> 0 - 1 Original Alignment AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACg agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATggtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc Alignment from CESAR AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACg agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATggtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc Alignment from Spaln_aa2Genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATGgtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc Alignment from Spaln_nt2Genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATGgtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc Alignment from Pairagon AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATGgtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc Alignment from Exonerate_protein2genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATGgtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc Alignment from Exonerate_coding2genome AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATGgtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc Alignment from GeneWise AGCCATCCAGAAATGGGGTTGGTGACAGCCCCTGCCAGCCCTACTCCTACAACCCCAGCCACACCCCTTGGGACTACACCGCCCTCCTCTGACG agttcctgacaagcagacttcacgacttgtgccttctccgtgtttctcagAGCCATCCTAAAATGGGCCTAGTGACAGCCCCTGCCAGTCCTACTCCTACAACCCCAGCTACCCCCCTTGGAACTACACCCCCATCTTCTGATGgtaccaattacaaagtgtctttgactatgaaaaaagttttgtattttgcc #### 9130011E15Rik_ID9667_10 --> 1 - 0 Original Alignment gCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcaggCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg Alignment from CESAR gCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcaggCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg Alignment from Spaln_aa2Genome GCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcagGCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg Alignment from Spaln_nt2Genome GCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcagGCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg Alignment from Pairagon GCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcagGCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg Alignment from Exonerate_protein2genome GCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcagGCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg Alignment from Exonerate_coding2genome GCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcagGCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg Alignment from GeneWise GCAGTATAAAGACAAGGAAGAAGAACATCAGAGTGGGTTTTTTTCTGCTTTAACAAATATG ttgtgaactatgcctaatcatattcttaggcgtgggaatttattttgcagGCAGTATAGAGACAAGGAAGAAGAACATCAAAGTGGGTTTTTTTCTGCTTTAACTAATATGgtaaggctcatttgtaactttggctgtggctatctgggatgaggggtggg #### 9130011E15Rik_ID9674_7 --> 0 - 0 Original Alignment ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca Alignment from CESAR ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca Alignment from Spaln_aa2Genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca Alignment from Spaln_nt2Genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca Alignment from Pairagon ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca Alignment from Exonerate_protein2genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca Alignment from Exonerate_coding2genome ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca Alignment from GeneWise ATACTGTCCCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTCGTCCTCTTGGCTTTACTGGTAAATTACAGAAAATATGAG taatcacccagaagcaaaagcttgggtgccactcatgtctctctccacagATACTGTCTCATCCCCCAAGTCGTAGAGAGCATGGGTATGATGCTGTTGTCCTCTTGGCTTTGCTGGTAAATTACAGAAAATATGAGgtaagatgcacatgattgctcctagccacaatatgtcatggatttaggca #### A1cf_ID6641_3 --> 0 - 2 Original Alignment ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTcg aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTcggtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac Alignment from CESAR ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTcg aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTcggtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac Alignment from Spaln_aa2Genome ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCG aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCGgtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac Alignment from Spaln_nt2Genome ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCG aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCGgtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac Alignment from Pairagon ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCG aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCGgtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac Alignment from Exonerate_protein2genome ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCG aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCGgtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac Alignment from Exonerate_coding2genome ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCG aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCGgtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac Alignment from GeneWise ATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCG aagagcggtacgaaaagtggatcaatttgccggctcctggtgtctttcagATTGGTAAGATTTATGAAATGAGACTGATGATGGATTTTAATGGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAATAATTATGAAATTCGgtgagtctgagatctgctttataaaccaaacaggttattgatgttaaaac #### A1cf_ID6643_5 --> 2 - 1 Original Alignment gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg aaagccacaaaagtcagttcatctacagagatttttggttttgtttttaggaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAggtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta Alignment from CESAR gaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAg aaagccacaaaagtcagttcatctacagagatttttggttttgtttttaggaAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAggtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta Alignment from Spaln_aa2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagttcatctacagagatttttggttttgtttttagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAGgtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta Alignment from Spaln_nt2Genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagttcatctacagagatttttggttttgtttttagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAGgtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta Alignment from Pairagon GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagttcatctacagagatttttggttttgtttttagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAGgtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta Alignment from Exonerate_protein2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagttcatctacagagatttttggttttgtttttagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAGgtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta Alignment from Exonerate_coding2genome GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagttcatctacagagatttttggttttgtttttagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAGgtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta Alignment from GeneWise GAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGTACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAG aaagccacaaaagtcagttcatctacagagatttttggttttgtttttagGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGATTGGGCAGAGCCAGAGGTGAAAGTTGATGAGGACTCAATGTCATCTGTGAAAATCCTGTACATAAGGAATCTTATGCTGTCTACCTCAGAAGAAATGATTGAAAAGGAATTCAACAGTATCAAACCAGgtatgttcaacacaaaatcaatatcttatcagtggttaggctctctacta #### A1cf_ID6644_6 --> 2 - 0 Original Alignment gtGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcaggtGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca Alignment from CESAR gtGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcaggtGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca Alignment from Spaln_aa2Genome GTGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcagGTGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca Alignment from Spaln_nt2Genome GTGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcagGTGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca Alignment from Pairagon GTGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcagGTGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca Alignment from Exonerate_protein2genome GTGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcagGTGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca Alignment from Exonerate_coding2genome GTGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcagGTGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca Alignment from GeneWise GTGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATGGCAAG ctggccacattttgccagacgttgtgaaccaagtctcatttaatcctcagGTGCTGTGGAAAGAGTGAAGAAGATACGGGACTATGCTTTTGTGCACTTTAGCAACCGTCAAGATGCAGTTGAAGTCATGAAGGCTTTGAATGGCAAGgtgagttgagaaagatgaaagtccaaatcaatttcaatgattggtaatca #### A1cf_ID6647_8 --> 2 - 0 Original Alignment aaATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagaaATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGA---CGTGGGCGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGATAT---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc Alignment from CESAR aaATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagaaATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGA---CGTGGGCGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGATAT---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc Alignment from Spaln_aa2Genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagAAATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGACGTGGG---CGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGATAT---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc Alignment from Spaln_nt2Genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagAAATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGAC---GTGGGCGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGAT---ATGTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc Alignment from Pairagon AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagAAATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGAC---GTGGGCGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGAT---ATGTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc Alignment from Exonerate_protein2genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagAAATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGA---CGTGGGCGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGATAT---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc Alignment from Exonerate_coding2genome AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagAAATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGA---CGTGGGCGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGATAT---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc Alignment from GeneWise AAATTTACATGAATGTCCCTGTAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACACAGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGGATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAG aaatggttggtgtcagtaaaatgccttcctctcagagatactccttccagAAATTTATATGAATGTTCCTATAGGGGCAGCAGGGGTGAGAGGACGTGGG---CGTGGTTATCTGGCTCTCACAGGCCTGGGCCGAGGATAT---GTCAAAGGAGACAAAAGGGAAGATAAATTCTATGATCTTCTCCCCGGCATGGAACTCACTGTGATGAATACTGTTTCTTTGATACCACAAGGTATTAAGCTTGTACCTCAGgtaagttaaatgattccagggattgttaaattgggtccataaattgggcc #### A630007B06Rik_ID12184_13 --> 2 - 2 Original Alignment ggTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCaa tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagggTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCaagtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg Alignment from CESAR ggTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCaa tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagggTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCaagtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg Alignment from Spaln_aa2Genome GGTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCAA tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagGGTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCAAgtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg Alignment from Spaln_nt2Genome GGTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCAA tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagGGTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCAAgtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg Alignment from Pairagon GGTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCAA tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagGGTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCAAgtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg Alignment from Exonerate_protein2genome GGTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCAA tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagGGTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCAAgtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg Alignment from Exonerate_coding2genome GGTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCAA tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagGGTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCAAgtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg Alignment from GeneWise GGTCACTTAATGCTCGAATCAGTGCTGAAGACCGATCTCCAGAGAATACCAGCTCCTCGGTGGCTGTGGACAACTTCCCAGAAGTGGACAAAGCCATGCTGATTGAGAGGATAGTGAGGCTACAGAAAGCCCATGCCCGGAAGAATGAGAAAATAGAATTCATGGAGGACCACATCAAACAGCTGGTTGAAGAAATAAGAAAAAAAACCAA tttcacaagcgaaaccaacacattcatcctctctgtcctctcctctctagGGTCACTTAATGCTCAAATCAGTACTGAAGGCAGATCACCTGGGAATACCAGTTCTTCAGTAGCTGTGGACAATTTTCCGGAAGTGGGCAAAGCAATGTTGATAGAGAGAATAGTGAGCCTACAAAAAGTCCATGCCTGGAAGAATGAGAAAATAGAATTCATGGTTGACCGTATCAAACAACTTGTAGAAGAACTAAGAGAAAAGACCAAgtaaggattttagtggccaggtgaagggccaccatatggatggcctcagg #### A630007B06Rik_ID12188_9 --> 0 - 2 Original Alignment GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAag agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAaggtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc Alignment from CESAR GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAag agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAaggtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc Alignment from Spaln_aa2Genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc Alignment from Spaln_nt2Genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc Alignment from Pairagon GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc Alignment from Exonerate_protein2genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc Alignment from Exonerate_coding2genome GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc Alignment from GeneWise GCGAAATGTCTAGAAGATGAACGCTTAAGAACGGAAGATGAGTTATCAAAGTACAGGGAAATTATCAATCGACAGAAATCTGAAATTCAGAATTTACTGGACAAGGTGAAAATCACAGATCAGTTACATGAGCAGCTTCAAAG agcaagcacagtgaagcaaccacctaacttccttttctactttgggccagGCAAAATGTCTGGAAGACGAACGATTAAGGACAGAAGATGAGTTATCAAAGTACCGGGAAATTATCAATCGACAGAGATCCGAAATACAGAATTTACTGGACAAGGTGAAAATCACTGATCAGTTACATGAGCAGCTTCAAAGgtaagcagtaagtgctctgtactatgtgtgtaatattgtattgcgcaacc #### A630007B06Rik_ID12189_8 --> 0 - 0 Original Alignment ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg Alignment from CESAR ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg Alignment from Spaln_aa2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg Alignment from Spaln_nt2Genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg Alignment from Pairagon ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg Alignment from Exonerate_protein2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg Alignment from Exonerate_coding2genome ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg Alignment from GeneWise ATGCATCATGCCAAAATAAAGGAGCTAGAAGATCTAAAGAGGACATTTAAGGAGGGCATGGATGAGCTACGGACATTGAGAACGAAG accaaatgccatctacatcccttggcaaagattttgtccttctgctgtagATGCATCATGCCAAAATAAAGGAGCTGGAAGATCTCAAGAGGACATTTAAGGAGGGCATGGATGAATTGCAGACATTGAGAACGAAGgtgagaaatgggaacaaaggtaagcaaccagcgtccggtagatttctgtg #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca #### A630007B06Rik_ID12192_5 --> 0 - 0 Original Alignment GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact Alignment from CESAR GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact Alignment from Spaln_aa2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact Alignment from Spaln_nt2Genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGA---GAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAA---------GGACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact Alignment from Pairagon GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGA---GAATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAA---------GGACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact Alignment from Exonerate_protein2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact Alignment from Exonerate_coding2genome GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact Alignment from GeneWise GAAGGTGAAACAACTAGACTCATCAGAGAAATAGAGAAATTAAAGGAGGAGATGAATTCTCAAGTCATTAAAGTAAAGTGGGCGCAAAACAAGTTAAAAGCTGAAATGGACTCACACAAG tctttcggagataactctgaaaattgttataaccaagcttgtcattttagGAAGGTGAAATAACTAGACTCATTAGAGAGATAGAGAAATTAAAAGAAGAG---AATTCTCAAGTCATTAAAGTCAAGTGGGCACAGAACAAATTAAAG---------GACTCCCATAAGgtaaggcaggtagtcacaagtataaagaccagcagcttctgcagaacact #### A630007B06Rik_ID12195_2 --> 1 - 0 Original Alignment gTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcaggTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga Alignment from CESAR gTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcaggTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga Alignment from Spaln_aa2Genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga Alignment from Spaln_nt2Genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga Alignment from Pairagon GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga Alignment from Exonerate_protein2genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga Alignment from Exonerate_coding2genome GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga Alignment from GeneWise GTTAATTAAAGAAAATAAGAATCATCAGGAACTTATCTTAAACATTTGTTCAGAAAAAGACAGTTTAAGAGAAGAACTGAGAAAAAGGACAGAAACAGAGAAGCAGCATATGAACACAATAAAGCAG agaggtatccatttgcagataattcatatcttttctttttctctctgcagGTTAATTAAAGAAAATAAGAATCATCAGAAACTCATCTTAAACATCTGCTCAGAAAAAGACAGTTTGAGAGAAGAACTGAGAAAGAGGACTGAAACAGAGAAGCAACATATGAATACAATAAAGCAAgtgaggctacccagtttagattaagttattccatagactagccagaaaga #### Abcc2_ID8818_2 --> 0 - 0 Original Alignment AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG aataaatgaaatccaatgtgaacccatcgcactgagttctctcttttcagAATCTCTCATTATTAAAATGCCCAGAAGCCGACCTACCACGTTGTTCTAAGCAGACTGTTTTAGTCTGGATCGCACTGGGCTTTCTTTGGCTCTTAGCACCTTGGCAACTTTATAGAATATACAGGTCTAGATCGAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAAGAGgtaagttgaaattagtttctagctaccttgagcactactgaatcactctt Alignment from CESAR AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG aataaatgaaatccaatgtgaacccatcgcactgagttctctcttttcagAATCTCTCATTATTAAAATGCCCAGAAGCCGACCTACCACGTTGTTCTAAGCAGACTGTTTTAGTCTGGATCGCACTGGGCTTTCTTTGGCTCTTAGCACCTTGGCAACTTTATAGAATATACAGGTCTAGATCGAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAAGAGgtaagttgaaattagtttctagctaccttgagcactactgaatcactctt Alignment from Spaln_aa2Genome AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG aataaatgaaatccaatgtgaacccatcgcactgagttctctcttttcagAATCTCTCATTATTAAAATGCCCAGAAGCCGACCTACCACGTTGTTCTAAGCAGACTGTTTTAGTCTGGATCGCACTGGGCTTTCTTTGGCTCTTAGCACCTTGGCAACTTTATAGAATATACAGGTCTAGATCGAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAAGAGgtaagttgaaattagtttctagctaccttgagcactactgaatcactctt Alignment from Spaln_nt2Genome AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG aataaatgaaatccaatgtgaacccatcgcactgagttctctcttttcagAATCTCTCATTATTAAAATGCCCAGAAGCCGACCTACCACGTTGTTCTAAGCAGACTGTTTTAGTCTGGATCGCACTGGGCTTTCTTTGGCTCTTAGCACCTTGGCAACTTTATAGAATATACAGGTCTAGATCGAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAAGAGgtaagttgaaattagtttctagctaccttgagcactactgaatcactctt Alignment from Pairagon AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG aataaatgaaatccaatgtgaacccatcgcactgagttctctcttttcagAATCTCTCATTATTAAAATGCCCAGAAGCCGACCTACCACGTTGTTCTAAGCAGACTGTTTTAGTCTGGATCGCACTGGGCTTTCTTTGGCTCTTAGCACCTTGGCAACTTTATAGAATATACAGGTCTAGATCGAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAAGAGgtaagttgaaattagtttctagctaccttgagcactactgaatcactctt Alignment from Exonerate_protein2genome AATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG aataaatgaaatccaatgtgaacccatcgcactgagttctctcttttcagAATCTCTCATTATTAAAATGCCCAGAAGCCGACCTACCACGTTGTTCTAAGCAGACTGTTTTAGTCTGGATCGCACTGGGCTTTCTTTGGCTCTTAGCACCTTGGCAACTTTATAGAATATACAGGTCTAGATCGAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAAGAGgtaagttgaaattagtttctagctaccttgagcactactgaatcactctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACGAATTCTGCAACTCTACTTTTTGGAATCTCTCATTATTGAAAAGTCCGGAAGCCGACCTGCCTCTTTGTTTTGAACAAACTGTTCTTGTGTGGATTCCCTTGGGCTTTCTTTGGCTCTTGGCGCCTTGGCAACTTTACAGAATATACAGATCCAGGACCAAGAGATTTGCTATAACTAAATTCTACCTTGCCAAGCAG tgaacccatcgcactgagttctc------------------TCTTTTCAGAATCTCTCATTATTAAAATGCCCAGAAGCCGACCTACCACGTTGTTCTAAGCAGACTGTTTTAGTCTGGATCGCACTGGGCTTTCTTTGGCTCTTAGCACCTTGGCAACTTTATAGAATATACAGGTCTAGATCGAAGGGATTTGCTATAACCAAATTTTACCTTGCCAAAGAGgtaagttgaaattagtttctagctaccttgagcactactgaatcactctt #### Abcc2_ID8820_4 --> 0 - 0 Original Alignment CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggcagtgggagggctgaaaacgaagtgcccggcccactgtgtggccagCTTCTGGTACTGGTGATTCAGCATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCTATGTTCTGGATACACTCTCTATTATGTGGTATCTTTCAATTCCAGACCCTAATACGAGCACTGGTGCAGgtacatgggaaggggggacaacaaatctataaagtataaagatgccggtg Alignment from CESAR CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggcagtgggagggctgaaaacgaagtgcccggcccactgtgtggccagCTTCTGGTACTGGTGATTCAGCATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCTATGTTCTGGATACACTCTCTATTATGTGGTATCTTTCAATTCCAGACCCTAATACGAGCACTGGTGCAGgtacatgggaaggggggacaacaaatctataaagtataaagatgccggtg Alignment from Spaln_aa2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggcagtgggagggctgaaaacgaagtgcccggcccactgtgtggccagCTTCTGGTACTGGTGATTCAGCATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCTATGTTCTGGATACACTCTCTATTATGTGGTATCTTTCAATTCCAGACCCTAATACGAGCACTGGTGCAGgtacatgggaaggggggacaacaaatctataaagtataaagatgccggtg Alignment from Spaln_nt2Genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggcagtgggagggctgaaaacgaagtgcccggcccactgtgtggccagCTTCTGGTACTGGTGATTCAGCATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCTATGTTCTGGATACACTCTCTATTATGTGGTATCTTTCAATTCCAGACCCTAATACGAGCACTGGTGCAGgtacatgggaaggggggacaacaaatctataaagtataaagatgccggtg Alignment from Pairagon CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggcagtgggagggctgaaaacgaagtgcccggcccactgtgtggccagCTTCTGGTACTGGTGATTCAGCATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCTATGTTCTGGATACACTCTCTATTATGTGGTATCTTTCAATTCCAGACCCTAATACGAGCACTGGTGCAGgtacatgggaaggggggacaacaaatctataaagtataaagatgccggtg Alignment from Exonerate_protein2genome CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggcagtgggagggctgaaaacgaagtgcccggcccactgtgtggccagCTTCTGGTACTGGTGATTCAGCATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCTATGTTCTGGATACACTCTCTATTATGTGGTATCTTTCAATTCCAGACCCTAATACGAGCACTGGTGCAGgtacatgggaaggggggacaacaaatctataaagtataaagatgccggtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCTGGTGTTGGTGATCCAACACTGCAGGCAATGCTGTATACAGAAGAATTCTTGGTTCCTGTCCATGTTCTGGATTCTCTCTCTATTATGTGGCATATTCCAGTTTCAGACTCTGATACGAGCACTCCTGCAG ggggcagtgggagggctgaaaacgaagtgcccggcccactgtgtggccagCTTCTGGTACTGGTGATTCAGCATTGCAGGCAATGTTGTATACAGAAGAATTCATGGTTCTTGTCTATGTTCTGGATACACTCTCTATTATGTGGTATCTTTCAATTCCAGACCCTAATACGAGCACTGGTGCAGgtacatgggaaggggggacaacaaatctataaagtataaagatgccggtg #### Abcc2_ID8823_7 --> 1 - 0 Original Alignment cACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctctacctgggtttcatttaaattttatatgattttgaaatacagcACTCTTCTGAAAGGATACAGGCATCCACTAACGATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCTAAGTCACTCACTAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAACCCAGGCAGGCACTTCAGAGGCGGCTGAAGAGGTCCCAGCAGAGTCCTGGGGGCACATCACATGGGTCCACAAAAAAGCAAAGTCAGAGCCAAGATGTACTTGTACTGgtgaatgtaccccaggtatctgtgtgagtacactgtatgggtcggctgaa Alignment from CESAR cACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctctacctgggtttcatttaaattttatatgattttgaaatacagcACTCTTCTGAAAGGATACAGGCATCCACTAACGATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCTAAGTCACTCACTAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAACCCAGGCAGGCACTTCAGAGGCGGCTGAAGAGGTCCCAGCAGAGTCCTGGGGGCACATCACATGGGTCCACAAAAAAGCAAAGTCAGAGCCAAGATGTACTTGTACTGgtgaatgtaccccaggtatctgtgtgagtacactgtatgggtcggctgaa Alignment from Spaln_aa2Genome CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTGGAAGAC aggggctctacctgggtttcatttaaattttatatgattttgaaatacagCACTCTTCTGAAAGGATACAGGCATCCACTAACGATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCTAAGTCACTCACTAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAACCCAGGCAGGCACTTCAGAGGCGGCTGAAGAGGTCCCAGCAGAGTCCTGGGGGCACATCACATGGGTCCACAAAAAAGCAAAGTCAGAGCCAAGATGTACTTGTACTGGTGAATgtaccccaggtatctgtgtgagtacactgtatgggtcggctgaa Alignment from Spaln_nt2Genome CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctctacctgggtttcatttaaattttatatgattttgaaatacagCACTCTTCTGAAAGGATACAGGCATCCACTAACGATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCTAAGTCACTCACTAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAACCCAGGCAGGCACTTCAGAGGCGGCTGAAGAGGTCCCAGCAGAGTCCTGGGGGCACATCACATGGGTCCACAAAAAAGCAAAGTCAGAGCCAAGATGTACTTGTACTGgtgaatgtaccccaggtatctgtgtgagtacactgtatgggtcggctgaa Alignment from Pairagon CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctctacctgggtttcatttaaattttatatgattttgaaatacagCACTCTTCTGAAAGGATACAGGCATCCACTAACGATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCTAAGTCACTCACTAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAACCCAGGCAGGCACTTCAGAGGCGGCTGAAGAGGTCCCAGCAGAGTCCTGGGGGCACATCACATGGGTCCACAAAAAAGCAAAGTCAGAGCCAAGATGTACTTGTACTGgtgaatgtaccccaggtatctgtgtgagtacactgtatgggtcggctgaa Alignment from Exonerate_protein2genome CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTGGAAGAC aggggctctacctgggtttcatttaaattttatatgattttgaaatacagCACTCTTCTGAAAGGATACAGGCATCCACTAACGATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCTAAGTCACTCACTAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAACCCAGGCAGGCACTTCAGAGGCGGCTGAAGAGGTCCCAGCAGAGTCCTGGGGGCACATCACATGGGTCCACAAAAAAGCAAAGTCAGAGCCAAGATGTACTTGTACTGGTGAATgtaccccaggtatctgtgtgagtacactgtatgggtcggctgaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACTGTTCTGAAAGGTTACAAGCATCCATTGACAATAGAAGATGTGTGGGATATTGAAGAAAATCTTAAAGCCAAGTCACTCACCAGCAAGTTTAAGACGATCATGACAAAGGACCTGCAGAAAGCCAGGCAGGCTCTTCAGAGGCGGCTGAAGAAGTCCCAGCAGAGCCCTGAGGGCACGTCACACGGATTGACCAAGAAGCAGAGTCAGAGCCAAGATGTCCTTGTCCTG aggggctctacctgggtttcatttaaattttatatgattttgaaatacagCACTCTTCTGAAAGGATACAGGCATCCACTAACGATAGAGGATGTGTGGGACATTGAAGAAAATCTTAAAGCTAAGTCACTCACTAGCAAATTTAAGACAATTATGACAAAGGACCTCCAAAAACCCAGGCAGGCACTTCAGAGGCGGCTGAAGAGGTCCCAGCAGAGTCCTGGGGGCACATCACATGGGTCCACAAAAAAGCAAAGTCAGAGCCAAGATGTACTTGTACTGgtgaatgtaccccaggtatctgtgtgagtacactgtatgggtcggctgaa #### Abcc2_ID8824_8 --> 0 - 2 Original Alignment GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa acaatcctgtaaattcacagcctaggggctctctgtgtcctgttccacagAAGGACTCAAAAAAG---------AGGTCTGAGGCCACTAAAGACTTTCTCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTGCATGATATCCTCTTGTTCCTGAATCCTCAGCTCCTGgagtaagtgcacaaaacttgcaaacttactagtcttaaagttgcacaagctg Alignment from CESAR GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGaa acaatcctgtaaattcacagcctaggggctctctgtgtcctgttccacagAAGGACTCA---------AAAAAGAGGTCTGAGGCCACTAAAGACTTTCTCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTGCATGATATCCTCTTGTTCCTGAATCCTCAGCTCCTGgagtaagtgcacaaaacttgcaaacttactagtcttaaagttgcacaagctg Alignment from Spaln_aa2Genome AAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA acaatcctgtaaattcacagcctaggggctctctgtgtcctgttccacagAAGGACTCAAAAAAGAGGTCTGAGGCCACTAAAGACTTTCTCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTGCATGATATCCTCTTGTTCCTGAATCCTCAGCTCCTGGAgtaagtgcacaaaacttgcaaacttactagtcttaaagttgcacaagctg Alignment from Spaln_nt2Genome AAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA acaatcctgtaaattcacagcctaggggctctctgtgtcctgttccacagAAGGACTCAAAAAAGAGGTCTGAGGCCACTAAAGACTTTCTCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTGCATGATATCCTCTTGTTCCTGAATCCTCAGCTCCTGGAgtaagtgcacaaaacttgcaaacttactagtcttaaagttgcacaagctg Alignment from Pairagon GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA acaatcctgtaaattcacagcctaggggctctctgtgtcctgttccacagAAGGACTC---------AAAAAAGAGGTCTGAGGCCACTAAAGACTTTCTCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTGCATGATATCCTCTTGTTCCTGAATCCTCAGCTCCTGGAgtaagtgcacaaaacttgcaaacttactagtcttaaagttgcacaagctg Alignment from Exonerate_protein2genome GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA acaatcctgtaaattcacagcctaggggctctctgtgtcctGTTCCACAGAAGGACTCAAAAAAGAGGTCTGAGGCCACTAAAGACTTTCTCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTGCATGATATCCTCTTGTTCCTGAATCCTCAGCTCCTGGAgtaagtgcacaaaacttgcaaacttactagtcttaaagttgcacaagctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGACTCGAAAAAGAAGAAAAAGAAGTCTGAGGCCACCAAAGACTTTCCCAAATCCTGGTTGGTGAAGGCTCTCTTCAAAACGTTCTACGTGGTGATCCTGAAGTCATTTATTCTGAAATTAGCACATGATATTCTTTTGTTTCTGAATCCTCAGCTGCTGAA acaatcctgtaaattcacagcctaggggctctctgtgtcctgttccacagAAGGACTCAAAAAAGAGG---------TCTGAGGCCACTAAAGACTTTCTCAAAACCTGGTTGGTGAAGGCTCTCTTCAAAACATTCTATGTGGTAGTCCTTAAATCATTTATTCTGAAATTAGTGCATGATATCCTCTTGTTCCTGAATCCTCAGCTCCTGGAgtaagtgcacaaaacttgcaaacttactagtcttaaagttgcacaagctg #### Abcc2_ID8828_12 --> 0 - 0 Original Alignment ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG gagttagtttctttttaaggcacagttcataactctgaaatttattgtagATCCTAAAGCACTTTGCCTGGGAGCCCTCCTTTAAAGAGCAGGTTAATAGCATTCGGAAAAAAGAGCTACGGAAC---TTATACCTCAGCCAACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgttcaaggatatgaagagtatggaccaatgtcgaaactggtaagggca Alignment from CESAR ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG gagttagtttctttttaaggcacagttcataactctgaaatttattgtagATCCTAAAGCACTTTGCCTGGGAGCCCTCCTTTAAAGAGCAGGTTAATAGCATTCGGAAAAAAGAGCTACGGAACTTA---TACCTCAGCCAACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgttcaaggatatgaagagtatggaccaatgtcgaaactggtaagggca Alignment from Spaln_aa2Genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG gagttagtttctttttaaggcacagttcataactctgaaatttattgtagATCCTAAAGCACTTTGCCTGGGAGCCCTCCTTTAAAGAGCAGGTTAATAGCATTCGGAAAAAAGAGCTACGGAACTTATAC---CTCAGCCAACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgttcaaggatatgaagagtatggaccaatgtcgaaactggtaagggca Alignment from Spaln_nt2Genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG gagttagtttctttttaaggcacagttcataactctgaaatttattgtagATCCTAAAGCACTTTGCCTGGGAGCCCTCCTTTAAAGAGCAGGTTAATAGCATTCGGAAAAAAGAGCTACGGAACT---TATACCTCAGCCAACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgttcaaggatatgaagagtatggaccaatgtcgaaactggtaagggca Alignment from Pairagon ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG gagttagtttctttttaaggcacagttcataactctgaaatttattgtagATCCTAAAGCACTTTGCCTGGGAGCCCTCCTTTAAAGAGCAGGTTAATAGCATTCGGAAAAAAGAGCTACGGAACT---TATACCTCAGCCAACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgttcaaggatatgaagagtatggaccaatgtcgaaactggtaagggca Alignment from Exonerate_protein2genome ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG gagttagtttctttttaaggcacagttcataactctgaaatttattgtagATCCTAAAGCACTTTGCCTGGGAGCCCTCCTTTAAAGAGCAGGTTAATAGCATTCGGAAAAAAGAGCTACGGAACTTATAC---CTCAGCCAACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgttcaaggatatgaagagtatggaccaatgtcgaaactggtaagggca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCCTGAAATACTTTGCCTGGGAACCTTCCTTTAAAGAGCAAGTGAACAGCATTCGGAAGAAAGAACTCAGGAACTTGCTGCGCTTCAGCCAGCTGCAGACGATTTTGATTTTCATCTTACACCTAACTCCAACCCTG gagttagtttctttttaaggcacagttcataactctgaaatttattgtagATCCTAAAGCACTTTGCCTGGGAGCCCTCCTTTAAAGAGCAGGTTAATAGCATTCGGAAAAAAGAGCTACGGAACTTATAC---CTCAGCCAACTGCAGTCAATCTTAATTTTCATTTTGCACCTAACACCTACTTTGgtgttcaaggatatgaagagtatggaccaatgtcgaaactggtaagggca #### Abcc2_ID8829_13 --> 0 - 0 Original Alignment GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG ttgctgccagctctgaaagatggttgatctggtctctgtcctgtctccagGTGTCTGTGAATACATTTTCTGTCTACCTCCTGGTGGATAGCCAAAATGTCTCAAATGCAGAGCAGGCCTTCACCTCTATCACCCTATTCAACATTTTGCACTTCTCTCTAGCCATGCTTCCCATTGTGATCGCATCAGTCATCCAGgtatggaagagtactcttataccctcaatgtgctcacagcagagttcaaa Alignment from CESAR GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG ttgctgccagctctgaaagatggttgatctggtctctgtcctgtctccagGTGTCTGTGAATACATTTTCTGTCTACCTCCTGGTGGATAGCCAAAATGTCTCAAATGCAGAGCAGGCCTTCACCTCTATCACCCTATTCAACATTTTGCACTTCTCTCTAGCCATGCTTCCCATTGTGATCGCATCAGTCATCCAGgtatggaagagtactcttataccctcaatgtgctcacagcagagttcaaa Alignment from Spaln_aa2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG ttgctgccagctctgaaagatggttgatctggtctctgtcctgtctccagGTGTCTGTGAATACATTTTCTGTCTACCTCCTGGTGGATAGCCAAAATGTCTCAAATGCAGAGCAGGCCTTCACCTCTATCACCCTATTCAACATTTTGCACTTCTCTCTAGCCATGCTTCCCATTGTGATCGCATCAGTCATCCAGgtatggaagagtactcttataccctcaatgtgctcacagcagagttcaaa Alignment from Spaln_nt2Genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG ttgctgccagctctgaaagatggttgatctggtctctgtcctgtctccagGTGTCTGTGAATACATTTTCTGTCTACCTCCTGGTGGATAGCCAAAATGTCTCAAATGCAGAGCAGGCCTTCACCTCTATCACCCTATTCAACATTTTGCACTTCTCTCTAGCCATGCTTCCCATTGTGATCGCATCAGTCATCCAGgtatggaagagtactcttataccctcaatgtgctcacagcagagttcaaa Alignment from Pairagon GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG ttgctgccagctctgaaagatggttgatctggtctctgtcctgtctccagGTGTCTGTGAATACATTTTCTGTCTACCTCCTGGTGGATAGCCAAAATGTCTCAAATGCAGAGCAGGCCTTCACCTCTATCACCCTATTCAACATTTTGCACTTCTCTCTAGCCATGCTTCCCATTGTGATCGCATCAGTCATCCAGgtatggaagagtactcttataccctcaatgtgctcacagcagagttcaaa Alignment from Exonerate_protein2genome GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG ttgctgccagctctgaaagatggttgatctggtctctgtcctgtctccagGTGTCTGTGAATACATTTTCTGTCTACCTCCTGGTGGATAGCCAAAATGTCTCAAATGCAGAGCAGGCCTTCACCTCTATCACCCTATTCAACATTTTGCACTTCTCTCTAGCCATGCTTCCCATTGTGATCGCATCAGTCATCCAGgtatggaagagtactcttataccctcaatgtgctcacagcagagttcaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCCGTGATCACATTTTCTGTTTACGTCCTGGTGGATAGTCAAAATGTTTTGAACGCGGAGAAGGCTTTCACCTCCATCACCCTCTTCAATATCCTGCGCTTTCCTCTGGCCATGCTTCCCATGGTGATCTCTTCAGTCATCCAG ttgctgccagctctgaaagatggttgatctggtctctgtcctgtctccagGTGTCTGTGAATACATTTTCTGTCTACCTCCTGGTGGATAGCCAAAATGTCTCAAATGCAGAGCAGGCCTTCACCTCTATCACCCTATTCAACATTTTGCACTTCTCTCTAGCCATGCTTCCCATTGTGATCGCATCAGTCATCCAGgtatggaagagtactcttataccctcaatgtgctcacagcagagttcaaa #### Abcc2_ID8832_16 --> 1 - 0 Original Alignment tGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccactagcatccttctttctctccttgttctttctagtGTGAACTTAGATATAAAACCAGGTGAGCTTGTGGCTGTGGTGGGGACTATTGGGTCTGGAAAGTCCTCCTTGATTTCAACCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaatgggtagaaaatgaagacttctaatcaccctgaatgaagctttaga Alignment from CESAR tGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccactagcatccttctttctctccttgttctttctagtGTGAACTTAGATATAAAACCAGGTGAGCTTGTGGCTGTGGTGGGGACTATTGGGTCTGGAAAGTCCTCCTTGATTTCAACCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaatgggtagaaaatgaagacttctaatcaccctgaatgaagctttaga Alignment from Spaln_aa2Genome TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccactagcatccttctttctctccttgttctttctagTGTGAACTTAGATATAAAACCAGGTGAGCTTGTGGCTGTGGTGGGGACTATTGGGTCTGGAAAGTCCTCCTTGATTTCAACCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaatgggtagaaaatgaagacttctaatcaccctgaatgaagctttaga Alignment from Spaln_nt2Genome TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccactagcatccttctttctctccttgttctttctagTGTGAACTTAGATATAAAACCAGGTGAGCTTGTGGCTGTGGTGGGGACTATTGGGTCTGGAAAGTCCTCCTTGATTTCAACCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaatgggtagaaaatgaagacttctaatcaccctgaatgaagctttaga Alignment from Pairagon TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccactagcatccttctttctctccttgttctttctagTGTGAACTTAGATATAAAACCAGGTGAGCTTGTGGCTGTGGTGGGGACTATTGGGTCTGGAAAGTCCTCCTTGATTTCAACCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaatgggtagaaaatgaagacttctaatcaccctgaatgaagctttaga Alignment from Exonerate_protein2genome TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccactagcatccttctttctctccttgttctttctagTGTGAACTTAGATATAAAACCAGGTGAGCTTGTGGCTGTGGTGGGGACTATTGGGTCTGGAAAGTCCTCCTTGATTTCAACCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaatgggtagaaaatgaagacttctaatcaccctgaatgaagctttaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGTGAACCTGGACATAAAACCAGGCCAACTGGTGGCTGTGGTGGGCACTGTAGGCTCTGGGAAGTCCTCTTTGATATCAGCCATGCTGGGAGAAATGGAGAATGTCCATGGGCATATCACCATCAAG gataacctgccacccactagcatccttctttctctccttgttctttctagTGTGAACTTAGATATAAAACCAGGTGAGCTTGTGGCTGTGGTGGGGACTATTGGGTCTGGAAAGTCCTCCTTGATTTCAACCATGTTGGGGGAAATGGAGAATGTCCATGGGCAAAGTACCATCAAAgtaatgggtagaaaatgaagacttctaatcaccctgaatgaagctttaga #### Abcc2_ID8833_17 --> 0 - 0 Original Alignment GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtggctgttgaattgatttctctgtttaaactagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATACATGTGCT---CTCCTGGATCCGGAGATGTTACCCAGTAGAGACATGGCTGATATTGGGGAGAAGgtattgtgggcggtggaagattgaatgaaagcaatatgtgtgggaggctg Alignment from CESAR GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtggctgttgaattgatttctctgtttaaactagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATACATGTGCTCTCCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCTGATATTGGGGAGAAGgtattgtgggcggtggaagattgaatgaaagcaatatgtgtgggaggctg Alignment from Spaln_aa2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtggctgttgaattgatttctctgtttaaactagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATACATGTGCTCTCCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCTGATATTGGGGAGAAGgtattgtgggcggtggaagattgaatgaaagcaatatgtgtgggaggctg Alignment from Spaln_nt2Genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtggctgttgaattgatttctctgtttaaactagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATACATGTGCTCTCCT---GGATCCGGAGATGTTACCCAGTAGAGACATGGCTGATATTGGGGAGAAGgtattgtgggcggtggaagattgaatgaaagcaatatgtgtgggaggctg Alignment from Pairagon GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtggctgttgaattgatttctctgtttaaactagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATACATGTGCTCTCCT---GGATCCGGAGATGTTACCCAGTAGAGACATGGCTGATATTGGGGAGAAGgtattgtgggcggtggaagattgaatgaaagcaatatgtgtgggaggctg Alignment from Exonerate_protein2genome GGCTCCATAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtggctgttgaattgatttctctgtttaaactagGGTTCTATAGCCTATGTCCCACGGCATGCTTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATACATGTGCTCTCCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCTGATATTGGGGAGAAGgtattgtgggcggtggaagattgaatgaaagcaatatgtgtgggaggctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TAGCCTACGTCCCTCAGCAGGCCTGGATTCAGAACGGGACCATCAAAGATAACATCCTGTTTGGGTCAGAATACGATGAAAAGAAGTACCAGCGAGTTATCGAAGCGTGCGCTCTCCTCCCAGACTTGGAAATGTTGCCTGGAGGAGACATGGCTGAGATCGGAGAGAAG gcctccactttccaaagtggctgttgaattgatttctctgtttaaactagggttctatagCC---TATGTCCCACGGCATGCTTGGATTCAGAATGGGACCATCAAAGACAACATCCTGTTTGGATCAGAATATGAGGAAAAGGAGTATCAGCGGGTTATTGATACATGTGCTCTCCTG---GATCCGGAGATGTTACCCAGTAGAGACATGGCTGATATTGGGGAGAAGgtattgtgggcggtggaagattgaatgaaagcaatatgtgtgggaggctg #### Abcc2_ID8837_21 --> 1 - 0 Original Alignment cTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tacggttgtcacgccattaaatacaatgtctcctctgtgctgccctacagcTCTAGGTCAGGCAGCAGGTGTGGCAAGTCTCTAAAGAGCTCCTTGAAA------------AATGTCTTGAAT---AAGGCAGAAGTAGTGAAA---CAAAAACTAATAAAGAAGGAGTTTGTGGAGACTGGTAAGgtatgtacacacacccactactactgttgagatacgttgatccactctgc Alignment from CESAR cTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tacggttgtcacgccattaaatacaatgtctcctctgtgctgccctacagcTCTAGGTCAGGCAGCAGGTGTGGCAAGTCTCTAAAGAGCTCCTTGAAA------------AATGTCTTGAAT---AAGGCAGAAGTAGTGAAA---CAAAAACTAATAAAGAAGGAGTTTGTGGAGACTGGTAAGgtatgtacacacacccactactactgttgagatacgttgatccactctgc Alignment from Spaln_aa2Genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tacggttgtcacgccattaaatacaatgtctcctctgtgctgccctacagCTCTAGGTCAGGCAGCAGGTGTGGCAAGTCTCTAAAGAGCTCCTTGAAA------------AATGTCTTGAAT---AAGGCAGAAGTAGTGAAA---CAAAAACTAATAAAGAAGGAGTTTGTGGAGACTGGTAAGgtatgtacacacacccactactactgttgagatacgttgatccactctgc Alignment from Spaln_nt2Genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tacggttgtcacgccattaaatacaatgtctcctctgtgctgccctacagCTCTAGGTCAGGCAGCAGGTGTGGCAAGTCTCTAAAGAGCTCCTTGAAA------------AATGTCTTGAAT---AAGGCAGAAGTAGTGAA---ACAAAAACTAATAAAGAAGGAGTTTGTGGAGACTGGTAAGgtatgtacacacacccactactactgttgagatacgttgatccactctgc Alignment from Pairagon CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tacggttgtcacgccattaaatacaatgtctcctctgtgctgccctacagCTCTAGGTCAGGCAGCAGGTGTGGCAAGTCTCTAAAGAGCTCCTTGAAA------------AATGTCTTGAAT---AAGGCAGAAGTAGTGAA---ACAAAAACTAATAAAGAAGGAGTTTGTGGAGACTGGTAAGgtatgtacacacacccactactactgttgagatacgttgatccactctgc Alignment from Exonerate_protein2genome CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tacggttgtcacgccattaaatacaatgtctcctctgtgctgccctacagCTCTAGGTCAGGCAGCAGGTGTGGCAAGTCTCTAAAGAGCTCCTTGAAA------------AATGTCTTGAAT---AAGGCAGAAGTAGTGAAA---CAAAAACTAATAAAGAAGGAGTTTGTGGAGACTGGTAAGgtatgtacacacacccactactactgttgagatacgttgatccactctgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCTAGGTCCGGCAGCAGGCGTGGGAAGTCCCTCAAAAGCTCCTTGAAAATTAAAAGTGTGAATGCCTTGAATAAGAAGGAGGAAGTAGTGAAAGGACAAAAACTAATTAAGAAGGAATTTGTGGAAACTGGGAAG tacggttgtcacgccattaaatacaatgtctcctctgtgctgccctacagCTCTAGGTCAGGCAGCAGGTGTGGCAAGTCTCTAAAGAGCTCCTTGAAA------------AATGTCTTGAAT---AAGGCAGAAGTAGTGAAA---CAAAAACTAATAAAGAAGGAGTTTGTGGAGACTGGTAAGgtatgtacacacacccactactactgttgagatacgttgatccactctgc #### Abcc2_ID8838_22 --> 0 - 1 Original Alignment GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAggtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from CESAR GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAg tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAggtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Spaln_aa2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Spaln_nt2Genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Pairagon GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Exonerate_protein2genome GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAAAGTTCTCCATCTACCTGAAATATCTGCAGGCGGTAGGATGGTGGTCCCTGCTCTTCATCGTCATCTTCTACGTATTGAACTATGTGGCTTTTATTGGCACTAACCTCTGGCTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATGGGACCGACAATTCACCTTCTCAGAGGGACATGAGAATCGGGGTCTTTGGAGCTCTGGGAATAGCACAAG tcattgtggacctatagtgcttgattatattttcctcttatgtttcttagGTCAAGTTGTCTATTTACTTGAAGTATCTGCAGGCAGTGGGATGGTGGGCCCTGCTCTTCATTATCATCTTCTATGTACTGAACTATGTGGCCTTCATTGGCACTAATCTATGGTTGAGTGCTTGGACCAGTGACTCTGAAAAACAGAATAGCACTGACAATTCACCATCCCAGAGGGATATGAGAATCAGAGTATTTGGGGCTCTGGGTATAGCACAAGgtaggaatgtcaagaccacaactcttaaagctcagatacatcttgtcata #### Abcc2_ID8841_25 --> 0 - 2 Original Alignment GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACcg tctctaagtcaaggaattatgacatatactgagtacccctctgccctcagGTCTTTTATGTGGCAACATCCCAT---TTGAGACGACTGGATTCTGTCACCAAATCTCCAATATATCCTCACTTGAGC------ATTTCTGGTTTGCCTGTTATCCATGCATTTGAACACCAA---AGGTTTCTAGCTAACAGTGAGAAACAGGTAGACACCAACCAGAAGTGCATCTTTTCCTGGATTACTTCCAATcggtaagtcttctttaggcattcacatggatggatatttcgcaactctacat Alignment from CESAR GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACcg tctctaagtcaaggaattatgacatatactgagtacccctctgccctcagGTCTTTTATGTGGCAACATCC---CATTTGAGACGACTGGATTCTGTCACCAAATCTCCAATATATCCTCACTTGAGC------ATTTCTGGTTTGCCTGTTATCCATGCATTTGAACAC---CAAAGGTTTCTAGCTAACAGTGAGAAACAGGTAGACACCAACCAGAAGTGCATCTTTTCCTGGATTACTTCCAATcggtaagtcttctttaggcattcacatggatggatatttcgcaactctacat Alignment from Spaln_aa2Genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG tctctaagtcaaggaattatgacatatactgagtacccctctgccctcagGTCTTTTATGTGGCAACATCC---CATTTGAGACGACTGGATTCTGTCACCAAATCTCCAATATATCCTCACTTGAGC------ATTTCTGGTTTGCCTGTTATCCATGCATTTGAACAC---CAAAGGTTTCTAGCTAACAGTGAGAAACAGGTAGACACCAACCAGAAGTGCATCTTTTCCTGGATTACTTCCAATCGgtaagtcttctttaggcattcacatggatggatatttcgcaactctacat Alignment from Spaln_nt2Genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG tctctaagtcaaggaattatgacatatactgagtacccctctgccctcagGTCTTTTATGTGGCAACATC---CCATTTGAGACGACTGGATTCTGTCACCAAATCTCCAATATATCCTCACTT------GAGCATTTCTGGTTTGCCTGTTATCCATGCATTTGAACAC---CAAAGGTTTCTAGCTAACAGTGAGAAACAGGTAGACACCAACCAGAAGTGCATCTTTTCCTGGATTACTTCCAATCGgtaagtcttctttaggcattcacatggatggatatttcgcaactctacat Alignment from Pairagon GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG tctctaagtcaaggaattatgacatatactgagtacccctctgccctcagGTCTTTTATGTGGCAACATC---CCATTTGAGACGACTGGATTCTGTCACCAAATCTCCAATATATCCTCACTT------GAGCATTTCTGGTTTGCCTGTTATCCATGCATTTGAACAC---CAAAGGTTTCTAGCTAACAGTGAGAAACAGGTAGACACCAACCAGAAGTGCATCTTTTCCTGGATTACTTCCAATCGgtaagtcttctttaggcattcacatggatggatatttcgcaactctacat Alignment from Exonerate_protein2genome GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG tctctaagtcaaggaattatgacatatactgagtacccctctgccctcagGTCTTTTATGTGGCAACATCC---CATTTGAGACGACTGGATTCTGTCACCAAATCTCCAATATATCCTCACTTGAGC------ATTTCTGGTTTGCCTGTTATCCATGCATTTGAACAC---CAAAGGTTTCTAGCTAACAGTGAGAAACAGGTAGACACCAACCAGAAGTGCATCTTTTCCTGGATTACTTCCAATCGgtaagtcttctttaggcattcacatggatggatatttcgcaactctacat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTTTTATGTGGCTACATCCCGCCAGCTGAGACGGCTGGATTCTGTCACCAAATCTCCGATCTATTCTCACTTTAGTGAGACTGTCTCTGGTTTGCCTGTTATTCGGGCCTTTGAGCACCAGCAGAGATTTCTAGCAAACAGTGAGAAGCAGATTGACACCAACCAGAAATGCGTCTTTTCCTGGATTACCTCCAACCG tctctaagtcaaggaattatgacatatactgagtacccctctgccctcagGTCTTTTATGTGGCAACATCCCAT---TTGAGACGACTGGATTCTGTCACCAAATCTCCAATATATCCTCACTTGAGC------ATTTCTGGTTTGCCTGTTATCCATGCATTTGAACAC---CAAAGGTTTCTAGCTAACAGTGAGAAACAGGTAGACACCAACCAGAAGTGCATCTTTTCCTGGATTACTTCCAATCGgtaagtcttctttaggcattcacatggatggatatttcgcaactctacat #### Acsl5_ID11600_5 --> 0 - 1 Original Alignment TGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATGACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGg cactccataggtgttcaatccttctcttcagtcaccaactgtgttcacagTGGGTCATCTCAGAGTTAGCCTGTTACACATATTCCATGTTAGCTGTCCCCCTATATGACACATTGGGG------GCCACCATCTTTGTTATCAACAGGggtgagacattactctgcattgtgcacactcattctgggtaagcttagtaa Alignment from CESAR TGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATGACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGg cactccataggtgttcaatccttctcttcagtcaccaactgtgttcacagTGGGTCATCTCAGAGTTAGCCTGTTACACATATTCCATGTTAGCTGTCCCCCTATATGACACATTGGGG------GCCACCATCTTTGTTATCAACAGGggtgagacattactctgcattgtgcacactcattctgggtaagcttagtaa Alignment from Spaln_aa2Genome TGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATGACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGG cactccataggtgttcaatccttctcttcagtcaccaactgtgttcacagTGGGTCATCTCAGAGTTAGCCTGTTACACATATTCCATGTTAGCTGTCCCCCTATATGACACATTGGGG------GCCACCATCTTTGTTATCAACAGGGgtgagacattactctgcattgtgcacactcattctgggtaagcttagtaa Alignment from Spaln_nt2Genome TGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATGACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGG cactccataggtgttcaatccttctcttcagtcaccaactgtgttcacagTGGGTCATCTCAGAGTTAGCCTGTTACACATATTCCATGTTAGCTGTCCCCCTATATGACACATTGGG------GGCCACCATCTTTGTTATCAACAGGGgtgagacattactctgcattgtgcacactcattctgggtaagcttagtaa Alignment from Pairagon TGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATGACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGG cactccataggtgttcaatccttctcttcagtcaccaactgtgttcacagTGGGTCATCTCAGAGTTAGCCTGTTACACATATTCCATGTTAGCTGTCCCCCTATATGACACATTGGG------GGCCACCATCTTTGTTATCAACAGGGgtgagacattactctgcattgtgcacactcattctgggtaagcttagtaa Alignment from Exonerate_protein2genome TGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATGACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGG cactccataggtgttcaatccttctcttcagtcaccaactgtgttcacagTGGGTCATCTCAGAGTTAGCCTGTTACACATATTCCATGTTAGCTGTCCCCCTATATGACACATTGGGG------GCCACCATCTTTGTTATCAACAGGGgtgagacattactctgcattgtgcacactcattctgggtaagcttagtaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGGGTCATCTCTGAGTTAGCCTGTTACACATATTCCATGGTAGCTGTCCCCCTGTATGACACGCTGGGTACAGAAGCCATCATCTTTGTCATCAACAGGG cactccataggtgttcaatccttctcttcagtcaccaactgtgttcacagTGGGTCATCTCAGAGTTAGCCTGTTACACATATTCCATGTTAGCTGTCCCCCTATATGACACATTGGGG------GCCACCATCTTTGTTATCAACAGGGgtgagacattactctgcattgtgcacactcattctgggtaagcttagtaa #### Acsl5_ID11612_17 --> 0 - 0 Original Alignment AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacggtggacctgcaaccagagtgtaggcttaccttttaatggttagAATGGAACGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAGTTGGCACAGGGAGAGTACATTGCCCCGGAGAAAATTGAAAATGTTTATTCTAGGAGCAGACCAGTACTGCAAGTTTTCGTTCATGGGGAGAGCTTACGGgtgagtcaacagcatgaccacttgcaattgctctttgctaagcatttgca Alignment from CESAR AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacggtggacctgcaaccagagtgtaggcttaccttttaatggttagAATGGAACGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAGTTGGCACAGGGAGAGTACATTGCCCCGGAGAAAATTGAAAATGTTTATTCTAGGAGCAGACCAGTACTGCAAGTTTTCGTTCATGGGGAGAGCTTACGGgtgagtcaacagcatgaccacttgcaattgctctttgctaagcatttgca Alignment from Spaln_aa2Genome AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacggtggacctgcaaccagagtgtaggcttaccttttaatggttagAATGGAACGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAGTTGGCACAGGGAGAGTACATTGCCCCGGAGAAAATTGAAAATGTTTATTCTAGGAGCAGACCAGTACTGCAAGTTTTCGTTCATGGGGAGAGCTTACGGgtgagtcaacagcatgaccacttgcaattgctctttgctaagcatttgca Alignment from Spaln_nt2Genome AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacggtggacctgcaaccagagtgtaggcttaccttttaatggttagAATGGAACGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAGTTGGCACAGGGAGAGTACATTGCCCCGGAGAAAATTGAAAATGTTTATTCTAGGAGCAGACCAGTACTGCAAGTTTTCGTTCATGGGGAGAGCTTACGGgtgagtcaacagcatgaccacttgcaattgctctttgctaagcatttgca Alignment from Pairagon AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacggtggacctgcaaccagagtgtaggcttaccttttaatggttagAATGGAACGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAGTTGGCACAGGGAGAGTACATTGCCCCGGAGAAAATTGAAAATGTTTATTCTAGGAGCAGACCAGTACTGCAAGTTTTCGTTCATGGGGAGAGCTTACGGgtgagtcaacagcatgaccacttgcaattgctctttgctaagcatttgca Alignment from Exonerate_protein2genome AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacggtggacctgcaaccagagtgtaggcttaccttttaatggttagAATGGAACGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAGTTGGCACAGGGAGAGTACATTGCCCCGGAGAAAATTGAAAATGTTTATTCTAGGAGCAGACCAGTACTGCAAGTTTTCGTTCATGGGGAGAGCTTACGGgtgagtcaacagcatgaccacttgcaattgctctttgctaagcatttgca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AATGGAACTCTGAAAATTGTTGACCGGAAGAAGAATATTTTCAAGTTGGCACAAGGAGAATACATTGCCCCAGAGAAGATTGAAAATGTTTATTCCAGGAGCAGACCAGTATTGCAAGTTTTTGTCCATGGGGAGAGCTTACGG gtcaacggtggacctgcaaccagagtgtaggcttaccttttaatggttagAATGGAACGCTGAAAATTGTGGGCCAAAAGAAGAACATTTTTAAGTTGGCACAGGGAGAGTACATTGCCCCGGAGAAAATTGAAAATGTTTATTCTAGGAGCAGACCAGTACTGCAAGTTTTCGTTCATGGGGAGAGCTTACGGgtgagtcaacagcatgaccacttgcaattgctctttgctaagcatttgca #### Acsl5_ID11613_18 --> 0 - 0 Original Alignment TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtcagccctctccaactttgcctttcctgcccatagTCATATATTATTGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAACCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtaagaacagctcagaatgctttaacacctgtactagctggggcagtcct Alignment from CESAR TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtcagccctctccaactttgcctttcctgcccatagTCATATATTATTGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAACCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtaagaacagctcagaatgctttaacacctgtactagctggggcagtcct Alignment from Spaln_aa2Genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtcagccctctccaactttgcctttcctgcccatagTCATATATTATTGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAACCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtaagaacagctcagaatgctttaacacctgtactagctggggcagtcct Alignment from Spaln_nt2Genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtcagccctctccaactttgcctttcctgcccatagTCATATATTATTGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAACCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtaagaacagctcagaatgctttaacacctgtactagctggggcagtcct Alignment from Pairagon TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtcagccctctccaactttgcctttcctgcccatagTCATATATTATTGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAACCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtaagaacagctcagaatgctttaacacctgtactagctggggcagtcct Alignment from Exonerate_protein2genome TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtcagccctctccaactttgcctttcctgcccatagTCATATATTATTGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAACCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtaagaacagctcagaatgctttaacacctgtactagctggggcagtcct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCATTCCTGATCGGAGTGGTGGTTCCCGACCCAGATTCACTTCCCTCATTTGCAGCCAAGATCGGGGTAAAGGGATCATTTGAAGAACTGTGCAAAAACCAA gaaaatacatatcagtcagccctctccaactttgcctttcctgcccatagTCATATATTATTGGTGTGGTGGTCCCAGATCCAGGTTCCCTTCCTTCATTTGCAACCAAGATTGGAGTAAAAGGAACATTTGAAGAACTGTGCACAAACCAAgtaagaacagctcagaatgctttaacacctgtactagctggggcagtcct #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG aagttacaagccttgggtattgtctgttctgccctcctttctctgtccagTGCGTAAAAGAGGCCATTTTAGAGGACTTGCAGAAAATTGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtagagatgtggtatgctttttgcagttgacgcagtaagtctagctagga #### Actn3_ID701_9 --> 0 - 0 Original Alignment GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from CESAR GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Spaln_aa2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Spaln_nt2Genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Pairagon GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Exonerate_protein2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from Exonerate_coding2genome GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt Alignment from GeneWise ---GAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG tggcatagtattgtaagggctatatttactttctggctttgcctcttcagGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTGCCAGTGAACCAGGAAAATGAGGAGCTGATGGAGAAGTATGCAAAACTGGCCAGTGAGgtgagcctagactacagtccgaggactccttcccagtgtttccttagtgt #### Actn3_ID702_8 --> 2 - 0 Original Alignment atATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagatATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa Alignment from CESAR atATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagatATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa Alignment from Spaln_aa2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagATATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa Alignment from Spaln_nt2Genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagATATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa Alignment from Pairagon ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagATATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa Alignment from Exonerate_protein2genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagATATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa Alignment from Exonerate_coding2genome ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagATATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa Alignment from GeneWise ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG atcccctattcagatgaagcctgtgtgccattcacccactcctccaacagATATTGTCAACACACCCAGACCAGATGAGAAAGCCATCATAACTTATCTTTCCTGCTTTTACCATGCATTTGCTGGGGCTGAGCAGgtaagtctcactgtcttagattacaaacattcatagtcacttgcccgcaa #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgcaaaatgcatagttgggccagatcataaggaatgtttct Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAg aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagaaATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAggtaagctgatgcaaaatgcatagttgggccagatcattcacctcccactt Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcataaggaatgtttct Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcataaggaatgtttct Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcataaggaatgtttct Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcataaggaatgtttct Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcataaggaatgtttct Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAG aaaggctaaatactggagtgaggtctgagactatctctgttccctcacagAAATAGTTGACGGGAACCTGAAGATGACCCTTGGCATGATTTGGACAATCATCCTCCGTTTTGCCATTCAGGACATCTCTGTAGAAGgtaagctgatgcaaaatgcatagttgggccagatcataaggaatgtttct #### Actr1a_ID9875_5 --> 0 - 2 Original Alignment CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCct tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCctgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga Alignment from CESAR CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCct tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCctgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga Alignment from Spaln_aa2Genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga Alignment from Spaln_nt2Genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga Alignment from Pairagon CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga Alignment from Exonerate_protein2genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga Alignment from Exonerate_coding2genome CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga Alignment from GeneWise CATCCTGTGCTCCTAACGGAGGCACCTTTAAACCCTCGGAAAAACCGGGAGCGAGCTGCAGAAGTCTTCTTCGAGACCTTCAATGTGCCGGCCCTCTTCATCTCCATGCAAGCCGTGCTGAGCCT tgtaaccctattgccttagcactgctttgattgctttctggctcctgcagCATCCTGTGCTCCTAACAGAGGCACCTTTAAACCACCAGAAAAACCGGGAGCGAGCTGCAGAAGTCATCTTTGAGACCTTCAATGTGCCTGCCCTCTTCATCTCCATGCAAGCTGTGCTGAGCCTgtaaagtgcagctatgcacagttggccttaaattgggctacgccttgaga #### Actr1a_ID9877_3 --> 1 - 0 Original Alignment tGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagtGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca Alignment from CESAR tGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagtGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca Alignment from Spaln_aa2Genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagTGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca Alignment from Spaln_nt2Genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagTGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca Alignment from Pairagon TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagTGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca Alignment from Exonerate_protein2genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagTGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca Alignment from Exonerate_coding2genome TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagTGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca Alignment from GeneWise TGTGGGCAGACCCAAACATGTTCGTGTCATGGCAGGAGCCCTGGAAGGTGACATCTTCATTGGCCCCAAAGCGGAG ttatgatctatcacaaaatatgaagattaacacagttggtctcctcacagTGTAGGCAGGCCCAAACATGTTCATGCGATGGCAGGGGCCCTCGAAGGTGACCTCTTCATTGGCTCCAAAGCAGAGgtacaacatgtccaacaggaaaaggtcctagtgtggatggagtgcacaca #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttaggcATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from CESAR gcATGGAC------TTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttaggcATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Spaln_aa2Genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Spaln_nt2Genome GCATGGACTTACCC------GCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Pairagon GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Exonerate_protein2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from Exonerate_coding2genome GCATG------GACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttagGCATGGACTCAGACTCAGCAGCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata Alignment from GeneWise CCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agagttatctggaaacaacagagatgagctttatggctttttccttttaggcatggactcagactcagcagCATTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCTAGCCGGCATGGTGCACCCACAAATACAAgtgagtgtactggtaatcaggcgtcccgagcagcgatatcagaacttata #### Add3_ID11211_3 --> 2 - 0 Original Alignment gtCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccaggtCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa Alignment from CESAR gtCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccaggtCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa Alignment from Spaln_aa2Genome GTCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccagGTCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa Alignment from Spaln_nt2Genome GTCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccagGTCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa Alignment from Pairagon GTCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccagGTCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa Alignment from Exonerate_protein2genome GTCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccagGTCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa Alignment from Exonerate_coding2genome AGTCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccaGGTCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa Alignment from GeneWise GTCTTGGCATGGTCACACCTATTAATGACCTTCCTGGTGCAGATACATCCTCGTATGTGAAGGGAGAAAAGCTTACTCGCTGCAAACTTGCCAGCCTCTACAGGCTTGCAGACTTGTTTGGGTGGGCGCACCTGGCAAATACGTACATCTCG aggacaagcttacatttgtcatgccccttacagtcacattgaccttccagGTCTTGGCATGGTCACACCTATAAATGACCTTCCTGGTACAGACACATCCTCATATGTGAAGGGAGAAAAGCTTACTCACTGCAAGCTTGCCAGCCTCTACAGGCTTGCAGACCTGTTTGGGTGGGTGCACTTGGCAAATACATACATCTCAgtgagtctagaagggtcttccctccatagctttgtacataggaaggataa #### Add3_ID11212_4 --> 0 - 0 Original Alignment GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata Alignment from CESAR GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata Alignment from Spaln_aa2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata Alignment from Spaln_nt2Genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCC---TGGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata Alignment from Pairagon GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata Alignment from Exonerate_protein2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata Alignment from Exonerate_coding2genome GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata Alignment from GeneWise GTACGAATAAGTAAGGAGCAAGACCACATTATAATAATTCCCAGAGGCCTCTCTTTTTCTGAAGCGACAGCCTCCACTTTG tgataatgaggcacaagtgagtgcttggtctgtatgctctttctgtacagGTCCGAATCAGTAAGGAACAAGATCACATTATAATAATTCCT---GGTCTGTCTTTTTCTGAGACAACAGCCTCCTCTTCAgtgagtttattatttccatgtcactaaccattaatactcttatcacaata #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtgagttagtttagagaatggtatcttcttcacattttacaggtGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtcagttagtttagagaatggtatcttcttcacattttacaggtGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtgagttagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtcagttagtttagagaatgtcttttctcttgtacttgacaggtGGGGAA Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtcagttagtttagagaatggtatcttcttcacattttacaggtGGGGAA Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtcagttagtttagagaatgtcttttctcttgtacttgacagGTGGGGAA Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtcagttagtttagagaatgtcttttctcttgtacttgacagGTGGGGAA Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtcagttagtttagagaatgtcttttctcttgtacttgacagGTGGGGAA Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtcagttagtttagagaatgtcttttctcttgtacttgacagGTGGGGAA Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtcagttagtttagagaatgtcttttctcttgtacttgacagGTGGGGAA Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC tcccacttagcttgccttccatgattcatttttttaatttgaaactgtagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtcagttagtttagagaatgtcttttctcttgtacttgacagGTGGGGAA #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from Exonerate_coding2genome tattccattttgtttgtttatgttcataccatgtcccttccatttcttagcccttctcccaaaatgctgcagagcatgtgcaggcccaccttgtgaaaaagcaggtccctccagatctgtttcaggtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG tattccattttgtttgtttatgttcataccatgtcccttccatttcttagCCCTTCTCCCAAAATGCTGCAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAGgtaagattggggtgctcatcatggtatcagacatctgtaacacgtcactc #### Adrbk1_ID493_2 --> 2 - 0 Original Alignment ggTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctaggaTACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa Alignment from CESAR ggTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctaggaTACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa Alignment from Spaln_aa2Genome GGTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctagGATACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa Alignment from Spaln_nt2Genome GGTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctagGATACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa Alignment from Pairagon GGTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctagGATACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa Alignment from Exonerate_protein2genome GGTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctagGATACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa Alignment from Exonerate_coding2genome GGTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctagGATACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa Alignment from GeneWise GGTACCTGCTTTTCCGGGACTTCTGCCTGAACCATCTGGAAGAGGCCAAGCCCTTGGTGGAGTTCTACGAAGAG ccacttaaatgaattaaagggaagcttagactgttctgtttgttccctagGATACCTGCTCTTCTGGGACTTTTGCCTGAATCATCTGGAAGAGGCCAGGCCTTTGGTAGAATTCTATGAAGAAgtgccctgggtgatgggtacgtctgctaggatgaacatggatgcccctaa #### Afap1l2_ID12250_13 --> 0 - 2 Original Alignment GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCtt tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGttgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata Alignment from CESAR GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTG---GATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCtt tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGttgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata Alignment from Spaln_aa2Genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGTTgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata Alignment from Spaln_nt2Genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTATGTGG---ATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGTTgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata Alignment from Pairagon GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTA---TGTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGTTgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata Alignment from Exonerate_protein2genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGTTgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata Alignment from Exonerate_coding2genome GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGTTgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata Alignment from GeneWise GCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAAGACTGACCCGGAAGAGCTCACCTACGACTAT---GTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCCAAAACCTCTCTCTT tagtgtgccttcttccctgtccagccccgctttcgctcgttgtgttttagGCAAAGTCTTCAGAAGAGATGGGCCACTGGCTGGGCCTCCTGCTCTCAGAGTCAGGCTCCAAAACTGATCCAGAAGAGCTCACTTATGACTATGTTGTTGATGCTAAAAGGGTCTCCTGCATAGTCAGTGCTGCCAAAACATTACTGTTgtaagtgcaataacgcctgcctttgtgtgctttccccattcttgcttata #### Afap1l2_ID12255_8 --> 0 - 0 Original Alignment TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa Alignment from CESAR TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa Alignment from Spaln_aa2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa Alignment from Spaln_nt2Genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa Alignment from Pairagon TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa Alignment from Exonerate_protein2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa Alignment from Exonerate_coding2genome TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa Alignment from GeneWise TGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCTCAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGGCTTCGG ccaagggtctcttccttggagtatagatttcatgcccctccttcccacagTGCTACAAATCGTCCAAAGACCACAGTCCTCAGCTGGATGTGAACTTGCGGGGCAGCAGCATTGTGCACAAAGAGAAGCAAGTGCGGAAAAAAGGACACAAGCTCAAAATCACACCAATGAATGCTGATGTCGTCGCACTTGGCCGACAGAGCAAAGACCAACCTGAGCAGTGGCTTCGGgtgagcagagtccctcacttctctagcactaattactagtgctgatgaaa #### Afap1l2_ID12260_4 --> 2 - 1 Original Alignment gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg aacttaccaggtacatgacacattaaatttttttgaattttgttttgtaggtTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAggtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg Alignment from CESAR gtTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAg aacttaccaggtacatgacacattaaatttttttgaattttgttttgtaggtTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAggtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg Alignment from Spaln_aa2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG aacttaccaggtacatgacacattaaatttttttgaattttgttttgtagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAGgtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg Alignment from Spaln_nt2Genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG aacttaccaggtacatgacacattaaatttttttgaattttgttttgtagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAGgtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg Alignment from Pairagon GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG aacttaccaggtacatgacacattaaatttttttgaattttgttttgtagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAGgtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg Alignment from Exonerate_protein2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG aacttaccaggtacatgacacattaaatttttttgaattttgttttgtagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAGgtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg Alignment from Exonerate_coding2genome GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG aacttaccaggtacatgacacattaaatttttttgaattttgttttgtagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAGgtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg Alignment from GeneWise GTTCTGATGAGGAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAG aacttaccaggtacatgacacattaaatttttttgaattttgttttgtagGTTCTGAAGAGGAATATATTTACATGAACAAAGTGTCAGTAAATGGGGAGGAAAACACATCATCTCCAGACAAAGgtaaggaccctccatgatgcaaggatgatgaaggtttggcaccatccatg #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTggtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG gctgacatggctgcagctgagacttaccctcactcttctctgcatcccagGAGCAGCCTGGCTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCTTGTCCATTCTCAACAAGTATGTTGgtgggtatcctgcccaattacaactcagacttcccataagctgcagaggc #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from CESAR GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Spaln_nt2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Pairagon GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from GeneWise GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga #### Aldh18a1_ID7971_12 --> 0 - 0 Original Alignment GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt Alignment from CESAR GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt Alignment from Spaln_aa2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt Alignment from Spaln_nt2Genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt Alignment from Pairagon GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt Alignment from Exonerate_protein2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt Alignment from Exonerate_coding2genome GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt Alignment from GeneWise GTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTG tgattgcactgacccaacagtgtattactttcccccacctttctcaacagGTGGCCGCCTTGGCCATTGCCAGTGGCAATGGCTTATTGCTCAAGGGTGGGAAGGAGGCTGCACATAGTAATCGCATTCTCCACCTCCTGATCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCAATTCAGCTGgtcagtggtctgccaattctacccagtgttgaaaattgtattgaatagtt #### Aldh18a1_ID7973_10 --> 0 - 1 Original Alignment AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGg ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagAGAGCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGggtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc Alignment from CESAR AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGg ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagAGAGCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGggtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc Alignment from Spaln_aa2Genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagAGAGCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGGgtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc Alignment from Spaln_nt2Genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagAGAGCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGGgtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc Alignment from Pairagon AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagAGAGCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGGgtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc Alignment from Exonerate_protein2genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagAGAGCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGGgtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc Alignment from Exonerate_coding2genome AGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagAGAGCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGGgtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc Alignment from GeneWise CTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGG ctcatctccccagtccaccctgatgtttagtgtgcctgcttcccctgcagagagCTGAAATTATAAATCATCTGGCTGACTTGCTGACAGAGCAGCGGGAAGAGATCCTGCTAGCCACCAAAAAAGACTTGGAGGAGGCAGAGGgtaagaaggtatctttacgacttcttgagggtagagtgtagtaacaaacc #### Aldh18a1_ID7977_6 --> 0 - 1 Original Alignment GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAg cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGggtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg Alignment from CESAR GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAg cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGggtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg Alignment from Spaln_aa2Genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGGgtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg Alignment from Spaln_nt2Genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGGgtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg Alignment from Pairagon GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGGgtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg Alignment from Exonerate_protein2genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGGgtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg Alignment from Exonerate_coding2genome GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGGgtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg Alignment from GeneWise GTGATTAGTGTTAAGGATAATGATAGCCTGGCTGCCCGGCTGGCCGTGGAGATGAAAACCGACCTCTTGATTGTCCTCTCGGACGTAGAAG cgttcaaatctgtcaaaaaccgagttggccattcatggctctgtctgcagGTGATTAGTGTTAAGGATAATGATAGTCTGGCTGCCCGACTGGCTGTTGAGATGAAAACTGACCCCTTGATTGTCCTCTCAGATGTAGAGGgtaaggctgaatcttctttttgcaggcacagatgagcagatgagcagcgg #### Aldh18a1_ID7981_2 --> 2 - 0 Original Alignment atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagatCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact Alignment from CESAR atCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagatCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact Alignment from Spaln_aa2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagATCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact Alignment from Spaln_nt2Genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagATCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact Alignment from Pairagon ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagATCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact Alignment from Exonerate_protein2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagATCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact Alignment from Exonerate_coding2genome ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagATCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact Alignment from GeneWise ATCGTGTCCAGCCCTCAGCTATTAGACATGTTCGTTCTTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG aaccaaagtcaatctttgagtctccttatatctcagcttttcctcaccagATCGTGTCCAACCTTCTGCTATCAGGCATATTCGCTCGTGGAGCAATATCCCATTTATCACAGTGCCCCTCAGCCGTGCCCATGGCAAGCCCTTTGCCCACCGGAGTGAGCTGAAGCATGCAAAGCGAATTGAAGTGAAGCTTGGCAGTGCTGTGGTTGCCAGAGGAGATGAGTGTGGCTCAGCATTGGGACGCCTGGCACCTATAGTTGAACAGgtaagggtcatgtgaaataattggtgaaataattgcaagataattgcact #### Aldh1a1_ID4790_3 --> 0 - 0 Original Alignment GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTGACTTAATGGAGAGAGATCGTCTGCTGCTGGCT tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGGCTTTCCAAATTGCCTCTCCATGGTGCATAACAGATGCTTCAGAGAGGGGCCATTTACTCAACAAACTAGCAGGATTAATGGAGCGAGACCGGCTATTACTGGCTgtactgatggaattttaaacaacaggctttccaaattgcctctccatggt Alignment from CESAR GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTGACTTAATGGAGAGAGATCGTCTGCTGCTGGCT tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGGCTTTCCAAATTGCCTCTCCATGGTGCATAACAGATGCTTCAGAGAGGGGCCATTTACTCAACAAACTAGCAGGATTAATGGAGCGAGACCGGCTATTACTGGCTgtactgatggaattttaaacaacaggctttccaaattgcctctccatggt Alignment from Spaln_aa2Genome GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAG GCTTTCCAGATTGGCTCTCCATGGC tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGgctttccaaattgcctctccatggtgcataacagatgcttcagagaggggccatttactcaacaaactagcaggattaatggagcgagaccggctattactggctgtactgatggaattttaaacaacagGCTTTCCAAATTGCCTCTCCATGGT Alignment from Spaln_nt2Genome GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTGACTTAATGGAGAGAGATCGTCTGCTGCTGGCT tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGGCTTTCCAAATTGCCTCTCCATGGTGCATAACAGATGCTTCAGAGAGGGGCCATTTACTCAACAAACTAGCAGGATTAATGGAGCGAGACCGGCTATTACTGGCTgtactgatggaattttaaacaacaggctttccaaattgcctctccatggt Alignment from Pairagon GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTGACTTAATGGAGAGAGATCGTCTGCTGCTGGCT tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGGCTTTCCAAATTGCCTCTCCATGGTGCATAACAGATGCTTCAGAGAGGGGCCATTTACTCAACAAACTAGCAGGATTAATGGAGCGAGACCGGCTATTACTGGCTgtactgatggaattttaaacaacaggctttccaaattgcctctccatggt Alignment from Exonerate_protein2genome GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTGACTTAATGGAGAGAGATCGTCTGCTGCTGGCT tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGGCTTTCCAAATTGCCTCTCCATGGTGCATAACAGATGCTTCAGAGAGGGGCCATTTACTCAACAAACTAGCAGGATTAATGGAGCGAGACCGGCTATTACTGGCTgtactgatggaattttaaacaacaggctttccaaattgcctctccatggt Alignment from Exonerate_coding2genome GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTGACTTAATGGAGAGAGATCGTCTGCTGCTGGCT tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGGCTTTCCAAATTGCCTCTCCATGGTGCATAACAGATGCTTCAGAGAGGGGCCATTTACTCAACAAACTAGCAGGATTAATGGAGCGAGACCGGCTATTACTGGCTgtactgatggaattttaaacaacaggctttccaaattgcctctccatggt Alignment from GeneWise GCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTGACTTAATGGAGAGAGATCGTCTGCTGCTGGCT tgtatttggtcttctgaaccccctttgaatcaaactttttacattaccagGCTGATCTCGATGAAGCTGTCAAAGCTGCAAGACAGGCTTTCCAAATTGCCTCTCCATGGTGCATAACAGATGCTTCAGAGAGGGGCCATTTACTCAACAAACTAGCAGGATTAATGGAGCGAGACCGGCTATTACTGGCTgtactgatggaattttaaacaacaggctttccaaattgcctctccatggt #### Aldh1a1_ID4797_10 --> 0 - 0 Original Alignment ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt Alignment from CESAR ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt Alignment from Spaln_aa2Genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt Alignment from Spaln_nt2Genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt Alignment from Pairagon ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt Alignment from Exonerate_protein2genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt Alignment from Exonerate_coding2genome ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt Alignment from GeneWise ATTGACAAGGAACAACATGATAAAATACTCGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGGAG gtggatgctggcttatctctcaacataatgctctacccccctccctccagATTGACAAAGAGCAACATGATAAAATACTTGATCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAACTGGAGTGTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAATGTAACTGATGAGATGCGAATTGCCAAAGAGGAGgtgaggtcttgagttgcttgttttagtcatagcaccaggtcatgttttgt #### Aldh1a1_ID4799_12 --> 1 - 2 Original Alignment gGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAAct tcaaactcagtctcagggataaaaggtatttttttttttttggcccttaggGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAActgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata Alignment from CESAR gGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAAct tcaaactcagtctcagggataaaaggtatttttttttttttggcccttaggGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAActgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata Alignment from Spaln_aa2Genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT tcaaactcagtctcagggataaaaggtatttttttttttttggcccttagGGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAACTgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata Alignment from Spaln_nt2Genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT tcaaactcagtctcagggataaaaggtatttttttttttttggcccttagGGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAACTgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata Alignment from Pairagon GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT tcaaactcagtctcagggataaaaggtatttttttttttttggcccttagGGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAACTgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata Alignment from Exonerate_protein2genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT tcaaactcagtctcagggataaaaggtatttttttttttttggcccttagGGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAACTgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata Alignment from Exonerate_coding2genome GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT tcaaactcagtctcagggataaaaggtatttttttttttttggcccttagGGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAACTgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata Alignment from GeneWise GGTTAACTGCTATATGATGTTGTCAGCCCAGTGCCCCTTCGGTGGATTCAAGATGTCTGGAAATGGAAGAGAACT tcaaactcagtctcagggataaaaggtatttttttttttttggcccttagGGTGAACTGCTATATGATGTTATCAGCCCAGTGTCCCTTTGGTGGGTTCACAATGTCTGGTAATGGGAGAGAACTgtaaaggaagctccagattacagggcctatttgataaaacatacgcaata #### Aldh3b2_ID236_2 --> 1 - 0 Original Alignment gGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacaggGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa Alignment from CESAR gGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacaggGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa Alignment from Spaln_aa2Genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacagGGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa Alignment from Spaln_nt2Genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacagGGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa Alignment from Pairagon GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacagGGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa Alignment from Exonerate_protein2genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacagGGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa Alignment from Exonerate_coding2genome GGCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacagGGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa Alignment from GeneWise GCAGGCCCCTCTGAGGCCACACTGCACAGCCTGCGGGAGGCCTTCAATGCAGGGCGGACTCGGCCTACTGAGTTTCGGACTGCACAGCTGCGGAGCCTGGGTCGCTTCTTGCAGGAAAACAAAGAGCTGCTGCAAGATGCACTGGCTAAGGACGTGGGCAAG atttgatgcctgcaaggcaggcccctctctgctcacggacttccccacaggGCAGGCCCCTCTGGGGCCACGCTACACAGCCTGCAGGAGGCCCTCAACGCAGGACGGACTCGACCTTCTGAATTTCGGACTGCACAGCTACGGAGCTTGGGTCGCTTCCTACAGGAGAACAAAGAGATACTGCAAGACACATTAACAAAGGATGTGGGCAAGgtgagtgcgcaggttatgtggtatccagattgaatggtttctggtggtaa #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTC------TACAATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTggtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTggtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTATGAT---GATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGT------TTTGCAAAATTCTATCACTCGTTTCT------ACAATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg Alignment from GeneWise TCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggcttgctaggtgaacaggggactaccggaccttcttttaggaagCCCTCGAGTAGGCAAGATGGTGATGACTGCTACGGCCAATCACCTGACCCCCACCTCCCTGCAACTAGGAGGCAAGAATCCCTGCTAT---GATGATAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGGCAGACCTGTGTGGCGCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTT------TTGCAAAATTCTATCACTCGTTTCTAC------AATCCACAGACTCCACCTAACCTAGGAAGGACAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGTGCAGAGTGACGAGGGAGGGTGTTGTATTGgtcagtcccttgctatgtctgtggccccagcatagggcccatggcatccg #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from CESAR GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_aa2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_nt2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Pairagon GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_coding2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc #### Ankrd13d_ID468_5 --> 2 - 1 Original Alignment taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gatctattttggtggggccagatacccagcgtgccctggtctcccggcagtaCCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATggtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca Alignment from CESAR taCCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGg gatctattttggtggggccagatacccagcgtgccctggtctcccggcagtaCCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATggtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca Alignment from Spaln_aa2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctattttggtggggccagatacccagcgtgccctggtctcccggcagTACCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATGgtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca Alignment from Spaln_nt2Genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctattttggtggggccagatacccagcgtgccctggtctcccggcagTACCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATGgtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca Alignment from Pairagon TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctattttggtggggccagatacccagcgtgccctggtctcccggcagTACCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATGgtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca Alignment from Exonerate_protein2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctattttggtggggccagatacccagcgtgccctggtctcccggcagTACCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATGgtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca Alignment from Exonerate_coding2genome TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctattttggtggggccagatacccagcgtgccctggtctcccggcagTACCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATGgtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca Alignment from GeneWise TACCTCTTGTGTCCAAGATGTGCCCGAGCGATGTGTACCGTGTGTGGAAGCGGGGTGAGAGTCTGCGGGTGGACACTAGTCTCTTGGGCTTTGAGCACATGACCTGGCAGCGTGGCCGAAGGAGCTTCATCTTCAGGGGTCAGG gatctattttggtggggccagatacccagcgtgccctggtctcccggcagTACCTCTTGTGTCCAAGATGTGCACAAGTGATGTGTACCGTGTGTGGAAACGTGGTGAAAGCCTACGAGTGGATGCTAGTCTCCTAGGTTTTGAGCACATGACCTGGCAGCGTGGTCAGAGGAGCTACATTTTCAGGGATCATGgtaagtgtcatccaccccggcaagcaggaactttggtgtagtgggtttca #### Ankrd2_ID8368_2 --> 0 - 0 Original Alignment AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTTGAG------AAACATCTT------CAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt Alignment from CESAR AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTT------GAGAAACATCTT------CAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt Alignment from Spaln_aa2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTT------GAGAAACATCTT------CAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt Alignment from Spaln_nt2Genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTTGAGAAA--------CATC----TTCAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt Alignment from Pairagon AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTTGAGAAACATC------------TTCAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt Alignment from Exonerate_protein2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTTGAGAAACAT------------CTTCAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt Alignment from Exonerate_coding2genome AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTTGAGAAACAT------------CTTCAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt Alignment from GeneWise AAACTTCGAAGATCCGCTCCTGGGAAGCTGTCCATGGACATGCTAGTGCTAGAGGAAGAGAAGCGCCTCGGGGTTCAGAGTCCTGCTTTACAAAAGGTTAAG aaggatcaaaaatcctatcattagtatatgtgatattttgttctcgttagAAGCTTCGAAGATCTGCTCCTGGGAAATTATCGATGGACATGCTAGTCGTTGAGAAACAT------------CTTCAGAGGCCAGCTTTACAAGGGTTCAAAgtatccgggttgatgagagaaggagtatggacttgggcaacaggtgtgtt #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG cttgcattcctttacattaattgctaggctatgaccctctctatctacagGAAGGAGACAGTGCTCTACATGATGCTGTGAAGATCAACTACTACAAAAACATCAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCTAAGAACCTAgtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG cttgcattcctttacattaattgctaggctatgaccctctctatctacagGAAGGAGACAGTGCTCTACATGATGCTGTGAAGATCAACTACTACAAAAACATCAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCTAAGAACCTAgtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG cttgcattcctttacattaattgctaggctatgaccctctctatctacagGAAGGAGACAGTGCTCTACATGATGCTGTGAAGATCAACTACTACAAAAACATCAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCTAAGAACCTAgtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGC---TAAGAACCTG cttgcattcctttacattaattgctaggctatgaccctctctatctacagGAAGGAGACAGTGCTCTACATGATGCTGTGAAGATCAACTACTACAAAAACATCAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCTAAGAACCTAgtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG cttgcattcctttacattaattgctaggctatgaccctctctatctacagGAAGGAGACAGTGCTCTACATGATGCTGTGAAGATCAACTACTACAAAAACATCAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCTAAGAACCTAgtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATG---GCTAAGAACCTG cttgcattcctttacattaattgctaggctatgaccctctctatctacagGAAGGAGACAGTGCTCTACATGATGCTGTGAAGATCAACTACTACAAAAACATCAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCTAAGAACCTAgtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg Alignment from Exonerate_coding2genome cttgcattcctttacattaattgctaggctatgaccctctctatctacaggaaggagacagtgctctacatgatgctgtgaagatcaactactacaaaaacatcaaactgttgctcttacatggggcagacatgatggcagctaagaacctagtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGACATGATGGCT---AAGAACCTG cttgcattcctttacattaattgctaggctatgaccctctctatctacagGAAGGAGACAGTGCTCTACATGATGCTGTGAAGATCAACTACTACAAAAACATCAAACTGTTGCTCTTACATGGGGCAGACATGATGGCAGCTAAGAACCTAgtacgtttagtcttgaggcttggtggtttggatggccccacaaggtgctg #### Anxa1_ID4760_10 --> 2 - 0 Original Alignment tgAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagcaAAGTGTACTACAAGCACGCCCGTCTTCTTTGCTGAGAAGTCATATGAGGCTATGAAAgtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga Alignment from CESAR tgAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagcaAAGTGTACTACAAGCACGCCCGTCTTCTTTGCTGAGAAGTCATATGAGGCTATGAAAgtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga Alignment from Spaln_aa2Genome TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagCAAAGTGTACTACAAGCACGCCCGTCTTCTTTGCTGAGAAGTCATATGAGGCTATGAAAgtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga Alignment from Spaln_nt2Genome TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagCAAAGTGTACTACAAGCACGCCCGTCTTCTTTGCTGAGAAGTCATATGAGGCTATGAAAgtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga Alignment from Pairagon TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagCAAAGTGTACTACAAGCACGCCCGTCTTCTTTGCTGAGAAGTCATATGAGGCTATGAAAgtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga Alignment from Exonerate_protein2genome TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagCAAAGTGTACTACAAGCACGCCCGTCTTCTTTGCTGAGAAGTCATATGAGGCTATGAAAgtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga Alignment from Exonerate_coding2genome cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagcaaagtgtactacaagcacgcccgtcttctttgctgagaagtcatatgaggctatgaaagtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga Alignment from GeneWise TGAAGTGTGCCACCAGCACTCCAGCTTTCTTTGCCGAGAAGCTGTACGAAGCCATGAAG cattgtccaattttaaatatggcttttctcctgtctcctgactcctacagCAAAGTGTACTACAAGCACGCCCGTCTTCTTTGCTGAGAAGTCATATGAGGCTATGAAAgtgagttcctccgggccacctaaatttagatgtgatatgctgagtgagga #### Anxa1_ID4761_9 --> 2 - 1 Original Alignment tgTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCg taagttccctatgtactttgattatgtgtctccctctgccttttctacagtgTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTggtaagagatgatgcagggataaaacgggaagaggtagtgctgttctatgt Alignment from CESAR tgTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCg taagttccctatgtactttgattatgtgtctccctctgccttttctacagtgTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTggtaagagatgatgcagggataaaacgggaagaggtagtgctgttctatgt Alignment from Spaln_aa2Genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG taagttccctatgtactttgattatgtgtctccctctgccttttctacagTGTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTGgtaagagatgatgcagggataaaacgggaagaggtagtgctgttctatgt Alignment from Spaln_nt2Genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG taagttccctatgtactttgattatgtgtctccctctgccttttctacagTGTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTGgtaagagatgatgcagggataaaacgggaagaggtagtgctgttctatgt Alignment from Pairagon TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG taagttccctatgtactttgattatgtgtctccctctgccttttctacagTGTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTGgtaagagatgatgcagggataaaacgggaagaggtagtgctgttctatgt Alignment from Exonerate_protein2genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG taagttccctatgtactttgattatgtgtctccctctgccttttctacagTGTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTGgtaagagatgatgcagggataaaacgggaagaggtagtgctgttctatgt Alignment from Exonerate_coding2genome TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCGTGAAG taagttccctatgtactttgattatgtgtctccctctgccttttctacagTGTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTGGTAAGagatgatgcagggataaaacgggaagaggtagtgctgttctatgt Alignment from GeneWise TGTTTCAGAATTACGGAAAGTACAGTCAACATGACATGAACAAAGCTCTGGATCTGGAACTGAAGGGTGACATTGAGAAGTGCCTCACAACCATCG taagttccctatgtactttgattatgtgtctccctctgccttttctacagTGTTTCAGAATTATGGAAAGTACAGCCAACATGACATGAACAAAGCTCTGGATCTAGAGCTGAAGGGTGATATCGAAAAGTGCCTGACGACTGTTGgtaagagatgatgcagggataaaacgggaagaggtagtgctgttctatgt #### Anxa1_ID4763_7 --> 0 - 0 Original Alignment GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc Alignment from CESAR GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc Alignment from Spaln_aa2Genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc Alignment from Spaln_nt2Genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc Alignment from Pairagon GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc Alignment from Exonerate_protein2genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc Alignment from Exonerate_coding2genome GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc Alignment from GeneWise GGTGACCGTTGTCAGGACTTGAGTGTGAATCAAGATTTGGCTGATACAGATGCCAGG aacaaataccaaccagtcttgtatagcactagcctctcatctcctcgcagGGTGACCGTTGTCACGGCTTGAGTGTGAATCAGGATCTGTCTGATACAGAAGTCAGGgtgagaaaaggaactcctacatctttatcccctatcatgaagcatctctc #### Apba1_ID5231_4 --> 2 - 0 Original Alignment ttCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCC---AAAAATGTACGCATGATGCAGGCCCAGGAAGCAGTA------------AGCCGGATCAAG gctgtattctccctacaacacagcaagtactcccggcttttgtcttccagttCCTGGTCTGTGTGACCCTGAAGATTTGATTGGAGGGATCATTTTTGTTGCCAATTACCTTGGCTCAACCCAACTACTGTCAGACAAAACTCCCTCCTCCAAAAATGTTCACATGATGCAGGCC------CCTGTGCAGGCTCCTGTAAGCCGGATCAAGgtaatcagaggaggagggggggtctttgtgcggggggacctcagcaggcg Alignment from CESAR ttCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCC---TCCAAAAATGTACGCATGATGCAGGCC------CAGGAAGCAGTAAGCCGGATCAAG gctgtattctccctacaacacagcaagtactcccggcttttgtcttccagttCCTGGTCTGTGTGACCCTGAAGATTTGATTGGAGGGATCATTTTTGTTGCCAATTACCTTGGCTCAACCCAACTACTGTCAGACAAAACTCCCTCCTCCAAAAATGTTCACATGATGCAGGCCCCTGTGCAGGCTCCTGTAAGCCGGATCAAGgtaatcagaggaggagggggggtctttgtgcggggggacctcagcaggcg Alignment from Spaln_aa2Genome TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCC---TCCAAAAATGTACGCATGATGCAGGCC------CAGGAAGCAGTAAGCCGGATCAAG gctgtattctccctacaacacagcaagtactcccggcttttgtcttccagTTCCTGGTCTGTGTGACCCTGAAGATTTGATTGGAGGGATCATTTTTGTTGCCAATTACCTTGGCTCAACCCAACTACTGTCAGACAAAACTCCCTCCTCCAAAAATGTTCACATGATGCAGGCCCCTGTGCAGGCTCCTGTAAGCCGGATCAAGgtaatcagaggaggagggggggtctttgtgcggggggacctcagcaggcg Alignment from Spaln_nt2Genome TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCC---TCCAAAAATGTACGCATGATGCAGGCCC------AGGAAGCAGTAAGCCGGATCAAG gctgtattctccctacaacacagcaagtactcccggcttttgtcttccagTTCCTGGTCTGTGTGACCCTGAAGATTTGATTGGAGGGATCATTTTTGTTGCCAATTACCTTGGCTCAACCCAACTACTGTCAGACAAAACTCCCTCCTCCAAAAATGTTCACATGATGCAGGCCCCTGTGCAGGCTCCTGTAAGCCGGATCAAGgtaatcagaggaggagggggggtctttgtgcggggggacctcagcaggcg Alignment from Pairagon TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTC---CCTCCAAAAATGTACGCATGATGCAGGCC------CAGGAAGCAGTAAGCCGGATCAAG gctgtattctccctacaacacagcaagtactcccggcttttgtcttccagTTCCTGGTCTGTGTGACCCTGAAGATTTGATTGGAGGGATCATTTTTGTTGCCAATTACCTTGGCTCAACCCAACTACTGTCAGACAAAACTCCCTCCTCCAAAAATGTTCACATGATGCAGGCCCCTGTGCAGGCTCCTGTAAGCCGGATCAAGgtaatcagaggaggagggggggtctttgtgcggggggacctcagcaggcg Alignment from Exonerate_protein2genome TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCC---TCCAAAAATGTACGCATGATGCAGGCC------CAGGAAGCAGTAAGCCGGATCAAG gctgtattctccctacaacacagcaagtactcccggcttttgtcttccagTTCCTGGTCTGTGTGACCCTGAAGATTTGATTGGAGGGATCATTTTTGTTGCCAATTACCTTGGCTCAACCCAACTACTGTCAGACAAAACTCCCTCCTCCAAAAATGTTCACATGATGCAGGCCCCTGTGCAGGCTCCTGTAAGCCGGATCAAGgtaatcagaggaggagggggggtctttgtgcggggggacctcagcaggcg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCCTGGACCGTGCGACCCTGAAGACTTGATCGATGGAATTATTTTTGCTGCCAATTACCTTGGTTCCACTCAGCTACTCTCAGACAAAACTCCCTCC---AAAAATGTACGCATGATGCAGGCC------CAGGAAGCAGTAAGCCGGATCAAG gctgtattctccctacaacacagcaagtactcccggcttttgtcttccagTTCCTGGTCTGTGTGACCCTGAAGATTTGATTGGAGGGATCATTTTTGTTGCCAATTACCTTGGCTCAACCCAACTACTGTCAGACAAAACTCCCTCCTCCAAAAATGTTCACATGATGCAGGCCCCTGTGCAGGCTCCTGTAAGCCGGATCAAGgtaatcagaggaggagggggggtctttgtgcggggggacctcagcaggcg #### Arhgap19_ID8262_11 --> 0 - 1 Original Alignment TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAggtcagtggatgccttctactcattccttcttaggtttttgtgttttcttg Alignment from CESAR TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAg tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAggtcagtggatgccttctactcattccttcttaggtttttgtgttttcttg Alignment from Spaln_aa2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAGgtcagtggatgccttctactcattccttcttaggtttttgtgttttcttg Alignment from Spaln_nt2Genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAG GATTCTTT tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAGgtcagtggatgccttctactcattccttcttagGTTTTTGTgttttcttg Alignment from Pairagon TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGG--------------------ATTCTTT tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAGGTCAGTGGATGCCTTCTACTCATTCCTTcttaggtttttgtgttttcttg Alignment from Exonerate_protein2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAGGTcagtggatgccttctactcattccttcttaggtttttgtgttttcttg Alignment from Exonerate_coding2genome TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGA tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAGGTcagtggatgccttctactcattccttcttaggtttttgtgttttcttg Alignment from GeneWise TTCTTCTCTGGCTCTCCAGCTGGGACAGTGACACCAACAAGATTGAAATGGTCTGAGGCGAAGAGAGAGGGGAGAAAAGGATTCTTT tagctttgactgctgaccatatggaccacacaccttattgtgtctgacagTTCTTCTCTGGCTCTCCAGCTGGAACAGTGACACCAACAAGATTGAAATGGTCTGAGGCAAAAAGAGAGGGGCGAAAAGGTCAGTGGatgccttctactcattccttcttaggtttttgtgttttcttg #### Arhgap19_ID8266_7 --> 0 - 0 Original Alignment GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg Alignment from CESAR GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg Alignment from Spaln_aa2Genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg Alignment from Spaln_nt2Genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg Alignment from Pairagon GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg Alignment from Exonerate_protein2genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg Alignment from Exonerate_coding2genome GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg Alignment from GeneWise GCTCCTGCTTATATTCGCGAATGTGCCAGATTATACTATTTGGGCTCCAGAACTCAAATGTCAAAG cagtgagtagaatgactgctgagaccggatgaccattctgtctgtttcagGCCCCTGCTTATATTTGTGAATGTGTCAGGTTATTCTATTTCGGCTCCAGAACCCAAATGGTAAAGgtgagtgggctggggccgagagctaacaacgaaacagaggaggatttgtg #### Arhgap19_ID8270_3 --> 2 - 1 Original Alignment aaAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAa tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagagAAAGGGGTGGTCTTTGGGTCTCCACTGACTGAGGAAGGCATTGCCCACATTTATCAGCTTATAGAATATTTACACAAGagtaggtataactgtcatggacttattgtgagactcctaaaggttggggac Alignment from CESAR aaAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAa tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagagAAAGGGGTGGTCTTTGGGTCTCCACTGACTGAGGAAGGCATTGCCCACATTTATCAGCTTATAGAATATTTACACAAGagtaggtataactgtcatggacttattgtgagactcctaaaggttggggac Alignment from Spaln_aa2Genome tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagagaaaggggtggtctttgggtctccactgactgaggaaggcattgcccacatttatcagcttatagaatatttacacaagagtaggtataactgtcatggacttattgtgagactcctaaaggttggggac Alignment from Spaln_nt2Genome AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagAGAAAGGGGTGGTCTTTGGGTCTCCACTGACTGAGGAAGGCATTGCCCACATTTATCAGCTTATAGAATATTTACACAAGAgtaggtataactgtcatggacttattgtgagactcctaaaggttggggac Alignment from Pairagon AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagAGAAAGGGGTGGTCTTTGGGTCTCCACTGACTGAGGAAGGCATTGCCCACATTTATCAGCTTATAGAATATTTACACAAGAgtaggtataactgtcatggacttattgtgagactcctaaaggttggggac Alignment from Exonerate_protein2genome tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagagaaaggggtggtctttgggtctccactgactgaggaaggcattgcccacatttatcagcttatagaatatttacacaagagtaggtataactgtcatggacttattgtgagactcctaaaggttggggac Alignment from Exonerate_coding2genome tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagagaaaggggtggtctttgggtctccactgactgaggaaggcattgcccacatttatcagcttatagaatatttacacaagagtaggtataactgtcatggacttattgtgagactcctaaaggttggggac Alignment from GeneWise tcgtacatttactgtgattatcaccagactgcttttggttgcttttttagagaaaggggtggtctttgggtctccactgactgaggaaggcattgcccacatttatcagcttatagaatatttacacaagagtaggtataactgtcatggacttattgtgagactcctaaaggttggggac #### Arl2_ID1475_4 --> 0 - 0 Original Alignment CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa Alignment from CESAR CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa Alignment from Spaln_aa2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa Alignment from Spaln_nt2Genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa Alignment from Pairagon CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa Alignment from Exonerate_protein2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa Alignment from Exonerate_coding2genome CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa Alignment from GeneWise CGCCTGGCTGGAGCAACCCTCCTCATCTTTGCCAACAAGCAGGACCTGCCTGGAGCACTGTCCTGTAATGCTATTCAGGAG acattgggacctgtaggtagataaatcaaaaaaaataaaatctttttcagCGCCTGGCTGGAGCAACTCTCCTTATCTTTGCCAACAAGCAGGACCTTCCTGGAGCACTGTCCTGTAATGCTATTCAGGAGgtaaactaggccaggggttggtgtctaggacactcaagcaatatgtataa #### Asah2_ID6668_6 --> 1 - 2 Original Alignment gTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCag gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttaggTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTaggtgggctgtctcttactctacttaactgctcccactggtgagtataatta Alignment from CESAR gTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCag gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttaggTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTaggtgggctgtctcttactctacttaactgctcccactggtgagtataatta Alignment from Spaln_aa2Genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTAGgtgggctgtctcttactctacttaactgctcccactggtgagtataatta Alignment from Spaln_nt2Genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTAGgtgggctgtctcttactctacttaactgctcccactggtgagtataatta Alignment from Pairagon GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTAGgtgggctgtctcttactctacttaactgctcccactggtgagtataatta Alignment from Exonerate_protein2genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTAGgtgggctgtctcttactctacttaactgctcccactggtgagtataatta Alignment from Exonerate_coding2genome GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTAGgtgggctgtctcttactctacttaactgctcccactggtgagtataatta Alignment from GeneWise GTATTCTTCAAACACAGACAAGGAAATGCTGGTCTTGAAACTGGTGGATTTGAATGGAGAAGACTTGGGTCTTATCAG gttgaccctgactgcacatgtgtaatggggttttgttgtgtttgctttagGTATTCTTCAAACACAGACAAGGAAATGCTGGTCCTGAGACTAGTGGATTTGAATGGAGAAGACTTGGGTCTTATTAGgtgggctgtctcttactctacttaactgctcccactggtgagtataatta #### Asrgl1_ID2594_6 --> 2 - 1 Original Alignment gaGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCC------------------AGACTTGCCCTCTTCCATGTAGAGCAAg cttacacacccgcgtatgacgactgtgttcacactctatatttgaactagggGCTGGAGGTTATGCAGGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGggtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga Alignment from CESAR gaGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAG------------------GTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAg cttacacacccgcgtatgacgactgtgttcacactctatatttgaactagggGCTGGAGGTTATGCAGGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGggtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga Alignment from Spaln_aa2Genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTG------------------AAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG cttacacacccgcgtatgacgactgtgttcacactctatatttgaactagGGGCTGGAGGTTATGCAGGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGGgtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga Alignment from Spaln_nt2Genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTAT------------------CCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG cttacacacccgcgtatgacgactgtgttcacactctatatttgaactagGGGCTGGAGGTTATGCAGGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGGgtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga Alignment from Pairagon GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTAT------------------CCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG cttacacacccgcgtatgacgactgtgttcacactctatatttgaactagGGGCTGGAGGTTATGCAGGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGGgtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga Alignment from Exonerate_protein2genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG cttacacacccgcgtatgacgactgtgttcacactctatatttgaactaggggctggaggttatgcagGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGGgtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga Alignment from Exonerate_coding2genome GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTGAAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG cttacacacccgcgtatgacgactgtgttcacactctatatttgaactaggggctggaggttatgcagGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGGgtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga Alignment from GeneWise GAGCTGGAGGTTACGCAGATAATAACCTTGGAGCCGTTTCAACCACAGGACATGGGGAAAGTATCCTG------------------AAGGTGAATCTGGCCAGACTTGCCCTCTTCCATGTAGAGCAAG cttacacacccgcgtatgacgactgtgttcacactctatatttgaactagGGGCTGGAGGTTATGCAGGGAATAATCTTGGAGCTGTTTCAACCACAGGACATGGGGAAACTGTGTTAAAGGTGAACCTTGCCATAAAGGTGAATCTTGCCGGACTTGCCTTGTTCCATGTTCATCAGGgtaaaaagcaaatgaatcaggtatatagcttggaggacaaagtacgtaga #### Atad1_ID6726_4 --> 2 - 1 Original Alignment gtGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAg aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaaggtGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAggtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac Alignment from CESAR gtGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAg aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaaggtGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAggtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac Alignment from Spaln_aa2Genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaagGTGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAGgtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac Alignment from Spaln_nt2Genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaagGTGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAGgtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac Alignment from Pairagon GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaagGTGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAGgtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac Alignment from Exonerate_protein2genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaagGTGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAGgtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac Alignment from Exonerate_coding2genome GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaagGTGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAGgtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac Alignment from GeneWise GTGTTCTTCTGTATGGACCTCCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCCAAAGAAGCAGGCTGTCGGTTCATTAACCTCCAGCCTTCGACACTGACTGATAAGTGGTATGGAGAATCTCAAAAACTGGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCTATCATATTTATTGATGAAATAG aggagtggacttaagtgctgtacacagactgttttttttttcatgcgaagGTGCTCTTCTGTATGGACCACCAGGCTGTGGGAAAACATTAATTGCCAAAGCAACAGCGAAAGAAGCGGGCTGTCGGTTCATTAACCTCCAGCCTTCAACACTGACTGACAAATGGTATGGAGAATCTCAAAAACTCGCTGCTGCTGTTTTCTCCCTTGCCATAAAGCTACAGCCTTCCATCATATTTATTTATGAAATAGgtgagatacttcttcatgtgggtgaataccacaccgcaaagcctttagac #### Atl3_ID2161_3 --> 0 - 0 Original Alignment AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa Alignment from CESAR AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa Alignment from Spaln_aa2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa Alignment from Spaln_nt2Genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa Alignment from Pairagon AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa Alignment from Exonerate_protein2genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa Alignment from Exonerate_coding2genome AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa Alignment from GeneWise AAGGAAGGTGGTCATTCAGACTGGTTGGGTGACCCAGAAGAACCTCTGACAGGATTTTCATGGCGAGGAGGCTCTGATCCAGAAACTACTGGGATTCAGATTTGGAGTGAAGTTTTCACTGTGAAGAAGCCATGTGGAAAAAAG cattctgtgtgcagcccagtatgttatcttatgctcctttcctctcttagAGAGAGGGTGGGCATTCAGACTGGTTAGGTGACCCAGAAGAGCCTCTAATAGGATTTTCATGGCGTGGAGGGTCTGACCCAGAGACAACAGGGATTCAAATTTGGAGTGAAGTTTTTACAGCAAAGAAGCCATGTGGAAGAAAGgtaatcatgtttgatagaaaaaaatctagatttgacaagagaatgactaa #### Atl3_ID2165_7 --> 0 - 0 Original Alignment ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt Alignment from CESAR ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt Alignment from Spaln_aa2Genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt Alignment from Spaln_nt2Genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt Alignment from Pairagon ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt Alignment from Exonerate_protein2genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt Alignment from Exonerate_coding2genome ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt Alignment from GeneWise ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT ttataaggctactgtaatacaacatcttctcctggcctctctcttcccagACACTCATGTTTTTGATTCGAGATTGGATCTTCCCATTTGAATACAACTATGGATTGCAACGGGGGATGGCTTTCCTGGACAAGCGCTTACATgtaggtagaagatgagggtcccagacagtcccactttttgctccagaatt #### Atl3_ID2166_8 --> 0 - 1 Original Alignment GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAggtatgtttgacattattagagtctgtgtgttggattgcttggattgttga Alignment from CESAR GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAg tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAggtatgtttgacattattagagtctgtgtgttggattgcttggattgttga Alignment from Spaln_aa2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAGgtatgtttgacattattagagtctgtgtgttggattgcttggattgttga Alignment from Spaln_nt2Genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAGgtatgtttgacattattagagtctgtgtgttggattgcttggattgttga Alignment from Pairagon GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAGgtatgtttgacattattagagtctgtgtgttggattgcttggattgttga Alignment from Exonerate_protein2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAGgtatgtttgacattattagagtctgtgtgttggattgcttggattgttga Alignment from Exonerate_coding2genome GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAGgtatgtttgacattattagagtctgtgtgttggattgcttggattgttga Alignment from GeneWise GTGAAGGAACATCAACATGAAGAAATTCAGAATGTGAGAAATCATATTCACTCATGTTTCTCCGATGTCACCTGTTTTCTCTTACCACATCCAGGGCTCCAGGTGGCCACAAGCCCCAACTTTGATGGGAAATTGAAAG tgaatcaaattcctcattttgtcatcagatttgatgtcattttcttacagGTGAAGGAGCATCAACATGAAGAGAATCAAAATGTGAGAAACCACATCTATTCATGTTTTTCTGATGTCGCCTGTTATCTCTTACCACATCCTGGACTCCAGGTGGCGACAAGCCCCAACTTTGATGGGAAACTGAAAGgtatgtttgacattattagagtctgtgtgttggattgcttggattgttga #### Atrnl1_ID12430_3 --> 1 - 2 Original Alignment tCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTag ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagtCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTaggtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt Alignment from CESAR tCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTag ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagtCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTaggtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt Alignment from Spaln_aa2Genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt Alignment from Spaln_nt2Genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt Alignment from Pairagon TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt Alignment from Exonerate_protein2genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt Alignment from Exonerate_coding2genome TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt Alignment from GeneWise TCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGCAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAG ggaaaacacctgatatctatttaaattgaatttgtatgctttacccccagTCCAAATGCAGTGCTAAGGTTAAGATTCAATCATTTTGCTACAGAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCTATATACGCACCTTTAGTAGCTGTACTTAGgtaatcaatcaccagatgaagaaaagctgctgcatagattcctatattgt #### Atrnl1_ID12436_9 --> 2 - 2 Original Alignment ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagccTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTtggtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc Alignment from CESAR ccTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTtg tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagccTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTtggtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc Alignment from Spaln_aa2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagCCTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc Alignment from Spaln_nt2Genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagCCTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc Alignment from Pairagon CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagCCTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc Alignment from Exonerate_protein2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagCCTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc Alignment from Exonerate_coding2genome CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagCCTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc Alignment from GeneWise CCTCAAACACTTGGCTAGTTCCAGAAACGAAAGGAGCCATTGTGCAAGGTGGATATGGCCACACAAGTGTGTATGACGAAGTGACCAAGTCCATCTATGTTCACGGAGGCTACAAAGCATTGCCTGGCAATAAGTACGGGCTGGTGGACGACCTCTATAAGTACGAAGTCAACACCAGGACTTG tttttggtggtttacacatcctccttatttcctatggaaatgtcttttagCCTCCAACACTTGGCTAGTTCCGGAAACAAAAGGAGCCATTGTGCAAGGTGGATATGGCCATACTAGTGTGTATGATGAAGTGACCAAGTCCATCTATGTACATGGGGGCTACAAAGCGTTGCCTGGCAATAAGTGTGGGCTGGTGGATGACCTCTATAAGTATAAAGTCAACACCAGAACTTGgtgagtcagcctggtgttaaatcttaaggttgtatttgtggtactagacc #### Atrnl1_ID12438_11 --> 2 - 2 Original Alignment ctTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATgg acttctttccacactttcattttttccctgtctctgtttttccttcccagccTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATgggtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa Alignment from CESAR ctTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATgg acttctttccacactttcattttttccctgtctctgtttttccttcccagccTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATgggtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa Alignment from Spaln_aa2Genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG acttctttccacactttcattttttccctgtctctgtttttccttcccagCCTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATGGgtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa Alignment from Spaln_nt2Genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG acttctttccacactttcattttttccctgtctctgtttttccttcccagCCTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATGGgtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa Alignment from Pairagon CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG acttctttccacactttcattttttccctgtctctgtttttccttcccagCCTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATGGgtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa Alignment from Exonerate_protein2genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG acttctttccacactttcattttttccctgtctctgtttttccttcccagCCTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATGGgtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa Alignment from Exonerate_coding2genome CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG acttctttccacactttcattttttccctgtctctgtttttccttcccagCCTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATGGgtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa Alignment from GeneWise CTTGTGACGAATGGAAGACATTGCCTAAACCAAATCTCCATAGAGATGTCAACCGATTTGGGCATTCTGCAGTCGTCATCAATGG acttctttccacactttcattttttccctgtctctgtttttccttcccagCCTGTGACGACTGGAAGACGTTACCTAAACCAAATCTTCATAGAGATGTCAACAAATTTAGTCATTCCGCAGTTGTCATCAATGGgtatgtttatcacttttgaacagcggttgtgacttcaatttcctaacaaa #### Atrnl1_ID12446_16 --> 0 - 1 Original Alignment AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAg aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAggtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc Alignment from CESAR AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAg aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAggtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc Alignment from Spaln_aa2Genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAGgtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc Alignment from Spaln_nt2Genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAGgtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc Alignment from Pairagon AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAGgtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc Alignment from Exonerate_protein2genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAGgtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc Alignment from Exonerate_coding2genome AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAGgtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc Alignment from GeneWise AAAGTGTCACCGTGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGCCTGCAGTGGCTTCCTGGTGAGCCAAATGACTCTGGATTCTGTGCCTACTTAGAAAGGGCTGCAGTGGCAGGGTTAAAAGCAAACCCTTGCACATCCATGGCAGATGGACTCGTTTGTGAAAAGCCTGTAG aattttgtctgttgaccctgtgagttaactgtaactggatctttttttagAAAGTGTCACCATGGGTAGGCCTACGCAAGATCAACATATCCTACTGGGGATGGGAGGACATGTCTCCTTTCACAAATACAAGTCTGCAGTGGCTTCCTGGCGAGCCCAATGACTCTGGATTCTATGCCTACTTAGAAAGAGCAGCAGTGGCTGGGTTAAAAACAAACCCTTGCACATCCATGGCAGACGGGCTTGTCTGTGAGAAGCCTGTAGgtaagatttcacaccaatatccactgttctgcagccacccctgctgatgc #### Atrnl1_ID12447_17 --> 2 - 1 Original Alignment taAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGc catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagtaAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCAtgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga Alignment from CESAR taAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGc catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagtaAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCAtgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga Alignment from Spaln_aa2Genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagTAAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCATgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga Alignment from Spaln_nt2Genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagTAAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCATgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga Alignment from Pairagon TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagTAAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCATgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga Alignment from Exonerate_protein2genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagTAAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCATgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga Alignment from Exonerate_coding2genome TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagTAAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCATgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga Alignment from GeneWise TAAGCCCAAATCAGAACGCGAGGCCGTGCAAGAAGCCGTGCTCCCTGAGGACCTCCTGCGCCAACTGCACGAGCAGCGGCATGGAGTGCATGTGGTGCAGCAGCACGAAGCGCTGCGTGGACTCCAACGCTTACATCATCTCCTTTCCCTACGGACAGTGCCTGGAGTGGCAGACTGCCACCTGCTCGC catatgtccccaaagtaaccccattgaatgttgtctttcactctttatagTAAGCCCAAATCAGAATGCGAGGCCATGTAAGAAGCCGTATTCCCTAAGGACCTCTTGTGCCAATTGCACAAGTAGCGGCATGGAATGTATGTGGTGCAGTAGCACAAAGCACTGTGTGGACTCCAATGCTTACCTCAGCTCCTTTCCTTATGGACAGTGCCTAGAATGGCAGACTGCAACCTGCTCATgtaagtataaatagggagatcctaacttgtaagtggggttgaatggggga #### Atrnl1_ID12448_18 --> 2 - 1 Original Alignment ctCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAg agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagctCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAggtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa Alignment from CESAR ctCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAg agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagctCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAggtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa Alignment from Spaln_aa2Genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagCTCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa Alignment from Spaln_nt2Genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagCTCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa Alignment from Pairagon CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagCTCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa Alignment from Exonerate_protein2genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagCTCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa Alignment from Exonerate_coding2genome CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagCTCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa Alignment from GeneWise CTCAAAATTGTTCTGGGTTAAGAACCTGTGGACAGTGCTTGGAGCAGCCTGGGTGTGGCTGGTGCAACGATCCTAGTAACACAGGAAGAGGCTATTGCATCGAAGGGTCTTCCCGGGGCCCAATGAAACTCGCGGGGGTCCACAACAGTGACGTGGTTCTTGACACCAGCCTCTGCCCCAAGGAGAAGAACTACGAGTGGTCTTTTATCCAGTGTCCAG agtatatacttctgttgattttaaagcttggaataaaaatttgtgtctagCTCAAAATTGCTCTGGATTAAGAAGCTGTGGACAGTGCTTGGAACAGTCAGGGTGTGGCTGGTGCAATGATTCACGCACCACAGGGAGAGGCTATTGCATTGAAGGGTCCTCTAGGGGCCCAATGAAACTTGCAGGGGTCCACAATAGTGATCTAGTTCTTGACACAAGTCTCTGTCCCAAGGAGAAGAACTATGATTGGTCCTTTATCCAGTGCTCAGgtgagtaaggcagtttacctactgatttgggttcagagagtggatgtaaa #### Atrnl1_ID12518_28 --> 0 - 1 Original Alignment GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAg gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAggtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata Alignment from CESAR GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAg gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAggtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata Alignment from Spaln_aa2Genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata Alignment from Spaln_nt2Genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata Alignment from Pairagon GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata Alignment from Exonerate_protein2genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata Alignment from Exonerate_coding2genome GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata Alignment from GeneWise GGTGCCCCTAAGCCAATAGCCATCGAACCCTGCGCTGGGAACAGAGCTGCTGTCCTGACTGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGCGCCCCACCCCCTGGGCAGTCAG gccaggccaataatgcgcccagaaaacagatatatgccttgccttttcagGGTGCCCCCAAGCCAATAGCCATCGAACCCTGTACTGGGAACAGAGCTGCTGTCCCAACAGTGTTTCTCTGTCTACCGAGAGGATCTTCAGGTGCCCCACCCCCTGGGCAGTCAGgtaataggtgtagcctgacacaagtctgcaaaccttgaaatgtggggata #### Bad_ID1895_3 --> 2 - 0 Original Alignment gcGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAG---GGTTCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcaggtGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt Alignment from CESAR gcGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAGGGT---TCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcaggtGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt Alignment from Spaln_aa2Genome GCGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAG---GGTTCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcagGTGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt Alignment from Spaln_nt2Genome GCGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAGGGT---TCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcagGTGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt Alignment from Pairagon GCGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAG---GGTTCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcagGTGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt Alignment from Exonerate_protein2genome GCGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAG---GGTTCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcagGTGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt Alignment from Exonerate_coding2genome GCGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAG---GGTTCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcagGTGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt Alignment from GeneWise GCGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCGTACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTTCGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGAGGGT---TCCTTCAAG aggactgagttgattggagccaccacccccaacactttgtccattttcagGTGCTGGGGCTATGGAGACCCGCAGTGGTCACAGCTCATACCCAGCAGGCACTGAGGTGGAGGAAGGGATGGAGGAGGAGCTTAGCCCTTTTAGAGGTCGCTCATATTCGGCTCCACCCAATCTGTGGGCAGCACAGCGGTATTGTCATGAGACCAGGAGAATGAGTGATGAGTTTGAGGGCGGCTCTTTCAAAgtaagagccagtgatggtgtgaattgcagcctgaaccctaaactctgctt #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag ggtggccctcttcccgtggttccttgtcggctctctctttttttttttaggGAAAAGGCAGATTTACCCTTGTCTGTTCAGTCACTTaggtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from CESAR gGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCag ggtggccctcttcccgtggttccttgtcggctctctctttttttttttaggGAAAAGGCAGATTTACCCTTGTCTGTTCAGTCACTTaggtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCTTGTCTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCTTGTCTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Pairagon GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAGGTTTC--------------------------------------------- ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCTTGTCTGTTCAGTCACTTAGGTTTCAATTTATTGCAAAGAGGGTGGGTGGGAGTCCCGTAGAGCTAACTA Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagGGAAAAGGCAGATTTACCCTTGTCTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from Exonerate_coding2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAGGGAAAAGGCAGACGTGCCTTTGTCTGTGCAGTCACTCAG ggtGGCCCTCTTCCCGTGGTTCCTTGTCGGCTCTCTCTTTTTTTTTTTAGGGAAAAGGCAGATTTACCCTTGTCTGTTCAGTCACTTAGgtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta Alignment from GeneWise ggtggccctcttcccgtggttccttgtcggctctctctttttttttttagggaaaaggcagatttacccttgtctgttcagtcacttaggtttcaatttattgcaaagagggtgggtgggagtcccgtagagctaacta #### Bbs1_ID731_3 --> 2 - 0 Original Alignment caCTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacagcaCTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg Alignment from CESAR caCTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacagcaCTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg Alignment from Spaln_aa2Genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg Alignment from Spaln_nt2Genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg Alignment from Pairagon CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg Alignment from Exonerate_protein2genome CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg Alignment from Exonerate_coding2genome TCACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacaGCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg Alignment from GeneWise CACTGGCAGATTTGCATGGCGATGGGGAGTACAAG cttgcagcatcaggatacaatgagaatgttttcttgtctttgcaatacagCACTGGCAGATTTGCATGGTGATGGGGAGTATAGGgtaaggcatcaccaatcaggcaccaatcagggatttgggggaactacagg #### Best1_ID2632_7 --> 0 - 0 Original Alignment GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc Alignment from CESAR GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc Alignment from Spaln_aa2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc Alignment from Spaln_nt2Genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc Alignment from Pairagon GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc Alignment from Exonerate_protein2genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc Alignment from Exonerate_coding2genome GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc Alignment from GeneWise GTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATGATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAG gggcatccagaagggggggtcgagttagttctctctgtatatcctgtcagGTGGCAGAACAGCTCATCAACCCTTTTGGAGAAGATGATGATGACTTTGAAACAAACTGGATTATTGACAGAAACTTGCAAgtatggaagggaacagggtacatatgtggagactgtatcttgtataactc #### Best1_ID2635_4 --> 2 - 0 Original Alignment gtTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccaggtTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATgtgagaccacacatagtatgtagtgggacgcgttctagtttcctttgggg Alignment from CESAR gtTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccaggtTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATgtgagaccacacatagtatgtagtgggacgcgttctagtttcctttgggg Alignment from Spaln_aa2Genome GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccagGTTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATgtgagaccacacatagtatgtagtgggacgcgttctagtttcctttgggg Alignment from Spaln_nt2Genome GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAATGAG------------ atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccagGTTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATGTGAGACCACACATAgtatgtagtgggacgcgttctagtttcctttgggg Alignment from Pairagon GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccagGTTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATgtgagaccacacatagtatgtagtgggacgcgttctagtttcctttgggg Alignment from Exonerate_protein2genome GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccagGTTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATgtgagaccacacatagtatgtagtgggacgcgttctagtttcctttgggg Alignment from Exonerate_coding2genome GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccagGTTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATgtgagaccacacatagtatgtagtgggacgcgttctagtttcctttgggg Alignment from GeneWise GTTTTATGACCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTGATGAAT atatgctggagcccaagtcctactgtggggtttcttcccttgcaacccagGTTTCAGGACGCATGGAGAACATAAGCAATTGCAAAAGTTGGGTTTACCACACAACACATTTTGGGTCCCCTGGGTATGGTTTGCTAACTTGTCTATGAAAGCCTACCTTGGAGGTCGAGTCCGTGATACCATTCTGCTCCAGAGCCTGATGAATgtgagaccacacatagtatgtagtgggacgcgttctagtttcctttgggg #### Blnk_ID8056_15 --> 0 - 0 Original Alignment GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata Alignment from CESAR GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata Alignment from Spaln_aa2Genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata Alignment from Spaln_nt2Genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata Alignment from Pairagon GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata Alignment from Exonerate_protein2genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata Alignment from Exonerate_coding2genome GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata Alignment from GeneWise GAGGCTGAACTGCTCGGTAAGCCCTGGTATGCTGGCGCCTGTGACCGCAAGTCTGCTGAAGAGGCCTTGCACAGATCCAACAAG attatattacctccccaaagatagttccagcgtcgcttccttctttgcagGAGGCAAAACTTCTAAGAAAGTCTTGGTATGCTGGGGCTTGTGACCATAAGTCTGCTGAAGAGGCCTTACACCGGTCAAACAAGgtaagtagtattctactgatacaactagcagttgtataagttagactata #### Blnk_ID8057_14 --> 2 - 0 Original Alignment ggTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaaataactgaaaccgattgctatctttttacagggTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca Alignment from CESAR ggTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaaataactgaaaccgattgctatctttttacagggTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca Alignment from Spaln_aa2Genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaaataactgaaaccgattgctatctttttacagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca Alignment from Spaln_nt2Genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaaataactgaaaccgattgctatctttttacagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca Alignment from Pairagon GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaaataactgaaaccgattgctatctttttacagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca Alignment from Exonerate_protein2genome GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaaataactgaaaccgattgctatctttttacagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca Alignment from Exonerate_coding2genome ACCTGTCCATCAAAAGCCTGTACCCTTGCCAAGGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaAATAACTGAAACCGATTGCTATCTTTTTACAGGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca Alignment from GeneWise GGTTCCCAGAAGCGGGGAGCCCAGCTGCAGATGGACCGTTCCACAGCTTCCCATTTAATTCGACGTTTGCAGACCAG ttcattaattgcccataaaataactgaaaccgattgctatctttttacagGGTTCCCAGAAGCTGGAAGCCCTGCTGCAGCTGGACCTTTCCACAGCTTCCCATTTAATTCAACATTTGCAGATCAGgtgagtcataagcttggcctcagtgaatcagttctggtttatctctggca #### Blnk_ID8068_3 --> 1 - 1 Original Alignment gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacaggCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAggtaatcctcttctttctaacattacattattgggctcaggtgtaggccga Alignment from CESAR gCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAg tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacaggCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAggtaatcctcttctttctaacattacattattgggctcaggtgtaggccga Alignment from Spaln_aa2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAGgtaatcctcttctttctaacattacattattgggctcaggtgtaggccga Alignment from Spaln_nt2Genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAGgtaatcctcttctttctaacattacattattgggctcaggtgtaggccga Alignment from Pairagon GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAGgtaatcctcttctttctaacattacattattgggctcaggtgtaggccga Alignment from Exonerate_protein2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAGgtaatcctcttctttctaacattacattattgggctcaggtgtaggccga Alignment from Exonerate_coding2genome GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAGgtaatcctcttctttctaacattacattattgggctcaggtgtaggccga Alignment from GeneWise GCTAAAAGTCAAAGGCCCTCCAAGTGTTCCTCGAAGGGACTACGCATTAG tcatcatacagtaaaccttatgttgtgttaaacactgtactcttttacagGCTAAAAGTCAAAGGCCCTCCAAGTGTGCCACGAAGTGACTATGCATTAGgtaatcctcttctttctaacattacattattgggctcaggtgtaggccga #### Bloc1s2_ID8947_4 --> 2 - 1 Original Alignment atGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGg ctttaaccttactaactgcctttatctcccttctgccttccttctttcagatGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGggtaagcactttgatttctgttttaatcagacacactttggtttataagaa Alignment from CESAR atGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGg ctttaaccttactaactgcctttatctcccttctgccttccttctttcagatGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGggtaagcactttgatttctgttttaatcagacacactttggtttataagaa Alignment from Spaln_aa2Genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ctttaaccttactaactgcctttatctcccttctgccttccttctttcagATGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGGgtaagcactttgatttctgttttaatcagacacactttggtttataagaa Alignment from Spaln_nt2Genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ctttaaccttactaactgcctttatctcccttctgccttccttctttcagATGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGGgtaagcactttgatttctgttttaatcagacacactttggtttataagaa Alignment from Pairagon ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ctttaaccttactaactgcctttatctcccttctgccttccttctttcagATGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGGgtaagcactttgatttctgttttaatcagacacactttggtttataagaa Alignment from Exonerate_protein2genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGG ctttaaccttactaactgcctttatctcccttctgccttccttctttcagATGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGGgtaagcactttgatttctgttttaatcagacacactttggtttataagaa Alignment from Exonerate_coding2genome ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTG ctttaaccttactaactgcctttatctcccttctgccttccttctttcagATGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGggtaagcactttgatttctgttttaatcagacacactttggtttataagaa Alignment from GeneWise ATGCTGAACTACAGCCATATCTGGACCAGATCAACATGATTGAGGAGCAGGTGGCAGCTCTGGAGCAGGCAGCCTACAAGCTCGATGCTTATTCAAAAAAACTGGAAGCCAAGTACAAGAAGTTGGAGAAGCGA ctttaaccttactaactgcctttatctcccttctgccttccttctttcagATGCTGAACTACAGCCACATTTAGAACAAATCAATATGATTGAGGAGCAGGTGGCAGCCCTGGAGCAAACAGCCTATGAACTTGATGCTTATTCCGAAAAATTGGGTAAGCACTTTGATTTCTGTTTTAATCAGacacactttggtttataagaa #### Bloc1s2_ID8949_2 --> 2 - 1 Original Alignment atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacagacGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAggtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt Alignment from CESAR atGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAg aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacagacGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAggtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt Alignment from Spaln_aa2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacagACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt Alignment from Spaln_nt2Genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacagACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt Alignment from Pairagon AGATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacAGACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt Alignment from Exonerate_protein2genome ATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacagACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt Alignment from Exonerate_coding2genome GATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacaGACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt Alignment from GeneWise GATGATGCTGCGGTGGAGACAGCCGAGGAAGCAAAGGAGCCTGCCGAAGCTGACATCAATGAGCTCTGCCGGGACATGTTCTCCAAAATGGCCACATATTTGACTGGGGAACTGACAG aggtgaggcctgggaggtctgctcctcattactcttatttctgcaaacaGACGATGCTGCAGTGGAGACAGCTGAGGAAGCAAAAGAGCCTGCTGAAGCTGACATCAATGAGCTCTGTCAGGACATGTTCTCCAAAATGTCCACATATTTGACTGGGGAGCTCACAGgtaagttgagatacctttgtgctgagtcaattatgtctggcaaccatagt #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacaggtCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAggttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from CESAR gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacaggtCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAggttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Pairagon GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Exonerate_protein2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Exonerate_coding2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from GeneWise GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag #### Btaf1_ID7221_4 --> 2 - 1 Original Alignment aaCCTACAGAGAGT---------TCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagaaTCTGCTGAAAGTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAggtgagggggttgggagctatgggatttggatttcaaattagagcatatct Alignment from CESAR aaCCT---------ACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAg tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagaaTCTGCTGAAAGTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAggtgagggggttgggagctatgggatttggatttcaaattagagcatatct Alignment from Spaln_aa2Genome TACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagaatctgctgaaagTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtgagggggttgggagctatgggatttggatttcaaattagagcatatct Alignment from Spaln_nt2Genome AACCTACAGAGAGTTCT---------ATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagAATCTGCTGAAAGTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtgagggggttgggagctatgggatttggatttcaaattagagcatatct Alignment from Pairagon AACCTA---------CAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagAATCTGCTGAAAGTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtgagggggttgggagctatgggatttggatttcaaattagagcatatct Alignment from Exonerate_protein2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagaatctgctgAAAGTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtgagggggttgggagctatgggatttggatttcaaattagagcatatct Alignment from Exonerate_coding2genome AACCTACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagaatctgctgAAAGTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtgagggggttgggagctatgggatttggatttcaaattagagcatatct Alignment from GeneWise TACAGAGAGTTCTATGGAAGATTCATCTACTACAGATCGATTAAATTTTGACAGATTTGATATATGCAGATTGTTACAGCATGGGGCATCACTTTTGGGGTCTGCTGGTGCAGAATTTGAAGTCCAAGATGAAAAATCAG tgagctgggaccgacatgcaacaagattccttcccctccctgtcctccagaatctgctgaaagTTCTGAAAGTTCTATGGAAGATTCATCTAACGCAGATCAATTGAACTTCGATAGATTTGATATATGCAGGTTGTTGCAACCTGCAGCATCACTTTTGGGATCTGCTGGCGCAGAGTTTGAAGTTCAAGATCAGAAACCAGgtgagggggttgggagctatgggatttggatttcaaattagagcatatct #### Btaf1_ID7222_5 --> 2 - 0 Original Alignment gtGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacaggtGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat Alignment from CESAR gtGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacaggtGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat Alignment from Spaln_aa2Genome GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacagGTGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat Alignment from Spaln_nt2Genome GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacagGTGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat Alignment from Pairagon GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacagGTGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat Alignment from Exonerate_protein2genome GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacagGTGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat Alignment from Exonerate_coding2genome GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacagGTGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat Alignment from GeneWise GTGAAGTGGATCCTAAAGAGAGGATAGCACGCCAACGGAAATTATTACAGAAGAAACTTGGACTTAATATGGGA---GAAGCAATTGGAATGAGTACTGAAGAACTCTTCAACGATGAAGATTTGGATTATACCCCAACTTCAGCAGCCCTTGTAAACAAACAATCT tatccaccgtgctcattaatcatctaggtgatctccaactctgcatacagGTGAAGTGGGTCCTAAAAAACGAATAGCACGACACCAGCGATTATTACAGAAGGAGCTTGGACTTAATATGGGACACGAAGCTATAGGCATGAGTAGTGAAGAGCTCTTCAATGATGAAGATTTGGATTATACACCAACTCCAACAGCGCTTGTGAACAAACAGTCTgtgcgtaaagaagaataatgccaccaacttcttctgcttggcattattat #### Btaf1_ID7247_26 --> 0 - 0 Original Alignment GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca Alignment from CESAR GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca Alignment from Spaln_aa2Genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca Alignment from Spaln_nt2Genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca Alignment from Pairagon GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca Alignment from Exonerate_protein2genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca Alignment from Exonerate_coding2genome GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca Alignment from GeneWise GCAGGCATTCCAGACCCTCCAAACATGTCAGAAGAATTAATCCAGTTGAAAGCAAAAGAGCGACACTTTTTAGAGCAATTGTTAGATGGGAAGAAGTTAGAAAATTACAAGATCCCAGTGCCAATCAATGCTGAACTCAGGAAATATCAGCAG tagcagacacccagtaactactactattcatgcatgctttctgttgaaagGCAGGCATTCCAGACCCTCCAAACATGTCTGAGGAATTGATTCAGTTAAAAGCAAAAGAGCAACACTTCTTGGAGCAATTGTTAGATGGGAAGAAAATAGAAAATTACAAGATCCCAGTGCCAATCAACGCCAAACTCAGGAAACATCAGCAAgtgggtgatatcagttgcagctccacattttctttaggctggataaacca #### Btaf1_ID7251_30 --> 1 - 0 Original Alignment aAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagaAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta Alignment from CESAR aAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagaAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta Alignment from Spaln_aa2Genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta Alignment from Spaln_nt2Genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta Alignment from Pairagon AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta Alignment from Exonerate_protein2genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta Alignment from Exonerate_coding2genome AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta Alignment from GeneWise AAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACCAAGTTGTCCAAAGCAGTAAAGCAGCTGACTGCTAATTACAGGATTATTCTTTCTGGAACACCAATCCAG taacctatgatacataagaaaagctcatagtgcgtgccccttccacacagAAATATTAAATTTAACTACTGTATTCTTGATGAAGGCCATGTCATAAAAAATGGAAAAACAAAGTTGGCCAAAGCAGTAAAACAACTGACTGCTAATTACAGGCTCATTCTTTCTGGGACACCAATCCAAgtgagtgtgtaaggtcaaaacagttatgaccttgctaggaaacagaggta #### Btrc_ID9425_4 --> 0 - 0 Original Alignment ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt Alignment from CESAR ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt Alignment from Spaln_aa2Genome ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt Alignment from Spaln_nt2Genome ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt Alignment from Pairagon ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt Alignment from Exonerate_protein2genome ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt Alignment from Exonerate_coding2genome ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt Alignment from GeneWise ACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTAACAAGCACTGCTATGAAGACTGAAAATTGTGTGGCCAAA aaagtaaaaagaaaactgttttgttcctgtggcctctcttctttttttagACTTACAACAGCTGTGCCAGGCTTTGCATAAACCAAGAGACAGTATGTCTGACATGCACTGCTATGAAGACTGAAAATTGTGTCACCAAGgtgaggattccttgtttaggagtaatagagcaccctgtgtatggcagctt #### Btrc_ID9461_10 --> 1 - 0 Original Alignment aGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagaGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGCAGTT------GTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat Alignment from CESAR aGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagaGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGCA------GTTGTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat Alignment from Spaln_aa2Genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGCA------GTTGTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat Alignment from Spaln_nt2Genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGC------AGTTGTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat Alignment from Pairagon AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGCA------GTTGTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat Alignment from Exonerate_protein2genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGCA------GTTGTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat Alignment from Exonerate_coding2genome AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGCA------GTTGTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat Alignment from GeneWise AGTGTGGGATGTAAATGCAGGTGAGATGCTAAACACATTGATTCACCACTGTGAAGCCGTTCTGCACCTGCGCTTCAATAATGGCATGATGGTGACCTGTTCCAAAGACCGTTCCATCGCTGTGTGGGATATGGCTTCCCCAACTGACATCACCCTCAGGAGGGTGCTGGTGGGACACCGAGCTGCGGTCAATGTTGTAGACTTTGATGACAAGTACATCGTTTCTGCCTCTGGAGATAGAACCATAAAG gacatttcaccataagagattagtccaagaggtgttctactatgttgcagAGTATGGGATATAAATGCAGGAGTGATGTTAAATACATTGATACACCACTGTGAAGCTATTCTTCATTTGAGATTCAATAATGGTATGATGGTAACATGTTCTAAAGACTGCTCAAAAGCTGTATGGGATATGGCTTCCCCAACTGATATATCCCTCAGGAAGGTCCTGGTTGGACATCGAGCTGCA------GTTGTAGACTTTGATGACAAGTATATAGTCTCTGCCTCTGGAGATAGGACTATAAAGgtaggagctctgattcttatataagtcgctatttaagctgtaatatgaat #### Btrc_ID9463_12 --> 1 - 2 Original Alignment gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATgggtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac Alignment from CESAR gCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATgg cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcaggCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATgggtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac Alignment from Spaln_aa2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATGGgtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac Alignment from Spaln_nt2Genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATGGgtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac Alignment from Pairagon GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATGGgtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac Alignment from Exonerate_protein2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATGGgtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac Alignment from Exonerate_coding2genome GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATGGgtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac Alignment from GeneWise GCTGTGGGACATAGAGTGTGGAGCATGCCTGCGAGTGTTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGATTTGATAACAAAAGGATAGTGAGCGGAGCCTATGATGG cctacttgttgtgaatgctgcaacttatctcctctctctggcccgtgcagGCTCTGGGACATAGAGTGTGGAGCATGCCTGCAGGTATTGGAGGGCCATGAGGAGTTGGTACGCTGCATTCGGTTTGATAACAAAAGGATCGTGAGCAGAACGTATGATGGgtgagttcgctggtaatgtttttaaatcagaaaaagagttatgcaggcac #### C030046E11Rik_ID6292_6 --> 2 - 0 Original Alignment ttGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagttGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCCA---ACAAGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc Alignment from CESAR ttGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagttGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCCA---ACAAGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc Alignment from Spaln_aa2Genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagTTGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCCA---ACAAGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc Alignment from Spaln_nt2Genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagTTGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCC---AACAAGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc Alignment from Pairagon TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagTTGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCCAACA---AGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc Alignment from Exonerate_protein2genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagTTGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCCA---ACAAGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc Alignment from Exonerate_coding2genome TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagTTGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCCA---ACAAGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc Alignment from GeneWise TTGGTTCATTCCTCGGCTTTGCAGATGTGCACATTAAAGATATGGAATACTGTGCCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGTAAAGTTGGATTTATTACACCAGTATCCAGTAGATTTACGGCAGAG ttttctagcctctagtgaattgtcttcaatgttgactttcttatttctagTTGGTTCATTCCTTAGTCTTTCTGATGTACACATTAAGGATATGGAATATTGCACCACACTTGATGGATTTGCTGTTGTGTTTAATGATGGGAAAGTTGCATTTATAAGTCCA---ACAAGCCGATTTACAGCTGAAgtgagtattgcccaacgagttgatcctcttgaatttggctcaacaccagc #### C030046E11Rik_ID6294_8 --> 1 - 1 Original Alignment tGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTg ttgataatgcccttcctgttggatctattccccgcccctcatccccacagtGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTggtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag Alignment from CESAR tGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTg ttgataatgcccttcctgttggatctattccccgcccctcatccccacagtGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTggtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag Alignment from Spaln_aa2Genome TGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTG ttgataatgcccttcctgttggatctattccccgcccctcatccccacagTGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTGgtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag Alignment from Spaln_nt2Genome TGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTG ttgataatgcccttcctgttggatctattccccgcccctcatccccacagTGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTGgtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag Alignment from Pairagon TGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTG ttgataatgcccttcctgttggatctattccccgcccctcatccccacagTGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTGgtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag Alignment from Exonerate_protein2genome TGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTG ttgataatgcccttcctgttggatctattccccgcccctcatccccacagTGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTGgtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag Alignment from Exonerate_coding2genome TGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTG ttgataatgcccttcctgttggatctattccccgcccctcatccccacagTGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTGgtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag Alignment from GeneWise TGGCTGTGTGCAGGTTTATACAATCGACAACACTACAGGAGCCATGCTGCTGTCCCATAAACTAGAGCTCACAGCAAAGCAGTATCCTG ttgataatgcccttcctgttggatctattccccgcccctcatccccacagTGGCTGTGTGCAGGTTTATACTATTGACAATACTACAGGAGCCATGGTATCATCACATAAACTTGAGCTCACAGCAAAACAATATCCTGgtaacattgtaggaaaaaacattcctagatacctatatttaaaacagcag #### C030046E11Rik_ID6297_11 --> 0 - 0 Original Alignment AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt Alignment from CESAR AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt Alignment from Spaln_aa2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt Alignment from Spaln_nt2Genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt Alignment from Pairagon AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt Alignment from Exonerate_protein2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt Alignment from Exonerate_coding2genome AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt Alignment from GeneWise AGCTGGGGTGCAGAAGGCTATCACTTATGGGTAATCAGTGGGCTGGGCTCTCAGCACACTCAGATTGAGACCGACCTCAGGAGCACAGTTAAAGAGCCCAGCATTCTGCTGTTTCAGTTTATCAAGAGTGTACTCACTGTGAACCCTTGTATG ccaggagcttctttatgcatttactcttctttgcattgtacctttatcagAGCTGGGGCGCAGAAGGCTACCACATATGGGTAATCAGTGGGTTGGGCTCTCAGCACACAGAGATTGAGACTGACCTCAGGAGTACAGTCAAGGAACCCAGCATTCTCCTATTTCAATTTATCAAGAGTGTACTTACTGTGAATCCTTGTATGgtaagactaagtacagcttttttataatttattagtggtgttgtgtactt #### C030046E11Rik_ID6302_16 --> 0 - 2 Original Alignment CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgg atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATgggtaacacataatggtgttctagcttaattgatcatctatctcaccttcct Alignment from CESAR CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATgg atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATgggtaacacataatggtgttctagcttaattgatcatctatctcaccttcct Alignment from Spaln_aa2Genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATGGgtaacacataatggtgttctagcttaattgatcatctatctcaccttcct Alignment from Spaln_nt2Genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATGGgtaacacataatggtgttctagcttaattgatcatctatctcaccttcct Alignment from Pairagon CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATGGgtaacacataatggtgttctagcttaattgatcatctatctcaccttcct Alignment from Exonerate_protein2genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATGGgtaacacataatggtgttctagcttaattgatcatctatctcaccttcct Alignment from Exonerate_coding2genome CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATGGgtaacacataatggtgttctagcttaattgatcatctatctcaccttcct Alignment from GeneWise CTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCTCATGTCACCAAAGCACCAATGGAAACATTACTGCTTAGTGTCTTCCGCGACATGGTGGTAGTGTTTCGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCCGATGG atgcctaattctgattgctcttgctacacagctctccttggtccccacagCTCAGAATCTACCTACGAACATCCAACCTGGACAATGCCTTTGCGCATGTTACCAAAGCAACAATGGAAACGTTACTGCTGAGTGTCTTCCGTGACATGGTTGTAGTCTTTAGAGCAGACTGTCCAATATGCCTTTACAGTATTGAAAGAAAATCTGATGGgtaacacataatggtgttctagcttaattgatcatctatctcaccttcct #### C030046E11Rik_ID6303_17 --> 1 - 0 Original Alignment tTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagtTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa Alignment from CESAR tTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagtTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa Alignment from Spaln_aa2Genome TTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagTTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa Alignment from Spaln_nt2Genome TTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagTTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa Alignment from Pairagon TTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagTTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa Alignment from Exonerate_protein2genome TTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagTTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa Alignment from Exonerate_coding2genome TTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagTTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa Alignment from GeneWise TTCCAATACTACAGCTAGTGTCCAGGTTCTTCAGGAGGTCTCCATGTCACGGTACATTCCTCACCCCTTCCTGGTAGTGTCTGTCACGCTGACGTCAGTGAGTACAGAGAATGGCATCAGCTTGAAAATGCCGCAGCAG cttgcattacaattgttagcacacttctttccgtttgtctgtcctttcagTTCCAACACGACAGCTAGTGTTCAGGTGCTCCAGGAGGTCTCCATGTCTCAGTACATTCCGCACCCGTTCCTGGTAGTGTCCATTATGCTGACTTCTGTAAGCACAGAGAATGGCATCAGCTTGAAAATGCCACAGCAAgtatcatatatttttggaattccttagggtggtcctgttctttactgcaa #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta #### Cacul1_ID13274_8 --> 1 - 1 Original Alignment aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcaggCGA---CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCTTATagtattcgacaatattttgataagtttgtaaaatgactcagcctctggaga Alignment from CESAR aGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATa gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcaggCGA---CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCTTATagtattcgacaatattttgataagtttgtaaaatgactcagcctctggaga Alignment from Spaln_aa2Genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcagGCGA---CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCTTATAgtattcgacaatattttgataagtttgtaaaatgactcagcctctggaga Alignment from Spaln_nt2Genome GTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcagGCGA-CACTCCCGAAGGAGAGCTGGAGATGAGTTAGCTTATAgtattcgacaatattttgataagtttgtaaaatgactcagcctctggaga Alignment from Pairagon AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcaggcgacactcccgaag------------------GAGAGCTGGAGATGAGTTAGCTTATAgtattcgacaatattttgataagtttgtaaaatgactcagcctctggaga Alignment from Exonerate_protein2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATA gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcagG---CGACACTCCCGAAGGAGAGCTGGAGATGAGTTAGCTTATAgtattcgacaatattttgataagtttgtaaaatgactcagcctctggaga Alignment from Exonerate_coding2genome AGGTGATCAGTCCCGGAAGAGAGCTGGAGATGAGTTGGCTTATAAC gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcagG---CGACACTCCCGAAGGAGAGCTGGAGATGAGTTAGCTTATAGTattcgacaatattttgataagtttgtaaaatgactcagcctctggaga Alignment from GeneWise gccagtgaaaacaccagtttttggccaacccaactcctgtctcctctcaggcgacactcccgaaggagagctggagatgagttagcttatagtattcgacaatattttgataagtttgtaaaatgactcagcctctggaga #### Cacul1_ID13278_4 --> 0 - 0 Original Alignment GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg Alignment from CESAR GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg Alignment from Spaln_aa2Genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg Alignment from Spaln_nt2Genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg Alignment from Pairagon GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg Alignment from Exonerate_protein2genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg Alignment from Exonerate_coding2genome GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg Alignment from GeneWise GCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCTCTGGGACAGTATATGGGAGCATTGCAGAGCATCGTGCCTCTTTTCATATATATG atatatctttgctggtaaattgaagggtatctcctgcttctgtttctaagGCCAGCCCTCCAGACCTCTATATTGAAAGATTTAATATAGCCCTGGGACAGTATATGGGAGCATTGCAAAGCATCGTTCCTCTTTTCATATATATGgtcagctttaagctctgtagtcctttcttttctttttaaggggtgtaggg #### Cacul1_ID13281_2 --> 2 - 2 Original Alignment taATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACag tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagtaATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACaggtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa Alignment from CESAR taATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACag tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagtaATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACaggtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa Alignment from Spaln_aa2Genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa Alignment from Spaln_nt2Genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa Alignment from Pairagon TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa Alignment from Exonerate_protein2genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa Alignment from Exonerate_coding2genome TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa Alignment from GeneWise TAATGAATGTTATAACAATTGAAGATTATAAGAGCACATACTGGCCAAAATTAGATGGTGCCATAGATCAACTTTTAACCCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAG tctgtataccatgtagaggatagtggtcctgcgtaacggataatggatagTAATAAATGTTATAACAATTGAGGATTATAAGAGCACATACTGGCCTAAATTAGATGGTGCCATAGATCAACTTTTAACTCAGAGTCCTGGTGACTATATACCTATATCCTATGAACAGATTTACAGgtgagctgccattcaacaataagttcaccccccaatacagtaaaacagaa #### Capn1_ID1372_4 --> 0 - 2 Original Alignment CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTaa ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAaagtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg Alignment from CESAR CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTaa ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAaagtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg Alignment from Spaln_aa2Genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAAAgtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg Alignment from Spaln_nt2Genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAAAgtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg Alignment from Pairagon CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAAAgtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg Alignment from Exonerate_protein2genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAAAgtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg Alignment from Exonerate_coding2genome CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAAAgtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg Alignment from GeneWise CTGTGGCAGTTCGGGGAGTGGGTCGACGTGGTCATAGATGACTTGCTGCCCACCAAGGACGGGAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAATTCTGGAGCGCACTGCTGGAGAAAGCCTATGCTAA ataccttgtgccagtctggctggagaaatacccactttctatcttctcagCTGTGGGAGTTCGGTGAGTGGGTTGATGTGGTCATAGATACACTACTGCCCACAAAAGATGGGAAACTTATTTTTGTACACTCAGCCCAAGGCAATGACTTTTGGAGTTCATTGCTGGAGAAGGCCTACACAAAgtgagtacagaggaccttttccctctccagaggcagagctgtaaatggtg #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtgagttcagatggataacggggctctgtgatacctctgttttgggctgt Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTggtgagttcagatggataacggggctctgtgatacctctgttttgggctgt Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtgagttcagatggataacggggctctgtgatacctctgttttgggctgt Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTGG---CCAAGTGCACACTGACTTCCTTGgtgagttcagatggataacggggctctgtgatacctctgttttgggctgt Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTG---GCCAAGTGCACACTGACTTCCTTGgtgagttcagatggataacggggctctgtgatacctctgttttgggctgt Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtgagttcagatggataacggggctctgtgatacctctgttttgggctgt Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtgagttcagatggataacggggctctgtgatacctctgttttgggctgt Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttagacagcttcttaccagccaggaccctcctggtttgtgtgctggcagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACAACACTACACTGTTCCAAGAACACTGAGGGTGGCGCTG---CAGTGTGGCCTGGAAGACGGTGCACAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTAGAGGCTGGGTTGCATGTGGAGCAGCATGGTGGC---CAAGTGCACACTGACTTCCTTGgtgagttcagatggataacggggctctgtgatacctctgttttgggctgt #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAggtaagttgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAggtgggttgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtaagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtaagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Pairagon CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtaagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtaagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtaagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGCCTGCCCTTGCCAGgtaagttgtaatccctccacccctccttgtgcagGAGGTCCTCCACCTGGACCTGAGCTGGCTGTGCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGACCCCTCCTCAGCAAGgtaagtggtggatgccatcctgtccaacccccattcaggctagcctggtg #### Casp7_ID12087_2 --> 1 - 1 Original Alignment gAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAg ggattgttctttgaccatcgccaaaaatcgggtcttcctggctgctccaggAAGAAGAAGAGAAGTGCCTGTGCGGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACCTATCTGTATCACATGGATTTCCAGAAGATGGGTAAATGTATCATAATAAATAATAAGAATTTTGACAAAGCAACTggtatgtaaacagcgccaaggccagttcctactaacccttcaacatcctgt Alignment from CESAR gAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAg ggattgttctttgaccatcgccaaaaatcgggtcttcctggctgctccaggAAGAAGAAGAGAAGTGCCTGTGCGGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACCTATCTGTATCACATGGATTTCCAGAAGATGGGTAAATGTATCATAATAAATAATAAGAATTTTGACAAAGCAACTggtatgtaaacagcgccaaggccagttcctactaacccttcaacatcctgt Alignment from Spaln_aa2Genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggattgttctttgaccatcgccaaaaatcgggtcttcctggctgctccagGAAGAAGAAGAGAAGTGCCTGTGCGGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACCTATCTGTATCACATGGATTTCCAGAAGATGGGTAAATGTATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtatgtaaacagcgccaaggccagttcctactaacccttcaacatcctgt Alignment from Spaln_nt2Genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggattgttctttgaccatcgccaaaaatcgggtcttcctggctgctccagGAAGAAGAAGAGAAGTGCCTGTGCGGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACCTATCTGTATCACATGGATTTCCAGAAGATGGGTAAATGTATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtatgtaaacagcgccaaggccagttcctactaacccttcaacatcctgt Alignment from Pairagon GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggattgttctttgaccatcgccaaaaatcgggtcttcctggctgctccagGAAGAAGAAGAGAAGTGCCTGTGCGGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACCTATCTGTATCACATGGATTTCCAGAAGATGGGTAAATGTATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtatgtaaacagcgccaaggccagttcctactaacccttcaacatcctgt Alignment from Exonerate_protein2genome GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggattgttctttgaccatcgccaaaaatcgggtcttcctggctgctccagGAAGAAGAAGAGAAGTGCCTGTGCGGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACCTATCTGTATCACATGGATTTCCAGAAGATGGGTAAATGTATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtatgtaaacagcgccaaggccagttcctactaacccttcaacatcctgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAAGAAGAAGAGAAATGCCTCTGCGGGCCCCGTCAGGACCGGCCGGGACCGAGTGCCCACTTATCTGTACCGCATGGATTTCCAGAAGATGGGTAAATGCATCATCATAAACAACAAGAACTTCGACAAAGCGACAG ggattgttctttgaccatcgccaaaaatcgggtcttcctggctgctccagGAAGAAGAAGAGAAGTGCCTGTGCGGGTCCTGTCAGAACCAGCTGGGAACGTGTACCCACCTATCTGTATCACATGGATTTCCAGAAGATGGGTAAATGTATCATAATAAATAATAAGAATTTTGACAAAGCAACTGgtatgtaaacagcgccaaggccagttcctactaacccttcaacatcctgt #### Casp7_ID12090_5 --> 0 - 1 Original Alignment GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAg caagtatgctttgtcctactctgttctatgggattacttttcaattatagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGACTCAGGACCCATTAATGACATTGACACTAATCCCCGAAACAAGATCTCAGTAGAAGCTGACTGTCTTTTTGCTTATTCCACGGTCCCAggtgagtcatcaactcttggcaaaaaacatactgcttcatggtggtcaggt Alignment from CESAR GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAg caagtatgctttgtcctactctgttctatgggattacttttcaattatagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGACTCAGGACCCATTAATGACATTGACACTAATCCCCGAAACAAGATCTCAGTAGAAGCTGACTGTCTTTTTGCTTATTCCACGGTCCCAggtgagtcatcaactcttggcaaaaaacatactgcttcatggtggtcaggt Alignment from Spaln_aa2Genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttgtcctactctgttctatgggattacttttcaattatagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGACTCAGGACCCATTAATGACATTGACACTAATCCCCGAAACAAGATCTCAGTAGAAGCTGACTGTCTTTTTGCTTATTCCACGGTCCCAGgtgagtcatcaactcttggcaaaaaacatactgcttcatggtggtcaggt Alignment from Spaln_nt2Genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttgtcctactctgttctatgggattacttttcaattatagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGACTCAGGACCCATTAATGACATTGACACTAATCCCCGAAACAAGATCTCAGTAGAAGCTGACTGTCTTTTTGCTTATTCCACGGTCCCAGgtgagtcatcaactcttggcaaaaaacatactgcttcatggtggtcaggt Alignment from Pairagon GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttgtcctactctgttctatgggattacttttcaattatagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGACTCAGGACCCATTAATGACATTGACACTAATCCCCGAAACAAGATCTCAGTAGAAGCTGACTGTCTTTTTGCTTATTCCACGGTCCCAGgtgagtcatcaactcttggcaaaaaacatactgcttcatggtggtcaggt Alignment from Exonerate_protein2genome GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttgtcctactctgttctatgggattacttttcaattatagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGACTCAGGACCCATTAATGACATTGACACTAATCCCCGAAACAAGATCTCAGTAGAAGCTGACTGTCTTTTTGCTTATTCCACGGTCCCAGgtgagtcatcaactcttggcaaaaaacatactgcttcatggtggtcaggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCATGCCGAGGGACGGAGCTCGATGATGGAATCCAGGCTGACTCGGGGCCCATCAACGACATTGACGCTAATCCCCGCAACAAGATCCCGGTGGAAGCCGACTTCCTCTTTGCTTACTCCACGGTTCCAG caagtatgctttgtcctactctgttctatgggattacttttcaattatagGCATGTCGAGGGACAGAGCTTGATGATGGTATAGAGGCTGACTCAGGACCCATTAATGACATTGACACTAATCCCCGAAACAAGATCTCAGTAGAAGCTGACTGTCTTTTTGCTTATTCCACGGTCCCAGgtgagtcatcaactcttggcaaaaaacatactgcttcatggtggtcaggt #### Catsper1_ID925_2 --> 2 - 1 Original Alignment agGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTg ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagagGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAAATA---TTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAggtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct Alignment from CESAR agGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTg ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagagGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAA---ATATTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAggtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct Alignment from Spaln_aa2Genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagAGGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAA---ATATTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAGgtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct Alignment from Spaln_nt2Genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagAGGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAA---ATATTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAGgtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct Alignment from Pairagon AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagAGGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAA---ATATTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAGgtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct Alignment from Exonerate_protein2genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagAGGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAA---ATATTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAGgtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct Alignment from Exonerate_coding2genome AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagAGGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAA---ATATTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAGgtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct Alignment from GeneWise AGGCCCAGAGGGCCCACAAGAAGGCACACACCGGGAATATCTTCCAATTGCTATGGGAAAAAATAAGCCATCTCCTTTTGGGTCTTCAGCAAATGATATTGTCACTGACCCAGTCCCTGGGCTTTGAGACCTTTATCTTCATCGTGGTCTGCCTCAACACAGTCATCCTTGTGGCCCAGACTTTCACTGAGCTAGAGATCCGAGGTG ctctagccatgtaagcatctagcatctctttaaatttaacgaattcctagAGGCCCAAAGGGCTCACAAAAAGGCACACACAGGGAATATCTTCCAATTGCTTTGG---AAAATCAGCCACCTTTTACTTGGTCTGCAGCAA---ATATTATCACTCATTGGGTCTCTTGGTTTTAAGACCATTATCTTCATAGTGGTATGTCTCAACACAGTCATCTTTGTGACCCAGACTTTCACTGAGTTAGAGATTCGTGGAGgtatgtcatgttgcattgcccattaaggtccggtaatgtggagccaacct #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagtATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCtgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagtATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCtgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt #### Catsper1_ID934_11 --> 1 - 0 Original Alignment gCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG ttccacatcttggtgattagagacctatgccctcccctctcttcctccagaCAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGgtgggaccgtcacagtgtgtgggtttggccccctttcggcgtgtagGCTG Alignment from CESAR gCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG ttccacatcttggtgattagagacctatgccctcccctctcttcctccagaCAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGgtgggaccgtcacagtgtgtgggtctctccctgtgcctccccgcagGCTG Alignment from Spaln_aa2Genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG ttccacatcttggtgattagagacctatgccctcccctctcttcctccagACAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGgtgggaccgtcacagtgtgtgggtttggccccctttcggcgtgtagGCTG Alignment from Spaln_nt2Genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG ttccacatcttggtgattagagacctatgccctcccctctcttcctccagACAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGgtgggaccgtcacagtgtgtgggtttggccccctttcggcgtgtagGCTG Alignment from Pairagon GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG ttccacatcttggtgattagagacctatgccctcccctctcttcctccagACAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGgtgggaccgtcacagtgtgtgggtttggccccctttcggcgtgtagGCTG Alignment from Exonerate_protein2genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAG GCTG ttccacatcttggtgattagagacctatgccctcccctctcttcctccagACAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGgtgggaccgtcacagtgtgtgggtttggccccctttcggcgtgtagGCTG Alignment from Exonerate_coding2genome GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAGGCTGGA ttccacatcttggtgattagagacctatgccctcccctctcttcctccagACAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGGTGGGAccgtcacagtgtgtgggtttggccccctttcggcgtgtaggctg Alignment from GeneWise GCAGCGGGTGCTCCACTTCCAGTTCCTGCAGTTGGTGGCAGCGGTAGAACAGCATCAACAGAAGTTTCGTTCCCAAGCGTACGTCATCGATGAGCTTGTGGACATGGCATTTGAGGCTGGAGACGACGACTACGGGAAG ttccacatcttggtgattagagacctatgccctcccctctcttcctccagACAGCGGGTCCTTCATTTCCAGTTCCTACAGTTGGTGGCAGCAGTAGAACAGCATCAAGAGAAGTTCCGGTCCCAAGCATATGTTATTGATGAGCTTGTTGACATGGCATTTGAGGTGGGACCGTCACAGTGTGTGGGTttggccccctttcggcgtgtaggctg #### Cbwd1_ID5355_12 --> 0 - 0 Original Alignment AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagAGTATCATCACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTTTAAATGTATTTATCCAGgtatgtacagacttctatttattaatactaattggctggagcctgcagtt Alignment from CESAR AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagAGTATCATCACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTTTAAATGTATTTATCCAGgtatgtacagacttctatttattaatactaattggctggagcctgcagtt Alignment from Spaln_aa2Genome actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagagtatcatcacagtcacatttgaagtaccaggaagtgcaaaggaagaatgtttaaatgtatttatccaggtatgtacagacttctatttattaatactaattggctggagcctgcagtt Alignment from Spaln_nt2Genome actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagagtatcatcacagtcacatttgaagtaccaggaagtgcaaaggaagaatgtttaaatgtatttatccaggtatgtacagacttctatttattaatactaattggctggagcctgcagtt Alignment from Pairagon AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagAGTATCATCACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTTTAAATGTATTTATCCAGgtatgtacagacttctatttattaatactaattggctggagcctgcagtt Alignment from Exonerate_protein2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagAGTATCATCACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTTTAAATGTATTTATCCAGgtatgtacagacttctatttattaatactaattggctggagcctgcagtt Alignment from Exonerate_coding2genome AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagAGTATCATCACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTTTAAATGTATTTATCCAGgtatgtacagacttctatttattaatactaattggctggagcctgcagtt Alignment from GeneWise AGTATTGTTACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAG actggtgacattctaaaagagtaatctgagggtatacttgtctttcatagAGTATCATCACAGTCACATTTGAAGTACCAGGAAGTGCAAAGGAAGAATGTTTAAATGTATTTATCCAGgtatgtacagacttctatttattaatactaattggctggagcctgcagtt #### Cbwd1_ID5358_10 --> 1 - 2 Original Alignment aGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAag aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagaGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAaggtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga Alignment from CESAR aGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAag aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagaGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAaggtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga Alignment from Spaln_aa2Genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagAGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga Alignment from Spaln_nt2Genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagAGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga Alignment from Pairagon AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagAGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga Alignment from Exonerate_protein2genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagAGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga Alignment from Exonerate_coding2genome AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagAGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga Alignment from GeneWise AGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAG aaggattttcaatttggttattgggtgattaggctggcctgtgttcccagAGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGgtaagttttcagcagttattcaatattttcttctgtcttcttgcagaaga #### Cbwd1_ID5359_9 --> 1 - 2 Original Alignment aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagaTCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAaggtgagctttttttgatagagaataaatttctacagcagtccatgctctgg Alignment from CESAR aTCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAag ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagaTCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAaggtgagctttttttgatagagaataaatttctacagcagtccatgctctgg Alignment from Spaln_aa2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagctttttttgatagagaataaatttctacagcagtccatgctctgg Alignment from Spaln_nt2Genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagctttttttgatagagaataaatttctacagcagtccatgctctgg Alignment from Pairagon ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagctttttttgatagagaataaatttctacagcagtccatgctctgg Alignment from Exonerate_protein2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagctttttttgatagagaataaatttctacagcagtccatgctctgg Alignment from Exonerate_coding2genome ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagctttttttgatagagaataaatttctacagcagtccatgctctgg Alignment from GeneWise ATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAAG ctaattttgcattcctgtgaaacacctcaacacatattccctatttacagATCAATCAATGGCCTGGGAAAAGTTCTGGAAACTCAGAGATCAAGgtgagctttttttgatagagaataaatttctacagcagtccatgctctgg #### Cbwd1_ID5367_4 --> 1 - 1 Original Alignment gGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTg aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacaggGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTggtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca Alignment from CESAR gGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTg aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacaggGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTggtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca Alignment from Spaln_aa2Genome GGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTG aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacagGGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTGgtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca Alignment from Spaln_nt2Genome GGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTG aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacagGGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTGgtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca Alignment from Pairagon GGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTG aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacagGGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTGgtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca Alignment from Exonerate_protein2genome GGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTG aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacagGGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTGgtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca Alignment from Exonerate_coding2genome GGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTG aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacagGGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTGgtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca Alignment from GeneWise GGACAGTGGCCTTAGAGCTATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGATCCTG aactcctgagatcacagcaggagagtttgcgtgtctttttataccaacagGGATTGTGGCCTCAGAGCTATAGAGAATGTGATGCAAAAGAAAGGCAAGTTTGACTACATACTATTAGAGTCCACTGGGCTAGCAGATCCTGgtaagtcacggcaggtatggccacttcatttactcaaaggccatacaaca #### Ccdc147_ID10412_9 --> 0 - 0 Original Alignment AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct Alignment from CESAR AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct Alignment from Spaln_aa2Genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct Alignment from Spaln_nt2Genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct Alignment from Pairagon AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct Alignment from Exonerate_protein2genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct Alignment from Exonerate_coding2genome AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct Alignment from GeneWise AATATGCTCAAGGCGGTCAGTGCGACCCAGAAGCAGGTGGACCTGGTGAAACTCCACGAGCAAGCCAAGAAGAACCTGGAGGAGGAGATCCAGAACTACAAGGACGAGGCCCAGAAGCAGAGGAAGATCATCTTTCAGCTGGAAAAGGAACGGGACCGGTACATCAACGAGGCCAGCGACCTCACCCAGAGG cccacatcagtggaccctaaagaaaaatcttagtcccactctccctccagACTATGCTCAAAGCTGTGAGTGCAACACAAAAGCAGGTGGACCTGGTGAAACTTCATGAACAGGCCAAGAAAAACCTGGATGAGGAGATCCAGAACTACAAGGATGACGCCCAGAAGCAAAGGAAGATCATCTTTCAGTTGGAGAAAGAACGGGACCGATATATCAACAAGGCAAGCGATCTCACCCAAAGGgtagctcacatattcatgctgttgtgaatggacagttgtaccagaaatct #### Ccdc147_ID10425_14 --> 1 - 0 Original Alignment gCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccaggCAG---CTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc Alignment from CESAR gCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccaggCAG---CTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc Alignment from Spaln_aa2Genome GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccagGCAG---CTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc Alignment from Spaln_nt2Genome GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccagGC---AGCTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc Alignment from Pairagon GGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccagGCAGCTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc Alignment from Exonerate_protein2genome GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccagGCAG---CTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc Alignment from Exonerate_coding2genome GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccagGCAG---CTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc Alignment from GeneWise GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG ggtccattatgtggttattattatttagtttctttctccctttaatccagGCAG---CTCTATCACATGCAAAGAGAGTTCTTGAAAGATAAGATGAGGTGCCGTACACTAGAGGAGGAATTAGAGAACCCCATGAGGGTGCATAGATGGAGAAAGCTTGAGgtaagtcctgtttaattgtccctccactccaagctctgtctctaggtggc #### Ccdc147_ID10441_16 --> 0 - 0 Original Alignment GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca Alignment from CESAR GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca Alignment from Spaln_aa2Genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca Alignment from Spaln_nt2Genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca Alignment from Pairagon GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca Alignment from Exonerate_protein2genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca Alignment from Exonerate_coding2genome GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca Alignment from GeneWise GAGAAAGAGAAGCTGTATGTGGAGCTGAAGCACATCTTGGCCCGGCAGCCTGGCCCAGAGGCTGCGGAGCAGCTGCAGATCTACCGGCATACACTGCGCGAGAAGACTAAGCAGCTGAAA tgtaaacttggaatgtgttggtttatgatctttctttaaaaacaatgcagGAAAAAGAGAAGCTATACGTGGAGCTGAGGCACATTTTGGCCCGTCAACCCGGCCCAGAGGCTGCAGAGCAACTACAGATCTACCATCACACATTGTGTGAGAAGACTAAGCAGCTGAAGgtaagacacccactagtttgcaggcatattgagagactctgggctcctca #### Ccdc172_ID12718_2 --> 2 - 0 Original Alignment taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa Alignment from CESAR taAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagtaAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa Alignment from Spaln_aa2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa Alignment from Spaln_nt2Genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa Alignment from Pairagon TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa Alignment from Exonerate_protein2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa Alignment from Exonerate_coding2genome TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa Alignment from GeneWise TAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTGAGTGAAGAGAAAATCAAGTTGGAATCCAAG aattgctaagacctgttttgaagtagttccactccctcccctccgtgcagTAAGGTCGGAGATTACCAGATGTCGTGGGAAAATTAAGAAAGCAACAGAGGACCTAAGTGAAGAAAAAATCAAGTTGGAATCCAAGgtgagtatgctaatactatagcttatatttggggaccactcaccatctaa #### Ccdc172_ID12722_3 --> 0 - 0 Original Alignment GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg Alignment from CESAR GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg Alignment from Spaln_aa2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg Alignment from Spaln_nt2Genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg Alignment from Pairagon GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg Alignment from Exonerate_protein2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg Alignment from Exonerate_coding2genome GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg Alignment from GeneWise GTTCAGCAGTTGTCTGAGAAATCTTTCCTCTTAGAGCTTCTGAAAACCCATGAAAACGCATTAGAGAGACAGCTCAGTGAGATTATCAGCGAGCGGGACACACTGCTCCAAGCCTGC ctgagtggctcaggccacatatttatattccctggatactcctcctgcagGTACAGCAGTTGTCTGAGAAATCTTTCCTCTCAGAGCTTCTGAGAACTCATGAGAACACTTTGGAGAGACACCTCAGTGAGATCATTAGTGAGCGGGATATGCTACTCCAAGGCTGTgtattactctgattttttgcacgttgattttgtatcctgagactttgctg #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagggTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAggtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagggTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAggtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaagtccccacatttccttcctgcaggG Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaagcctggccttctccttgccccaggG Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagtccccacatttccttcctgcagGG Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagtccccacatttccttcctgcagGG Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagtccccacatttccttcctgcagGG Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagtccccacatttccttcctgcagGG Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagtccccacatttccttcctgcagGG Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagtccccacatttccttcctgcagGG #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTT---GAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACT----GGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG----------CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat #### Ccdc88b_ID1834_15 --> 0 - 2 Original Alignment GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAG---GAGAACCAGCACCAGag cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGcggtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt Alignment from CESAR GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGag cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGcggtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt Alignment from Spaln_aa2Genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGAG cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGCGgtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt Alignment from Spaln_nt2Genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAACAG---GAGAACCAGCACCAGAG cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGCGgtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt Alignment from Pairagon GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAG---AACAGGAGAACCAGCACCAGAG cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGCGgtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt Alignment from Exonerate_protein2genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGAG cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGCGgtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt Alignment from Exonerate_coding2genome GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGAG cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGCGgtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt Alignment from GeneWise GAGCTAGAGAAGGCTGTGCTACGGGGCCAGGAACTGGGGGACCGGCTGGAGCATCTGCAGGAGGAGCTAGAACAGGCAGCCTTAGAGCGCCAGAAGTTCCTTCAAGAA---CAGGAGAACCAGCACCAGAG cagtgtgtggagatgagtgctacctcttatacctatttctgttctgttagGAGCTAGAAAAGGCTGTACTAGAGGGTCAGGAATTGGGGGACCAGCTGGAACATCTGCAGGAGGAGCTAAATCAGTCTGCCTTGGAGCGCCAGAAGTTCCTCCAGGAACAACAAGAGAACCAACACCAGCGgtaagtatattggcagacagatgaagcagagagagtaataaggtctggtt #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagcgTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagcgTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCA---ACATAT------GGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACATATG---------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAA---GAGGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGA---GGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGA---GGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Exonerate_coding2genome GAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgCAGACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct #### Ccdc88b_ID1842_7 --> 0 - 0 Original Alignment GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGGG------GCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag Alignment from CESAR GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGGG------GCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag Alignment from Spaln_aa2Genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGGG------GCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag Alignment from Spaln_nt2Genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGG------GGCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag Alignment from Pairagon GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGG------GGCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag Alignment from Exonerate_protein2genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGGG------GCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag Alignment from Exonerate_coding2genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGGG------GCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag Alignment from GeneWise GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGGCGCGGGAGCGCGATCTGGGGGCACAG actcttcagctaaccttcacctccagattttcaactcttttgttttctagGTGACTCAACCAGGTGCTGGTGTGGTACTGGCACTAGCTGGACCCGAGTCTGGG------GCAGCTGAGGACCTTGAGATGCAGTTACAGAGTCTGACAGGGATGACATCCAGGCTTGCACGGGAACGTGAACTGGGGGCACAGgtactggatgggcaagggattagtgaggacaggttaggttagtgtgggag #### Ccdc88b_ID1843_6 --> 0 - 0 Original Alignment TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAAgtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct Alignment from CESAR TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAAgtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct Alignment from Spaln_aa2Genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAAgtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct Alignment from Spaln_nt2Genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAAgtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct Alignment from Pairagon TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAAgtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct Alignment from Exonerate_protein2genome TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAAgtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct Alignment from Exonerate_coding2genome ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagtgtgaacaccgggagctcttcatccgccacatccgtggcctcagccttgatgtccagagtgagctggctggtgctatccaggaagtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct Alignment from GeneWise TGTGAACACCGGGAGCTCTTCATCCGTCACATCCGGGGCCTCAGCCTTGACGTCCAGAGCGAGCTGGCTGGTGCAATCCAGGAG ctatgtggcggacctctgtgtggtaattgggaagcatggttgtcccccagTGTGAACACCGGGAGCTCTTCATCCGCCACATCCGTGGCCTCAGCCTTGATGTCCAGAGTGAGCTGGCTGGTGCTATCCAGGAAgtaggttagtagcagtgccatctgtgggcttggtttttagattagtctct #### Ccdc88b_ID1844_5 --> 2 - 0 Original Alignment aaGAGGCAGTGGAC------------------------------------------------------GAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGGTGAAAAGGAAGCTTGAAAGCATTCTTAGGTTGCTGTTAGGGGCTTCAGTACGGgtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from CESAR aaGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Spaln_aa2Genome AAGAGGCAGTGGACGAGCTGGAAAGC----- -ATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTgtggttgttattgggggcttcaatacaggtgaaaaggaagcttgaaagCATTCTTAGGTTGCTGTTAGGGGCTTCAGTACGGgtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Spaln_nt2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Pairagon AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Exonerate_protein2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Exonerate_coding2genome tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagaggaggcagtggatgagctagagagcatcctgtggttgttattgggggcttcaatacaggtgaaaaggaagcttgaaagcattcttaggttgctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from GeneWise AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg #### Ccnj_ID8042_3 --> 2 - 1 Original Alignment gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg agtgtgtgtagggcggtactggctatagcctttctagctttctcttctaggcAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtaccttgtctcccctcaggttatggcacatggctaattaactgttccat Alignment from CESAR gcAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAg agtgtgtgtagggcggtactggctatagcctttctagctttctcttctaggcAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAggtaccttgtctcccctcaggttatggcacatggctaattaactgttccat Alignment from Spaln_aa2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG agtgtgtgtagggcggtactggctatagcctttctagctttctcttctagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaccttgtctcccctcaggttatggcacatggctaattaactgttccat Alignment from Spaln_nt2Genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG agtgtgtgtagggcggtactggctatagcctttctagctttctcttctagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaccttgtctcccctcaggttatggcacatggctaattaactgttccat Alignment from Pairagon GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG agtgtgtgtagggcggtactggctatagcctttctagctttctcttctagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaccttgtctcccctcaggttatggcacatggctaattaactgttccat Alignment from Exonerate_protein2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG agtgtgtgtagggcggtactggctatagcctttctagctttctcttctagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaccttgtctcccctcaggttatggcacatggctaattaactgttccat Alignment from Exonerate_coding2genome GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG agtgtgtgtagggcggtactggctatagcctttctagctttctcttctagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaccttgtctcccctcaggttatggcacatggctaattaactgttccat Alignment from GeneWise GCAAATTTGAAGAAAAAGAAGACAGCGTGCCTAAGCTCGAGCAGCTCAATAGCCTGGGCTGTATGACGAACATGAACCTCGTGCTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTGTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACGGCTGCCCACTTCATTGAGTACTACCTATCTGAAGCCGTGCACGAGACAGACCTTCACGACGGCTGGCCGATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAG agtgtgtgtagggcggtactggctatagcctttctagctttctcttctagGCAAATTTGAGGAGAAAGAAGACAGTGTACCTAAGCTAGAGCAGCTCAATAGCCTGGGTTGTATGACAAACATGAACCTTGTGTTCACCAAGCAGACCCTGCTGCATATGGAGCTGCTCCTTTTAGAGACCTTTCAGTGGAACCTCTGCCTGCCCACAGCTGCCCACTTCATTGAGTATTACCTAGCTGAAGCTGTGCACGAGACAGACCATCATGATGGCTGGCCAATGGTTTGCTTGGAGAAGACTAAACTCTACATGGCCAAATATGCAGATTACTTCCTGGAAGTGTCTCTGCAAGgtaccttgtctcccctcaggttatggcacatggctaattaactgttccat #### Ccs_ID661_7 --> 0 - 2 Original Alignment GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGaggtaggacatataacccccaacggagccagtcttttttttttatcatttta Alignment from CESAR GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGaggtaggacatataacccccaacggagccagactttggctcacccacatcca Alignment from Spaln_aa2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagtcttttttttttatcatttta Alignment from Spaln_nt2Genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagtcttttttttttatcatttta Alignment from Pairagon -----------------------------------------------------TGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGGTTGG--------------------------------------------- GCAGATACACAAGGCTGATGGTACTGACAACTTCTTTCAATATGCATAAGGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGGTAGGACATATAACCCCCAACGGAGCCAGTCTTTTTTTTTTATCATTTTA Alignment from Exonerate_protein2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagtcttttttttttatcatttta Alignment from Exonerate_coding2genome GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagtcttttttttttatcatttta Alignment from GeneWise GTGTGGGATGTGATTGGCCGCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG gcagatacacaaggctgatggtactgacaacttctttcaatatgcataagGTTTGGGATGTGATTGCCCGCACCCTGGTTATTGATGAGGGAGAAGATGATGTGGGCCGGGGAGGCCACCCTTTATCCAAGATCACAGGGAATTCGGAGAAGAGgtaggacatataacccccaacggagccagtcttttttttttatcatttta #### Cd274_ID6272_3 --> 2 - 1 Original Alignment ccCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAg tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagcaCCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAggtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact Alignment from CESAR ccCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAg tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagcaCCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAggtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact Alignment from Spaln_aa2Genome CCCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAG tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagCACCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAGgtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact Alignment from Spaln_nt2Genome CCCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAG tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagCACCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAGgtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact Alignment from Pairagon CCCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAG tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagCACCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAGgtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact Alignment from Exonerate_protein2genome CCCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAG tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagCACCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAGgtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact Alignment from Exonerate_coding2genome CCCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAG tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagCACCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAGgtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact Alignment from GeneWise CCCCATACCGCAAAATCAACCAGAGAATTTCCGTGGATCCAGCCACTTCTGAGCATGAACTAATATGTCAGGCCGAGGGTTATCCAGAAGCTGAGGTAATCTGGACAAACAGTGACCACCAACCCGTGAGTGGGAAGAGAAGTGTCACCACTTCCCGGACAGAGGGGATGCTTCTCAATGTGACCAGCAGTCTGAGGGTCAACGCCACAGCGAATGATGTTTTCTACTGTACGTTTTGGAGATCACAGCCAGGGCAAAACCACACAGCGGAGCTGATCATCCCAG tgcagggtgtaggtcctcactgcagttgtttctcttttttctccctctagCACCATACCACAAACTCAATGGAAGAATTTCTGTCGGTCCAGCAACCACTGAACATGATCTAATATGCCAAGCTGAGGGTTATTCAGAAGCTGAGGTAATCTGGACCAACAGTGACCACCAGCCTGTAAGTGCAAAGAGAAGTCTGACGAATTCACGAACTGAGGGGATGTTCCTCAATGTGACCAGTAGTCTAAAGATCAATGCCACAGCAAATGATGTTTTCTACTGTACATTCTGGAGACTACAGCCTGGGCAAAACCAAACAGCACAGCTGATTGTCCCAGgtgagttgtcctttacctttgcttagattcatacccaaaatcttgccact #### Cd5_ID2989_9 --> 2 - 1 Original Alignment tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagtgTCTTTT---CAAAGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAagtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca Alignment from CESAR tgTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAg ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagtgTCTTTTCAA---AGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAagtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca Alignment from Spaln_aa2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagTGTCTTTTCAA---AGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAAgtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca Alignment from Spaln_nt2Genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagTGTCTTT---TCAAAGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAAgtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca Alignment from Pairagon TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagTGTCTTTTCA---AAGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAAgtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca Alignment from Exonerate_protein2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagTGTCTTTT---CAAAGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAAgtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca Alignment from Exonerate_coding2genome TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagTGTCTTTT---CAAAGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAAgtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca Alignment from GeneWise TGTCTTTCCATCGAAGCCACACAGCAACTGTGCGGTCCCAAGTTGAGAACCCAACAGCCTCTCATGTGGACAATGAATACAGCCAGCCTCCCAGGAACTCTCACCTGTCTGCTTATCCAG ttttatttttgcctatgcaaacaacgattgtggattctctgtgattttagTGTCTTTT---CAAAGCCATACAGCAACAGTACGGTCCCAAGTTGAAAATCCCACTACATCGCATGTTGTTAATGAATATAGCCAGCCTACCAGGAACTCACATCTGTCTGCCTATCCAAgtgagtgggtatacagttgctggggtgctttcatgaccagtgacagcaca #### Cd5_ID2995_3 --> 2 - 1 Original Alignment atATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAg agCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcctagatATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAggtaagagacagcctctttcaatcttccctccagaaCCCCAGAGAACAGCT Alignment from CESAR atATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAg agCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcctagatATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAggtaagagacagttatatctttcatttttaacagaaCCCCAGAGAACAGCT Alignment from Spaln_aa2Genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcctagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAGgtaagagacagcctctttcaatcttccctccagAACCCCAGAGAACAGCT Alignment from Spaln_nt2Genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcctagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAGgtaagagacagcctctttcaatcttccctccagAACCCCAGAGAACAGCT Alignment from Pairagon ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcctagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAGgtaagagacagcctctttcaatcttccctccagAACCCCAGAGAACAGCT Alignment from Exonerate_protein2genome ATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcctagATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAGgtaagagacagcctctttcaatcttccctccagAACCCCAGAGAACAGCT Alignment from Exonerate_coding2genome CTAGATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTAG AGCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcCTAGATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAGgtaagagacagcctctttcaatcttccctccagAACCCCAGAGAACAGCT Alignment from GeneWise CTAGATATCCAGGTGATGCTAAGTGGCTCCAATTCCAAGTGTCAGGGTCAAGTGGAGATCCAGATGGAAAACAAGTGGAAAACAGTGTGCAGTTCCAGTTGGAGGCTGAGCCAGGACCATTCGAAAAATGCCCAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCCTTGGCCCTTGGTCCTTTCCCTTCATTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCGTGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCGCTGAGCCTGATCTGCCTA---------------------------------GAGCCCCAGAGAACGACA taaaatcctcattatcacacctcatgccttcccttgtgtcctttgcCTAGATATCCAGGTGATGCTGAGTGGCTCCAATTCAAAGTGTCAAGGTCAAGTGGAGATTCAGATGGAAAACAAATGGAAAACAGTGTGCAGTTCCTGTTGGAGGCTGAGCCAGGACCATTCAAAAAATGCACAGCAGGCCTCTGCAGTGTGCAAACAGCTGAGATGTGGTGACCCGTTGGCCCTTGGTCCTTTCCCTTCCTTGAACAGACCCCAGAACCAGGTCTTCTGCCAAGGATCTCCATGGTCTATATCCAACTGCAACAACACAAGTTCACAAGACCAGTGCCTTCCACTGAGCCTGAGCTGCCTAGGTAAGAGACAGCCTCTTTCAATCTTCCCTCCAGAACCCCAGAGAACAGCT #### Cd6_ID3014_10 --> 2 - 1 Original Alignment atTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCC---------TTGGAGGAAg gtgcagtagagtgtatatatgtcgctcttactgagtgcatattcctacagacTCCCAGCGCCACCGGGTCGCAGAGGAGGAAGCTCAGCAGAACAGGTTCCAGATGCCCCCCATGCCCCCCTTGGAGGAAggtgagtttttgaataggtctgtctgggtcccagccttaccttcaaattcc Alignment from CESAR atTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCC---------TTGGAGGAAg gtgcagtagagtgtatatatgtcgctcttactgagtgcatattcctacagacTCCCAGCGCCACCGGGTCGCAGAGGAGGAAGCTCAGCAGAACAGGTTCCAGATGCCCCCCATGCCCCCCTTGGAGGAAggtgagtttttgaataggtctgtctgggtcccagccttaccttcaaattcc Alignment from Spaln_aa2Genome ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAG---------ATGCCACCCTTGGAGGAAG gtgcagtagagtgtatatatgtcgctcttactgagtgcatattcctacagACTCCCAGCGCCACCGGGTCGCAGAGGAGGAAGCTCAGCAGAACAGGTTCCAGATGCCCCCCATGCCCCCCTTGGAGGAAGgtgagtttttgaataggtctgtctgggtcccagccttaccttcaaattcc Alignment from Spaln_nt2Genome ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCC---------TTGGAGGAAG gtgcagtagagtgtatatatgtcgctcttactgagtgcatattcctacagACTCCCAGCGCCACCGGGTCGCAGAGGAGGAAGCTCAGCAGAACAGGTTCCAGATGCCCCCCATGCCCCCCTTGGAGGAAGgtgagtttttgaataggtctgtctgggtcccagccttaccttcaaattcc Alignment from Pairagon ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGC---------CACCCTTGGAGGAAG gtgcagtagagtgtatatatgtcgctcttactgagtgcatattcctacagACTCCCAGCGCCACCGGGTCGCAGAGGAGGAAGCTCAGCAGAACAGGTTCCAGATGCCCCCCATGCCCCCCTTGGAGGAAGgtgagtttttgaataggtctgtctgggtcccagccttaccttcaaattcc Alignment from Exonerate_protein2genome ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAG---------ATGCCACCCTTGGAGGAAG gtgcagtagagtgtatatatgtcgctcttactgagtgcatattcctacagACTCCCAGCGCCACCGGGTCGCAGAGGAGGAAGCTCAGCAGAACAGGTTCCAGATGCCCCCCATGCCCCCCTTGGAGGAAGgtgagtttttgaataggtctgtctgggtcccagccttaccttcaaattcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCC---------TTGGAGGAAG gtgcagtagagtgtatatatgtcgctcttactgagtgcatattcctacagACTCCCAGCGCCACCGGGTCGCAGAGGAGGAAGCTCAGCAGAACAGGTTCCAGATGCCCCCCATGCCCCCCTTGGAGGAAGgtgagtttttgaataggtctgtctgggtcccagccttaccttcaaattcc #### Cd6_ID3021_3 --> 2 - 1 Original Alignment agGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAg ttgaaagacacagaactaacaaagtccattattttctgattctgttgcagagGATCGACTTGGAATTCACCTGGTGAATGGGAGCAGTCACTGCAGTGGCTCTGTGAAGGTTCTACTTGAGTCCTGGAAGCCTGTGTGCACTGCACACTGGAATGGGGCTGCTACAGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCAGGAAAGGTTACCTACCTCATGCCTCCCACCCCTGAGCTGTCTCCAGGTGCCACTTCTGGAAACCCAAGTAGTGCCGGGAATATGACATGGGCATGC---------AAGAGATGCAGGGGGGCAAATTGGCAGTTCTGCAAGGTACAAGACCAGGAATGTAGCAGTGACAGACGCCTGGTATGGGTCACCTGTGCAggtaggtaggtcaggtgtaatgtctgtccccatcaccccaaatctaactac Alignment from CESAR agGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAg ttgaaagacacagaactaacaaagtccattattttctgattctgttgcagagGATCGACTTGGAATTCACCTGGTGAATGGGAGCAGTCACTGCAGTGGCTCTGTGAAGGTTCTACTTGAGTCCTGGAAGCCTGTGTGCACTGCACACTGGAATGGGGCTGCTACAGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCAGGAAAGGTTACCTACCTCATGCCTCCCACCCCTGAGCTGTCTCCAGGTGCCACTTCTGGAAACCCAAGTAGTGCCGGGAATATGACATGGGCATGC---------AAGAGATGCAGGGGGGCAAATTGGCAGTTCTGCAAGGTACAAGACCAGGAATGTAGCAGTGACAGACGCCTGGTATGGGTCACCTGTGCAggtaggtaggtcaggtgtaatgtctgtccccatcaccccaaatctaactac Alignment from Spaln_aa2Genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ttgaaagacacagaactaacaaagtccattattttctgattctgttgcagAGGATCGACTTGGAATTCACCTGGTGAATGGGAGCAGTCACTGCAGTGGCTCTGTGAAGGTTCTACTTGAGTCCTGGAAGCCTGTGTGCACTGCACACTGGAATGGGGCTGCTACAGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCAGGAAAGGTTACCTACCTCATGCCTCCCACCCCTGAGCTGTCTCCAGGTGCCACTTCTGGAAACCCAAGTAGTGCCGGGAATATGACATGGGCATGC---------AAGAGATGCAGGGGGGCAAATTGGCAGTTCTGCAAGGTACAAGACCAGGAATGTAGCAGTGACAGACGCCTGGTATGGGTCACCTGTGCAGgtaggtaggtcaggtgtaatgtctgtccccatcaccccaaatctaactac Alignment from Spaln_nt2Genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ttgaaagacacagaactaacaaagtccattattttctgattctgttgcagAGGATCGACTTGGAATTCACCTGGTGAATGGGAGCAGTCACTGCAGTGGCTCTGTGAAGGTTCTACTTGAGTCCTGGAAGCCTGTGTGCACTGCACACTGGAATGGGGCTGCTACAGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCAGGAAAGGTTACCTACCTCATGCCTCCCACCCCTGAGCTGTCTCCAGGTGCCACTTCTGGAAACCCAAGTAGTGCCGGGAATATGACATGGGCATG-----CA----AGAGATGCAGGGGGGCAAATTGGCAGTTCTGCAAGGTACAAGACCAGGAATGTAGCAGTGACAGACGCCTGGTATGGGTCACCTGTGCAGgtaggtaggtcaggtgtaatgtctgtccccatcaccccaaatctaactac Alignment from Pairagon AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ttgaaagacacagaactaacaaagtccattattttctgattctgttgcagAGGATCGACTTGGAATTCACCTGGTGAATGGGAGCAGTCACTGCAGTGGCTCTGTGAAGGTTCTACTTGAGTCCTGGAAGCCTGTGTGCACTGCACACTGGAATGGGGCTGCTACAGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCAGGAAAGGTTACCTACCTCATGCCTCCCACCCCTGAGCTGTCTCCAGGTGCCACTTCTGGAAACCCAAGTAGTGCCGGGAATATGACATGGGCATG---------CAAGAGATGCAGGGGGGCAAATTGGCAGTTCTGCAAGGTACAAGACCAGGAATGTAGCAGTGACAGACGCCTGGTATGGGTCACCTGTGCAGgtaggtaggtcaggtgtaatgtctgtccccatcaccccaaatctaactac Alignment from Exonerate_protein2genome AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ttgaaagacacagaactaacaaagtccattattttctgattctgttgcagAGGATCGACTTGGAATTCACCTGGTGAATGGGAGCAGTCACTGCAGTGGCTCTGTGAAGGTTCTACTTGAGTCCTGGAAGCCTGTGTGCACTGCACACTGGAATGGGGCTGCTACAGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCAGGAAAGGTTACCTACCTCATGCCTCCCACCCCTGAGCTGTCTCCAGGTGCCACTTCTGGAAACCCAAGTAGTGCCGGGAATATGACATGGGCA---------TGCAAGAGATGCAGGGGGGCAAATTGGCAGTTCTGCAAGGTACAAGACCAGGAATGTAGCAGTGACAGACGCCTGGTATGGGTCACCTGTGCAGgtaggtaggtcaggtgtaatgtctgtccccatcaccccaaatctaactac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG ttgaaagacacagaactaacaaagtccattattttctgattctgttgcagAGGATCGACTTGGAATTCACCTGGTGAATGGGAGCAGTCACTGCAGTGGCTCTGTGAAGGTTCTACTTGAGTCCTGGAAGCCTGTGTGCACTGCACACTGGAATGGGGCTGCTACAGAGGCTGTATGCAAAGCACTCAACTGTGGTGATTCAGGAAAGGTTACCTACCTCATGCCTCCCACCCCTGAGCTGTCTCCAGGTGCCACTTCTGGAAACCCAAGTAGTGCCGGGAATATGACATGGGCA---------TGCAAGAGATGCAGGGGGGCAAATTGGCAGTTCTGCAAGGTACAAGACCAGGAATGTAGCAGTGACAGACGCCTGGTATGGGTCACCTGTGCAGgtaggtaggtcaggtgtaatgtctgtccccatcaccccaaatctaactac #### Cdc37l1_ID6195_2 --> 0 - 0 Original Alignment ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa Alignment from CESAR ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa Alignment from Spaln_aa2Genome ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa Alignment from Spaln_nt2Genome ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa Alignment from Pairagon ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa Alignment from Exonerate_protein2genome ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa Alignment from Exonerate_coding2genome ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa Alignment from GeneWise ATGTATAGCCACGGGATTGAGCTGGCTTGCCAAAAGCAGAAAGAATTTGTGAAGAGCTCTGTTGCATGTAAATGGAATCTTGCTGAAGCCCAGCAGAAACTTGGCAGCTTAGCACTGCATAACTCTGAGTCCTTGGATCAGGAACACGCCAAAGCACAGACCGCGGTGTCAGAACTGAGGCAGCGGGAAGAAGAGTGGCGACAGAAAGAAGAGGCTCTGGTCCAAAGAGAGAGGATGTGTCTCTGGAACATGGATGCCATTAGCAAGGATGTTTTTAATAAG gttaattgtgcttccgttgcttactaatagcaaggctccttttcttccagATGTATAGCCATGAGATTGAATTAGCCTGTCAAAAGCAGAAAGGCTTTGTGAAAAGTTCTGTCGCATGTAAGTGGAATCTTGCTGAAGCCCAGGAGAAGCTTGGCAGTTTAACACTTCACAACTCTGAGTTGTTGGATCAGGAACATGCCAAAGCACAGACAGCAGTGTCAGAACTGAGGCAGCAAGAAGAAGAGTGGCGACAAAAAGAGGAGGCTCTATTTCACAGAGAGAGGATGTGTCTATGGAACATGGATGGCATTAGTAAGGATGTTTTTAATAAGgtataatcataactggatcattaggtgggcagggctaatcaaaagcacaa #### Cdc37l1_ID6197_4 --> 2 - 0 Original Alignment gtATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcaggcATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg Alignment from CESAR gtATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcaggcATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg Alignment from Spaln_aa2Genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcagGCATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg Alignment from Spaln_nt2Genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcagGCATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg Alignment from Pairagon GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcagGCATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg Alignment from Exonerate_protein2genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcagGCATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg Alignment from Exonerate_coding2genome GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcagGCATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg Alignment from GeneWise GTATGTTGAGTCGCTGGGATGACAGTCAGAGGTTTTTGTCTGACCACCCACACCTCGTATGTGAAGAGACTGCTAAATATCTTATTTTATGGTGTTTCCACCTAGAAGCTGAGCAG atatggtctccagaataattgtacaattcctggtgtttctcttcctgcagGCATGTTAAGTTGCTGGGATGACAGTCAAAGGTTTTTGTCTGACCACCCACACCTCATATGTGAAGAGACTGCTAAATATCTTGTCTTATGGTGTTTCCACCTGGAAGCTGAGCAGgtgagttttcaaaattgaacatgtccttcagcggacttcttgccctttcg #### Cdc42bpg_ID1578_8 --> 0 - 0 Original Alignment GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac Alignment from CESAR GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac Alignment from Spaln_aa2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac Alignment from Spaln_nt2Genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac Alignment from Pairagon GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac Alignment from Exonerate_protein2genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac Alignment from Exonerate_coding2genome GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac Alignment from GeneWise GACCACCTCCAGTTCCCTGCTGATGTGACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggtcatctttattgacaggacccaccaacatctgaacctctttttcacagGACCATCTCCAATTCCCTGCCGATGTCACAGATGTGCCTGCTAGTGCCCAAGATCTGATCTGCCAGCTGTTATGCCGTCAAGAGGAGCAGCTAAGCCGTGGTGGGCTGGATGACTTCCACAAGCATGCTTTCTTTGAGGGGGTTGACTGGGAGAGACTCACTACCAGCACAGCACCATACATCCCTGAGCTTCGAGGCCCAATGGACACTTCCAACTTCGATGTAGATGACGATACCCTCAACCGTTCAgtaaggtatagatattgctattagacactacctttcaactaaaagaacac #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagagCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAggtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagagCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAggtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag #### Cdc42bpg_ID1588_18 --> 1 - 0 Original Alignment gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcaggGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat Alignment from CESAR gGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcaggGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat Alignment from Spaln_aa2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat Alignment from Spaln_nt2Genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat Alignment from Pairagon GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat Alignment from Exonerate_protein2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat Alignment from Exonerate_coding2genome GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat Alignment from GeneWise GGTGAATGACGAGAAGGTCTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCTGAGGAGCTGGAGTCCTTGAGGAATGTGGGCACGCAGACACTCCCTACCCGGCCTCTG gaacccgctcacatatagcttgtttctctttcaaactctcctcccctcagGGTAAATGATGAGAAAGTTTCAAGAGGCTACCTGCAGGCCTTGGCTACTAAGATGGCAGAGGAGCTAGAGTCCTTGAGGAATGTGGGCACACAGACACTTCCTACCCGTCCTTTGgtaaagttgcacatgagggaatgtatgtagacttaagtggcaccttacat #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAG---CAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGggtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from CESAR cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAG---GAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGggtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCT---GCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Pairagon CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGC---CCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAG---GAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg #### Cdc42bpg_ID1599_29 --> 2 - 1 Original Alignment acCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATg tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagacCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATggtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata Alignment from CESAR acCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATg tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagacCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATggtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata Alignment from Spaln_aa2Genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagACCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata Alignment from Spaln_nt2Genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagACCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata Alignment from Pairagon ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagACCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata Alignment from Exonerate_protein2genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagACCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata Alignment from Exonerate_coding2genome ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagACCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata Alignment from GeneWise ACCAAGAGCGTCTTGCCCTGGGCACTGAGGAGGGGTTGTTTGTGATCCATCTTCACAGCAATG tctatacccatctgttactggtaagcaaaaatgcaatccattgtttctagACCAAGAACGGCTTGCCCTGGGGACTGAGGAAGGGTTGTTTGTGATTCATCTTCACAGCAATGgtaagtcatcaatgcggcacaacagcacggtgatgtgcccaagtataata #### Cdc42bpg_ID1600_30 --> 2 - 1 Original Alignment acATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGg ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagacATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGggtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc Alignment from CESAR acATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGg ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagacATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGggtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc Alignment from Spaln_aa2Genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagACATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGGgtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc Alignment from Spaln_nt2Genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagACATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGGgtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc Alignment from Pairagon ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagACATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGGgtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc Alignment from Exonerate_protein2genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagACATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGGgtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc Alignment from Exonerate_coding2genome ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagACATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGGgtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc Alignment from GeneWise ACATCTTCCAGGTGGGAGACTGCCGCCGGGTGCAGCGGTTGGCTGTGAGCTCTGCGGCTGGCCTCCTGGCTGTGCTCTGTGGCCGTGGCCCCAGTGTGCGCCTCTTCGCCCTGGACGAACTGGAGAGTGCTGAGGTGGCGGGTGCCAAGATCCCGGAATCCCGAGGCTGTCAGGCTTTGGTCGCTGGGCGCATCTTGCAGGCCCGGACTCCAGTGCTCTGTGTGGCAGTCAAACGCCAAGTTCTCTGTTACCAGCTGGGCCCAGGACCAGGGCCCTGGCAGCGCCGCATCCGAGAGCTGCAAGCACCAGCTCCGGTGCAGAGCCTGGGCTTGCTGGGTGATCGGCTCTGTGTGGGCGCCGCAGGCACCTTCGCTCTCTACCCGCTGCTCAATGAGGCTGCACCCTTAGCGCTGGGAACTGGTCTGGTGGCCGAGGAGCTGCCTGCATCCCGTGGGGGCCTAGGTGAGGCACTGGGTGCCGTGGAGCTCAGCCTCAGCGAGCTCCTGCTGCTCTTCGCCACTGCCGGCGTCTACGTGGATAGTGCTGGCCGCAAGTCACGAAGCCACGAGCTGCTGTGGCCAGCTGCACCCACTGGCTGGG ctacacaacgcaccttacattacaattcactgagcagtgctccctctcagACATCTTCCAGGTTGGAGACTGCCGTCGAGTGCAGCAATTGGCAGTTAGCTCTGTGGCTGGCCTCCTTGCTGTGCTCTGTGGGCGTGGCCCCAGTGTGCGCCTGTTTGCCCTGGACGAGCTTGAGAGCGCTGAGGTGGCAGGTGCGAAGATCCCAGAATCCCGTGACTGTCAAGCTTTGGTTGCTGGCCGCATTTTGGAGGCCCGGACTCCAGTGCTCTGTGTAGCAGTCAAGTGTCAAGTCCTTTGTTATCAGTTGGGTCCTGGACCAGGCCCCTGGCAATGCCGTATCAGAGAGCTACAAGCACCAGCCCCAGTGCAGAGTCTTGGCTTGCTTGGTGATCGGCTCTGTGTGGATGCCACTGGCACCTTTGCTCTCTACCCACTACTCAATGAGGCTGCACCCTTAGCATTAGGAACTGGACTGGTAACTGAGGAACTACCTGCATCCTGTGGGGGCCTTGGTGAGGCCCTAGGGGCTGTTGAGCTCAGTCACAGTGAGCTGTTACTGCTGTTTGCTGCTGCTGATGTCTATGTGGATAGTGCCGGCCGCAAATCACGTAGCCATGATTTGTTATGGCCAGCTGCACCTACTGGCTGGGgtaaaactcaggatcactgattattcccatggaggtttgcaagatacacc #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagaGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagaGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagggCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCATCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTCTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagggCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCATCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTCTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCATCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTCTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCATCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTCTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCATCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTCTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Exonerate_protein2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCATCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTCTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from Exonerate_coding2genome agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagggccaaggactttgctaactcagccttcagagtcatcaaaacgcaagtcaggttcagacctcacaaactcattctctgaaacctggcaaagggtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt Alignment from GeneWise GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcaccttgcgatgtttgtttgtaaccttccttaatcattcctccaccagGGCCAAGGACTTTGCTAACTCAGCCTTCAGAGTCATCAAAACGCAAGTCAGGTTCAGACCTCACAAACTCATTCTCTGAAACCTGGCAAAGGgtgcgaacttggccccccaggtccaaaagtggttgcacaaaccaagattt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from CESAR GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Pairagon GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from GeneWise GCGATGAAGCCACCTGGTTCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt #### Cep78_ID3975_11 --> 0 - 0 Original Alignment AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca Alignment from CESAR AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca Alignment from Spaln_aa2Genome AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca Alignment from Spaln_nt2Genome AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca Alignment from Pairagon AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca Alignment from Exonerate_protein2genome AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca Alignment from Exonerate_coding2genome AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca Alignment from GeneWise AAATCAGATTTCCCGGTGACTGTGACAGTAGAAAGTCCTTCATCCTCAGAAACTGACGAGACTGAAGATTCTTCAGAAAGTGTCCAGGAAGCGCCTCAGAAAACCAGCATAAAAGAAGAAACATTACAG agtttctggttcttcacgaagatcaatgagtgcgagtctttctcttccagAAATTAGACTTTCCAGTTACTGTCACTGTAGAAAGTCCTACATCCTCAGAAACTGATGAGACTGAAGATTCTTCTGAGAGTGTCCAGGAAGCACCTCAGAAAACAGGCATAAAAGAGGAGACATTACACgtgagcagttttagtcttggtatcatgttcttggtgtgaggtttatggca #### Cep78_ID3976_10 --> 1 - 0 Original Alignment gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacaggAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt Alignment from CESAR gAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacaggAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt Alignment from Spaln_aa2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt Alignment from Spaln_nt2Genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt Alignment from Pairagon GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt Alignment from Exonerate_protein2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt Alignment from Exonerate_coding2genome GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt Alignment from GeneWise GAGTTCTTCATTAATCAAAACTCGTGATCTATCAAATCACCTGAAG tgccttattgtgtgcatgcattgtgattgtactttttttatcatccacagGAGTTCTTCATTAATCAAGACTCGTGATCTATCCAATCACCTGAAGgtaacttttaattacattttaatgtgaggaaccacaatgggagagggttt #### Cep78_ID3984_2 --> 2 - 0 Original Alignment gtGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGG------GTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtatctcttcttttattttcaggtAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTG---GTGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa Alignment from CESAR gtGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTG------CTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtatctcttcttttattttcaggtAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTG---GTGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa Alignment from Spaln_aa2Genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGG------GTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtatctcttcttttattttcagGTAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTG---GTGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa Alignment from Spaln_nt2Genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCT------AAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtatctcttcttttattttcagGTAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTGG---TGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa Alignment from Pairagon GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCT------AAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtatctcttcttttattttcagGTAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTGG---TGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa Alignment from Exonerate_protein2genome GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTA---AATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtatctcttcttttattttcagGTAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTGGTGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa Alignment from Exonerate_coding2genome ACAGTTCTGCGGTCCGGAGGTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGGGTGCTAAGAAATCTGGAGCTA---AATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtaTCTCTTCTTTTATTTTCAGGTAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTGGTGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa Alignment from GeneWise GTGCTGATACACACCGAATTTGTAGGAATCGAGTTCCTGCAGTGAGATCCAAAGACATAAGCTTCCAGTTATGTAAGGCTCTTAGAGGCTGCTTAAGTGTATCAGGG------GTGCTAAGAAATCTGGAGCTAAATGGGCTGATTCTGAGAGAGAGAGATTTGACTAGTCTAACAAAG tgcttgctgccttggcattctcaagcatgtatctcttcttttattttcagGTAGTGATACATACCGAGTCTGTAGAAATCAGGTTCCTGCAGTG---CCCAAAGACATTAGTTTTCAAGTATGTAAGGCTCTCAGAGGCTGCTTAAGTGTATCAGGGGTGCTGGTACTACGAAACTTG---GTGAATGGATTGATTCTAAGAGAGAGAGACTTGAGCAGTCTAATAAAAgtaagttatgtcaatctgtgatgcctagcctatttttaggctgttctcaa #### Cfl1_ID1060_2 --> 0 - 2 Original Alignment GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg aagtcacaacataattttgtaacaacatgttcacttctgtttttatgcagGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCtggtacatattacaactcacactctagtacttataccttgtatcctatatcc Alignment from CESAR GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCtg aagtcacaacataattttgtaacaacatgttcacttctgtttttatgcagGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCtggtacatattacaactcacactctagtacttataccttgtatcctatatcc Alignment from Spaln_aa2Genome ---ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG aagtcacaacataattttgtaacaacatgttcacttctgtttttATGCAGGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCTGgtacatattacaactcacactctagtacttataccttgtatcctatatcc Alignment from Spaln_nt2Genome GCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG aagtcacaacataattttgtaacaacatgttcacttctgtttttatgcagGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCTGgtacatattacaactcacactctagtacttataccttgtatcctatatcc Alignment from Pairagon ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG aagtcacaacataattttgtaacaacatgttcacttctgtttttatgCAGGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCTGgtacatattacaactcacactctagtacttataccttgtatcctatatcc Alignment from Exonerate_protein2genome ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG aagtcacaacataattttgtaacaacatgttcacttctgtttttatgCAGGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCTGgtacatattacaactcacactctagtacttataccttgtatcctatatcc Alignment from Exonerate_coding2genome ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG aagtcacaacataattttgtaacaacatgttcacttctgtttttatgCAGGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCTGgtacatattacaactcacactctagtacttataccttgtatcctatatcc Alignment from GeneWise ATGGCCTCTGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAATGACATGAAGGTTCGCAAGTCTTCAACACCAGAAGAAGTGAAGAAACGCAAGAAGGCGGTGCTCTTTTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGATCCTGGTAGGAGATGTGGGGCAGACTGTGGACGACCCCTACACCACTTTTGTCAAGATGCTGCCAGACAAGGACTGCCGCTATGCACTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTCATCTTCTG aagtcacaacataattttgtaacaacatgttcacttctgtttttatgCAGGCCTCTGGAGTAGCTGTCTCTGATGGTGTCATCAAAGTCTTCAATGATATGAAGGTATGCAAGTTTTCAACACCAGAGGAAGTGAAGAAACGCAAAAGGGTGGTACTGTTTTGCCTGAGCGAGGACAAGAAGAATATCCCCTTGGAGGAGGGTAAAGACATCTTGGTAGGAGATCTAGGGCAGACTGTAGATGATCCCTACACTACATTTGTCAAGATGCTGCCAGATGAGGATTGCCACTATGCACTCTATGATGCAACTTACGAGACCAAGGAGAGTAAGAAGGAGGACTTGGTTTTCATCTTCTGgtacatattacaactcacactctagtacttataccttgtatcctatatcc #### Chuk_ID8910_18 --> 1 - 0 Original Alignment cAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagcAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct Alignment from CESAR cAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagcAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct Alignment from Spaln_aa2Genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagCAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct Alignment from Spaln_nt2Genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagCAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct Alignment from Pairagon CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagCAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct Alignment from Exonerate_protein2genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagCAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct Alignment from Exonerate_coding2genome CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagCAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct Alignment from GeneWise CAAGTTGTTGGGCTGCAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATTGCCTGT gaggtagtggtcagaagctgcaagtaatctgaactctctgcctgttctagCAAGCTGTTGGGCTGTAAGCAAAAGATTATTGATCTACTCCCCAAGGTGGAAGTGGCCCTCAGTAACGTCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATTTGGCACCTCCTTAAAATCGCCTGTgtaggagaatagaataagctgtaaaggcagcattttttattgttacggct #### Chuk_ID8912_16 --> 1 - 1 Original Alignment gGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTg gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagaGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTggtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga Alignment from CESAR gGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTg gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagaGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTggtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga Alignment from Spaln_aa2Genome GGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTG gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagAGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTGgtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga Alignment from Spaln_nt2Genome GGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTG gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagAGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTGgtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga Alignment from Pairagon GGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTG gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagAGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTGgtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga Alignment from Exonerate_protein2genome GGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTG gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagAGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTGgtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga Alignment from Exonerate_coding2genome GGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTG gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagAGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTGgtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga Alignment from GeneWise GGAGCAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTG gattaaactacttaagagaaatgcaggggccctcgcgcacgcacccgcagAGAGCAGCATGCCATTGATCTCTATAAGCAGCTAAGACACAGACCTCCTGgtaaatcactctagttacagtggtaaaatgtttaggaccctcttaattga #### Chuk_ID8916_12 --> 2 - 2 Original Alignment taCAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAat tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagtaCAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAacgtaagtatattaaattttacagcatggcatcatggatcatagattattct Alignment from CESAR taCAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAat tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagtaCAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAacgtaagtatattaaattttacagcatggcatcatggatcatagattattct Alignment from Spaln_aa2Genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagTACAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAACgtaagtatattaaattttacagcatggcatcatggatcatagattattct Alignment from Spaln_nt2Genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagTACAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAACgtaagtatattaaattttacagcatggcatcatggatcatagattattct Alignment from Pairagon TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagTACAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAACgtaagtatattaaattttacagcatggcatcatggatcatagattattct Alignment from Exonerate_protein2genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagTACAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAACgtaagtatattaaattttacagcatggcatcatggatcatagattattct Alignment from Exonerate_coding2genome TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagTACAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAACgtaagtatattaaattttacagcatggcatcatggatcatagattattct Alignment from GeneWise TACAAGACAGCAAAATACAACTGCCAATTATACAGCTGCGGAAAGTATGGGCTGAAGCAGTGCACTACGTATCTGGGCTAAAGGAAGACTACAGCAGGCTCTTCCAGGGACAAAGAGCAGCAAT tctacttgttgttccccagttttttgaatgtgtttcaattttttctctagTACAAGACAGCAAAATACAATTGCCAATTATACAATTGCGGAAAGTATGGGCTGAAGCAGTGCACTATGTATCTGGGCTAAAGGAAGACTACAGTAGACTCTTCCAGGGGCAAAGAGCAGCAACgtaagtatattaaattttacagcatggcatcatggatcatagattattct #### Chuk_ID8919_9 --> 1 - 0 Original Alignment tTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagtCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct Alignment from CESAR tTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagtCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct Alignment from Spaln_aa2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct Alignment from Spaln_nt2Genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct Alignment from Pairagon TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct Alignment from Exonerate_protein2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct Alignment from Exonerate_coding2genome TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct Alignment from GeneWise TTTAATAGTAGAGCCAATGGAAAGCTGGCTCCAATTGATGCTGAATTGGGACCCACAGCAGAGAGGGGGACCTATTGATCTTACTTTGAAGCAGCCAAGATGTTTTGCATTAATGGATCACATTCTCAATTTAAAG aaagttgattggcacatggcattgttgtggcttctcgctctcctttgcagTCTAATAGTAGAACCAATGGAAAGCTGGCTCCAGTTGATGCTGAATTGGGAGCCACAGCAAAGAGGTGGGCCTATAGAGCTCACTTTGAAGCAGCCAAGGTGTTTTGCTTTAATGGAACACATCCTCAATTTAAAAgtaagttgctgatgggtagcatattaatgtatgtaggtttgcttgttgct #### Chuk_ID8920_8 --> 1 - 2 Original Alignment gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtaggCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt Alignment from CESAR gCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtaggCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt Alignment from Spaln_aa2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt Alignment from Spaln_nt2Genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt Alignment from Pairagon GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt Alignment from Exonerate_protein2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt Alignment from Exonerate_coding2genome GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt Alignment from GeneWise GCATGAGAAGATTAAGAAGAAAGATCCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgcatgcatcaggctgtggaattatttcttctttttgtagGCATGAGGAGATTAAGAAGAAAGATCCAAAGTGCATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagggatggtcagagtctttgggagtatgtcccttatctactcatagt #### Chuk_ID8923_5 --> 2 - 0 Original Alignment gaTCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcaggaGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga Alignment from CESAR gaTCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcaggaGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga Alignment from Spaln_aa2Genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcagGAGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga Alignment from Spaln_nt2Genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcagGAGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga Alignment from Pairagon GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcagGAGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga Alignment from Exonerate_protein2genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcagGAGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga Alignment from Exonerate_coding2genome GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcagGAGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga Alignment from GeneWise GATCTGGGATCCGATATCTGCATGAAAACAAAATTATACATCGAGATCTAAAACCTGAAAATATAGTTCTTCAAGATGTTGGTGGGAAG tgttctgcagccaccggtttaccgactaaactctgcgtctttggtcgcagGAGCTGGGATCCGATATCGGCATGCAAACAAAATTATACACCGAGATCTAAAACCAGAAAACATAGTTCTCCAAGATGTTGGTGGGAGAgtaacagaaggatggtgatgattttgtttacgcttattgtctctctagga #### Cnnm1_ID8732_4 --> 2 - 0 Original Alignment aaGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG cattgtcccccctgttggaatgcataacatttgatgcttctgttccacagaaGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa Alignment from CESAR aaGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG cattgtcccccctgttggaatgcataacatttgatgcttctgttccacagaaGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa Alignment from Spaln_aa2Genome AAGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG cattgtcccccctgttggaatgcataacatttgatgcttctgttccacagAAGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa Alignment from Spaln_nt2Genome AAGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG cattgtcccccctgttggaatgcataacatttgatgcttctgttccacagAAGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa Alignment from Pairagon --------------------------------------------CCACAGAAGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG CATTGTCCCCCCTGTTGGAATGCATAACATTTGATGCTTCTGTTCCACAGAAGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa Alignment from Exonerate_protein2genome AAGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG cattgtcccccctgttggaatgcataacatttgatgcttctgttccacagAAGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa Alignment from Exonerate_coding2genome AAGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG cattgtcccccctgttggaatgcataacatttgatgcttctgttccacagAAGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa Alignment from GeneWise AAGTGGAGCCCTTTAAGTCCCTGTACCTTTCGGAGAAGATCCTGCTCCGGCTTCTGAAACATCCCAACGTGATCCAGGAGCTTAAGTTTGATGAGAGGAACAAGAAAGCCCCAGAACACTACCTCTACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAG cattgtcccccctgttggaatgcataacatttgatgcttctgttccacagAAGTGGAGCCCTTTCAGTCCCTATACCTTTCAGAGAAGATCCTGCTCCGGCTTCTGAAACAACCCAATGTGATACAGGAGCTTAAGTTTGATGAGAGAAACAAGAAAGCCCCAGAACACTACCTATACCAGCGCAACCGCCCGGTGGACTATTTTGTGCTGCTCTTACAGgtatgcgttgaggtcagacaacttggagaaggtccccaaggtgaatagaa #### Cnnm2_ID10027_5 --> 0 - 1 Original Alignment GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAggtaagggtttctggcatctctccacactttataataaagggcctgatagc Alignment from CESAR GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAg tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAggtaagggtttctggcatctctccacactttataataaagggcctgatagc Alignment from Spaln_aa2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAGgtaagggtttctggcatctctccacactttataataaagggcctgatagc Alignment from Spaln_nt2Genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAGgtaagggtttctggcatctctccacactttataataaagggcctgatagc Alignment from Pairagon GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAGgtaagggtttctggcatctctccacactttataataaagggcctgatagc Alignment from Exonerate_protein2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAGgtaagggtttctggcatctctccacactttataataaagggcctgatagc Alignment from Exonerate_coding2genome GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAGgtaagggtttctggcatctctccacactttataataaagggcctgatagc Alignment from GeneWise GGGAAGGTGGAGGTGGAAGCTGGGAAAGAAGGCATGAAGTTTGAAGCCAGCGCTTTCTCCTACTATGGTGTGATGGCCCTCACAGCCTCTCCAG tacctcaccttttgtacttgtatgttgaattgtatgtatttctttttcagGGAAAGGCAGAGGTTGTAGCTGAGAAAGAGGGCATGAAGTTTGAGGCCAGTGCCTTCTCCTATCATGGTGTTATGGCACTCACTGCACCTCCAGgtaagggtttctggcatctctccacactttataataaagggcctgatagc #### Cnnm2_ID10028_6 --> 2 - 1 Original Alignment ttCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAg agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagttCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAggtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc Alignment from CESAR ttCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAg agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagttCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAggtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc Alignment from Spaln_aa2Genome TTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAG agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagTTCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAGgtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc Alignment from Spaln_nt2Genome TTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAG agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagTTCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAGgtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc Alignment from Pairagon TTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAG agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagTTCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAGgtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc Alignment from Exonerate_protein2genome TTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAG agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagTTCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAGgtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc Alignment from Exonerate_coding2genome TTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAG agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagTTCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAGgtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc Alignment from GeneWise TTCCTTTGTCCCTGTCTCGCACCTTTGTTGTCAGCAGGACAGAGGTGTTAGCTGCGGGCTCTCCAG agattggtatcagttggatgtatcttaatttcttttgttctaaaccccagTTCCTTTGTCCCTGCCTCGCACCTTTGTTGTCAGCAGGACCGAGGTTTTAGCTGCGGGCTCTCCAGgtaggtcttttctaacccagtatttgctcccacctgggcaacagatgggc #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctaggaAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctaggaAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAagtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGC---------ATCAGTGGAGAAGGGTCGCTACTGTCTGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTC---------TGGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagattgggctcagtgactctaagtaacaatgtgtcctctcttctagGAAACGATGTGTGGCAAGACCTGCGTCAAAATCTAGTAGGTCCTCCAAGTCCTTCAGGGCCATTAGGCATCAGTGGAGAAGGGTCGCTACTGTCT---------GGAGAGCTGAGCAAGCACATTCTCAACTATATGTCAAgtaagtaggcaggagtactcacctcactgaggttgcgggggttgcctctt #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagctTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGAcgtgagtaccttcaaataggcagtactacattcttttacctactactgatc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagctTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGAcgtgagtaccttcaaataggcagtactacattcttttacctactactgatc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagCTTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaccttcaaataggcagtactacattcttttacctactactgatc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagCTTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaccttcaaataggcagtactacattcttttacctactactgatc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagCTTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaccttcaaataggcagtactacattcttttacctactactgatc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagCTTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaccttcaaataggcagtactacattcttttacctactactgatc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagCTTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaccttcaaataggcagtactacattcttttacctactactgatc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagtgctacacgtgcacacatcttgcttctgtccacagCTTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCATCAGAGGATATCTTGGCCATGCTACGACgtgagtaccttcaaataggcagtactacattcttttacctactactgatc #### Col17a1_ID10286_36 --> 2 - 1 Original Alignment gcCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCc ataactctagtggcacaactggcatctttcttaatgacatattttcctaggtCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGcgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact Alignment from CESAR gcCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCc ataactctagtggcacaactggcatctttcttaatgacatattttcctaggtCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGcgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact Alignment from Spaln_aa2Genome GCCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCC ataactctagtggcacaactggcatctttcttaatgacatattttcctagGTCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGCgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact Alignment from Spaln_nt2Genome GCCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCC ataactctagtggcacaactggcatctttcttaatgacatattttcctagGTCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGCgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact Alignment from Pairagon GCCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCC ataactctagtggcacaactggcatctttcttaatgacatattttcctagGTCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGCgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact Alignment from Exonerate_protein2genome GCCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCC ataactctagtggcacaactggcatctttcttaatgacatattttcctagGTCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGCgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact Alignment from Exonerate_coding2genome GCCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCC ataactctagtggcacaactggcatctttcttaatgacatattttcctagGTCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGCgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact Alignment from GeneWise GCCCACGAGGGGAGCCAGGACTTGCTGGTGACTCATTCCTAAGCAGTGGCAGCTCCATCTCTGAGGTCCTCTCTGCCC ataactctagtggcacaactggcatctttcttaatgacatattttcctagGTCCACAAGATGAGCCGGGGCTTTCTGGAGATTCATTCCTAAGCAGTGGTAGCTCCATCTCTGATGTCCTCACTTCGCgtgagatctgtcagtcagcaggaatcatttacacattataacaggctact #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcaggaGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcaggaGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from GeneWise GAGATCCTGGCATGGAAGGACCCATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATAGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc #### Col17a1_ID10303_19 --> 2 - 1 Original Alignment gtGACATGGGGAGTCAAGGACCTAAAg tctttctttaataaagtgatactctgaacgtgccctccccccttctctaggaGATATGGGGAGTCAGGGACCTAAGggtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag Alignment from CESAR gtGACATGGGGAGTCAAGGACCTAAAg tctttctttaataaagtgatactctgaacgtgccctccccccttctctaggaGATATGGGGAGTCAGGGACCTAAGggtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag Alignment from Spaln_aa2Genome GTGACATGGGGAGTCAAGGACCTAAAG tctttctttaataaagtgatactctgaacgtgccctccccccttctctagGAGATATGGGGAGTCAGGGACCTAAGGgtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag Alignment from Spaln_nt2Genome GTGACATGGGGAGTCAAGGACCTAAAG tctttctttaataaagtgatactctgaacgtgccctccccccttctctagGAGATATGGGGAGTCAGGGACCTAAGGgtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag Alignment from Pairagon GTGACATGGGGAGTCAAGGACCTAAAG tctttctttaataaagtgatactctgaacgtgccctccccccttctctagGAGATATGGGGAGTCAGGGACCTAAGGgtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag Alignment from Exonerate_protein2genome GTGACATGGGGAGTCAAGGACCTAAAG tctttctttaataaagtgatactctgaacgtgccctccccccttctctagGAGATATGGGGAGTCAGGGACCTAAGGgtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag Alignment from Exonerate_coding2genome GTGACATGGGGAGTCAAGGACCTAAAG tctttctttaataaagtgatactctgaacgtgccctccccccttctctagGAGATATGGGGAGTCAGGGACCTAAGGgtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag Alignment from GeneWise tctttctttaataaagtgatactctgaacgtgccctccccccttctctaggagatatggggagtcagggacctaagggtgagcattgcaaaaagtgataggaggactgcagatgtgctgattgatag #### Col17a1_ID10306_16 --> 2 - 1 Original Alignment aaAACCATGGCTACGACCGAGGT---GGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGG---TGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGg taccccggcttggcaaaggattacatcccctgtcttttctacttttccagaaAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTggtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa Alignment from CESAR aaAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGGTGG---AAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGg taccccggcttggcaaaggattacatcccctgtcttttctacttttccagaaAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTggtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa Alignment from Spaln_aa2Genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG taccccggcttggcaaaggattacatcccctgtcttttctacttttccagAAAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTGgtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa Alignment from Spaln_nt2Genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGG---TGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG taccccggcttggcaaaggattacatcccctgtcttttctacttttccagAAAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTGgtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa Alignment from Pairagon AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG taccccggcttggcaaaggattacatcccctgtcttttctacttttccagAAAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTGgtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa Alignment from Exonerate_protein2genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG taccccggcttggcaaaggattacatcccctgtcttttctacttttccagAAAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTGgtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa Alignment from Exonerate_coding2genome AAAACCATGGCTACGACCGA---GGTGGCGGTGGTGGCAGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGC---TGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG taccccggcttggcaaaggattacatcccctgtcttttctacttttccagAAAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTGgtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa Alignment from GeneWise AAAACCATGGCTACGACCGAGGTGGCGGTGGTGGC---AGAGGCAAAGGCGGAGGTGCTGGTGGTGGCGGTGGTGGCGGTGGCGCCAGTGGCGGTGGAGGAGCATGGGGGGCTGCACCAGCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGGTGG---AAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTGCTGGGTCTGCTCTTCGGCCTCATTGCTCTGG taccccggcttggcaaaggattacatcccctgtcttttctacttttccagAAAATCATGGCTATGACCGAGGTGGTGGCGGTGGTGGGAGGGGCAAAGCTGGAGGTGCTGGTGGTGGAAGTGGAGGTAGTGGTGCCAGTGGTGGTGGAGGGGCTTGGGGGGCTGCTACAGCCTGGTGCCCTTGTGGCTCCTGCTGCAGCTGGTGGTGGAAATGGCTGCTTGGCTTACTGCTCACCTGGCTGCTGTTGGTGGGCCTACTTTTTGGTCTAATTGCACTTGgtaaggatcttagtacatccctgagggcatgcaggttagaaccttctaaa #### Col17a1_ID10309_13 --> 2 - 1 Original Alignment ccTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAa ttttttatagagaaccctctttccaccccagacctttctgtctcccttagccTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGCA---AAAGAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGagtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat Alignment from CESAR ccTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAa ttttttatagagaaccctctttccaccccagacctttctgtctcccttagccTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGCA---AAAGAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGagtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat Alignment from Spaln_aa2Genome CCTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAA ttttttatagagaaccctctttccaccccagacctttctgtctcccttagCCTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGCAAAA---GAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGAgtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat Alignment from Spaln_nt2Genome CCTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAA ttttttatagagaaccctctttccaccccagacctttctgtctcccttagCCTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGCA---AAAGAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGAgtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat Alignment from Pairagon CCTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAA ttttttatagagaaccctctttccaccccagacctttctgtctcccttagCCTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGC---AAAAGAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGAgtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat Alignment from Exonerate_protein2genome CCTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAA ttttttatagagaaccctctttccaccccagacctttctgtctcccttagCCTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGCA---AAAGAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGAgtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat Alignment from Exonerate_coding2genome ACCTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAA ttttttatagagaaccctctttccaccccagacctttctgtctcccttaGCCTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGCA---AAAGAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGAgtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat Alignment from GeneWise CCTGCACCACCAGTGTCCAGAGTGACGACCTCTTGCATAAAGACTGCAAGTTCCTGATTCTGGAGAAAGACAACACACCAGCTAAGAAAGAGATGGAACTCTTGATCATGACCAAGGACAGTGGGAAGGTCTTCACTGCCTCCCCTGCCACCATCTCTTCAA ttttttatagagaaccctctttccaccccagacctttctgtctcccttagCCTGTGCCACCAGTGCTCAGAGTGATGACCTCCTGCATAAAGACTGCAAATCTTTGATACTGGAGAAGGACAATACACCAGCAAAA---GAAATGGAGCTCTTGATCATGACCAAGGATAGTGGTAGGGTTTTCTCCGCCTCTCCTGCTACCGTCTCCCTGAgtacagtgtggggtgggttcaatgtgctccagattttgggctctagatat #### Col17a1_ID10316_6 --> 2 - 1 Original Alignment ccTCTTCTTCAACCAGAGGACGAAGCCAAACACGAg ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagtcTCTTCTTCAACTAGAGGACAAAGCCAAACTCGAggtactggctatctttggttttggtttgagccgactaactcactgagggca Alignment from CESAR ccTCTTCTTCAACCAGAGGACGAAGCCAAACACGAg ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagtcTCTTCTTCAACTAGAGGACAAAGCCAAACTCGAggtactggctatctttggttttggtttgagccgactaactcactgagggca Alignment from Spaln_aa2Genome CCTCTTCTTCAACCAGAGGACGAAGCCAAACACGAG ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagTCTCTTCTTCAACTAGAGGACAAAGCCAAACTCGAGgtactggctatctttggttttggtttgagccgactaactcactgagggca Alignment from Spaln_nt2Genome CCTCTTCTTCAACCAGAGGACGAAGCCAAACACGAG ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagTCTCTTCTTCAACTAGAGGACAAAGCCAAACTCGAGgtactggctatctttggttttggtttgagccgactaactcactgagggca Alignment from Pairagon CCTCTTCTTCAACCAGAGGACGAAGCCAAACACGAG ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagTCTCTTCTTCAACTAGAGGACAAAGCCAAACTCGAGgtactggctatctttggttttggtttgagccgactaactcactgagggca Alignment from Exonerate_protein2genome CCTCTTCTTCAACCAGAGGACGAAGCCAAACACGAG ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagTCTCTTCTTCAACTAGAGGACAAAGCCAAACTCGAGgtactggctatctttggttttggtttgagccgactaactcactgagggca Alignment from Exonerate_coding2genome ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagtctcttcttcaactagaggacaaagccaaactcgaggtactggctatctttggttttggtttgagccgactaactcactgagggca Alignment from GeneWise ccagggcaattagactttagacaaaccattgcatttgtttctgtttcaagtctcttcttcaactagaggacaaagccaaactcgaggtactggctatctttggttttggtttgagccgactaactcactgagggca #### Col17a1_ID10320_2 --> 2 - 1 Original Alignment ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagttGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGagtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga Alignment from CESAR ttGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAa gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagttGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGagtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga Alignment from Spaln_aa2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga Alignment from Spaln_nt2Genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga Alignment from Pairagon TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga Alignment from Exonerate_protein2genome TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga Alignment from Exonerate_coding2genome gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagttgtcacggaaacagtaacaacaagacttacatccctaccgccgagtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga Alignment from GeneWise TTGTCACGGAAACAGTAACGACAAGACTTACATCCCTACCGCCAA gctgtatatgggtgtactaggtcaaggtctctctctctctttaaatgtagTTGTCACGGAAACAGTAACAACAAGACTTACATCCCTACCGCCGAgtgagcctgaggctgcttacaactaatcaagaacataacagggtccctga #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gtagatgagtcaaaaagtcttaggttagctgttctttttgcttcctgcagACTGGCCACGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGAGCAGAAGATTGTACTGTTATGgtgagcaaaaacctgttcaggttttattgtatcaaagtcaagtaacttct #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt #### Cpeb3_ID7267_9 --> 2 - 0 Original Alignment ttGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagttGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac Alignment from CESAR ttGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagttGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac Alignment from Spaln_aa2Genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac Alignment from Spaln_nt2Genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac Alignment from Pairagon TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac Alignment from Exonerate_protein2genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac Alignment from Exonerate_coding2genome TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac Alignment from GeneWise TTGAACTGGCAATGATAATGGACCGTTTGTACGGTGGTGTTTGCTATGCTGGCATTGACACAGACCCAGAGCTGAAGTACCCGAAAGGTGCTGGGCGTGTTGCGTTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCGCGCTTTGTGCAACTTCAACACAACGACATTGACAAACGG catatacaaatcccctctttgcagatgatgtctccattacacttttttagTTGAACTTGCAATGATAATGGGCCGTTTGTATGGTGGTGTTTGCCATGCTGGGATTGACACAGACCCAGAGCTAAAGTACCCAAAAGGCACTGGGCGTGTTGCATTCTCCAATCAGCAGAGCTACATTGCAGCCATCAGTGCACGCTTTGTGCAGCTTCAACACAATGACACTGACAAACAAgtgagtggtctctccctggggcaatacgcagcatacttttgcagacatac #### Cpeb3_ID7273_7 --> 2 - 0 Original Alignment gcTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccataggcTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca Alignment from CESAR gcTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccataggcTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca Alignment from Spaln_aa2Genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccatagGCTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca Alignment from Spaln_nt2Genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccatagGCTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca Alignment from Pairagon GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccatagGCTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca Alignment from Exonerate_protein2genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccatagGCTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca Alignment from Exonerate_coding2genome GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccatagGCTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca Alignment from GeneWise GCTATGCTTTCCTGCTGTTCCAGGAGGAGAGCTCAGTGCAAGCTCTGATAGATGCCTGCCTGGAGGAGGATGGGAAACTGTACCTGTGTGTGTCCAGCCCAACCATCAAGGATAAACCG atatcctacagctttcaggagtacttttttctttctttttctatccatagGCTATGCTTTTTTGTTGTTCCAAGGGGAGAGCTCAGTGCAAGCTTTGATAGATGCCTGCCTGGAGGAGGATGGGAAGCTGTACCTGTGTGTTTCCAGCCCAACCACCAAGGATAAACCAgtaaaagatgcagcttccccccacccaccttcttcaagattgttataaca #### Cpeb3_ID7279_3 --> 2 - 1 Original Alignment gaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACa gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccaggaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACagtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc Alignment from CESAR gaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACa gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccaggaCGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACagtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc Alignment from Spaln_aa2Genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc Alignment from Spaln_nt2Genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc Alignment from Pairagon GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc Alignment from Exonerate_protein2genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc Alignment from Exonerate_coding2genome GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACA gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc Alignment from GeneWise GACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAAC- gaaataattatgttgtgctgtagccaattcttccctttcttgtcacccagGACGCATGGGAATAAATTTCCACCATCCAGGAACAGATAACATTATGGCACTTAACAgtaagtgttaataaagacacacaatatatgattgtcaggcttctgctgtc #### Cpeb3_ID7283_2 --> 0 - 1 Original Alignment GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAg catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAggtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga Alignment from CESAR GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAg catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAggtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga Alignment from Spaln_aa2Genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga Alignment from Spaln_nt2Genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga Alignment from Pairagon GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga Alignment from Exonerate_protein2genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga Alignment from Exonerate_coding2genome GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga Alignment from GeneWise GACCGGAGTAGGCCCTATGACACTTTTAACTTGCACTCCTTGGAGAACTCCTTAATGGATATGATAAGGACTGACCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGTGGCCCACCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAG catgaacatgaattttctggcatcccaatgacagctttttttctccttagGGACAGAGTAGGCCCTATGATACTTTTAACCTGCACTGCTTGGAGAATTCTCTAATGGACATGATAAGGACTGACCATGAGCCACTAAAGGGTAAACACTACCCTCCAGGTGGACCTGCTATGAGTTTTGCTGATATAATGTGGAGGAACCATTTTGCAGgtaagtagggttcatgtgttcatctctgttggcaatccccaaacttgtga #### Cpn1_ID8876_4 --> 0 - 0 Original Alignment GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg Alignment from CESAR GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg Alignment from Spaln_aa2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg Alignment from Spaln_nt2Genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg Alignment from Pairagon GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg Alignment from Exonerate_protein2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg Alignment from Exonerate_coding2genome GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg Alignment from GeneWise GTGGAACCAGAGACCCGGGCGGTGATCCAGTGGATTCGCTCCTTGAACTTCGTTCTCTCAGCCAATATGCACGGCGGGGCTGTGGTGGCCAATTACCCATATGACAAGTCACTTGAGCATAGGTTTCGAGGTCCCCATCGCACCTCCAATTCCCCGACACCTGATGACGAGCTCTTCCAGACG ggcaatgcctacatcagcagctatcatcttcaacaccttctatctcctagGTGGAACCAGAAACCCGGGCTGTCATTCAATGGATACGCTCTTTGAACTCTGTCCTCTCATCCAATATGCATGGTGGTGCTGTGGTGGCAAATTATCCATATGATAAGTCACTTGACCGTAGGTTCCAAGGTCGTCATCGCACCTCTAATTCCCCCACACCTGATGATGAACTCTTCCAAACAgtaataaaattagtgctgcgcagaggagggggtttggcctgggggttggg #### Cpn1_ID8878_2 --> 2 - 0 Original Alignment tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagtgGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc Alignment from CESAR tgGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagtgGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc Alignment from Spaln_aa2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc Alignment from Spaln_nt2Genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc Alignment from Pairagon TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc Alignment from Exonerate_protein2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc Alignment from Exonerate_coding2genome TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc Alignment from GeneWise TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG tatgtatgacatctaaatgcccttcagatctctgccatctctgcctgcagTGGAACCAGAAGTCAAGTATGTGGGAAACATGCATGGGAATAAAGTGCTAGGGCACAGGCTGCTTCTGCAGCTATCTGAATTCCTCTGCAAGGAGTTTCAGAACCGAAACAAGCGTATTCTGCGTCTAACCCAGGACACACGAATTCTCATCTTTCCTTCTATGAACCCTGACGGTTATGGGGTAGCAACTGCCCTGgtgagtattggaggttagatagatgagcccagaacctgtgaatagcattc #### Cpt1a_ID35_7 --> 0 - 0 Original Alignment GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga Alignment from CESAR GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga Alignment from Spaln_aa2Genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga Alignment from Spaln_nt2Genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga Alignment from Pairagon GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga Alignment from Exonerate_protein2genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga Alignment from Exonerate_coding2genome GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga Alignment from GeneWise GAGATGCTCTACATCACCCCAACCCATATTCAGGCAGCGAGAGCTGGCAACACCATCCACGCCATACTGCTGTATCGTCGCACGGTAGACCGTGAGGAACTCAAACCT caggctgctacataacctgatcaacattccgattatttttgtgtctccagGAAATGCTGTACATAACCCCAACCCATATCCAGGCAGCAAGAGCTGGTAATACCATTCATATAGTACTGCTGTATCGGTGTACAGTTGAATGTGAGGAGCTCAAACCTgtaagataattgttctttaagacaacccctttgaaaactagcaggctcga #### Cpt1a_ID36_8 --> 0 - 1 Original Alignment ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAg ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAggtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta Alignment from CESAR ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAg ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAggtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta Alignment from Spaln_aa2Genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAGgtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta Alignment from Spaln_nt2Genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAGgtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta Alignment from Pairagon ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAGgtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta Alignment from Exonerate_protein2genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAGgtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta Alignment from Exonerate_coding2genome ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAGgtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta Alignment from GeneWise ATTCGTCTTCTGGGATCTACAATTCCCCTCTGCTCTGCTCAGTGGGAGCGACTCTTCAATACTTCCCGCATCCCTGGGGAGGAGACAG ctttgcttgggatttctgattttctgcacagcaatacctctgtgtttcagATTCGTCTTCTGGGATCTACGATTCCCCTCTGTTCTGCTCAGTGGGAGCGACTCTCCAACACTCCCCGCACTCCAGGTGAGGAAACAGgtaggtattgattgtcagaatttcaagtcagaatcaacagtggtagggta #### Cpt1a_ID41_13 --> 0 - 0 Original Alignment TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG acctcttagctgtgcatccctactccacatattatggtatttcttttcagTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc Alignment from CESAR TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG acctcttagctgtgcatccctactccacatattatggtatttcttttcagTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc Alignment from Spaln_aa2Genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG acctcttagctgtgcatccctactccacatattatggtatttcttttcagTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc Alignment from Spaln_nt2Genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG acctcttagctgtgcatccctactccacatattatggtatttcttttcagTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc Alignment from Pairagon TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG acctcttagctgtgcatccctactccacatattatggtatttcttttcagTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc Alignment from Exonerate_protein2genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG acctcttagctgtgcatccctactccacatattatggtatttcttttcagTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc Alignment from Exonerate_coding2genome TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG acctcttagctgtgcatccctactccacatattatggtatttcttttcagTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc Alignment from GeneWise --------------------------------------------------TGCCAGGAGGTCATAGAGACATCCCTAAGCAGTGCCAGTTTTTTGGCAAATGATGTGGACCTGCATTCCTTCCCATTTGACACCTTTGGCAAAGGCTTGATCAAGAAGTGCCGGACGAGTCCCGATGCCTTCATCCAGCTGGCACTGCAGCTCGCACATTACAAG ACCTCTTAGCTGTGCATCCCTACTCCACATATTATGGTATTTCTTTTCAGTGCCAGGGAGTCATAGAAACATCCCTAAGCAGTGCAAGTTTTTTGGCAAATGATGTAGACCTGCATTCCTTCCATTTTGACACCTTTGGCAAAGGCTTGATCAAGAAATGCCAGACCAGCCCTGATGCCTTCATCCAGCTTGCACTGCAATTGGCACATTACAAGgtactggaggcactctctgctgaaaaaatggtctcagctacttgaccttc #### Cpt1a_ID45_17 --> 0 - 0 Original Alignment GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca Alignment from CESAR GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca Alignment from Spaln_aa2Genome GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca Alignment from Spaln_nt2Genome GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca Alignment from Pairagon GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca Alignment from Exonerate_protein2genome GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca Alignment from Exonerate_coding2genome GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca Alignment from GeneWise GTTGCTGATGACGGCTATGGTGTTTCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCCAAGTTCTCTAGCCCTGAGACA taaactggatagatatactggtattagttttccctcttccttcccaccagGTGGCTGATGATGGCTATGGACTATCCTACATTATTGTGGGAGAGAATTTCATCCACTTCCATATTTCTTCTAAGTTCTCAAGTCCTGAAACGgtaagaacattacacttgtcattctagttgtcaacatttggtaagggtca #### Crtac1_ID8462_10 --> 2 - 0 Original Alignment ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagggGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from CESAR ggGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagggGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Spaln_aa2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Spaln_nt2Genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Pairagon GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Exonerate_protein2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from Exonerate_coding2genome GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag Alignment from GeneWise GGGGCGTAGTGACCGACTTCGATGGTGATGGGATGCTGGATCTCATCTTGTCACATGGAGAGTCCATGGCTCAGCCACTGTCTGTCTTCCGGGGAAATCAG cctccctggcccgaatagttacagcctgttctctctgtgtgtctcccaagGGGGTGTAGTGACTGATTTTGATGGGGATGGGATGTTGGATCTGATCTTGTCACATGGAAGGTCCATGGCTCAGCCCTTGTCTATTTTCCGTGGGAATCAGgtgggaaacaacatagtgtgtttgagctaagtgacccccccgtatgatag #### Crtac1_ID8481_4 --> 2 - 0 Original Alignment gtGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattaggaGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct Alignment from CESAR gtGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattaggaGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct Alignment from Spaln_aa2Genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattagGAGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct Alignment from Spaln_nt2Genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattagGAGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct Alignment from Pairagon GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattagGAGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct Alignment from Exonerate_protein2genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattagGAGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct Alignment from Exonerate_coding2genome GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattagGAGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct Alignment from GeneWise GTGTGGCCACATACACAGACAAGTTGTTCAAATTCCGAAATAACCGGTGGGAAGACATCCTGAGTGATGACGTCAATGTGGCCCGTGGAGTGGCCAGCCTCTTTGCGGGACGCTCCGTGGCCTGTGTAGACAGGACG taagaggaacctcttgccttgccgcccccctgtgctttctttcccattagGAGTAGCCACATATACAGACAAGTTGTTCAAGTTCCGAAATATACGATGGGAAGACATCCTAAGTGATGATGTCAATGTGGCCCGTCGAGTGGCCAGCCTGTTTGCTGGACGCTCCGTGGCATGTGTAGACAGAACAgtaaggaaaggcctacaggggcatggggggaatctgagggtatacactct #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGggtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGggtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Exonerate_coding2genome GGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga #### Csf2ra_ID13436_4 --> 2 - 2 Original Alignment gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac acagaagtagtactggattgcacccaagaacaattttcttgttcccacaggcACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGAGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from CESAR gcGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCac acagaagtagtactggattgcacccaagaacaattttcttgttcccacaggcACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGAGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAacgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Spaln_aa2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGAGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Spaln_nt2Genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGAGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Pairagon GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGAGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Exonerate_protein2genome GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGAGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from Exonerate_coding2genome acagaagtagtactggattgcacccaagaacaattttcttgttcccacaggcactgcaggcacaggggcagagaatctgatctgtgagattcgagcttcacgctttctctcctgtgcttggcgagaggggccagctgcaccggcagatgtccagcactcactgcaggtccttaactcaacgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt Alignment from GeneWise GCGCGGCGGGCTCGGGGGCGGAGAACCTGACCTGCGAGATCCGAGCCGCGCGCTTCCTTTCCTGCGCGTGGCGGGAGGGGCCAGCGGCGCCCGCGGACGTCCGGTACTCGCTGCGAGTCCTCAACTCCAC acagaagtagtactggattgcacccaagaacaattttcttgttcccacagGCACTGCAGGCACAGGGGCAGAGAATCTGATCTGTGAGATTCGAGCTTCACGCTTTCTCTCCTGTGCTTGGCGAGAGGGGCCAGCTGCACCGGCAGATGTCCAGCACTCACTGCAGGTCCTTAACTCAACgtgagttgtaaacccccagctgtctgtccacagtgcattgctactatttt #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagagTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagagTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGACAAGGATCCCCTGCCCCAG atactgaactaaaatctggctatagatactctgtcgtgctcatgttccagAGTTTCGAAATGTCACCCTTGGCTCACTCCTACCACTGCTTGACAAAGATCCCCTGCCCCAGgtaaggagaaaatgttacatggggagaaagcacatctttattcctggtac #### Ctsf_ID678_6 --> 2 - 1 Original Alignment aaGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAg caaacatatatctctaggcactgatctctttgctcacaccatcccttcagaaGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAggtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg Alignment from CESAR aaGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAg caaacatatatctctaggcactgatctctttgctcacaccatcccttcagaaGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAggtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg Alignment from Spaln_aa2Genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG caaacatatatctctaggcactgatctctttgctcacaccatcccttcagAAGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAGgtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg Alignment from Spaln_nt2Genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG caaacatatatctctaggcactgatctctttgctcacaccatcccttcagAAGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAGgtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg Alignment from Pairagon AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG caaacatatatctctaggcactgatctctttgctcacaccatcccttcagAAGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAGgtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg Alignment from Exonerate_protein2genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG caaacatatatctctaggcactgatctctttgctcacaccatcccttcagAAGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAGgtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg Alignment from Exonerate_coding2genome AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG caaacatatatctctaggcactgatctctttgctcacaccatcccttcagAAGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAGgtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg Alignment from GeneWise AAGCCCAGTGGCGATTGACTGTCTTTGCAAGAAATATGATACGAGCACAGAAGATTCAGGCCCTGGACCGCGGCACAGCTCAGTATGGGATCACCAAGTTCAGTGACCTCACAG caaacatatatctctaggcactgatctctttgctcacaccatcccttcagAAGCCCACTGGCGGCTGACTGTTTTTGCAAGAAATATGATACGTGCTCAGATGATTCAGGCCCTGGACTGTGGCTCAGCTCAGTATAGCATCACGAAGTTCCGTGGCCTCACAGgtaagtacatcaactaaagctgacattaacaatgagattggctggtatgg #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagagGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAACCAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagagGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAA------GTGAAGAAC----------------------------------------------------- gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAGTAATTGTAACTTGAAATTGGGAGAGGGTGCAAGGCCTATAGAGCTAACC Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---TTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGggtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---TTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGggtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Spaln_aa2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Spaln_nt2Genome AACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGC---AGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTT---GATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Pairagon ----------------------------------------------CCAGGGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG CCTCAGAGAACCCTAATAGAGCACTCTGCCCCTACCCCCCCGTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGT---TGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Exonerate_protein2genome TGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Exonerate_coding2genome TGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAG--------------------------------------------------- cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGTTGATC---CGAGGAACTCTGCTTTCCCTGTCAGAACAGGGTAAGTATCCTGATCCATTCTGTTTTTATCAGACAAACCCCTCCATAGGG #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagagCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATagtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagagCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATagtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagAGCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagAGCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagAGCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagAGCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagAGCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt Alignment from GeneWise AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtctctgcctgcatgtggcaattaggcactgctctttctttcccagAGCTTTTGGACTGTAAGCACTGTGGCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtaagctactatgcctatcaggagatgaagtgagtgcttggcatgggagt #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgcacttatctaacccaaggacagtactgcaattgtatctttcagAGAGGTTGCAACCATTTCCCTGGCCGATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgcacttatctaacccaaggacagtactgcaattgtatctttcagAGAGGTTGCAACCATTTCCCTGGCCGATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca Alignment from Spaln_aa2Genome -- -AAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CAgtttgcacttatctaacccaaggacagtactgcaattgtatctttcagagaggttgcaaccatttccctggccgatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca Alignment from Spaln_nt2Genome GGAAG--CTGCAA-- ---ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgcacttatctaacccaagGACAGTACTGCAATTgtatctttcagagaggttgcaaccatttccctggccgatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgcacttatctaacccaaggacagtactgcaattgtatctttcagAGAGGTTGCAACCATTTCCCTGGCCGATGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgcacttatctaacccaaggacagtactgcaattgtatctttcagagaggttgcaaccatttccctggccgaTGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgcacttatctaacccaaggacagtactgcaattgtatctttcagagaggttgcaaccatttccctggccgaTGGATCAGTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca Alignment from GeneWise TG CAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG CAgtttgcacttatctaacccaaggacagtactgcaattgtatctttcagagaggttgcaaccatttccctggccgatggatcagTGTATGCTGTTGGGCCATGGCAGCTGCTGACAACATCCAGGCTTTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaagtgggattaccatgtggttagctgtgttctctactcttacgtacca #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactctttcgccaccctgctggtacctcgttcatctctctctcaatagagGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtaagggccctagctcagtttgcacttatctaacccaaggacactgccct Alignment from CESAR agGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactctttcgccaccctgctggtacctcgttcatctctctctcaatagagGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtaagggccctagctcagtttgcacttatctaacccaaggacagtactgc Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGCTGC-------- accactctttcgccaccctgctggtacctcgttcatctctctctcaatagAGGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGGTAAGGGCCCTAGCTCAgtttgcacttatctaacccaaggacactgccct Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGAAGC accactctttcgccaccctgctggtacctcgttcatctctctctcaatagAGGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGGTAAGGgccctagctcagtttgcacttatctaacccaaggacactgccct Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactctttcgccaccctgctggtacctcgttcatctctctctcaatagAGGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtaagggccctagctcagtttgcacttatctaacccaaggacactgccct Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactctttcgccaccctgctggtacctcgttcatctctctctcaatagAGGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtaagggccctagctcagtttgcacttatctaacccaaggacactgccct Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactctttcgccaccctgctggtacctcgttcatctctctctcaatagAGGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGgtaagggccctagctcagtttgcacttatctaacccaaggacactgccct Alignment from GeneWise AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAGGGA---------AGCTG accactctttcgccaccctgctggtacctcgttcatctctctctcaatagAGGAGGAGTTTGGCCAATTATATGGGCAGGAAAGGTCACCGGAAAGGACCCCTAATATGACCAAAAAGGTGGAGTCAAACACATGGGGGGAGTCTGTACCTCGAACCTGTGATTGGTGTAAAGCAAAGAACATCATCTCATCAATCAAGAATCAGGTAAGGGCCCTAGCTCAgtttgcacttatctaacccaaggacactgccct #### Ctsw_ID1024_2 --> 0 - 1 Original Alignment GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAggtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa Alignment from CESAR GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAg tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAggtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa Alignment from Spaln_aa2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAGgtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa Alignment from Spaln_nt2Genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAGgtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa Alignment from Pairagon GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAGgtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa Alignment from Exonerate_protein2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAGgtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa Alignment from Exonerate_coding2genome GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAGgtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa Alignment from GeneWise GATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTTCAACCGGAGTTACTGGAACCCAGCAG tttagctacgacagataagaaccaagaacgccttgctgcttgtcttatagGATACAGGTCCACGACCACTTGAGGTGAAGGAAGTCTTTAGGCTGTTTCAGATCCGGCTCAACCAGAGCTACTGGAACCCAGCAGgtgagcacaggcacagatgtttctggtataagttctgttgtcagctgcaa #### Cutc_ID8808_3 --> 2 - 1 Original Alignment gtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGg aatcaattttgtcccattcaaaatatttactggtctgattattgccttaggtGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGggtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg Alignment from CESAR gtGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGg aatcaattttgtcccattcaaaatatttactggtctgattattgccttaggtGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGggtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg Alignment from Spaln_aa2Genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aatcaattttgtcccattcaaaatatttactggtctgattattgccttagGTGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGGgtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg Alignment from Spaln_nt2Genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aatcaattttgtcccattcaaaatatttactggtctgattattgccttagGTGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGGgtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg Alignment from Pairagon GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aatcaattttgtcccattcaaaatatttactggtctgattattgccttagGTGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGGgtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg Alignment from Exonerate_protein2genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aatcaattttgtcccattcaaaatatttactggtctgattattgccttagGTGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGGgtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg Alignment from Exonerate_coding2genome GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aatcaattttgtcccattcaaaatatttactggtctgattattgccttagGTGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGGgtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg Alignment from GeneWise GTGCTGGTCGGATTGAACTGTGCTCTGGTCTACTGGAGGGAGGAACCACACCCAGTATGG aatcaattttgtcccattcaaaatatttactggtctgattattgccttagGTGCTGGTCGGATAGAATTGTGTCCTGGTCTATTGGAGGGAGGAACAATGCCCAGTATGGgtaagtaacttgcacatcaacaatggcaagtctcttgcacacatcctggg #### Cwf19l1_ID8937_7 --> 1 - 0 Original Alignment aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctaagcttacaaattctgcctcttttttaattttctagaAACCAGGTTGTTGTACAAGAAAGTGCGCAGCATGCCACTTATTTCATAGTGATAGCAAATGTTGGAAATCCCGAAACAAAGAAGgcaagtgtcccatgcttggcctctagaggtctcataaagtgcatgttttc Alignment from CESAR aAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctaagcttacaaattctgcctcttttttaattttctagaAACCAGGTTGTTGTACAAGAAAGTGCGCAGCATGCCACTTATTTCATAGTGATAGCAAATGTTGGAAATCCCGAAACAAAGAAGgcaagtgtcccatgcttggcctctagaggtctcataaagtgcatgttttc Alignment from Spaln_aa2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctaagcttacaaattctgcctcttttttaattttctagAAACCAGGTTGTTGTACAAGAAAGTGCGCAGCATGCCACTTATTTCATAGTGATAGCAAATGTTGGAAATCCCGAAACAAAGAAGgcaagtgtcccatgcttggcctctagaggtctcataaagtgcatgttttc Alignment from Spaln_nt2Genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctaagcttacaaattctgcctcttttttaattttctagAAACCAGGTTGTTGTACAAGAAAGTGCGCAGCATGCCACTTATTTCATAGTGATAGCAAATGTTGGAAATCCCGAAACAAAGAAGgcaagtgtcccatgcttggcctctagaggtctcataaagtgcatgttttc Alignment from Pairagon AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctaagcttacaaattctgcctcttttttaattttctagAAACCAGGTTGTTGTACAAGAAAGTGCGCAGCATGCCACTTATTTCATAGTGATAGCAAATGTTGGAAATCCCGAAACAAAGAAGgcaagtgtcccatgcttggcctctagaggtctcataaagtgcatgttttc Alignment from Exonerate_protein2genome AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG ccaccatcacatctaagcttacaaattctgcctcttttttaattttctagAAACCAGGTTGTTGTACAAGAAAGTGCGCAGCATGCCACTTATTTCATAGTGATAGCAAATGTTGGAAATCCCGAAACAAAGAAGgcaagtgtcccatgcttggcctctagaggtctcataaagtgcatgttttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAACCATGTTGTTCTACAAGAAAGCGCGCAGCATGCCACTCGCTTCATAGCGCTGGCGAATGTTGGAAATCCAGAAAAGAAGAAG------ ccaccatcacatctaagcttacaaattctgcctcttttttaattttctagAAACCAGGTTGTTGTACAAGAAAGTGCGCAGCATGCCACTTATTTCATAGTGATAGCAAATGTTGGAAATCCCGAAACAAAGAAGGCAAGTgtcccatgcttggcctctagaggtctcataaagtgcatgttttc #### Cwf19l1_ID8939_5 --> 2 - 0 Original Alignment gtCGGAAAGGTGTCTTCACTGGAAGCTCGGGGCTACAGATTGTATACCTCAGTGGGACCGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGCTCGGCTTCCCAGTTTAAAGGTGTTGATATCTTACTCACGTCCCCGTGGCCCAAGTACGTGGGGAGCTTTGGGAATTCCTCT tttcataccagcagttaccattaacccctttccatctatttccacttcaggcCGGAAAGGGGTCTTCACTGGAAGCTCAGGGCTACAAATTGTTTATCTCAGTGGGACTGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTTCTAAGGATGTGTCTTCTCTGAGAACCATGCTGTGCGCCGCTTCCCAATTTAAAGGTGTTGATATCCTGCTCATGTCCCCATGGCCCAAGTACGTGGGGAGCTTTGGGAACTCCTCTgtaactagggcttggcctctgaagacaataaaactgactatacttaaacc Alignment from CESAR gtCGGAAAGGTGTCTTCACTGGAAGCTCGGGGCTACAGATTGTATACCTCAGTGGGACCGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGCTCGGCTTCCCAGTTTAAAGGTGTTGATATCTTACTCACGTCCCCGTGGCCCAAGTACGTGGGGAGCTTTGGGAATTCCTCT tttcataccagcagttaccattaacccctttccatctatttccacttcaggcCGGAAAGGGGTCTTCACTGGAAGCTCAGGGCTACAAATTGTTTATCTCAGTGGGACTGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTTCTAAGGATGTGTCTTCTCTGAGAACCATGCTGTGCGCCGCTTCCCAATTTAAAGGTGTTGATATCCTGCTCATGTCCCCATGGCCCAAGTACGTGGGGAGCTTTGGGAACTCCTCTgtaactagggcttggcctctgaagacaataaaactgactatacttaaacc Alignment from Spaln_aa2Genome GTCGGAAAGGTGTCTTCACTGGAAGCTCGGGGCTACAGATTGTATACCTCAGTGGGACCGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGCTCGGCTTCCCAGTTTAAAGGTGTTGATATCTTACTCACGTCCCCGTGGCCCAAGTACGTGGGGAGCTTTGGGAATTCCTCT tttcataccagcagttaccattaacccctttccatctatttccacttcagGCCGGAAAGGGGTCTTCACTGGAAGCTCAGGGCTACAAATTGTTTATCTCAGTGGGACTGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTTCTAAGGATGTGTCTTCTCTGAGAACCATGCTGTGCGCCGCTTCCCAATTTAAAGGTGTTGATATCCTGCTCATGTCCCCATGGCCCAAGTACGTGGGGAGCTTTGGGAACTCCTCTgtaactagggcttggcctctgaagacaataaaactgactatacttaaacc Alignment from Spaln_nt2Genome GTCGGAAAGGTGTCTTCACTGGAAGCTCGGGGCTACAGATTGTATACCTCAGTGGGACCGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGCTCGGCTTCCCAGTTTAAAGGTGTTGATATCTTACTCACGTCCCCGTGGCCCAAGTACGTGGGGAGCTTTGGGAATTCCTCT tttcataccagcagttaccattaacccctttccatctatttccacttcagGCCGGAAAGGGGTCTTCACTGGAAGCTCAGGGCTACAAATTGTTTATCTCAGTGGGACTGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTTCTAAGGATGTGTCTTCTCTGAGAACCATGCTGTGCGCCGCTTCCCAATTTAAAGGTGTTGATATCCTGCTCATGTCCCCATGGCCCAAGTACGTGGGGAGCTTTGGGAACTCCTCTgtaactagggcttggcctctgaagacaataaaactgactatacttaaacc Alignment from Pairagon GTCGGAAAGGTGTCTTCACTGGAAGCTCGGGGCTACAGATTGTATACCTCAGTGGGACCGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGCTCGGCTTCCCAGTTTAAAGGTGTTGATATCTTACTCACGTCCCCGTGGCCCAAGTACGTGGGGAGCTTTGGGAATTCCTCT tttcataccagcagttaccattaacccctttccatctatttccacttcagGCCGGAAAGGGGTCTTCACTGGAAGCTCAGGGCTACAAATTGTTTATCTCAGTGGGACTGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTTCTAAGGATGTGTCTTCTCTGAGAACCATGCTGTGCGCCGCTTCCCAATTTAAAGGTGTTGATATCCTGCTCATGTCCCCATGGCCCAAGTACGTGGGGAGCTTTGGGAACTCCTCTgtaactagggcttggcctctgaagacaataaaactgactatacttaaacc Alignment from Exonerate_protein2genome GTCGGAAAGGTGTCTTCACTGGAAGCTCGGGGCTACAGATTGTATACCTCAGTGGGACCGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGCTCGGCTTCCCAGTTTAAAGGTGTTGATATCTTACTCACGTCCCCGTGGCCCAAGTACGTGGGGAGCTTTGGGAATTCCTCT tttcataccagcagttaccattaacccctttccatctatttccacttcagGCCGGAAAGGGGTCTTCACTGGAAGCTCAGGGCTACAAATTGTTTATCTCAGTGGGACTGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTTCTAAGGATGTGTCTTCTCTGAGAACCATGCTGTGCGCCGCTTCCCAATTTAAAGGTGTTGATATCCTGCTCATGTCCCCATGGCCCAAGTACGTGGGGAGCTTTGGGAACTCCTCTgtaactagggcttggcctctgaagacaataaaactgactatacttaaacc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCGGAAAGGTGTCTTCACTGGAAGCTCGGGGCTACAGATTGTATACCTCAGTGGGACCGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTCCCAAGGATGTGTCTTCTCTGAGAACAATGCTGTGCTCGGCTTCCCAGTTTAAAGGTGTTGATATCTTACTCACGTCCCCGTGGCCCAAGTACGTGGGGAGCTTTGGGAATTCCTCT tttcataccagcagttaccattaacccctttccatctatttccacttcagGCCGGAAAGGGGTCTTCACTGGAAGCTCAGGGCTACAAATTGTTTATCTCAGTGGGACTGAGTCCTTAGATGAACCAGTCCCAGCCCACAGCTTTAGTTCTAAGGATGTGTCTTCTCTGAGAACCATGCTGTGCGCCGCTTCCCAATTTAAAGGTGTTGATATCCTGCTCATGTCCCCATGGCCCAAGTACGTGGGGAGCTTTGGGAACTCCTCTgtaactagggcttggcctctgaagacaataaaactgactatacttaaacc #### Cyb561a3_ID2891_3 --> 0 - 2 Original Alignment TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTtt actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTctgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg Alignment from CESAR TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTtt actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTctgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg Alignment from Spaln_aa2Genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTCTgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg Alignment from Spaln_nt2Genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTCTgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg Alignment from Pairagon TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTCTgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg Alignment from Exonerate_protein2genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTCTgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg Alignment from Exonerate_coding2genome TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTCTgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg Alignment from GeneWise TGGTTCCTGGGCTTTGCTGTCTTCCTCCTGCCCTGGGCATCCCAGTGGCTGCGAAGCCTCCTGAAACCTCTGCATGTATTCTTTGGAGCCTGCATCCTTTCCCTGTCCATCACATCTGTTATTTCCGGCATCAATGAGAAGCTTTTCTTTGTTTT actgcccacagccctgaccatgagaccagctttgtttgtttgtttgaaagTGGTTTCTGGGTGTTGCTGTCTTCCTGCTGCCCTGGGCATCCCAGTGGTTACAAAGTCTCCTGAAGCCTCTGCATCTACTCTTTGGGGCCTGTATCCTTTCTCTGTCCATCACGTCTGTAATTTCAGGTATAAACGAGAAGCTTTTCTTTGTTCTgtagggtgcaattgatgcctagcacttggggatttagaagggaataatgg #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTT------GGGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTT------GGGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTGGGC------GTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca #### Cyp2c29_ID7761_4 --> 2 - 0 Original Alignment gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactctagtgtcctttatacttgccaacttctcttgttttcttctaaggc---TCATGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac Alignment from CESAR gcTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactctagtgtcctttatacttgccaacttctcttgttttcttctaaggcTCA---TGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac Alignment from Spaln_aa2Genome TCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCA tctactctagtgtcctttatacttgccaacttctcttgttttcttctaagGCTCATGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac Alignment from Spaln_nt2Genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactctagtgtcctttatacttgccaacttctcttgttttcttctaagGCTCA---TGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac Alignment from Pairagon GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactctagtgtcctttatacttgccaacttctcttgttttcttctaagGCTCA---TGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac Alignment from Exonerate_protein2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactctagtgtcctttatacttgccaacttctcttgttttcttctaagGCTCA---TGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac Alignment from Exonerate_coding2genome GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactctagtgtcctttatacttgccaacttctcttgttttcttctaagGCTCA---TGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac Alignment from GeneWise GCTCACCCTGTGACCCCACCTTCATCCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTCCAGAATCGTTTTGATTATAAGGATAAGGAATTTCTTATCCTCATGGATAAAATAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG tctactctagtgtcctttatacttgccaacttctcttgttttcttctaagGCTCA---TGTGACCCTACGTTTATCCCAAGTTGTGCTCCGTGTAATGTCATTTGCTCCATCATTTTCCAGAACCGTTTTGACTATAAAGATAAGGAATTCCTTATTCTGATGGATAAAATTAATGAGAATGTGAAAATCCTGAGTTCCCCATGGTTGCAGgtaacctgatcaaaatattaggacagctcacttagatctggatggtatac #### Cyp2c37_ID7844_7 --> 2 - 0 Original Alignment ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagctATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa Alignment from CESAR ctAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagctATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa Alignment from Spaln_aa2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagCTATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa Alignment from Spaln_nt2Genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagCTATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa Alignment from Pairagon CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagCTATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa Alignment from Exonerate_protein2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagCTATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa Alignment from Exonerate_coding2genome CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagCTATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa Alignment from GeneWise CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGCCCATGCATGCAGGACAGGAGCCGCATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTCATCCCCAACAGCCTTCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCAAG ctattcaccttattcacctctctctaacctctctcttttttttaatgtagCTATACTCCAGGAAGAGATTGAGCATGTGATTGGCATGCACCGAAGTCCATGCATGCAGGACAGGAGTCACACTCCTTATAGTGATGCTATGATTCCTGAGGTTCAGACCTTTATTGATCTTATCCCTAACAGTGTTCCCTATGTAGTGACAAGTGGAATTAAGTTCAGAAACTACTTCATCCCGAAGgtaagatacattcttatatccctttagttaagaagcttgtagacatgcaa #### Cyp2c39_ID7783_2 --> 0 - 1 Original Alignment TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAggtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt Alignment from CESAR TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTg ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAggtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt Alignment from Spaln_aa2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAGgtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt Alignment from Spaln_nt2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAGgtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt Alignment from Pairagon TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAGgtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt Alignment from Exonerate_protein2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAGgtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt Alignment from Exonerate_coding2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagTTTTCAAAAGCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAGgtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt Alignment from GeneWise CCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTG ttgtagaagtccatgatcactaaagttctttctcttttggggccacatagttttcaaaagCCTATGGCCCCCTGTTCACTGTGTATTTGGGCTCTCGTCCCGCTGTTGTACTATATGGGTATGAAGCAGTGAAGGAGGCTCTGATTGATCATGGAGAAGAGTTCTCTGACAGAGGAAGCATCCCAATGGTAGATGAGATCAATAATGGCCTAGgtgagtaaaagtatatgcatgttcagattagaggctatgagaaattaatt #### Cyp2c39_ID7786_5 --> 0 - 0 Original Alignment GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc Alignment from CESAR GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc Alignment from Spaln_aa2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc Alignment from Spaln_nt2Genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc Alignment from Pairagon GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc Alignment from Exonerate_protein2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc Alignment from Exonerate_coding2genome GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc Alignment from GeneWise GTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTACTAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGTTACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAG atgtatctgggttaatattggttcagacttagctgtgtctcattgttcagGTTTGCAATAATTTTTCCTTGCTTATTGACTATTGTCCAGGGAGTCATCAAAAAGTGCTAAAAAATGTCAAGTACATTAGAAGCTACCTGCTTGAGAAAATAGAGGAACACCAAGAATCACTGGATGTCACAAACCCCCATGACTTTATTGATTACTACTTGATCAAACAGCAGCAAgtaaactgttaacgtaagactattttatgacataagactattttatgtgc #### Cyp2c40_ID7820_4 --> 2 - 0 Original Alignment gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcaggcTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt Alignment from CESAR gcTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcaggcTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt Alignment from Spaln_aa2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcagGCTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt Alignment from Spaln_nt2Genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcagGCTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt Alignment from Pairagon GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcagGCTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt Alignment from Exonerate_protein2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcagGCTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt Alignment from Exonerate_coding2genome GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcagGCTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt Alignment from GeneWise GCTCACCCTGTGATCCCCAATTCATCATAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATCGTTTCGATTATAAGGATAAGGATTTTCTTAGCTTGATAGGAAAAGTGAATGAATGCACTGAAATTTTGAGCTCTCCTGGGTGTCAG aagcattggttcacttttcaaggacatttctcccataactaatctcgcagGCTCACCCTGTGATCCCCAGTTTATCCTAGGATGTGCTCCCTGCAATGTCATCTGCTCCATTGTTTTCCAGAATTGCTTTGATTATGAGGATAAGGACTTTCTTAGCCTGGTAGGCAAAGTGAATGAATGCACTGAAATATTGAGTTCCTCTGGGTGTCAGgtatatcaactcaaaatcaatggcagatacttccattttgtagggtggtt #### Cyp2c40_ID7821_3 --> 2 - 1 Original Alignment gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg ctagtacatatttttaatggtgtattctcattcctgctttctcatgacaggcATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATggtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg Alignment from CESAR gcATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATg ctagtacatatttttaatggtgtattctcattcctgctttctcatgacaggcATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATggtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg Alignment from Spaln_aa2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ctagtacatatttttaatggtgtattctcattcctgctttctcatgacagGCATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATGgtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg Alignment from Spaln_nt2Genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ctagtacatatttttaatggtgtattctcattcctgctttctcatgacagGCATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATGgtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg Alignment from Pairagon GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ctagtacatatttttaatggtgtattctcattcctgctttctcatgacagGCATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATGgtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg Alignment from Exonerate_protein2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ctagtacatatttttaatggtgtattctcattcctgctttctcatgacagGCATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATGgtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg Alignment from Exonerate_coding2genome GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ctagtacatatttttaatggtgtattctcattcctgctttctcatgacagGCATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATGgtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg Alignment from GeneWise GCATTGGTTTTAGCCATGGAAATGTATGGAAAGCCACAAGGGTCTTCACAGTGAATACCTTGAGGAACTTGGGCATGGGAAAAAGGACCATTGAGAACAAAGTGCAAGAGGAAGCACAGTGGCTCATGAAGGAACTGAAGAAAACAAATG ctagtacatatttttaatggtgtattctcattcctgctttctcatgacagGCATAGGTTTTAGTCATGGGAATGTATGGAAAGCCACAAGGGTCTTCACAGTAAATAGTTTAAGGAACTTAGGCATGGGAAAAAGGACTATAGAGAATAAGGTACAGGAGGAAGCTCAATGGGTTATGAAGGAACTGAAGAAGACAAATGgtaaggtcaagctagattcctccatgacagaaaacatgtcctccagtcgg #### Cyp2c44_ID8889_2 --> 0 - 1 Original Alignment CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATg gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGGT---GAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATggtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata Alignment from CESAR CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATg gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGGT---GAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATggtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata Alignment from Spaln_aa2Genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGGT---GAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATGgtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata Alignment from Spaln_nt2Genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGG---TGAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATGgtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata Alignment from Pairagon CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGG---TGAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATGgtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata Alignment from Exonerate_protein2genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGGT---GAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATGgtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata Alignment from Exonerate_coding2genome CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGGT---GAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATGgtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata Alignment from GeneWise CTGGCCAAAGAGTATGGGCCTGTTTACACTCTGTACTTTGGATCCTGGCCTACCGTGGTCCTACATGGCTATGATGTGGTGAAGGAAGCGCTACTCAATCAAGGTGATGAGTTCCTTGGGAGAGGACCTCTGCCCATTATCGAAGATAGCCAGAAGGGACATG gctaaaccacttacaatctggtaataaacaccgtgtgtccatgtccacagTTGGCCAAAGAGTATGGACCAGTTTACATGTTATATTTTGGATCCTGGCCTACTGTAGTCATACATGGCTATGATGTGGTGAAGGAGGTAATACTCAATCAAGGT---GAGTTCCTTGGTAGGGGACCTCTGCCCATAATTAAAGACAGCCAGAAGGGACATGgtaaacttcaagctagtgttgaggctcgccctctgaaattccagtgcata #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from CESAR TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATG---GCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Pairagon TTATCAAAAGTTT---ATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from GeneWise TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATG--------------------------------------------------- ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGGTAACAATAGGTTTGGAATACCAGTGAGAGAATGTGTGAGTCCATCCCAG #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa #### Cyp2c55_ID7726_3 --> 2 - 1 Original Alignment ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccaggtGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACggtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg Alignment from CESAR ggGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATg taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccaggtGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACggtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg Alignment from Spaln_aa2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccagGTGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACGgtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg Alignment from Spaln_nt2Genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccagGTGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACGgtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg Alignment from Pairagon GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccagGTGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACGgtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg Alignment from Exonerate_protein2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccagGTGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACGgtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg Alignment from Exonerate_coding2genome GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccagGTGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACGgtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg Alignment from GeneWise GGGTGATTTTCAGCAATGGAACAAAATGGAAGGAGCTTCGGCGCTTCTCAATCATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATCGAGGATCGCATTCAAGAGGAAGCATCCTGTCTTGTGGAAGAGCTAAGAAAAGCAAATG taatcagagcaagatttaagtggcggtcttgtatttcttgtctctgccagGTGTTATTTTCAGCAATGGAACAAAGTGGAAAGAGCTTTGGTGCTTTTCAACTATGACCTTGAGGAGTTTTGGGATGGGGAAGAGGAGCATAGAGGATTGCATTCAAGAGGAAGCATCCTGCCTTGTGGAAAAGCTCAGAAAGCCAAACGgtaagtatcacatggcgaattgctgctgtcaagtgacactagttaacagg #### Cyp2c55_ID7728_5 --> 0 - 0 Original Alignment GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac Alignment from CESAR GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac Alignment from Spaln_aa2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac Alignment from Spaln_nt2Genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac Alignment from Pairagon GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac Alignment from Exonerate_protein2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac Alignment from Exonerate_coding2genome GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac Alignment from GeneWise ---TACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG ttgaaaaattcagtgagtgatgcattcacacttctttaactctaactcagGTCTACAATGCTCTGCCTACCCTCATTAATTACCTCCCAGGAAGTCACAACAAAGTAATAAAAAACTTTACTGAAATACAAAGCTATATTTTGGGACGGGTAAAAGAACACCAGGAAACACTGGACATGGACAATCCCCGAGACTTTATTGATTGTTTCCTAATCAGAATGGAACAGgtaaggtatacaactaaaaaatttactttccactcattaagcaccggcac #### Cyp2c65_ID7737_3 --> 2 - 1 Original Alignment ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagggGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAggtgagtattacatccttcatacttttctctttacaggattcctcactgtg Alignment from CESAR ggGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAg aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagggGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAggtgagtattacatccttcatacttttctctttacaggattcctcactgtg Alignment from Spaln_aa2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagGGGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAGgtgagtattacatccttcatacttttctctttacaggattcctcactgtg Alignment from Spaln_nt2Genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagGGGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAGgtgagtattacatccttcatacttttctctttacaggattcctcactgtg Alignment from Pairagon GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagGGGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAGgtgagtattacatccttcatacttttctctttacaggattcctcactgtg Alignment from Exonerate_protein2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagGGGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAGgtgagtattacatccttcatacttttctctttacaggattcctcactgtg Alignment from Exonerate_coding2genome GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagGGGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAGgtgagtattacatccttcatacttttctctttacaggattcctcactgtg Alignment from GeneWise GGGTTGTTTTCAGCAGTGGGAGGACCTGGAAAGAGATGAGACGCTTCTCACTCATGACTCTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGACCGAATTCAAGAGGAGGCTCGCTGTCTTGTGGATGAATTGAGGAAAACCAAAG aatctttgcctgcctaggaagctcccacttttttcttgagtgttttgcagGGGCTGTCTTCAGCAGTGGGAGGACCTGGAAAGGGATGAGGGGCTTCTCACTCATGACTTTGCGAAACTTTGGGATGGGGAGGAGGAGCATTGAGGATCGGATTCAAGAGGAAGCCCGATGTCTTGTGGATGAACTGAGGAAAACCAAAGgtgagtattacatccttcatacttttctctttacaggattcctcactgtg #### Cyp2c66_ID7747_2 --> 0 - 1 Original Alignment TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTggtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa Alignment from CESAR TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTg catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTggtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa Alignment from Spaln_aa2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa Alignment from Spaln_nt2Genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa Alignment from Pairagon TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa Alignment from Exonerate_protein2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa Alignment from Exonerate_coding2genome TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa Alignment from GeneWise TTTTCAAAAGTCTATGGCCCTGTGTTTACTCTGTACTTGGGCAAAAAGCCTGCTGTGGTGTTACATGGATATAAAGCTGTGAAAGAAGCCTTGATTGATCATGGGGAGGAGTTTGCTGGAAGAGGAACCTTTCCAGTGGCTGACAAGTTTATCAGAAGATGTG catactgtagcttaatttgtttgttttgttttgatatgtttaataaacagTTTTCAAAAGTTTATGGCCCTGTCTTTACTCTGTACTTAGGCAAGAAACCTGCTGTGGTGCTGCATGGATATAAGACTGTGAAAGAGGCCTTGATTGATCATGGGGAAGAATTTGCTGGAAGGGGGACCTTTCCAGTAGCTGGTAAGTTTATCAGAGGCTGTGgtaagtatgcttactattgagttcacactgcatatctgagtggccaggaa #### Cyp2c66_ID7750_5 --> 0 - 0 Original Alignment GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGAAGC---AGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAATT------GATGAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt Alignment from CESAR GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGAAGC---AGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAATTGAT------GAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt Alignment from Spaln_aa2Genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGA---AGCAGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAATTGAT------GAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt Alignment from Spaln_nt2Genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGAAG---CAGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAAT------TGATGAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt Alignment from Pairagon GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGAAG---CAGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAAT------TGATGAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt Alignment from Exonerate_protein2genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGA---AGCAGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAATTGAT------GAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt Alignment from Exonerate_coding2genome GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGA---AGCAGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAATTGAT------GAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt Alignment from GeneWise GTTTGCAATAATTTTCCCGCTATCATTGATTATCTACCAGGAAGACACAGAAAATTACTTAAAAATTTTGATTTTGCAAAACATTACTTTTTGGCAAAAGTAATACAGCATAAAGAGTCACTGGATATTAACAATCCTCGGGACTTTATTGATTGTTTCCTGATCAAAATGGAGCAG tgcaacacatatgtacattctgtgcctttcttttactaatattttctcagGTCTGCAATAATTTTCCTGCTATCATTGATTATCTGCCAGGAAGC---AGGAAATTACTCAAAAACTTTGACTTTGCAAAACATTACTTTTTGGCTAAGGTAATTGAT------GAGTCCCTGGACATTAACAACCCTCGGGACTTTATTGATTGTTTCCTCATTAAAATTGAGCAGgtgggtctcaggactttattcattgtttccacattaaaatttgaacaggt #### Cyp2c66_ID7752_7 --> 2 - 0 Original Alignment ccAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagccAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga Alignment from CESAR ccAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagccAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga Alignment from Spaln_aa2Genome CCAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagCCAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga Alignment from Spaln_nt2Genome CCAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagCCAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga Alignment from Pairagon CCAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagCCAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga Alignment from Exonerate_protein2genome CCAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagCCAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga Alignment from Exonerate_coding2genome CCAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagCCAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga Alignment from GeneWise CCAAAGTCCAGGCAGAGATCGACTGTGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGGCATAGCATGCCCTACACTGATGCTGTGTTGCATGAGATCCAGAGATACATTGATCTCCTTCCCACCAGCCTTCCCCATGCCGTGACCCGTGACGTGAAATTCAGAGAGTATCTCATTCCCAAG ctggtgtgagcatttgtttcaggactcattccctttctttctcttcccagCCAAAGTCCAGACAGAGATTGACTGTGTAATTGGCAGACACAGGAGTTCCTGCATGCAGGACACTCACAGCATGCCATACACTGATGCTGTACTGCATGAGATCCAACAATACATTGATCTCCTTCCCACCAGTCTCCCCCATGCTGTAACCCGTGATGTAAAATTCAGAGGATATCTTGTCCCCATGgtaggtgtcccagttctgcactgtaaatcgatgatcttcatctcataaga #### Cyp2c66_ID7753_8 --> 0 - 1 Original Alignment GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAggtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa Alignment from CESAR GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAg tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAggtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa Alignment from Spaln_aa2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa Alignment from Spaln_nt2Genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTT---TCCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa Alignment from Pairagon GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTT---TCCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa Alignment from Exonerate_protein2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa Alignment from Exonerate_coding2genome GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa Alignment from GeneWise GGCACCACTGTCATAGCATCACTGACTTCTGTGCTATATGATGATAAAGAATTCCTCAACCCAGAGAGGTTTGATCCTAGTCACTTTCTGGATGAGAGTGGCAAGTTTAAGAAAAGTGACTACTTTTTTCCTTTCTCAACAG tctctgaaacctgtatgttgtttgaaatctaattcttcttccctggacagGGCTCTACTGTGATAGCATCACTAACTCCTGTGCTATATGATGAAAAGGAGTTCCTAAACCCTGAAAGGTTT---CCCAGTCACCTGCTTGATGAAAGTGGCAAGTTTAAAAAGAGTGATTACTTTTTTCCCTTCTCAACAGgtatgatgaaaatttattcagggtcttttcaatctcaagaatattatgaa #### Cyp2c67_ID7797_5 --> 0 - 0 Original Alignment ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATGTCAG agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGG---gtatatgattgagcttagtttaaattcatcacctcactggaaactgtcaa Alignment from CESAR ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATGTCAG agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGG---gtatatgattgagcttagtttaaattcatcacctcactggaaactgt Alignment from Spaln_aa2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATGT agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGGgtatatgattgagcttagtttaaattcatcacctcactggaaactgtcaa Alignment from Spaln_nt2Genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATG---------TCAG agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGGGTATATGATTGAgcttagtttaaattcatcacctcactggaaactgtcaa Alignment from Pairagon ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATGT agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGGgtatatgattgagcttagtttaaattcatcacctcactggaaactgtcaa Alignment from Exonerate_protein2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATGT agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGGgtatatgattgagcttagtttaaattcatcacctcactggaaactgtcaa Alignment from Exonerate_coding2genome ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATGT agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGGgtatatgattgagcttagtttaaattcatcacctcactggaaactgtcaa Alignment from GeneWise ATTTTCAATGCAGTCCCTATTCTTATTGATTATTGTCCAGGAAGGCATAATAAATTTTTTAAAAATCATACATGGATTAAGAGCTATCTTTTGGAGAAAATAAAAGAACATGAAGAATCATTGGATGTTACAAATCCTCGGGACTTCATTGATTACTTCCTAATTCAAAGATGT agttgctataatattgcttatctatcagttggtcttgttgttgctttcagATTTTTAATGCAGTTCCTATTCTCATTGAGTATTGTCCTGGCAGTCATAATAAATTCTTTGAAAATCATACATGGATTAAGAGTTATCTTTTGAAGAAGATAAAAAAATATGAGGAATCATTGGATGTCACAAATCCTCGGGACTTCATCAAATACTATCTAATTCAGAGATGGgtatatgattgagcttagtttaaattcatcacctcactggaaactgtcaa #### Cyp2c69_ID7827_8 --> 0 - 1 Original Alignment GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAggtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg Alignment from CESAR GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAg tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAggtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg Alignment from Spaln_aa2Genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAGgtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg Alignment from Spaln_nt2Genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAGgtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg Alignment from Pairagon GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAGgtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg Alignment from Exonerate_protein2genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAGgtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg Alignment from Exonerate_coding2genome GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAGgtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg Alignment from GeneWise GGAACACAGGTAATGACATCACTGTCATCAGTGCTGCATGACAGCACGGAGTTCCCCAACCCAGAGGTGTTTGACCCTGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTCGTGCCTTTCTCAGCAG tacttttgaacatctgtacactgctggcatcctgtgtgctctgtctccagGGAACTCAGGTAATGTCTTCACTGCCTCCAGTTCTCCATTACAGCATGAAGTTCCCCAACCCAGTGGTGTTTGACCCGGGCCACTTTCTAGATGACAATGGAAACTTTAAGAAAAGTGACTACTTTGTGCCATTCTCAGCAGgtaatggaaagctaatcccatggccgcagtaggatacagtacagatctgg #### Cyp2c70_ID7878_2 --> 0 - 1 Original Alignment CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAggtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca Alignment from CESAR CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAg caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAggtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca Alignment from Spaln_aa2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAGgtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca Alignment from Spaln_nt2Genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAGgtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca Alignment from Pairagon CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAGgtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca Alignment from Exonerate_protein2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAGgtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca Alignment from Exonerate_coding2genome CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAGgtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca Alignment from GeneWise CTAGCAAAAAAGTATGGCCCTGTGTTTACTGTATACCTGGGCATGAAGCCCACTGTGGTGCTGCATGGATACAAAGCAATGAAGGAAGCTCTGATTGACCAGGGAGATGAGTTTTCTGATAAAACGGATTCATCGTTACTCAGTAGAACCAGCCAAGGCTTAG caccaatgtagcatgttgtggaggacactcaatttgatgcccctttgaagTTAGCAAAAATGTATGGCCCTGTATTTACTGTGTATGTGGGCATGAAGCCCACTGTGGTTCTGCATGGGTACAAACCCATGAAAGAAGCTCTGATTGACCAGGGGGATGAATTCTCTGATAAAACAGACTCAACACTAATCAGCAGAACAAGCCAAGGCCTAGgtaactcctcttgtttggggcattcagaccagtgcacctgtcacaggaca #### D19Bwg1357e_ID5844_8 --> 0 - 2 Original Alignment TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaa tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAaagtttgtatgcattttattaattgttcacaggcaacatattatttaataat Alignment from CESAR TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAaa tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAaagtttgtatgcattttattaattgttcacaggcaacatattatttaataat Alignment from Spaln_aa2Genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtttgtatgcattttattaattgttcacaggcaacatattatttaataat Alignment from Spaln_nt2Genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtttgtatgcattttattaattgttcacaggcaacatattatttaataat Alignment from Pairagon TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtttgtatgcattttattaattgttcacaggcaacatattatttaataat Alignment from Exonerate_protein2genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtttgtatgcattttattaattgttcacaggcaacatattatttaataat Alignment from Exonerate_coding2genome TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtttgtatgcattttattaattgttcacaggcaacatattatttaataat Alignment from GeneWise TCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGCTTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAA tccatactggtcttaaaccacattcagttctgtacttgtgtgtttttcagTCTGCAGATCACCCCACACTGGACAAGGTACTGGAGCTGCAACCAGCAAAGTTAGAGCTTATTATGGATGAGATGAAGCAGATTCTCACACCAATGGCCCAAAAgtttgtatgcattttattaattgttcacaggcaacatattatttaataat #### D19Bwg1357e_ID5848_4 --> 1 - 0 Original Alignment aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagaAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa Alignment from CESAR aAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagaAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa Alignment from Spaln_aa2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagAAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa Alignment from Spaln_nt2Genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagAAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa Alignment from Pairagon AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagAAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa Alignment from Exonerate_protein2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagAAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa Alignment from Exonerate_coding2genome AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagAAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa Alignment from GeneWise AAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGAAGTTGATTCAAGGGAAAATTAAAACT ttactgacttttagcaaactaccatgcacctaactttctgtgctccatagAAAAGATTGTGACAAGGAAAAGCGGGTAAAGCACATGAGTGATTTACAGAAATTAATTCAAGGGAAGATTAAAACTgtaggtaggggtgttccttttccatccaagctacttttgctattgctgaa #### D19Bwg1357e_ID5851_2 --> 2 - 1 Original Alignment agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTggtaaattcattactgaggttcctggccaagtcagacatcactctactggt Alignment from CESAR agTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATg tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagagTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTggtaaattcattactgaggttcctggccaagtcagacatcactctactggt Alignment from Spaln_aa2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaattcattactgaggttcctggccaagtcagacatcactctactggt Alignment from Spaln_nt2Genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTCAA---CAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaattcattactgaggttcctggccaagtcagacatcactctactggt Alignment from Pairagon AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaattcattactgaggttcctggccaagtcagacatcactctactggt Alignment from Exonerate_protein2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaattcattactgaggttcctggccaagtcagacatcactctactggt Alignment from Exonerate_coding2genome AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaattcattactgaggttcctggccaagtcagacatcactctactggt Alignment from GeneWise AGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAAAGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAACAAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAATTCCAGCCAGATGGTGAAAGTGATG tagtttcaaaacacaattgaactcctggccctgcctctctgttgttccagAGTCTAGCTCATCAAAGACTTTTCCAAGGAAAGCTGTTAGGGAAGGTGGGCCTAAAGTCACATCTAAGAACTTCAAAAAAGGCGCAACAAAAGCTGGCAAGAAAGGTGTGAAACAGTTC---AACAAGCCACAAGGGGGCACAGGACCAAGGGATAAGGTTCATAGAGCAAACAAATTCAGCAAGAAACGAAAATTCCAGCCAGATGGGGAAAGTTCTGgtaaattcattactgaggttcctggccaagtcagacatcactctactggt #### Dagla_ID2756_14 --> 1 - 2 Original Alignment tGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCag tcatagtgtgatatgttgaaaatcctcttcctttcttcttgtgtttctagtGAGGATGCTATGGAATACTCGAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAaggtaaattctacactttgacctcaactcaacccatacttcctgcactctct Alignment from CESAR tGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCag tcatagtgtgatatgttgaaaatcctcttcctttcttcttgtgtttctagtGAGGATGCTATGGAATACTCGAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAaggtaaattctacactttgacctcaactcaacccatacttcctgcactctct Alignment from Spaln_aa2Genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatagtgtgatatgttgaaaatcctcttcctttcttcttgtgtttctagTGAGGATGCTATGGAATACTCGAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaattctacactttgacctcaactcaacccatacttcctgcactctct Alignment from Spaln_nt2Genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatagtgtgatatgttgaaaatcctcttcctttcttcttgtgtttctagTGAGGATGCTATGGAATACTCGAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaattctacactttgacctcaactcaacccatacttcctgcactctct Alignment from Pairagon TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatagtgtgatatgttgaaaatcctcttcctttcttcttgtgtttctagTGAGGATGCTATGGAATACTCGAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaattctacactttgacctcaactcaacccatacttcctgcactctct Alignment from Exonerate_protein2genome TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatagtgtgatatgttgaaaatcctcttcctttcttcttgtgtttctagTGAGGATGCTATGGAATACTCGAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaattctacactttgacctcaactcaacccatacttcctgcactctct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGAGGATGCTATGGAATACTCCAAAGAGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAG tcatagtgtgatatgttgaaaatcctcttcctttcttcttgtgtttctagTGAGGATGCTATGGAATACTCGAAAGAATTTGTGACTGCTGTAGTTCTGGGTAAAGACCTTGTTCCAAGgtaaattctacactttgacctcaactcaacccatacttcctgcactctct #### Dagla_ID2761_9 --> 1 - 0 Original Alignment gTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG caacagtgcagtcacactactttactacatgcctccgtcatttcttctagtTGCTGTCTCTGCCCTGCACGACCCTGCTTTGCCCCCGGGGTCACTATTGAGGAAGACAACTGTTGTGGCTGCAATGCAATTGCTATCCGATGCCACTTCCTGGATGATAACATGGCTGCTCTAGATATTATCTTCACCTCCTGCCATGATGCGgtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt Alignment from CESAR gTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG caacagtgcagtcacactactttactacatgcctccgtcatttcttctagtTGCTGTCTCTGCCCTGCACGACCCTGCTTTGCCCCCGGGGTCACTATTGAGGAAGACAACTGTTGTGGCTGCAATGCAATTGCTATCCGATGCCACTTCCTGGATGATAACATGGCTGCTCTAGATATTATCTTCACCTCCTGCCATGATGCGgtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt Alignment from Spaln_aa2Genome GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG caacagtgcagtcacactactttactacatgcctccgtcatttcttctagTTGCTGTCTCTGCCCTGCACGACCCTGCTTTGCCCCCGGGGTCACTATTGAGGAAGACAACTGTTGTGGCTGCAATGCAATTGCTATCCGATGCCACTTCCTGGATGATAACATGGCTGCTCTAGATATTATCTTCACCTCCTGCCATGATGCGgtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt Alignment from Spaln_nt2Genome GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG caacagtgcagtcacactactttactacatgcctccgtcatttcttctagTTGCTGTCTCTGCCCTGCACGACCCTGCTTTGCCCCCGGGGTCACTATTGAGGAAGACAACTGTTGTGGCTGCAATGCAATTGCTATCCGATGCCACTTCCTGGATGATAACATGGCTGCTCTAGATATTATCTTCACCTCCTGCCATGATGCGgtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt Alignment from Pairagon GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG caacagtgcagtcacactactttactacatgcctccgtcatttcttctagTTGCTGTCTCTGCCCTGCACGACCCTGCTTTGCCCCCGGGGTCACTATTGAGGAAGACAACTGTTGTGGCTGCAATGCAATTGCTATCCGATGCCACTTCCTGGATGATAACATGGCTGCTCTAGATATTATCTTCACCTCCTGCCATGATGCGgtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt Alignment from Exonerate_protein2genome GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG caacagtgcagtcacactactttactacatgcctccgtcatttcttctagTTGCTGTCTCTGCCCTGCACGACCCTGCTTTGCCCCCGGGGTCACTATTGAGGAAGACAACTGTTGTGGCTGCAATGCAATTGCTATCCGATGCCACTTCCTGGATGATAACATGGCTGCTCTAGATATTATCTTCACCTCCTGCCATGATGCGgtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt Alignment from Exonerate_coding2genome caacagtgcagtcacactactttactacatgcctccgtcatttcttctagttgctgtctctgccctgcacgaccctgctttgcccccggggtcactattgaggaagacaactgttgtggctgcaatgcaattgctatccgatgccacttcctggatgataacatggctgctctagatattatcttcacctcctgccatgatgcggtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt Alignment from GeneWise GTGCTGTCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAACGCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTCACGATGCG caacagtgcagtcacactactttactacatgcctccgtcatttcttctagTTGCTGTCTCTGCCCTGCACGACCCTGCTTTGCCCCCGGGGTCACTATTGAGGAAGACAACTGTTGTGGCTGCAATGCAATTGCTATCCGATGCCACTTCCTGGATGATAACATGGCTGCTCTAGATATTATCTTCACCTCCTGCCATGATGCGgtgagcgatcaggatattcgctaatgaccaggttataacggaaactcctt #### Dagla_ID2762_8 --> 0 - 2 Original Alignment CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc ctgctggtttgattgtataagctcccaaaccccctctgatttcctcacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTATATGCTCTTAGCCCTGGCTGCCTATGGATGGCCTATGTACTTGATGAGGAAGCCCACCTGCGGCCTCTGTCAGTTTGCCCGGTCATGCtcgtaagctcctggttgcctcctcattggagatttactgaggtgcctcagct Alignment from CESAR CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCtc ctgctggtttgattgtataagctcccaaaccccctctgatttcctcacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTATATGCTCTTAGCCCTGGCTGCCTATGGATGGCCTATGTACTTGATGAGGAAGCCCACCTGCGGCCTCTGTCAGTTTGCCCGGTCATGCtcgtaagctcctggttgcctcctcattggagatttactgaggtgcctcagct Alignment from Spaln_aa2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC ctgctggtttgattgtataagctcccaaaccccctctgatttcctcacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTATATGCTCTTAGCCCTGGCTGCCTATGGATGGCCTATGTACTTGATGAGGAAGCCCACCTGCGGCCTCTGTCAGTTTGCCCGGTCATGCTCgtaagctcctggttgcctcctcattggagatttactgaggtgcctcagct Alignment from Spaln_nt2Genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC ctgctggtttgattgtataagctcccaaaccccctctgatttcctcacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTATATGCTCTTAGCCCTGGCTGCCTATGGATGGCCTATGTACTTGATGAGGAAGCCCACCTGCGGCCTCTGTCAGTTTGCCCGGTCATGCTCgtaagctcctggttgcctcctcattggagatttactgaggtgcctcagct Alignment from Pairagon CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC ctgctggtttgattgtataagctcccaaaccccctctgatttcctcacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTATATGCTCTTAGCCCTGGCTGCCTATGGATGGCCTATGTACTTGATGAGGAAGCCCACCTGCGGCCTCTGTCAGTTTGCCCGGTCATGCTCgtaagctcctggttgcctcctcattggagatttactgaggtgcctcagct Alignment from Exonerate_protein2genome CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC ctgctggtttgattgtataagctcccaaaccccctctgatttcctcacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTATATGCTCTTAGCCCTGGCTGCCTATGGATGGCCTATGTACTTGATGAGGAAGCCCACCTGCGGCCTCTGTCAGTTTGCCCGGTCATGCTCgtaagctcctggttgcctcctcattggagatttactgaggtgcctcagct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATGGCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTC ctgctggtttgattgtataagctcccaaaccccctctgatttcctcacagCATGAGATGTTACACTACAAAGAAGTTTGCTATTATATGCTCTTAGCCCTGGCTGCCTATGGATGGCCTATGTACTTGATGAGGAAGCCCACCTGCGGCCTCTGTCAGTTTGCCCGGTCATGCTCgtaagctcctggttgcctcctcattggagatttactgaggtgcctcagct #### Dagla_ID2765_6 --> 0 - 0 Original Alignment GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG aactctatcaacccttccaccagtactcatcatctacacatttctcctagGATGCTTACACAGAAATTGCTTATGTCTTTGCAGAACTTTCCCGTGACCTTGACATTGTACCATCTGACATCATTGCTGGCCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCGGTGCTGGACAAGgtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag Alignment from CESAR GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG aactctatcaacccttccaccagtactcatcatctacacatttctcctagGATGCTTACACAGAAATTGCTTATGTCTTTGCAGAACTTTCCCGTGACCTTGACATTGTACCATCTGACATCATTGCTGGCCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCGGTGCTGGACAAGgtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag Alignment from Spaln_aa2Genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG aactctatcaacccttccaccagtactcatcatctacacatttctcctagGATGCTTACACAGAAATTGCTTATGTCTTTGCAGAACTTTCCCGTGACCTTGACATTGTACCATCTGACATCATTGCTGGCCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCGGTGCTGGACAAGgtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag Alignment from Spaln_nt2Genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG aactctatcaacccttccaccagtactcatcatctacacatttctcctagGATGCTTACACAGAAATTGCTTATGTCTTTGCAGAACTTTCCCGTGACCTTGACATTGTACCATCTGACATCATTGCTGGCCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCGGTGCTGGACAAGgtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag Alignment from Pairagon GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG aactctatcaacccttccaccagtactcatcatctacacatttctcctagGATGCTTACACAGAAATTGCTTATGTCTTTGCAGAACTTTCCCGTGACCTTGACATTGTACCATCTGACATCATTGCTGGCCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCGGTGCTGGACAAGgtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag Alignment from Exonerate_protein2genome GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG aactctatcaacccttccaccagtactcatcatctacacatttctcctagGATGCTTACACAGAAATTGCTTATGTCTTTGCAGAACTTTCCCGTGACCTTGACATTGTACCATCTGACATCATTGCTGGCCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCGGTGCTGGACAAGgtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag Alignment from Exonerate_coding2genome aactctatcaacccttccaccagtactcatcatctacacatttctcctaggatgcttacacagaaattgcttatgtctttgcagaactttcccgtgaccttgacattgtaccatctgacatcattgctggcctagtgttgcttaggcagcggcagcgtgccagaagcaatgcggtgctggacaaggtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag Alignment from GeneWise GATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCTCCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGAG aactctatcaacccttccaccagtactcatcatctacacatttctcctagGATGCTTACACAGAAATTGCTTATGTCTTTGCAGAACTTTCCCGTGACCTTGACATTGTACCATCTGACATCATTGCTGGCCTAGTGTTGCTTAGGCAGCGGCAGCGTGCCAGAAGCAATGCGGTGCTGGACAAGgtaaggacctgggtagcagtcctcttaatatccagcaaccaacagcatag #### Dagla_ID2766_5 --> 1 - 0 Original Alignment gCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA aaggcattcctattccaccatcttggctacctctctctctctcccctcagaCACCAGTTAGAGGAGGGTCAAGCTACCAGCTGGTCTTGTCGTCTAAAGGTCTTCTTCTGTTGCACCCGTACAAAAGACCCTCAATCAgtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt Alignment from CESAR gCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA aaggcattcctattccaccatcttggctacctctctctctctcccctcagaCACCAGTTAGAGGAGGGTCAAGCTACCAGCTGGTCTTGTCGTCTAAAGGTCTTCTTCTGTTGCACCCGTACAAAAGACCCTCAATCAgtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt Alignment from Spaln_aa2Genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA aaggcattcctattccaccatcttggctacctctctctctctcccctcagACACCAGTTAGAGGAGGGTCAAGCTACCAGCTGGTCTTGTCGTCTAAAGGTCTTCTTCTGTTGCACCCGTACAAAAGACCCTCAATCAgtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt Alignment from Spaln_nt2Genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA aaggcattcctattccaccatcttggctacctctctctctctcccctcagACACCAGTTAGAGGAGGGTCAAGCTACCAGCTGGTCTTGTCGTCTAAAGGTCTTCTTCTGTTGCACCCGTACAAAAGACCCTCAATCAgtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt Alignment from Pairagon GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA aaggcattcctattccaccatcttggctacctctctctctctcccctcagACACCAGTTAGAGGAGGGTCAAGCTACCAGCTGGTCTTGTCGTCTAAAGGTCTTCTTCTGTTGCACCCGTACAAAAGACCCTCAATCAgtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt Alignment from Exonerate_protein2genome GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA aaggcattcctattccaccatcttggctacctctctctctctcccctcagACACCAGTTAGAGGAGGGTCAAGCTACCAGCTGGTCTTGTCGTCTAAAGGTCTTCTTCTGTTGCACCCGTACAAAAGACCCTCAATCAgtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt Alignment from Exonerate_coding2genome aaggcattcctattccaccatcttggctacctctctctctctcccctcagacaccagttagaggagggtcaagctaccagctggtcttgtcgtctaaaggtcttcttctgttgcacccgtacaaaagaccctcaatcagtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt Alignment from GeneWise GCACCGGTTAGAGGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCCCAGTCA aaggcattcctattccaccatcttggctacctctctctctctcccctcagACACCAGTTAGAGGAGGGTCAAGCTACCAGCTGGTCTTGTCGTCTAAAGGTCTTCTTCTGTTGCACCCGTACAAAAGACCCTCAATCAgtatgtacccgaccttgcctgccttgaatgtattcccgggtgagtctttt #### Dak_ID2908_5 --> 0 - 1 Original Alignment GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGg ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGggtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta Alignment from CESAR GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGg ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGggtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta Alignment from Spaln_aa2Genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGGgtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta Alignment from Spaln_nt2Genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGGgtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta Alignment from Pairagon GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGGgtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta Alignment from Exonerate_protein2genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGGgtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta Alignment from Exonerate_coding2genome GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGGgtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta Alignment from GeneWise GTGGCAGGTGCTCTGGCTGAGGAAGGAATGGGGCTGGAGGAGATCACAAAGAGGGTGAGCGTGATCGCCAAGACCATGG ctctctgtttagctaaatgtggttatggtcactattccactactttgcagGTTACAGGAGCTTTAGCAGAGGATGGTATGGGGCTGGAGGAGATCACAAAGAGGGTCAGTGTCATTGCTAAGACCATGGgtatcttcagtgagggtaaagctgcagcagtggaccaagtagtgagccta #### Dak_ID2910_3 --> 2 - 1 Original Alignment gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctgtgaaacaactaagcatactttttctctaattttcaattataggtTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta Alignment from CESAR gtTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAg tgcagctgtgaaacaactaagcatactttttctctaattttcaattataggtTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAggtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta Alignment from Spaln_aa2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctgtgaaacaactaagcatactttttctctaattttcaattatagGTTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta Alignment from Spaln_nt2Genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctgtgaaacaactaagcatactttttctctaattttcaattatagGTTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta Alignment from Pairagon GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctgtgaaacaactaagcatactttttctctaattttcaattatagGTTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta Alignment from Exonerate_protein2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctgtgaaacaactaagcatactttttctctaattttcaattatagGTTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta Alignment from Exonerate_coding2genome GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctgtgaaacaactaagcatactttttctctaattttcaattatagGTTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta Alignment from GeneWise GTTTTATCGGGAAAGGGATGCTAACAGGTGTCATCGCAGGATCTGTGTTTGCCTCTCCTCCTGTGGGCAGCATCCTGGCAGCCATTAGAGCTGTGGCCCAGGCAGGCACAG tgcagctgtgaaacaactaagcatactttttctctaattttcaattatagGTTTTATTGGTAAAGGGATGCTTACAGGTATCATTGTAGGATTGGTGTTTGCCTCTCCTCCTGTGGGCAGCATCTTAGCAGCCATTAGAGCTGTGGCACAGGCAGGCACAGgtgggttgtgcttgtacagggaagtgtgatgtggttggatgggttgtgta #### Dak_ID2911_2 --> 0 - 1 Original Alignment AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCg ttaccctactctgagtctctacccactttcaattttcttctctattgtagAGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAagtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca Alignment from CESAR AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCg ttaccctactctgagtctctacccactttcaattttcttctctattgtagAGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAagtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca Alignment from Spaln_aa2Genome AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG ttaccctactctgagtctctacccactttcaattttcttctctattgtagAGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAAgtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca Alignment from Spaln_nt2Genome AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG ttaccctactctgagtctctacccactttcaattttcttctctattgtagAGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCCC---CTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAAgtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca Alignment from Pairagon ATGAGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG ttaccctactctgagtctctacccactttcaattttcttctctattgTAGAGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCCC---CTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAAgtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca Alignment from Exonerate_protein2genome AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG ttaccctactctgagtctctacccactttcaattttcttctctattgtagAGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAAgtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca Alignment from Exonerate_coding2genome AGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG ttaccctactctgagtctctacccactttcaattttcttctctattgtagAGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAAgtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca Alignment from GeneWise ATGAGTTCCAAGAAGATGGTGAATTCTGTGGAAGGGTGTGCTGATGATGCCCTTGCTGGGTTAGTAGCCTCTAACCCTGACTTGCAGCTCCTGCAAGGGCACCGTGTGGCCCTACGTTCTGACCTGGACACCCTCAAGGGCCGGGTAGCACTTCTGTCAGGTGGAGGCTCAGGCCATGAGCCTGCCCATGCCG ttaccctactctgagtctctacccactttcaattttcttctctattgtag---AGTTCAAAAACAATGTTGAACTCTGTAGAAGGATGTGCTGATGATGCC---CCTGGGTTAGTAGCCTCTAACCCTGACCTGCCGCTCCTACAAGGGCACCGTGTGGCCCTACATTCTGACCTGGAGACTGTCAATGCCCGTGTAGTACTTCTGTCAGGTGGAGGCTCAGGACATGAGCCTGCACATGCAAgtgagtattatttttcaaatcattaacaggggtgctggccagggccaaca #### Dclre1a_ID12121_6 --> 1 - 1 Original Alignment aTACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAg gttttctctgtcacctaattttgccagcactagagttctgcattctgcagaTACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCagtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca Alignment from CESAR aTACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAg gttttctctgtcacctaattttgccagcactagagttctgcattctgcagaTACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCagtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca Alignment from Spaln_aa2Genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG gttttctctgtcacctaattttgccagcactagagttctgcattctgcagATACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCAgtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca Alignment from Spaln_nt2Genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG gttttctctgtcacctaattttgccagcactagagttctgcattctgcagATACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCAgtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca Alignment from Pairagon ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG gttttctctgtcacctaattttgccagcactagagttctgcattctgcagATACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCAgtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca Alignment from Exonerate_protein2genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG gttttctctgtcacctaattttgccagcactagagttctgcattctgcagATACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCAgtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca Alignment from Exonerate_coding2genome ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG gttttctctgtcacctaattttgccagcactagagttctgcattctgcagATACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCAgtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca Alignment from GeneWise ATACTGCAGCCCAGAATATACCTTCCCGTCACAGCAGGAGGTTATCCAGTTTGCCATCAACACTGCCTTTGAGGCTGTAACTCTAAACCCACGTGCCCTTGTTGTCTGTGGCACTTACTGCATCGGAAAGGAGAAAGTCTTCCTAG gttttctctgtcacctaattttgccagcactagagttctgcattctgcagATACTGCAGCCCAGAATACACCTTCCCTTCGCAACAGGAAGTTATCCAGTTTGCAATCAACACAGCGTTTGAAGCTGTAACTCTGAACCCACGTGCCCTTGTAGTCTGTGGCACTTATTGCATCGGGAAGGAGAAAGTGTTCCTCAgtgagcgaacctgagatctaatttgtatgaacatgtgagaatgtttaaca #### Dclre1a_ID12124_3 --> 2 - 0 Original Alignment ggACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacaggaACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg Alignment from CESAR ggACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacaggaACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg Alignment from Spaln_aa2Genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacagGAACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg Alignment from Spaln_nt2Genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacagGAACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg Alignment from Pairagon GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacagGAACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg Alignment from Exonerate_protein2genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacagGAACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg Alignment from Exonerate_coding2genome GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacagGAACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg Alignment from GeneWise GGACTGGCTTCACTGTGGATGCTTTTCAGTACGGTGAGATCGAAGGCTGCACCGCCTACTTCCTCACACATTTCCATTCTGATCATTACGCCGGGTTGTCCAAGGACTTCACAAGGCCAGTCTATTGCAGCGAG gctggaattttcccacactgatgtgtgacaaccctttggtctcctcacagGAACAGGCTTTACTGTAGATGCTTTTCAGTATGGTGAGATTGAAGGTTGCACTGCATACTTCCTCACACATTTCCACTCCGATCATTATGCAGGGTTGTCCAAGGACTTTACACAGCCAGTATATTGCAGCGAGgtaagtttcatcactatgagctttataggacattatgattaagaatcgtg #### Ddb1_ID2920_5 --> 0 - 1 Original Alignment GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAG---------GAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGggtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct Alignment from CESAR GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTC---------AACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAg ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGggtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct Alignment from Spaln_aa2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGGgtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct Alignment from Spaln_nt2Genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTCAA---------CAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGGgtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct Alignment from Pairagon GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGGgtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct Alignment from Exonerate_protein2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGGgtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct Alignment from Exonerate_coding2genome GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAG---------AAGGAGTTCAACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGGgtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct Alignment from GeneWise GATCCTCAGGGGCGGCATGTGAAAACCTATGAGGTGTCTCTTCGAGAGAAGGAGTTC---------AACAAGGGCCCTTGGAAACAGGAGAATGTAGAAGCCGAAGCTTCAATGGTGATAGCAG ggaccttacaacctgaggcctattcaatgcctggtctcctctccccacagGATCCTCAGGGGCAACACATTAAGACTTACAAGGTGTCTCTTCAAGAGAAAGAGTTCAAAGAGTTCAACAATGGACCATGGAAACAGGAGAATGTAGAAGCTGAAGCTTCTATAGTAATGGCGGgtaagttgcttagatggtaggtttgatggagttctctgccacttcctcct #### Ddb1_ID2921_6 --> 2 - 0 Original Alignment tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagtcCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc Alignment from CESAR tcCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagtcCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc Alignment from Spaln_aa2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagTCCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc Alignment from Spaln_nt2Genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagTCCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc Alignment from Pairagon TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagTCCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc Alignment from Exonerate_protein2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagTCCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc Alignment from Exonerate_coding2genome TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagTCCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc Alignment from GeneWise TCCCAGAGCCTTTTGGAGGTGCCATCATCATTGGACAGGAATCAATCACCTATCATAACGGTGATAAATACCTGGCAATTGCTCCTCCTATCATTAAG agaccatttggaaagggtcccctttaatgggctcttgattgggccttcagTCCCAGAGCCCTTTGGAGGTGCCATTATCATTGGACAAGAGTCGATTACCTATCATAATGGTGATAAATATCTAGCAATTGCTCCTCCAATCATTAAGgtgagtaatactatctatgtttcattctgttctatctatgtgctgtcctc #### Ddb1_ID2923_8 --> 0 - 0 Original Alignment ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa Alignment from CESAR ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa Alignment from Spaln_aa2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa Alignment from Spaln_nt2Genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa Alignment from Pairagon ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa Alignment from Exonerate_protein2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa Alignment from Exonerate_coding2genome ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa Alignment from GeneWise ACCTCCATTGCTGAGTGCCTAACTTATCTTGATAATGGTGTTGTATTTGTCGGGTCTCGCCTAGGTGACTCCCAGCTCGTAAAG gtggccatgagggatgatgcccattctcgttatgaattgtgtttccacagACCTCCATTGCTGAATGCCTAACCTATCTTGACAATGGTGTTGTATTTGTTGGGTCTCGTCTGGGTGACTCCCAGCTTGTCAGGgtgagggtctatcacctctgtgcgtttctcttattatcaattgttgaaaa #### Ddb1_ID2927_12 --> 1 - 0 Original Alignment aGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagaGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt Alignment from CESAR aGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagaGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt Alignment from Spaln_aa2Genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagAGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt Alignment from Spaln_nt2Genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagAGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt Alignment from Pairagon AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagAGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt Alignment from Exonerate_protein2genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagAGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt Alignment from Exonerate_coding2genome AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagAGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt Alignment from GeneWise AGTTCTCATGCTAAACGGAGAGGAAGTGGAAGAGACAGAACTGATGGGCTTTGTGGACGATCAGCAGACTTTCTTTTGTGGCAACGTGGCTCATCAGCAACTTATCCAG gcagtagtgcaaagttctcaatcctaacacatgtgctcaaccctgtccagAGTACTCATGCTAAATGGAGAAGAGGTGGAAGAGACAGAACTGATGGGCTTTGTGGATGATCAACAGACTCTCTTTTGTGGCAATGTGGCTCATCAACAACTTATTCAAgtgagtgataaggaacatcacttcactgcaattttgtataaaactgtagt #### Ddb1_ID2934_19 --> 0 - 1 Original Alignment GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAA---GAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagcagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAA---GAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAggtgagttaggactccttaagattttctgcccataggacagccttaatgct Alignment from CESAR GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAg ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagcagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAggtgagttaggactccttaagattttctgcccataggacagccttaatgct Alignment from Spaln_aa2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagcagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAGgtgagttaggactccttaagattttctgcccataggacagccttaatgct Alignment from Spaln_nt2Genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagcagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAGgtgagttaggactccttaagattttctgcccataggacagccttaatgct Alignment from Pairagon GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagcagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAGgtgagttaggactccttaagattttctgcccataggacagccttaatgct Alignment from Exonerate_protein2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagcagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAGgtgagttaggactccttaagattttctgcccataggacagccttaatgct Alignment from Exonerate_coding2genome GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagcagGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAGgtgagttaggactccttaagattttctgcccataggacagccttaatgct Alignment from GeneWise ---GCCCTGTCCAGCAGCGTCAGCTCCAGCAAACTTTTCTCCAGCAGTACGGCTCCTCACGAGACCTCCTTTGGAGAAGAAGTGGAGGTGCACAACCTCCTCATCATTGACCAGCACACCTTTGAAG ttttaatgggatgagtgcattttctttagcatgtcttcttccatgagCAGGCTCTGTCTAGTAGCATCAGTTCCAGCAAACTTTTTTCCAGCAGTACTGCCCCTCATGAAACATCCTTTGGAGAAGAAGAAGAGGTCCACAACCTCCTGATCAATGACCAGCACACATTTGAAGgtgagttaggactccttaagattttctgcccataggacagccttaatgct #### Ddb1_ID2938_23 --> 0 - 2 Original Alignment ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACag tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACaggtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca Alignment from CESAR ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACag tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACaggtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca Alignment from Spaln_aa2Genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACAGgtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca Alignment from Spaln_nt2Genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACAGgtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca Alignment from Pairagon ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACAGgtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca Alignment from Exonerate_protein2genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACAGgtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca Alignment from Exonerate_coding2genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACAGgtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca Alignment from GeneWise ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG tactttcccacctacacctctccgacataatatttcctatttctttccagATTGCCCGAGACTTTAATCCAAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCGGAAAATGCCTTTAACTTGTTTGTGTGTCAAAAGGACAGgtatgtggttagtataccactagaagttgtgcgagacctctaggcttgca #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcaggtATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAggtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcaggtATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAggtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga #### Dkk1_ID6483_2 --> 0 - 1 Original Alignment CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACcgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa Alignment from CESAR CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACcgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa Alignment from Spaln_aa2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACCgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa Alignment from Spaln_nt2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGC---TGTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACCgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa Alignment from Pairagon CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGC---TGTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACCgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa Alignment from Exonerate_protein2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACCgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa Alignment from Exonerate_coding2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACCgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa Alignment from GeneWise CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaagttggcaactagcctgatctagctgaaatttacatatttttttacagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCGGATAAATATTGTTCCAGCCCCAGCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAGGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAGAACCgtgagaatgccccagtacctgtcttttatttaacaagttctacctagcaa #### Dmrt1_ID5475_2 --> 0 - 1 Original Alignment GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAggtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt Alignment from CESAR GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAg tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAggtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt Alignment from Spaln_aa2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt Alignment from Spaln_nt2Genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt Alignment from Pairagon GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt Alignment from Exonerate_protein2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt Alignment from Exonerate_coding2genome GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt Alignment from GeneWise GTGGCCCTGAGAAGACAGCAGGCCCAGGAAGAAGAACTGGGTATCAGCCACCCAATTCCGCTGCCCAGCGCAGCCGAGCTCCTGGTCAAAAGAGAGAATAATGCCAGCAACCCGTGCCTGATGGCCGAGAACAGCAGCTCTGCCCAGCCCCCACCGGCCAGCACCCCAACCCCCGCTGCCTCAG tagaactgctctgaagaggtttaacttaatctgaatacgatgtcttgtagGTGGGTTTGAGGAGACAGCAGGCACAGGAAGAGGAACTTGGCATCAGCCACCCAATACCTCTGCCAAGTGCAGCTGAACTCCTGGTTAAGAGAGAGAATAATGCTAGCAACCCATGCCTGATGGCTGAGAACAGCAGCTCAGCCCAGCCCCCACCAGCCAGTACCCCAACCCCTGCTGCCTCAGgtaagtaaaggatgtgcctatggaacccaaccaagggaagcaggtgaagt #### Dmrt1_ID5483_3 --> 2 - 0 Original Alignment agGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagagGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg Alignment from CESAR agGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagagGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg Alignment from Spaln_aa2Genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagAGGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg Alignment from Spaln_nt2Genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagAGGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg Alignment from Pairagon AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagAGGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg Alignment from Exonerate_protein2genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagAGGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg Alignment from Exonerate_coding2genome AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagAGGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg Alignment from GeneWise AGGGACGCATGGTCATCCAGGATATTCCTGCTGTCACCAGCAGAGGGCATATGGAGAACACATCTGACCTGGTATCAGACCCCGCCTACTACAGCAGCTTTTACCAGCCTTCTCTGTTTCCTTACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCCTTGTCTGCTGAGTCCTCCTCAGGGGAGGTGGGGAATTCCCTCGGGGGATCCCCCGTGAAGAACAGCCTGCGGAGTCTCCCAGCACCTTACGTGCCTGCTCAGACTGGAAACCAGTGGCAG ccttaaccaaatctcttcactgtgctggttttcttctctcacttttgtagAGGGACGCATGGTCATACAGGACATTCCAACTGTAACAAGCAGAGGAGATATGGAGAACACATCTGACCTGGTCTCAGATCCTGCTTATTACAGCAGCTTTTATCAGCCCTCTTTATTTCCATACTACAACAATCTGTACAACTACCCCCAGTATTCCATGGCTTTATGTGCTGAATCCTCATCAGGGGAGGTGGGGAACTCCCTTGGGGGATCCCCTGTAAAAAACAGTATACGAGGCTTGGCAGCACCTTATGTACCCGCTCGGACGGGAAACCAGTGGCAGgtgagtcccaagaatacttaggaaatataggcctgatagaagagtagacg #### Dmrt1_ID5487_4 --> 0 - 1 Original Alignment ATGAAGACCTCAGAGAGCCGCCACCCAGTGAGC---TCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTg tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTggtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga Alignment from CESAR ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTg tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTggtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga Alignment from Spaln_aa2Genome ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTGgtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga Alignment from Spaln_nt2Genome ATGAAGACCTCAGAGAGCCGCCACCCAGT---GAGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTGgtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga Alignment from Pairagon ATGAAGACCTCAGAGAGCCGCCACCCAGT---GAGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTGgtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga Alignment from Exonerate_protein2genome ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTGgtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga Alignment from Exonerate_coding2genome ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTGgtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga Alignment from GeneWise ATGAAGACCTCAGAGAGCCGCCACCCAGTG---AGCTCCCAGTACCGGATGCACTCATACTACGGGCCTCCCTCCTACCTGGGCCAGAGCATGTCCCAGATCTTTACCTTCGAGGAAGGCCCCTCCTACTCAGAAGCCAAAGCCAGTG tgcactcactaaaactacaataaagactatggttttcctttcccttctagATGAAGACCTCAGAGAGCCACCATCCAGTTAAGAGCTCCCAGTACCGGATGCAGTTATACTATGGGCCTCCCTCTTACTTGGGACAAAGCATGTCCCAAATCTTTACATTTGAGGAAGGTCCCTCCTATTCAGAAGCCAAAGCAAGTGgtaagttgtttctctggtggggtgtcaggttgggtgttgggatataatga #### Dnajc4_ID1964_4 --> 1 - 2 Original Alignment cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag accctctactcaccttttattccttcttcctctgtgtctttgttttatagcTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCaggtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag Alignment from CESAR cTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCag accctctactcaccttttattccttcttcctctgtgtctttgttttatagcTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCaggtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag Alignment from Spaln_aa2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG accctctactcaccttttattccttcttcctctgtgtctttgttttatagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag Alignment from Spaln_nt2Genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG accctctactcaccttttattccttcttcctctgtgtctttgttttatagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag Alignment from Pairagon CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG accctctactcaccttttattccttcttcctctgtgtctttgttttatagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag Alignment from Exonerate_protein2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG accctctactcaccttttattccttcttcctctgtgtctttgttttatagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag Alignment from Exonerate_coding2genome CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG accctctactcaccttttattccttcttcctctgtgtctttgttttatagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag Alignment from GeneWise CTCCTGGGAACCCCCCAACGCTCAATACTGGGCCCAGTTCCACAGTGTGAGGCCGCAGGGGCCGGAGTCAAGGAAGCAGCAGCGTAAACACAACCAGCGGGTCCTGGGGTACTGCCTCCTGCTCATGGTGGCAGGCATGGGCCTGCACTATGTTGCCTTCAG accctctactcaccttttattccttcttcctctgtgtctttgttttatagCTCCTGGGAACTACCCAACACTGAGTACTGGGCTAAGTTCCACAGTGTGAGGCCACAGGGGCCGGAGTCAAGGAAGCAACACCATCAATACAACCAGCAAGTTCTAGGTTACTGTCTACTGCTCATGGTGGCAGGTATAGGATTGCACTATGTTGCCTTCAGgtgagcccctttgtctccttggtttacggggttgtgggtcaggtttgaag #### Dnmbp_ID8858_8 --> 2 - 0 Original Alignment tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagtgATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac Alignment from CESAR tgCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagtgATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac Alignment from Spaln_aa2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac Alignment from Spaln_nt2Genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac Alignment from Pairagon TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac Alignment from Exonerate_protein2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac Alignment from Exonerate_coding2genome TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac Alignment from GeneWise TGCTTAAGTACCGCAAAGGGGATGAAGATAGCCTGATGGAAAAGATCTCCAAGCTGAACATACACTCCATCATCAAGAAGTCCAGCCGCGTTAGCAGCCACCTCAAACACCTCACTGGCTTCGCTCCGCAG gtgggggaagggcgaaggactggtgaccacttttttttttctttttgaagTGATTAAGTACCGCAAAGGTGATGAAGATAGTCTGATGGAAAAGATTTCCAAGCTCAATATTCACTCAATCATCAAGAAGTCCAGCCGTGTTAGCAGTCACCTCAAACACCTCACTGGCTTTGCTCCACAGgtaagatgtgatttcacttatcagggcgcatccccatatacagaaggtac #### Dnmbp_ID8861_5 --> 0 - 1 Original Alignment GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAg aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAggtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat Alignment from CESAR GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAg aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAggtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat Alignment from Spaln_aa2Genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAGgtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat Alignment from Spaln_nt2Genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAGgtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat Alignment from Pairagon GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAGgtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat Alignment from Exonerate_protein2genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAGgtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat Alignment from Exonerate_coding2genome GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAGgtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat Alignment from GeneWise GTACCAAACGTTGATTTTGAAGGACTTTTTGGAAATATGCAAACAGTGATTAAAGTCTCAAAGCAATTGTTGGCGGCCTTGGAAATCAGCGATGCTGTAGGTATGAGCTCATGCGATTGTTTGGTCCCAG aggtgtcacccagttcacctgcttgtaaccatcccctctgtcctccatagGTACCAAACGTCGATTTTCAAGGACTTTTTGGCAATATGCAAAAAGTGGTTGCAGTTTCTAAACAATTGTTGGCCACCCTGGAAATTAGTGATGCTGTGAGAATGAGCTCATGTGAATGTCTACATCCAGgtatgttagaagagagcaaaccaaccttctatatttatgtgataaggaat #### Dnmbp_ID8865_3 --> 2 - 1 Original Alignment gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagaaGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAT---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGAC---CGCCCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAggtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga Alignment from CESAR gaGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAg gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagaaGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAT---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAggtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga Alignment from Spaln_aa2Genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagAAGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAT---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAGgtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga Alignment from Spaln_nt2Genome A-GACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagAAGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACC------ACCCATTCATCCCAATGTGCAGAAGTGCCAAC---ATCTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGACC---GCCCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAGgtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga Alignment from Pairagon GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagAAGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACC------ACCCATTCATCCCAATGTGCAGAAGTGCCAAC---ATCTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGACC---GCCCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAGgtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga Alignment from Exonerate_protein2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagAAGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAT---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAGgtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga Alignment from Exonerate_coding2genome GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagAAGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAT---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAGgtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga Alignment from GeneWise GAGACCTGGTGATTCTCGACGACAGCGCTCCCACTGCAGGATGGCTGCAGGGCCGAAGCTGCTGGGGCGCTTGGGGCTTCTTCCCATCCTCCTGTGTCCAGGAGCTCTGCCTCTCCTCTCGGAGCCGACGCTGGCACGCACAGAGTGCGTTGCTTCAGGCCCCAGAGTACTCCCTGGGACAAGCACGGGCCCTCATGGGCCTTTCTGCCCAGTTGGACGAGGAGTTGGATTTCAGGGAAGGAGACCTGATCACCATTATCGGGGTTCCTGAGCCGGGCTGGTTTGAGGGAGAGTTAGAGGGTCGGAGGGGCATTTTCCCAGAAGGTTTTGTAGAGCTGCTGGGGCCCCTAAGGACTGTGGATGAGTCCGTAAACTCCAGAAGTGGAGATGACTCCGCTGTCAACGGTGAGGTGGATGTCCCTCCAGAAGAAGCAGAGAGTGGAGGCGACGAGGACGACCAGCAGTCGGGGACCTATGGAATCGCCCTCTACAGATTCCAAGCCCTGGAGACGAATGAGTTGGACTTTGAGGTAGGGGACAGAATTCAAATACTGGGGACCTTGGAGGATGGCTGGCTGGAAGGATGTCTGAAGGGCAAGACAGGGGTCTTTCCCCATCGCTTTGTGAAGTTATGTCCTAGCAACAGGACAGAGGAAACCACGGCTCAGCCCCAGGAAAGCAGTTTCCCCAAGGACTCTGAAAGCTCTGTGGGCAAGTCAGGGGACTCCGTGGTGGAGGAAGCAAGACAGGAACCATGGGAGTGTGAAGAAGAAAGACCTGACTATGATCTCCCAGGACAAGCCTCCGTGCCCCAAGATCACGTAGCACCCGAGTGGACTGGAGATACGATCTCAGGTCAGGATAAAGATGCTTCAGGGAGCTCTCCTGATGTGGATCTTGAAAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCAGAGGAAGTCAACGGTGTTTCTTCCCAGCCTCAGGTACCTATTCATCCCAAAGTGCAGAAGAGCCAACACTATCTAACAGCAGGAGGGAGCCACCAAACCTCTGACCCATTCTCTGAGCTTGTCCCACTAGAAGCCAGGACCAGAGACTACTCCAGCCTGCCTCCTAGAAGAACATACGCCCAAGGTTGGTCATTCCAGAAGCCAGCGTCCCACCTCCAGAGGGCCTCTTCCCTTACAGCCTCAAGGCTAGACAGACCCAGCCACTTTTGCCATCCAGCCATGGCCAGCTATGCTCAGAAGCACCAAACATCTACAGAAAATACTGCCAGCCTCCACGATCCACCAGAGAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCACAGATATAACCACAGCGTCACAGGGGGACAGCCTGGACCTAGATTCCAAGTTGACCCAACAGCTGATAGAGTTTGAGAAGAGTCTGTCAGGGCCCAGCACAGAGCCAGAGACGATTGTACGCCGCTTTTCAATCATGGACTTTTACTCTGAGAAGGATATCGTGAGAGGCTCCTCAAATTCACTACCCTCACAGGCTTTCCCCGAGAGGAGAAAGACCCTGAGGCCACCACCTCCTAGACCCCGTACCCCAACACCCATTTCCTCCCACTTGCTAGTTGACCAGAGCCCGAAACCTGTACCCACCTTGGTTGTGCGGCCCTCCCGACCAGCTCCTCTGCCTCCTCCTGCCCAGCAGAGGATGAATACGGCCTCCCCCAAGCCCACCTCCTGTGCCCATCCTGGCTGGGAGGCCCCAGAGAAGGAGGACTCTGAGCACATGGAGAAGAGCCCAGCCCAGACTTTTCCGTGCCCCTCCATGCTGGCAAGGATCCGGGACGTGGAACAGGACCTGGACACGTGTACCAGGGCTCAGGAAGAGCTGAACTTGCTGTTGGAGGAAAAGCAAGATGACCCGTCGAGGGCAGAGACTCTTGAGACTCTCAGATCCTACGAGAGCACCATTCAGAGCCTGACCCTGGAGCTTCAGCAGCTGAGAG gttggtacctgactgtctttgatgttcggagtaggtttgtctctgtctagAAGACTTGGCAATTCTTGATGACAGTGCTCCAACAGCAGGCTGGCTGCAGGGGCGTAGCTGCTGGGATGCTTGGGGCTTCTTCCCATCCTCCTGTGTTCAGGAACTCTGCCTTTCCTCACGGAGCCAACGCTGGCATGCCCAAGGGGCATTACTACAGCCCCCAGAATACTCCCTGGGGCAGGCATGTGCTCTGATGGGCCTATCTTCCCAGTTGGATAAGGAGTTGGATTTCAGGGAAGGAGACCTAATTACTATTATTGGTGTTCCTGAGCTGGGCTGGTTTGAGGGAGAGTTAGAGGGCTGGAGGGGTGTTTTTCCAGAGGGCTTTATAGAAGTATTGGGACCCCTAAGGACTGTGGATAAGTCTGTAAACTCAAGAAGTGGAGATGACTCAGCAGTCAATGGTGAGGTAGATGTCCCCCCAGAAGAGGCAAAAAGTGGAGGTGATGAGGATGATCAGCAATTAGGGACCTATGGTATTGCCCTCTACAAATTCCAAGCCCTGGAGATGAATGAACTGGACTTTGAGGTTGGGGATAGGATACAGATACTGGGGACTTTGGAGGATGGCTGGCTAGAAGGGTGTCTGAAGGGTAAAACAGGGGTTTTTCCCCATCACTTTGTAAAATTATGTCCTAGCAACAGGTCTGAGGAAACCACAGCGCAGCCCCAGGAAAGTAGCTTCTCCAAGGACTTTAAAAGCTCTGTGGGCAAGTCAGGTGACTCAGTGGTGGAGGAAGCAAGACAGGAATCATGGGGTTGTGAGGAAGAAAGACCTGACTACGATCTCCCTGGGCAAGCCTCTGTGCCCCATGATCATGTGACACCTGAATGGACTGGGGATACAATCTCGGGTCAGGATAAGGATGCTTCAGGCAGCTCTCCTGATGTTGATCTCAAGAGGCCTCTTGCTAAAGACCTTTCCACACCTGACCCCTCTGAGGAAGTAAATGGTGTTTCTTCTCAACCA------CCCATTCATCCCAATGTGCAGAAGTGCCAACAT---CTAACACCAGGGGGGAGCCACCAAACCTCTGACCCATTTTCCAAACTTGTCCCATTAGAATCCAGAGCCCGAGACTACTCTAGCTTGCCTCCTAGAAGGCCATATGCTCAGGGTTGGTCATTCCAGAAGCCTGTGTCCCACCTTTTGAGGGCTTCTTCCCTTACAGCCTCAAGGCTTGACAGACCCAGCCACTTTTGCCATCCAACCATGGCTGGCTATACGCAGAAGCATCAGACCTCTATGGAGAATACTGCACGTCTCCATGATCCCCCAGAAAGACCAGAGAGAAGGCCTGGCTTACAAGACAGGGGGCCTGCCAATGATATAACTGCTGCCTCACAGGGGGACAGCCTGGATCTAGATACTAAGCTGACCCAGCAACTCATAGAGTTTGAGAAGAGTCTGTCAGGGACAAGTACAGAGCCAGAAACAATTGTTCGCCATTTCTCAATTATGGACTCTTACTCTGAGAAAGATATTGTAAGAGGCTCATCAAATTCCCTAACTACACAAGCATTCCCTGAGAGGAGAAAGACCCTCAGGCCACCACCCCTTAGACCCCGTACCACTACACCGATTGCTTCCCACTTGCTAGTTGACCGC---CCAAAACCTGTACCTACCTTGGTCGTTCAGCCCTCCCGGCCAGCCTCACTGCCTCCACCTGCCCAGCAGAGAATGAACACAGCTTCACCTAAGCCCACCTCTTGTGCGCATCCAGTCTGGGAGGCCCCAGAAAAGGGAGACTCTGAGCATATGCAAAAGAGCCCAGCCCGCACATTCCCATGCCCCTCCATGCTGGGGAGGATTCGGGATGTAGAAGATGATCTGGACACG---ACCAGGGCTCAGGAAGAGCTGAACTTGCTTTCAGAGGAAAAGCAAGATGACCCATTGAGGGCAGAGACTCTTGAGACCCTAAAATCCTATGAGAGCACCATCCAGAGCCTGACTTTAGAGCTTCAGCAACTAAGAGgtgagtatgaatacacaacgctcttactgcatgagaaactaccttgtaga #### Dntt_ID8076_2 --> 1 - 0 Original Alignment tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagtGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGG---------CAA------------AGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca Alignment from CESAR tGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagtGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGCAA---------------------AGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca Alignment from Spaln_aa2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGG---------------------CAAAGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca Alignment from Spaln_nt2Genome TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGC------------------AA---AGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca Alignment from Pairagon TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGGC---------------------AAAGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca Alignment from Exonerate_protein2genome AGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagtgactcagtcagccacattgtagtggagaacaactcagggacagacatccttgaatggcaaAGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca Alignment from Exonerate_coding2genome AGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagtgactcagtcagccacattgtagtggagaacaactcagggacagacatccttgaatggcaaAGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca Alignment from GeneWise TGATTCGGTCACCCACATTGTGGCAGAGAACAACTCAGGGTCAGACGTCCTGGAGTGGCTCCAGCTGCAGAACATCAAAGCCAGCTCCGAGCTCGAACTCTTGGACATCTCCTGGCTCATCGAATGCATGGGAGCTGGGAAGCCAGTGGAGATGATGGGGAGACATCAGCTTGTT cctatgaacagcatcacaccatggatattaaatttaaacttgtgttctagTGACTCAGTCAGCCACATTGTAGTGGAGAACAACTCAGGGACAGACATCCTTGAATGG---------------------CAAAGTTGCAAGCTGGAGCTCTTGGAGATCTCCTGGCTCATTGAATGTATGGGAGCTGGGAAGCCATTAGAGATGATGGGGAGGCATCAGCTGGTTgtatcgcttgcctttgctgggtggacaccagaattgacacaggataaaca #### Dntt_ID8082_8 --> 1 - 0 Original Alignment gGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcaggGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGATCAGCTG---CTGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt Alignment from CESAR gGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcaggGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGCTGCTGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt Alignment from Spaln_aa2Genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcagGGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGCTGCTGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt Alignment from Spaln_nt2Genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcagGGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGATCAGCT---GCTGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt Alignment from Pairagon GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcagGGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGATCAGCTGC---TGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt Alignment from Exonerate_protein2genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcagGGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGCTGCTGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt Alignment from Exonerate_coding2genome GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcagGGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGAT---CAGCTGCTGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt Alignment from GeneWise GGGTAAGATGACTGGACATGATGTAGACTTTCTAATTACCAGCCCAGAAGCCACAGAGGATGAAGAGCAGCAGCTCTTGCATAAAGTGACAGACTTTTGGAAGCAGCAG aacataagacgccaccagtccacctgattagctgccttttgattttgcagGGGCAAAATGACTGGGCATGATGTTGACTTTCTTCTTACTAGCCCAGAAGCTACAGAAGATGAGGATCAG---CTGCTGCATAAAGTGACAGATTTTTGGAAGCGGCAGgtaagtagcacagttctaaaacagctgacataaattagtatcgggatgtt #### Dntt_ID8083_9 --> 0 - 0 Original Alignment GGGTTGCTTTTGTACTGCGACATCTTAGAGTCAACC---TTTGAAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGA---AGCTGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCTC---TGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag Alignment from CESAR GGGTTGCTTTTGTACTGCGACATCTTAGAGTCAACCTTT---GAAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGA---AGCTGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCTC---TGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag Alignment from Spaln_aa2Genome GGGTTGCTTTTGTACTGCGACATCTTAGAGTCAACCTTT---GAAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGA---AGCTGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCTC---TGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag Alignment from Spaln_nt2Genome GGGTTGCTTTTGTACTGCGACATCTTAGAGTCAACCTTTG---AAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGAA---GCTGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCT---CTGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag Alignment from Pairagon GGGTTGCTTTTGTACTGCGACATCTTAGAGTCAACCT---TTGAAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGAA---GCTGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCTC---TGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag Alignment from Exonerate_protein2genome GGGTTGCTTTTGTACTGCGACATCTTAGAGTCA---ACCTTTGAAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGA---AGCTGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCTC---TGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag Alignment from Exonerate_coding2genome GGGTTGCTTTTGTACTGCGACATCTTAGAGTCA---ACCTTTGAAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGA---AGCTGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCTC---TGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag Alignment from GeneWise GGGTTGCTTTTGTACTGCGACATCTTAGAGTCA---ACCTTTGAAAAGTTCAAGCAGCCCAGCAGGAAGGTGGATGCTCTCGACCATTTCCAGAAATGCTTCCTGATTCTGAAGCTGGACCACGGGAGAGTGCACAGCGAGAAGAGCGGCCAGCAGGAAGGAAAGGGCTGGAAGGCCATCCGTGTAGATCTGGTCATGTGCCCCTATGATCGCCGGGCCTTCGCCCTGCTTGGATGGACCGGCTCCAGA taactcccagcttcccaagacaatttacttgaatttgattctctctgtagGGGTTGCTTTTGTACTGTGACTTATTAGACTCAGCATCTGCTGAAGATTTTAGACAGCCCAGCAGGAAGGTGGATGCCCTTGATCACTTCCAAAAATGCATCCTGATTCTGAGAATTGAATATGGGAGAGTCCACAGTGAGAAGAGCGACCAGCAGGAAGGAAGC---TGGAAGGCTATTCATGTAGACCTAATCATTTGCCCCTATGACCACCGGGCCTTTGCTCTGCTC---TGGACAGGCGCCAGAgtaaagtgtccccagcttccttctaagtctttcatgcattgctatgagag #### Dock8_ID5376_2 --> 1 - 0 Original Alignment gTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatctgtccctatctccttccaggTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc Alignment from CESAR gTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatctgtccctatctccttccaggTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc Alignment from Spaln_aa2Genome GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatctgtccctatctccttccagGTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc Alignment from Spaln_nt2Genome GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatctgtccctatctccttccagGTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc Alignment from Pairagon GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatctgtccctatctccttccagGTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc Alignment from Exonerate_protein2genome GTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatctgtccctatctccttccagGTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc Alignment from Exonerate_coding2genome TTCGCGCTCAAGATCAACAGGTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatCTGTCCCTATCTCCTTCCAGGTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc Alignment from GeneWise TTCGCGCTCAAGATCAACAGGTATTCATCGTCAGAAATAAGGAAGCAGTTTACGCTCCCACCCAACCTCGGACAGTACCATCGGCACAGTATCAGTACATCTGGTTTCCCCTCTCTTCAGCTA taagttagttggaactagacacttcttgatCTGTCCCTATCTCCTTCCAGGTACTCATCATCAGAAATAAGAAAGCAATTTACACTCCCACCCAACCTTGGACAATACCATCGGCACAGTATCAGTACATCTGGGTTCCCATCCCTTCAGTTAgtaaggtgatttttaggtctagggggtctgccattcaaaactttaatacc #### Dock8_ID5397_18 --> 0 - 0 Original Alignment TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg Alignment from CESAR TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg Alignment from Spaln_aa2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg Alignment from Spaln_nt2Genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg Alignment from Pairagon TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg Alignment from Exonerate_protein2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg Alignment from Exonerate_coding2genome TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg Alignment from GeneWise TGGCTGCCGATTCTGTTAAACGAACGTCTTCAAACCGGATCCTACTGTCTGCCTGTTGCCTTGGAAAAACTACCACCCAACTACTCCATACATTCTGCTGAG aatctctgtgccaactacttgtattcatagttatatcttaatgtttttagTGGTTACCAATTCTGTTAAATGAACGCCTCCAAACCGGATCTTACTGTCTGCCTGTTACCCTGGAAAAACTCCCACCCAACTACTCTATTCATTCAGCTGAGgtaattagcaatgatgctttagtcaagcaaccagccctgccataccactg #### Dock8_ID5400_21 --> 2 - 1 Original Alignment caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagcaAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAggcaagtcttggttgagggggtggcaggggggctgaagttgggattaggaa Alignment from CESAR caAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAg aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagcaAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAggcaagtcttggttgagggggtggcaggggggctgaagttgggattaggaa Alignment from Spaln_aa2Genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagCAAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAGgcaagtcttggttgagggggtggcaggggggctgaagttgggattaggaa Alignment from Spaln_nt2Genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagCAAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAGgcaagtcttggttgagggggtggcaggggggctgaagttgggattaggaa Alignment from Pairagon CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagCAAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAGgcaagtcttggttgagggggtggcaggggggctgaagttgggattaggaa Alignment from Exonerate_protein2genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagCAAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAGgcaagtcttggttgagggggtggcaggggggctgaagttgggattaggaa Alignment from Exonerate_coding2genome CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAG aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagCAAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAGgcaagtcttggttgagggggtggcaggggggctgaagttgggattaggaa Alignment from GeneWise CAAACTTCTCCCAGTTTGCCTTCGAGTCTGTGGTGGCCATTGCCAATAGCCTGCACAACAGCAAGGACCTGAGGAAGGACCAGCACGGGAGGAACTGCCTTCTGGCCTCCTACGTGCACTACGTGTTCCGGCTGCCGGAACTGCACAGGGATACATCCAAGTCAGGT-- aaagcttcaagtcttgacaaacagtctgtgtctgtttttctctatcacagCAAACTTCTCCCAATTTGCCTATGAGTCAGTAGTTTCCATTGTCAATAGCTTACATAACAGCAAGGACTTGCGTAAGGACCAGCACAGCAGGAATTGTCTCTTGGCCTCATATGTGCAATATGTGTTCCGTCTACCAGAACTGCAAAGGGACACATCCAAGTCAGGCAAgtcttggttgagggggtggcaggggggctgaagttgggattaggaa #### Dock8_ID5401_22 --> 2 - 0 Original Alignment gtGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcaggtGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg Alignment from CESAR gtGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcaggtGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg Alignment from Spaln_aa2Genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcagGTGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg Alignment from Spaln_nt2Genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcagGTGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg Alignment from Pairagon GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcagGTGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg Alignment from Exonerate_protein2genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcagGTGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg Alignment from Exonerate_coding2genome GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcagGTGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg Alignment from GeneWise GTGGCCCCACCACCGTAGTCCCCGACCCCCGATACCACACATATGGACGCACATCTGCCGCTGCAGTGAGTTCAAAGCTGATGCAGGCCCGTGTGATGAGCAGCAGCAACCCAGACCTGACTGGGTCACACTGTGCAGCCGATGAGGAAGTTAAGAACATCATGTCTTCAAAG gctgctggctctgtccatcaattgctggctagctggcttctgtcctgcagGTGGTCCCACCACAGTAGTACCTGATCCCAGACACCGCACATACGGACACACATCTGCTGCAGCAGTAAGGTCAAAATTGATGCAGGCCCATGTGATGAGTAGCAGGAACCCAGACCTTACAGGGTTACACTGTGCAACTGATGAGGAAGTTAAAAATATCATCTCTTCGAAGgtatgtgcagggggaaggggtatatgtggttttgttatgctaccagatcg #### Dock8_ID5402_23 --> 0 - 0 Original Alignment ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac Alignment from CESAR ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac Alignment from Spaln_aa2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac Alignment from Spaln_nt2Genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac Alignment from Pairagon ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac Alignment from Exonerate_protein2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac Alignment from Exonerate_coding2genome ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac Alignment from GeneWise ATTGCCGATCGCAACTGCAGCCGGATGTCTTACTATTGCTCTGGCAATAGTGATGCGCCAGGTTCAACTGCAGCCCCAAGACCAGTCAGCAAAAAG aagacaagttctgctcatgatcctcaggactctctcatctgctttcacagATTGCTGATCGCAACTGCACCCGGATGTCTTATTATTGTCCGGGCAACAGTGAAGTGCTGGGTTCAACTGCTGCCCCAAGACCAGTCAGTAAAAAAgtgagaaactcagtggaagtagaatagcttcacgccaaagggcacccaac #### Dock8_ID5408_27 --> 0 - 0 Original Alignment CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag Alignment from CESAR CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag Alignment from Spaln_aa2Genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag Alignment from Spaln_nt2Genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag Alignment from Pairagon CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag Alignment from Exonerate_protein2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag Alignment from Exonerate_coding2genome CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag Alignment from GeneWise CTGTCAGCCAAGCTGAATATCCTTCCAACGCTCATCTCCATGCGGCTGGAATTCCTGAGGATCCTCTGCAGCCATGAGCACTACCTCAACTTGAACCTCCTCTTCATGAATACCGACACCGCACCAGCATCTCCCTGCCCCTCCATATCCTCCCAG aaattgtagtcttattctagacatccctgcagctttcctctgtttttcagCTGTCAACCAAGCTGAATATCCTCCCAATACTCATATCCATGTGGCAGGAGTTCTTAAGAATTATCTGCAGCCATGAACACTACCTCAACTTGAACCTCCTCTTTATGAATACAGACACTGCACCTGCATCTCCCTGTCCCTCAACATCATCCCGGgtaagatactaactagaggacagggatgaagtccctgtgtcatggagtag #### Dock8_ID5409_28 --> 0 - 2 Original Alignment AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATgg tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATgggtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc Alignment from CESAR AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATgg tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATgggtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc Alignment from Spaln_aa2Genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc Alignment from Spaln_nt2Genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc Alignment from Pairagon AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc Alignment from Exonerate_protein2genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc Alignment from Exonerate_coding2genome AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc Alignment from GeneWise AACTCGAGTTCCTGCTCCAGTTTCCAGGACCAAAAGATTGCCAGCATGTTCGATCTGACCCCGGAGTACCGGCAGCAGCACTTCCTTACAGGGCTGCTCTTCACGGAGCTGGCTGTTGCCCTGGATGCTGAGGGGGATGG tccaaagacttatgttccaatagttgtgaacctgtgttctggctcactagAATTCAAGCTCTTGCTCCACTTTCCAGGACCAAAAGATTGCCAGCATGTTTGATCTGACTGCTGAATACCGACAGCAACACTTCCTTACAGGGTTGCTCTTCGCAGAGCTGGCTGTTGCCCTAGATGCTGAGGGTGATGGgtgagtgtctgctatccaagattgaacctgaaattgaaggtgttatctcc #### Dock8_ID5417_35 --> 0 - 0 Original Alignment GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca Alignment from CESAR GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca Alignment from Spaln_aa2Genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca Alignment from Spaln_nt2Genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca Alignment from Pairagon GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca Alignment from Exonerate_protein2genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca Alignment from Exonerate_coding2genome GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca Alignment from GeneWise GCAAGCTCCGCCCTGGACTGTAAAGACAGCCTGCTGGGAGGTGTCCTCCGGGTCCTGGTGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTCGCAACCCTCCGAGCCCTCATCGCCAAG ttgctcatctctgtgatcttgctcatcagtgttctggggaattctcgtagGCAAGCTCTGCCCTTGACTGTAAAGACAGCCTGTTGGAAGGTGTCCTCCGAGTCCTGGAGAATTCTCTGAGCTGTGACCAGAGCACCACCTACCTGACTCACTGTTTTGCAACCCTCCGAGCCCTCATTGCCAAGgttcgccttggggactttgccacttagttgtgctgggagacaccaaggca #### Dock8_ID5419_37 --> 0 - 0 Original Alignment AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat Alignment from CESAR AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat Alignment from Spaln_aa2Genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat Alignment from Spaln_nt2Genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat Alignment from Pairagon AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat Alignment from Exonerate_protein2genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat Alignment from Exonerate_coding2genome AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat Alignment from GeneWise AACTTTGCAAGGGTAAAGATGCAAGTGACCATGGCACTGGCATCCCTGGTAGGCAAAGCACCAGACTTCAACGAAGAGCACCTGAGAAGGTCCTTAAGGACAATTTTGGCCTATTCAGAAGAGGACACGGCCATGCAGACAACTCCTTTTCCCATGCAG cacctggattagcaggggccctttgacttcttatgcgaccttctctctagAACTTTGCAAGGGTGAAGATGCAAGTGACCACGGCGCTCGCATCACAGGTAGGTAAAGCCCCAGAGTTTAATGAAGAGCATCTGAGAAGAACCTTAAGGACAATATTGGCCTACTCAGAAGAGCACATGGCCATGCAGACAACTCCATTCCCCATGCAGgtgagacctgatgatggcctaagccccttcatggatttgaaattaatcat #### Dock8_ID5421_39 --> 1 - 0 Original Alignment aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagaATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca Alignment from CESAR aATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagaATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca Alignment from Spaln_aa2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagAATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca Alignment from Spaln_nt2Genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagAATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCC---TGGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca Alignment from Pairagon AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagAATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCC---TGGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca Alignment from Exonerate_protein2genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagAATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca Alignment from Exonerate_coding2genome AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagAATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca Alignment from GeneWise AATTGCCAAGAGCTACCAGGCATCGCCTGACCTGCGGCTGACTTGGCTCCAGAACATGGCAGAGAAACACACTAAGAAGAAGTGCTTCACAGAGGCCGCCATGTGCCTGGTGCATGCAGCCGCCCTGGTGGCCGAGTACCTGAGCATGCTGGAGGACCACAGCTACCTGCCGGTGGGCAGCGTCAGCTTTCAG tgaattgatgttagggggttatccatgaatataagaactcctccccatagAATTGTGAAGAGTTACCAGGCCTCACCCGACCTACGGCTGACTTGGCTCCAAAACATGGCAGAGAAACACTCAAAGAAGAAATGCTTCACAGAGGCTGCTATGTGTCGGGTTCATGCAGCTGCCCTAGTGGCAGAGTACCTGAGTATGCTAGAGGACCACCAATACCTGCCT---GGAAGTATAAGCTTCCAAgtgagctaagtaaagctggcaatatattaaacagaaagttagactcctca #### Dock8_ID5422_40 --> 0 - 0 Original Alignment AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagcagAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta Alignment from CESAR AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagcagAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta Alignment from Spaln_aa2Genome AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagcagAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta Alignment from Spaln_nt2Genome AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagcagAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta Alignment from Pairagon AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagcagAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta Alignment from Exonerate_protein2genome AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagcagAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta Alignment from Exonerate_coding2genome AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagcagAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta Alignment from GeneWise ---AATATTTCTTCCAATGTGCTTGAGGAGTCTGCAGTCTCTGATGACACCTTGTCACCTGATGAGGACGGCGTATGCTCTGGTCGGTACTTCACTGAGAGTGGCCTGGTGGGCCTCCTGGAGCAGGCTGCGGAGCTCTTCAGCACG tttaaaaaaatgattgggtaattgtgcctatttcctttatttgaaagCAGAATATCTCTTTCAATGTGCTCAAGGAGGCAGCAGTCTCTGATGATACCCTGTCCCCCGATGAGGATGGCATTTGCTCTGGTCGGTACTTCACTGAGAGTGGGCTGGTAGGTCTCTTGGAGCAGGCTGCAGAGCTCTTCAGTACTgtatgtgtcttaggagcaagtagtttgaagctatattggcctggacacta #### Dock8_ID5423_41 --> 0 - 0 Original Alignment GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc Alignment from CESAR GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc Alignment from Spaln_aa2Genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc Alignment from Spaln_nt2Genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc Alignment from Pairagon GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc Alignment from Exonerate_protein2genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc Alignment from Exonerate_coding2genome GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc Alignment from GeneWise GGAGGCTTGTACGAGACGGTTAATGAAGTCTACAAGCTGGTCATCCCTATCCTGGAGGCACACAGAGATTTCCGGAAGCTGACCTCCACTCACGACAAGCTGCAGAAGGCCTTCGATAACATCATCAACAAG ccttaagttaacaccagtgtcttaagcaaacttgtttgcttcttttgtagGGAGGCTTGTATGAGACGGTTAATGAAGTCTACAAGCTGATCATCCCTATCCTGGAGGCACAAAAAGATCTTCATAAGCTAACCTCCACACATGATAAGCTCCAGAAGGCCTTTGATAACATCACCAATAAGgtaagtcaggctaccaccatctctctggtcccccccatgttttgtaaatc #### Dock8_ID5425_43 --> 0 - 0 Original Alignment GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct Alignment from CESAR GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct Alignment from Spaln_aa2Genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct Alignment from Spaln_nt2Genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct Alignment from Pairagon GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct Alignment from Exonerate_protein2genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct Alignment from Exonerate_coding2genome GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct Alignment from GeneWise GGATTTTATGGCCAGTGTTTCGGTGCAGAGTTTGTGGAAGTGATAAAAGACTCTACTCCAGTGGACAAAACCAAGTTGGATCCTAACAAG taggtgcttctgttgctacagcttcagatactgctgacgttaatttacagGGATTCCATGGCCAGTGTTTTGGTGCAGAGTTTGTGGAAGCAATAAAAGATTCTACTCCGGTGGACAAAACCAAGCTGGATCCTAATAAGgtatttcaagatgtcacactgggtactcttgctagatcttacatttatct #### Dock8_ID5426_44 --> 0 - 0 Original Alignment GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc Alignment from CESAR GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc Alignment from Spaln_aa2Genome GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc Alignment from Spaln_nt2Genome GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc Alignment from Pairagon GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc Alignment from Exonerate_protein2genome GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc Alignment from Exonerate_coding2genome GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc Alignment from GeneWise GCCTACATTCAGATCACTTTTGTGGAGCCTTACTTTGATGAATATGAGATGAAAGACCGGGTGACCTACTTCGAGAAGAATTTCAACCTCCGGAGGTTCATGTACACCACCCCCTTCACCCTGGAGGGGAGACCCCGGGGCGAGCTTCATGAGCAACACCGCAGAAACACCGTGCTCACCACCATGCACGCCTTCCCCTACATCAAGACCAGGATCCGAGTCAGCCAGAAAGAGGAG ctcgtgatgactaacacacctttccatcggagaatatggtccctccctagGCCTACATTCAAATTGCTTTCGTAGATCCTTACTTCGATGAATATGACATGAAAGACCGAGTGACATACTTTGAGAAAATATTCATCCTCCGAAGGTTCATGTATACCACCCCATTCTCACTCAAGGGGAAACCTCGGGGTGAGTTACATGAGCAGCACTGCAGGAACACTGTGCTCACAACCATGCATGCATTCCCCTGCACCAGAACCAGGATCCGTGCCAGCGAGGAAGAGGAAgtaagtgaactgatgtaaggctcatgtggcagatcccactggcctttctc #### Dock8_ID5428_46 --> 0 - 2 Original Alignment GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcggtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac Alignment from CESAR GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcg aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGcggtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac Alignment from Spaln_aa2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac Alignment from Spaln_nt2Genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac Alignment from Pairagon GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac Alignment from Exonerate_protein2genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac Alignment from Exonerate_coding2genome GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac Alignment from GeneWise GGACCACTGGAGGTGGCCCAAGTGTTCTTGGCTGAAATTCCAGCTGACCCAAAGCTCTACCGACATCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCG aggggcacttcacacctcccttcttcttttacagtatctatggtccacagGGACCACTGGAGGTGACTCAAGTATTCTTGGCTGAAATTCTGGCTGACCCTAAGCTGTACCAACACCACAACAAGCTGAGGTTGTGCTTCAAGGAGTTCATAATGCGgtgagtaaaggggtgatggctactagagtgtaattatatgggggcatcac #### Dpcd_ID9496_3 --> 2 - 0 Original Alignment tgAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagtgCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag Alignment from CESAR tgAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagtgCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag Alignment from Spaln_aa2Genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag Alignment from Spaln_nt2Genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag Alignment from Pairagon TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag Alignment from Exonerate_protein2genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag Alignment from Exonerate_coding2genome TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag Alignment from GeneWise TGAGGAAGTGGCGTGTGAAAAATGCCCTGGGAGCCTTGGGCCAGTGGCAGCTTGAAGTGGGAGAGCCAGTGCCCTCAGGAGCTGGGAGCCTGGGATCCGAGCTCATCAAAGAAAGTAATGCCAAT tgctgcttttgagttctaggcataggcttgtcatctttttccttccttagTGCGAAAGTGGCGTGTTAAAAATGCCCTGGGGGCCCTGGGTCAGTGGCAGCTTGAAGTGGGTGAGCCAGTACCCTCAGGAACTGGTAGCCTGGGATCCAAGCTCATCAAAGAGAGTAATGCTAAAgtacacctgtctgttcagggggttaaaaaccagctgagtcaagaccacag #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttaggaCCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttaggaCCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttagGACCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttagGACCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttagGACCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttagGACCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttagGACCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcctagcctgtaccttggattggaatcaattgtccctcatgtacttagGACCCCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCACTGGCAGTGTGTTGAATGTAAATGTTGCAACCTCTGTGGCACATCAGAAAATGATgtgtgtgtaattaggccagctaggcttccaagcttcaatagatgatacct #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttttcaaatttctccactgatcagGGTAAGGGTGTT Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatctttaacttaacttttctcttttagGGTAAGGGTGTT Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttttcaaatttctccactgatcagGGTAAGGGTGTT Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttttcaaatttctccactgatcagGGTAAGGGTGTT Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttttcaaatttctccactgatcagGGTAAGGGTGTT Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttttcaaatttctccactgatcagGGTAAGGGTGTT Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttttcaaatttctccactgatcagGGTAAGGGTGTT Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttttcaaatttctccactgatcagGGTAAGGGTGTT #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGgagtaagtaaaatctccaaattcacaggatttgctttccttttaatttttca Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGgagtaagtaaaatctccaaattcacaggattctcttcctatgctatatcaca Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttgctttccttttaatttttca Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttgctttccttttaatttttca Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttgctttccttttaatttttca Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttgctttccttttaatttttca Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGAG tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAGtaagtaaaatctccaaattcacaggatttgctttccttttaatttttca Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttgctttccttttaatttttca #### Dpp3_ID744_9 --> 2 - 1 Original Alignment gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagggTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATtgtaagactttcccttcagtacaaattcagtctacttctgtgtacacttct Alignment from CESAR gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACt atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagggTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATtgtaagactttcccttcagtacaaattcagtctacttctgggtgaatggtt Alignment from Spaln_aa2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATTgtaagactttcccttcagtacaaattcagtctacttctgtgtacacttct Alignment from Spaln_nt2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATTgtaagactttcccttcagtacaaattcagtctacttctgtgtacacttct Alignment from Pairagon GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATTgtaagactttcccttcagtacaaattcagtctacttctgtgtacacttct Alignment from Exonerate_protein2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATTgtaagactttcccttcagtacaaattcagtctacttctgtgtacacttct Alignment from Exonerate_coding2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATTgtaagactttcccttcagtacaaattcagtctacttctgtgtacacttct Alignment from GeneWise GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCGGGCATCAACATCCCCAACT atccatctatagcccagggtgtttgtgaaggctggctgatgtccttgcagGGTTTGTGGCTATGGTAAATAAAGTCATGAGTGCCAAGTTTGAGTGGCTTGTCACCAGTACTGAACAGGTGCTGAGGGAGTTGCCACGACCTCTTGCCTTTGAGAAGGATAAATTCCTCACCCCTGACTTCACTTCAATAGATGTCCTCACCTTTGCTGGGTCAGGTATACCTGCAGGCATCAACATCCCCAATTgtaagactttcccttcagtacaaattcagtctacttctgtgtacacttct #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGaggtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGaggtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from Exonerate_coding2genome AGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacAGGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggggtaatgtcccaacctccttaatcgtcttttctgttctttacacagGATAAGTCTGAGGATATGGATACTGATGGAGAGGAGGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaagattcacacaggtagtgtaacactttttttatcctgttgatgctgg #### Dtx4_ID3396_8 --> 0 - 0 Original Alignment GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga Alignment from CESAR GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga Alignment from Spaln_aa2Genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga Alignment from Spaln_nt2Genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga Alignment from Pairagon GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga Alignment from Exonerate_protein2genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga Alignment from Exonerate_coding2genome GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga Alignment from GeneWise GGACCAGAGCATCCGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGGGAGAAAA tttttattcagctttcatttcatcattctggacctttttccccttcatagGGGCCGGAACATCCAAATCCTAGCAAGAGCTTCAGTGCCCATGGCTTCCCACGACATTGTTACCTTCCAGGCAGTGAGAAAGGGAGAAAGgtgagttggacaaggtagctcacatgtgtgttgtattagactcagtatga #### Dtx4_ID3399_5 --> 2 - 0 Original Alignment gtAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcaggcAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca Alignment from CESAR gtAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcaggcAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca Alignment from Spaln_aa2Genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcagGCAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca Alignment from Spaln_nt2Genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcagGCAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca Alignment from Pairagon GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcagGCAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca Alignment from Exonerate_protein2genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcagGCAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca Alignment from Exonerate_coding2genome GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcagGCAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca Alignment from GeneWise GTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAAGGTCCGGCACCCACCAGAAGAG aatgactaatgtacacagccactctgtccctttttctgcattgatttcagGCAAAACACCTGAAGAAGTCCTAAAGAAGTACCTCCAAAAAGTCCGTCACCCACCAGAGGAGgtgggctgatgggtttaggcagtatttacttaggcacaaatcctatgtca #### Dusp5_ID11303_3 --> 0 - 1 Original Alignment GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTg ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTggtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac Alignment from CESAR GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTg ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTggtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac Alignment from Spaln_aa2Genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTGgtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac Alignment from Spaln_nt2Genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTGgtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac Alignment from Pairagon GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTGgtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac Alignment from Exonerate_protein2genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTGgtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac Alignment from Exonerate_coding2genome GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTGgtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac Alignment from GeneWise GGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGGAAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCACCTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGATTTTATTG ccatcatggattcaaattttctgtgctgttttcccttttttttcctgtagGGTGGCCCAGTAGAAATTCTTCCATTTCTCTACCTTGGAAGTGCCTACCATGCATCTAAGTGTGGCTTCCTTGCCAACCTGCACATCACAGCCCTACTTAATGTTTCGCGCCGGACCTCTGAGGCCTGCACAACCCACCTCCACTACAAGTGGATCCCCGTAGAGGACAGCCACACTGCTGACATTAGCTCCCACTTTCAAGAGGCAATAGATTTTATTGgtaagcttaattgcctaatcccatcctgcctgcttgatttcaagaaccac #### Eef1g_ID2563_5 --> 0 - 0 Original Alignment GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc Alignment from CESAR GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc Alignment from Spaln_aa2Genome GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc Alignment from Spaln_nt2Genome GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc Alignment from Pairagon GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc Alignment from Exonerate_protein2genome GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc Alignment from Exonerate_coding2genome GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc Alignment from GeneWise GCCACTGAAAATGCGAAAGAGGAGGTGAAGCGAATCCTGGGGCTGCTGGACACTCACTTGAAGACTCGAACTTTTCTAGTGGGCGAGCGAGTGACACTGGCTGATATTACAGTTGTCTGTACCCTGTTGTGGCTCTATAAACAG ttggtgcaactgggtctgtagggggggattgtctctcttttcttttaaagGCCACAGAAAATGCCAATGAGGAGGTGAAGCGAATCCTAGGGCTACTGGATACTCACTTGAAAACCCAAACATTCCTAGTAGGGGAGCGGGTGACACTGGCAGATATTACGGTTGTATGTACGCTCTTGTGGCTCTTTAACCAAgtgagttcccaaatggtggtgtgattctccaggcaatccactcttgtgtc #### Eef1g_ID2564_6 --> 0 - 1 Original Alignment GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATggtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta Alignment from CESAR GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATg gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATggtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta Alignment from Spaln_aa2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta Alignment from Spaln_nt2Genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta Alignment from Pairagon GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta Alignment from Exonerate_protein2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta Alignment from Exonerate_coding2genome GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta Alignment from GeneWise GTCTTAGAGCCTTCTTTTCGCCAGGCCTTCCCCAATACCAACCGGTGGTTCCTTACCTGCATTAACCAGCCCCAGTTCAGGGCTATCTTGGGGGAGGTGAAGCTGTGTGAGAAGATGGCTCAGTTTGATG gtaccgtttggtctttgcaggtcttagaatatttgcccctgttcttgtagGTCTTAGAGCCTTCCTTTTGCCAGGCCTTCCCCAATGCCAACCGGTGGTTCCTGGCTTGTATCAACCAGCCCCAGTTTAGGGCCATCTTGGGGGAGGTGAAGCTGTGTGAGAAAATGGCTCAGTTTGATGgtgagctagaaaaactatacgcaaaagtggttaatgtctagctgggatta #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtggtggctgtccatgactttcatctttttactttttatttttcaatagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtggtggctgtccatgactttcatctttttactttttatttttcaatagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc #### Efemp2_ID1034_7 --> 2 - 1 Original Alignment atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg cctcaaattttccccactaccaatgatctgttctccactttgtctttcagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAggtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from CESAR atATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAg cctcaaattttccccactaccaatgatctgttctccactttgtctttcagatATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAggtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Spaln_aa2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Spaln_nt2Genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Pairagon ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Exonerate_protein2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from Exonerate_coding2genome ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga Alignment from GeneWise ATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAG cctcaaattttccccactaccaatgatctgttctccactttgtctttcagATATTGATGAGTGTGGCTACTCCAGTTATCTTGGGCAATACCGCTGTGTAAACGAGCCCGGCCAATTCTCCTGCCACTGCCCACAGGGCTACCAGCTGTTGGCAACAAGGCTCTGCCAAGgtaggtaggcttaggtgtacagaacacaaaaagcccataacttaccatga #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cagtatgcccccaaggatcatggacacaccctcattcccgctgccaccagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAATGGTGCCAAGAAGTGACCAATGGCTACCGTGGTGTCTGTATCACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtaagtcagcagtcagggggagggtgagactgtcagggcaccatgaacag #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---GGTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGG---GGTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Exonerate_protein2genome gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctgccagaccctctagtgctgaagacaccagtcctgctccggtaagtgcccctgcgcccccagttagagctttccggggccaaggggatccaactgccatgactgatggggtggggcctgagaccctagagcccccagcaactccacctgagacaaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from Exonerate_coding2genome gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagctgccagaccctctagtgctgaagacaccagtcctgctccggtaagtgcccctgcgcccccagttagagctttccggggccaaggggatccaactgccatgactgatggggtggggcctgagaccctagagcccccagcaactccacctgagacaaggtaactatcatctcagcttctttgagctagaagaggataccacacatccc Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggaggcaatctgaacctacatgagctgttaatttatttttatttcccagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCGGTAAGTGCCCCTGCGCCCCCAGTTAGAGCTTTCCGGGGCCAAGGG---GATCCAACTGCCATGACTGATGGG---GTGGGGCCTGAGACCCTAGAGCCCCCAGCAACTCCACCTGAGACAAGgtaactatcatctcagcttctttgagctagaagaggataccacacatccc #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttacgatactctttctaggaaactctgttgccttctttcctcttccacagGATCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACATTCATTATTGAAAATgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from CESAR GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttacgatactctttctaggaaactctgttgccttctttcctcttccacagGATCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACATTCATTATTGAAAATgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Spaln_aa2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttacgatactctttctaggaaactctgttgccttctttcctcttccacagGATCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACATTCATTATTGAAAATgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Spaln_nt2Genome GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttacgatactctttctaggaaactctgttgccttctttcctcttccacagGATCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACATTCATTATTGAAAATgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Pairagon GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttacgatactctttctaggaaactctgttgccttctttcctcttccacagGATCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACATTCATTATTGAAAATgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Exonerate_protein2genome ttacgatactctttctaggaaactctgttgccttctttcctcttccacaggatcctcatgtggaccagtatgaaaccaaagagtggacattcattattgaaaatgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Exonerate_coding2genome ttacgatactctttctaggaaactctgttgccttctttcctcttccacaggatcctcatgtggaccagtatgaaaccaaagagtggacattcattattgaaaatgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from GeneWise GACCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttacgatactctttctaggaaactctgttgccttctttcctcttccacagGATCCTCATGTGGACCAGTATGAAACCAAAGAGTGGACATTCATTATTGAAAATgtgagtcattgggacagtatacattcacctctaattgagagtattgcaac #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagGGTCACAGCTGGCAGCCTGGCATTCAGAATCCATATCTTGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGACATTTCTGTAACCCTGCACAAGgtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagGGTCACAGCTGGCAGCCTGGCATTCAGAATCCATATCTTGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGACATTTCTGTAACCCTGCACAAGgtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagGGTCACAGCTGGCAGCCTGGCATTCAGAATCCATATCTTGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGACATTTCTGTAACCCTGCACAAGgtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagGGTCACAGCTGGCAGCCTGGCATTCAGAATCCATATCTTGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGACATTTCTGTAACCCTGCACAAGgtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagGGTCACAGCTGGCAGCCTGGCATTCAGAATCCATATCTTGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGACATTTCTGTAACCCTGCACAAGgtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta Alignment from Exonerate_protein2genome cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagggtcacagctggcagcctggcattcagaatccatatcttggcactgcagtatggatggttcctgaaaatgtggacatttctgtaaccctgcacaaggtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta Alignment from Exonerate_coding2genome cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagggtcacagctggcagcctggcattcagaatccatatcttggcactgcagtatggatggttcctgaaaatgtggacatttctgtaaccctgcacaaggtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACCGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG cagttcaattcaacaatggaggggattacctcccacctcttcctgctcagGGTCACAGCTGGCAGCCTGGCATTCAGAATCCATATCTTGGCACTGCAGTATGGATGGTTCCTGAAAATGTGGACATTTCTGTAACCCTGCACAAGgtgagtgcaggtgcggtgggaggcacagcagggagtgagcaagcactgta #### Ehbp1l1_ID1233_2 --> 1 - 0 Original Alignment gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ccgaaatgggactgcctaactagcagttattccttttcactatgttgcaggCAGCCTGACAAGCTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCCAAGgtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa Alignment from CESAR gCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ccgaaatgggactgcctaactagcagttattccttttcactatgttgcaggCAGCCTGACAAGCTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCCAAGgtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa Alignment from Spaln_aa2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ccgaaatgggactgcctaactagcagttattccttttcactatgttgcagGCAGCCTGACAAGCTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCCAAGgtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa Alignment from Spaln_nt2Genome GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ccgaaatgggactgcctaactagcagttattccttttcactatgttgcagGCAGCCTGACAAGCTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCCAAGgtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa Alignment from Pairagon GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ccgaaatgggactgcctaactagcagttattccttttcactatgttgcagGCAGCCTGACAAGCTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCCAAGgtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa Alignment from Exonerate_protein2genome ccgaaatgggactgcctaactagcagttattccttttcactatgttgcaggcagcctgacaagctggtggtggtatggactcaacggaatcggaggatctgctccaaggtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa Alignment from Exonerate_coding2genome ccgaaatgggactgcctaactagcagttattccttttcactatgttgcaggcagcctgacaagctggtggtggtatggactcaacggaatcggaggatctgctccaaggtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa Alignment from GeneWise GCAGCCTGACAAGCTGGTGGTGGTATGGACTCGGCGGAACCGAAGGATCTGCTCCAAG ccgaaatgggactgcctaactagcagttattccttttcactatgttgcagGCAGCCTGACAAGCTGGTGGTGGTATGGACTCAACGGAATCGGAGGATCTGCTCCAAGgtttgtaaggtaagctttgggctgggtatgggcagggcaaaatatgggaa #### Eif3a_ID13322_8 --> 0 - 0 Original Alignment GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg Alignment from CESAR GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg Alignment from Spaln_aa2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg Alignment from Spaln_nt2Genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg Alignment from Pairagon GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg Alignment from Exonerate_protein2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg Alignment from Exonerate_coding2genome GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg Alignment from GeneWise GTCAGGTTCAGTGTGCTACAGTATGTTGTCCCAGAAGTGAAAGACCTTTACAACTGGTTGGAGGTGGAATTCAACCCACTAAAACTCTGTGAGAGAGTTACAAAG accttttttagtggttgaactttcctgccatgtttctctttcctttacagGTCAGGTTCAGTGTACTGCAGTATGTTGTTCCAGAAGTGAAAGAACTTTACAACTGGCTGGAGGTAGAACTTAACCCTCTAAGAATCTGTGAGAGAGTTACAAAGgtatgtagtgacataggccaatctctgtgaactatgtccctgtttagatg #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG ctcactctaaagatttagaagtcatcttttcagatcttgtttgttcgcagGTAAACATTAAGTCTTTAAAGGACGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCTCAACAAATGGTGTTGGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaggtagtaagagggtattttttatcgtcagacaaagtgttacaattat #### Eml3_ID2504_4 --> 1 - 2 Original Alignment TGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGag TGCAGCCTCTTGAGTGTTCAGACacgtgagctttttttttttcctgacaggCCACGAAGAAATTCTTCCTCCTCACCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAaggtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct Alignment from CESAR TGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGag TGCAGCCTCTTGAGTGTTCAGACacgtattttttttttttttcctgacaggCCACGAAGAAATTCTTCCTCCTCACCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAaggtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct Alignment from Spaln_aa2Genome TGCAGCCTCTTCA GCGTTCTGACACGCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCTCTTGAgtgttcagacacgtgagctttttttttttcctgacagG------------CCACGAAGAAATTCTTCCTCCTCACCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAAGgtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct Alignment from Spaln_nt2Genome TGCAGCCTCTTCAGC GTTCTGACACGCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCTCTTGAGTgttcagacacgtgagctttttttttttcctgacag----------GCCACGAAGAAATTCTTCCTCCTCACCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAAGgtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct Alignment from Pairagon TGCAGCCTCTTCAGCGTTCTGACAC-------------------------GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCTCTTGAGTGTTCAGACACGTGAGCTTTTTTTTTTTCCTGACAGGCCACGAAGAAATTCTTCCTCCTCACCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAAGgtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct Alignment from Exonerate_protein2genome TGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCTCTTGAGTGTTCAGACACgtgagctttttttttttcctgacaggccacgA---AGAAATTCTTCCTCCTCA---CCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAAGgtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct Alignment from Exonerate_coding2genome TGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCTCTTGAGTGTTCAGACACgtgagctttttttttttcctgacaggccacgA---AGAAATTCTTCCTCCTCA---CCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAAGgtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct Alignment from GeneWise TGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCCTCCTCCTCCTCCCCCTCAGAGCGGCCCAGGCAGAAACTCTCCAGGAAGGCAGCTTCCTCAGCTAACCTGCTATTGCGGTCAGGGAGCACAGAGAG TGCAGCCTCTTGAGTGTTCAGACACgtgagctttttttttttcctgacagGCCACGAAGAAATTCTTCCTCCTCACCCTCCCCCTCCAAGCGGCCCAGACAAAAGCTCTCGAAGAAAGCACCTTCCTCAGCTAACCTATTATTACGGTCAGGGAGCACAGAAAGgtaagccaggtttagttcttcatttgaagtttactatgacgtgacttcct #### Eml3_ID2506_5 --> 1 - 1 Original Alignment cCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAg ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagtCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAggtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa Alignment from CESAR cCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAg ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagtCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAggtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa Alignment from Spaln_aa2Genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa Alignment from Spaln_nt2Genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa Alignment from Pairagon CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa Alignment from Exonerate_protein2genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa Alignment from Exonerate_coding2genome CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa Alignment from GeneWise CCGGGGGAACAAAGACCCTCTGTCCAGTCCTGGGGGTCCCGGATCTCGGAGGAGCAATTATAACTTAG ttatctctgtcggcggacacaagttgtactgctggtctcctccctggcagTCGTGGGAATAAAGACCCTCTGTCCAGTCCTGGGGGTCCTGGATCTCGGAGGAGCAATTATAATTTAGgtaggttgaagggaatggcattagcaatgtgcactggtaacatatggcaa #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagtCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from CESAR cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagtCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Pairagon CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG-------------------------------------------------- atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGGTAAGTGCCAGTGAGCAGATGGCAATGAGATTATGGGTCAAATTTACTTC #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttacttcccagctctatctgccccgccacccccagCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa Alignment from GeneWise --------------------------------------------------CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG GATTATGGGTCAAATTTACTTCCCAGCTCTATCTGCCCCGCCACCCCCAGCCCCTGCAGCCAGTGGTTCATACCTGGGACTCAGAAACACTCCTAAAACTACAGGAAATTGGTCTGGGTGCCTTTGAGCGAGGTGTAGGGGCCTTGGCATTTTCAGCAGCAgtgcgttgagcatgggagcacgtttgtgaccttgttatgttgtttgataa #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGGAGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAggtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAggtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG atgtcatccatgatgtggcaaactcttgttatcttaccacactaccatagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTTCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGCATCGACGACTGGTGCAGTGGGGGCCTGGGCTGGTGGCCCTCCAGGAGGCAGAGgtcagtcctgtcctggactctgagtctgagaagggatggggagacatggt #### Eml3_ID2516_15 --> 0 - 0 Original Alignment CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaatgactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from CESAR CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaaatactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Spaln_aa2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaatgactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Spaln_nt2Genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaatgactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Pairagon CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaatgactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Exonerate_protein2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaatgactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from Exonerate_coding2genome CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaatgactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat Alignment from GeneWise CTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG CTCTCCTGTTATCCAGgtaatgactttaatagtctcttatcttctttaagGGACATACAGATGAGCTGTGGGGCTTGTGTACACATCCATCTCAGAATCACTTTCTCACCTTTGGCCATGACAGGCAACTCTGCCTGTGGGATGGAGAAGGTCATGCATTGGCCTGGAGCATGGATCTAAAAgtaagtagctgtcctttaacttcctcaccaaacatgttcagattgcaaat #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagatGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagatGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa #### Emx2_ID12980_2 --> 2 - 0 Original Alignment ggAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaaggaAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag Alignment from CESAR ggAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaaggaAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag Alignment from Spaln_aa2Genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaagGAAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag Alignment from Spaln_nt2Genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaagGAAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag Alignment from Pairagon GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaagGAAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag Alignment from Exonerate_protein2genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaagGAAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag Alignment from Exonerate_coding2genome GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaagGAAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag Alignment from GeneWise GGAACGACACAAGTCCCGAGAGTTTCCTTTTGCACAACGCTCTGGCCAGAAAGCCAAAGCGGATTCGAACCGCCTTCTCGCCGTCCCAGCTTTTAAGGCTAGAGCACGCTTTTGAGAAGAACCATTACGTGGTGGGAGCGGAAAGGAAGCAGCTGGCTCACAGTCTCAGTCTTACGGAAACTCAG gtgaaacctttggagggcccctgaataacacccgacactttgttttaaagGAAATGACACAAGTCCTGAAAGTTTCCTTTTGCATAACATCCTGGCCAGGAAGCCAAAGCGAATCCAGAACACTTTTTCACCATCCCAACTTTTAAGGCTAGAGCATGCTTTTGAGAAGAACCATTATGTGGTGGGTGCAGAAAGGAAGCAGCTGGCTCACAGCCTGAGTCTTCCAGAAACTCAAgtgagtattaggcagcagctatcaccaggctacaaaccaagatcagtgag #### Eno4_ID12829_2 --> 0 - 0 Original Alignment GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt Alignment from CESAR GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt Alignment from Spaln_aa2Genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt Alignment from Spaln_nt2Genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACT---TGGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt Alignment from Pairagon GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACT---TGGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt Alignment from Exonerate_protein2genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt Alignment from Exonerate_coding2genome GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt Alignment from GeneWise GCAAACTACTTTTCTAAACTTGCGAAGCCTCCCTCCATATGCAAAATAGTAGGGAAAACCATACTGGATGGCCTGGGACTTCCTACTCTACAGGTGGAAATCTCCTGCACCATTCAAAATTTCCCCAAG tcttctcctatgaaagggtgatgcgtcattttctttatttttcaatatagGCGAACTACTTTTCTAAACTTGCAAAGCCTCCCTCTGTATGTAAAATAGTGGAGAAGACCATACTT---GGCTTGGGACTGCCTACCTTACAGTTGCAAATCTCCTGCACAATTCAGAACTTCCCCAAGgtagatcataggggaatatggctcttttcaatactgactgaagaattgtt #### Eno4_ID12831_3 --> 0 - 2 Original Alignment TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCag aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTAAG---GCAGAGGTAGACCACAGAACCaggtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc Alignment from CESAR TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCag aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCT---AAGGCAGAGGTAGACCACAGAACCaggtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc Alignment from Spaln_aa2Genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCT---AAGGCAGAGGTAGACCACAGAACCAGgtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc Alignment from Spaln_nt2Genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTA---AGGCAGAGGTAGACCACAGAACCAGgtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc Alignment from Pairagon TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCTA---AGGCAGAGGTAGACCACAGAACCAGgtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc Alignment from Exonerate_protein2genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCT---AAGGCAGAGGTAGACCACAGAACCAGgtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc Alignment from Exonerate_coding2genome TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCT---AAGGCAGAGGTAGACCACAGAACCAGgtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc Alignment from GeneWise TACATCTGTGCCGTGGCGATCCCTACGCACTTTGAAGTCGTGGAGAACGCTTTGCCAGAGGCGTTGGATGCAGAGGACTCAGAAAGGGCCCAGGCCGTGAACACAGCGGTGCAGTGGATCAATCAGTCCATCACAGAGGAGCTGTGGGGTCTGGTCCCCTCCAACCAGGCAGAGGTGGACCACAGGCTCAG aagtaatatgatgggttccaacaatacatctctgacctcctcccctacagTACATATGTGCTGTGGCAATCCCTATACACTTTGCAGTTGTGGAGAACACTTTGTCTGAGGCATTGGATGTAGAAGACTCAGAAAGAGCCCAGGCTGTTAAC---------CAGTGGATTAATCAGTCTATCATAGAGGAGCTGTGGGGTCTGGTCCCTTCT---AAGGCAGAGGTAGACCACAGAACCAGgtacttcattcagctacaaataccacatgtatgctctccagtcaggttcc #### Eno4_ID12833_5 --> 2 - 0 Original Alignment gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat Alignment from CESAR gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat Alignment from Spaln_aa2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat Alignment from Spaln_nt2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat Alignment from Pairagon GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat Alignment from Exonerate_protein2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat Alignment from Exonerate_coding2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat Alignment from GeneWise GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaactcgccttggaaaagactagactgtgaatttttcctctttcagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCAGAGCCACCTGAACCGGTTCGGCATGGTAGCATGGCCCTAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGTGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtacgctaatgttggacgtggaaaaagacatggtggcagtatgtagagat #### Eno4_ID12840_12 --> 2 - 0 Original Alignment gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct Alignment from CESAR gtAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccaggtAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct Alignment from Spaln_aa2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct Alignment from Spaln_nt2Genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct Alignment from Pairagon GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct Alignment from Exonerate_protein2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct Alignment from Exonerate_coding2genome GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct Alignment from GeneWise GTAAGAAGCTCCTGGCCGTCTTTGGAAGCACAGACTCGGAGTCCTCTGATGACAGCCTTGTCGATTTG gtgatttgctgtgatgactatctattatggtattttttttctctttccagGTAAGAAACTCCTGGCTGTCTTTGGAAGCACAGACTCAGAATCCTCTGATGACAGCCTTGTCGATTTGgtaaggacagtaatgttagttagccacaaaaatgcaaaccctccttatct #### Entpd1_ID8009_4 --> 2 - 2 Original Alignment gtCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTag tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagggTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTaggtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta Alignment from CESAR gtCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTag tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagggTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTaggtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta Alignment from Spaln_aa2Genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTAGgtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta Alignment from Spaln_nt2Genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTAGgtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta Alignment from Pairagon GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTAGgtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta Alignment from Exonerate_protein2genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTAGgtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta Alignment from Exonerate_coding2genome GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTAGgtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta Alignment from GeneWise GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG tcaccccatctttatcttctaaaagtttacgtgaccttccttgtgtgcagGGTCAGGAATCTCAAAATATGCTCAGAAAGCAGATGAAATTGGTGCATACTTGGCTGAATGTATGGAACTGTCGACGGAGCTTATACCAACATCCAAGCATCACCAGACACCTGTCTACCTGGGAGCCACAGCAGGCACACGCCTGCTTAGgtgggctttcacgtatacttcacagggatgtatggcagtattgaattgta #### Entpd7_ID8796_5 --> 1 - 1 Original Alignment gCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAg aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccaggCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAggtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt Alignment from CESAR gCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAg aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccaggCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAggtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt Alignment from Spaln_aa2Genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccagGCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt Alignment from Spaln_nt2Genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccagGCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt Alignment from Pairagon GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccagGCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt Alignment from Exonerate_protein2genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccagGCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt Alignment from Exonerate_coding2genome GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccagGCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt Alignment from GeneWise GCAACAGTTGGCTATCTTGGCAGATTTAGTGAAAGATTTGCCGTTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCCGAAGTGATCTCTGGGAAACAGGAAG aagtatcatatatttgggaattttgaccgcctgtttccctctcttcccagGCAACAGTTGGCTATCTTGGCTGATTTAGTTAAAGATTTACCATTGGAGTTTGACTTCCTCTTTTCACAGTCTCAGGCTGAAGTGATCTCTGGGAAACAGGAAGgtaaatgttggggttggaagctcaactgcagattctgcagcaaggctggt #### Entpd7_ID8800_9 --> 1 - 0 Original Alignment aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagaCTGCTTGGCCAAAAGACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc Alignment from CESAR aCTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagaCTGCTTGGCCAAAAGACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc Alignment from Spaln_aa2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagACTGCTTGGCCAAAAGACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc Alignment from Spaln_nt2Genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagACTGCTTGGCCAAAAGACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc Alignment from Pairagon ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagACTGCTTGGCCAAAAGACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc Alignment from Exonerate_protein2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagACTGCTTGGCCAAAAGACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc Alignment from Exonerate_coding2genome ACTGCTGGGCCAGAAGACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagACTGCTTGGCCAAAAGACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc Alignment from GeneWise ACAGGCCTGAGTCCTGACAATCCCTTTCTGGACCCCTGCCTGCCTGTGGGACTCACAGATATGGTGAAGAGGAACAACCAGGTCCTTCACTTCCGAGGAAAGGGAGACTGGGCCAGTTGTCGGACATTGCTGAGCCCCCTGCTGGCCCGCTCCAACACCAGCCAGGCCTCACTGAACGGTATTTACCAGTCTCCAATCGACTTCAACAACAGCGAGTTCTATGGCTTCTCAGAGTTCTTCTACTGCACCGAAGATGTGCTGCGCATCGGTGGCCACTACCACGGGCCCACATTTGCCAAGGCTGCTCAG agggctttcagacagttgatggtttctacctaactagattatattttcagactgcttggccaaaagACAGGCCTCAGCCCTGACAATCTCTTTCTCGACCCCTGCCTTCCTGTGGGCCTCTCAGACATGGTAAAGAGGAACAATCAGGTCCTTCACTTCCGAGGAAGGGGAGACTGGGCCAGCTGTCGGACATTGCTAAGCCCTCTGCTGGCCTGTCCCAATACTAGCAAGGCTCCGTTGAATGGAATTTACCGG---CCAATTGATTTTAACAATGGTGAGTTTTATGGCTACTCAGAGTTCTTCTACTGCAGTGAAGAGGTACTGCGCATTGGTGGTCACCACCATGGGACCACATTTGTAAAGGCTGCTCAAgtaagttagtaagagttaacatctcatgttgttgtcctatcaatggatgc #### Erlin1_ID8896_8 --> 1 - 1 Original Alignment gGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAg atagatatatggtttaagtcctctttggtctttcttcttgtattttctaggGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCggtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc Alignment from CESAR gGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAg atagatatatggtttaagtcctctttggtctttcttcttgtattttctaggGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCggtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc Alignment from Spaln_aa2Genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atagatatatggtttaagtcctctttggtctttcttcttgtattttctagGGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCGgtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc Alignment from Spaln_nt2Genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atagatatatggtttaagtcctctttggtctttcttcttgtattttctagGGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCGgtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc Alignment from Pairagon GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atagatatatggtttaagtcctctttggtctttcttcttgtattttctagGGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCGgtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc Alignment from Exonerate_protein2genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atagatatatggtttaagtcctctttggtctttcttcttgtattttctagGGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCGgtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc Alignment from Exonerate_coding2genome GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atagatatatggtttaagtcctctttggtctttcttcttgtattttctagGGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCGgtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc Alignment from GeneWise GGAGGCAGAGAAGACAAAACTTCTCATAGCTGCACAGAAACAAAAGGTGGTGGAGAAAGAAGCTGAGACGGAGAGGAAAAGGGCTGTTATAG atagatatatggtttaagtcctctttggtctttcttcttgtattttctagGGAAGCAGATAAGACCAAACTTCTCATAGCATCACAGAAACAAAAAGTAGTGGAGGAAGATGCTGAGACAGAGCGGAAAAGAGCAGTAATCGgtgggtgcttggaccatctgtgtacaatggtagagaacagcagcttggcc #### Erlin1_ID8897_7 --> 0 - 2 Original Alignment GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAatgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag Alignment from CESAR GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAat acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAatgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag Alignment from Spaln_aa2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag Alignment from Spaln_nt2Genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag Alignment from Pairagon GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag Alignment from Exonerate_protein2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag Alignment from Exonerate_coding2genome GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag Alignment from GeneWise GCTGTGCGTGTTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAAT acgaaggtcagttatgctatttggggctttatttgtctgttttcattcagGCTGTCCATATTACAAAACCCAAAATCCCAGAAGCCATAAGAAGAAATTTTGAATTAATgtaggaaacactcatgatttagaaaccagcaaaatcctgatagagcagag #### Exoc6_ID7372_11 --> 1 - 0 Original Alignment gTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctaggTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg Alignment from CESAR gTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctaggTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg Alignment from Spaln_aa2Genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg Alignment from Spaln_nt2Genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg Alignment from Pairagon GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg Alignment from Exonerate_protein2genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg Alignment from Exonerate_coding2genome GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg Alignment from GeneWise GTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCA atgctgactcataccgtgcaagtcattgtggaatacttgtctttccctagGTTCTTTGTAGTGGAAGATCACATTTTACATGTGACTCAAGGCTTGGTAACCAGGGTTTACACTGAGGAACTGTGGAACATGGCCCTTTCAAAGATAATTGCTATTCTCAGAGCTCACTCAgtaaaacagaccagacatgttgcgaccaatacaaaatcactctctttttg #### Exoc6_ID7376_14 --> 1 - 0 Original Alignment gGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacaggGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt Alignment from CESAR gGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacaggGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt Alignment from Spaln_aa2Genome GGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacagGGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt Alignment from Spaln_nt2Genome GGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacagGGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt Alignment from Pairagon GGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacagGGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt Alignment from Exonerate_protein2genome GGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacagGGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt Alignment from Exonerate_coding2genome GGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacagGGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt Alignment from GeneWise GGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAG tacagagttaaagatagtcaaacacaatgtttcttccccacctcctacagGGACATTTTTGAAGAAGACAACTACAGCCCAATCCCTATTGGCAGTGAGGAAGAATATAAAGTGGTCATTAGCAGGTTCCCCTTTCAGGATCCAGATCTCAAAAAGgtgcgaatattttcctagcttaaggttctagatgaaaagatcaggatatt #### Exoc6_ID7379_16 --> 1 - 0 Original Alignment cTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagcTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg Alignment from CESAR cTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagcTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg Alignment from Spaln_aa2Genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg Alignment from Spaln_nt2Genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg Alignment from Pairagon CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg Alignment from Exonerate_protein2genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg Alignment from Exonerate_coding2genome CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg Alignment from GeneWise CTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAG tttcccccctacaattgttggatttcagcattcttcatttcttttcacagCTCAACAGAAATAGATGACATGCTTAGGAAATTAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTATTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGgttggtggaaataatattttacttcaaaagtgttgggcaacgtgagatgg #### Exoc6_ID7382_18 --> 0 - 0 Original Alignment GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg Alignment from CESAR GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg Alignment from Spaln_aa2Genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg Alignment from Spaln_nt2Genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg Alignment from Pairagon GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg Alignment from Exonerate_protein2genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg Alignment from Exonerate_coding2genome GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg Alignment from GeneWise GATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT ggctcctgccattgtatcctatggataacagggttgttttacctcttcagGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAGATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGAAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTCTCAAGTGTTTACCCATTTGCCAgtaagtatggacaatttcaagtccatcacttttatacttactatcatgtg #### Exoc6_ID7388_19 --> 0 - 1 Original Alignment GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAc caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGtgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata Alignment from CESAR GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAc caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGtgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata Alignment from Spaln_aa2Genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGTgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata Alignment from Spaln_nt2Genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGTgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata Alignment from Pairagon GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGTgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata Alignment from Exonerate_protein2genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGTgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata Alignment from Exonerate_coding2genome GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGTgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata Alignment from GeneWise GGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC caaaggtttccgatatatgctgttaacaacctttgattattatttcccagGGAAAAGTTGCCCAGGCAGCATGTATGTCCGCATGCCAACATCTGTCCACATCATTAATGCAGATGCTGCTAGATAGTGAGTTAAAGCAGATCAGCATGGGAGCTGTGCAGCAGTTTAACCTTGATGTCATACAGTGTGAGTgtaagaatggatcatgtaacttccctgtgtgagtgtcactatggattata #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actgaaagtactgtccaatgaatttcagtgttcttgttctcacactacagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTAACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgctgtttacctcttagtctaaacctcagatgccaaaagagtggtctgt #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from CESAR CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Spaln_aa2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Spaln_nt2Genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Pairagon CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Exonerate_protein2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from Exonerate_coding2genome CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc Alignment from GeneWise CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA tgatccctacactgatacatggaaatttaatgccacctcctttcttgcagCTGCAGGCAACCTGCAATGTTCACCAATCTGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtacgggcagatctccaagaaacacgggtggcacagggagaagggtaggc #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACtagtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACtagtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACTAgtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACTAgtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACTAgtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACTAgtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACTAgtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA ccaaggtaatgaaaaagttgtctccatttgttttctgtgcttgcttgtagTTGGCAGCCACCTGCAATGTAGATTCATCACTCTTCATTGACTGGTTCAGTGGTCACCTTAATTTTCAAATTGAGCACTAgtgagtatggcattgaggggttagtggcaggatccaaacctagagctaat #### Fam160b1_ID12352_3 --> 2 - 0 Original Alignment atGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagatGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAG---CAATCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc Alignment from CESAR atGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagatGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCAA---TCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc Alignment from Spaln_aa2Genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagATGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCAA---TCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc Alignment from Spaln_nt2Genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagATGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGC---AATCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc Alignment from Pairagon ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagATGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGC---AATCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc Alignment from Exonerate_protein2genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagATGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAG---CAATCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc Alignment from Exonerate_coding2genome ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagATGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAG---CAATCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc Alignment from GeneWise ATGATAAAGCCCCAGTGACCGACACAAACATCCCATCCCACCTGGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAGCGGGAATCTGGAGAGACAGGGCCATGCATGGAATACCTGCTCCATCACAAGATCTTGGAAACGTTATACACCTTAGGGAAAGCCGAC ataagtaactctcttgcccccattatatatccttggtatatggcctacagATGATAAGGCCCCAGTGACGGACACCAACATATCATCCCATCTAGAACAGATGTTAGACATCCTGGTCCAAGAAGAAAATGAG---CAATCTGGAGAGACCGGGCCTTGCATGGAATATCTGCTCCATCACAAGATCTTGGAAACATTATACACTCTAGGAAAGTCTGGTgtgagttcctttgcaatatcactgatgttgacatgtaagccatacatgcc #### Fam160b1_ID12355_6 --> 0 - 0 Original Alignment AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga Alignment from CESAR AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga Alignment from Spaln_aa2Genome AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga Alignment from Spaln_nt2Genome AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga Alignment from Pairagon AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga Alignment from Exonerate_protein2genome AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga Alignment from Exonerate_coding2genome AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga Alignment from GeneWise AACAAATCAAAGTCCCTGGTGTCCAGAGGAGCTCTGAGTGTCATCTCAGAGGATGGCCCAAAAGGTCAGGACCCGGGGTCAGGAGACGTCAGCCAGTGCCAGCAGCCCCAGGAGCTGTCAGGTGCTACTGGGGTGGAGCCCACGGAGTCGGAGGAAGAGCCCCCTCACCAGATGGATGACCTGTCTGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCGGAGGCCTCTGCCGTCCGGCCAAACCAGGACTACAACTTAGTGAATTCTTTGTTAAACCTGACAAGAAGTCCT tattttcttttttagatatggccctcaatttatgactaaaacaaataaagAACAAATCAAAGTCCCTAGTGTCCAGAGGAGCCCTGAGTGTCATCTCAGAAGATGGGCCAAAAGGTCAGGACCCGGGGTCAGGAGATATCAGCCAATGCCAGCAGCCTCAGGAGCTGTCGGGTGCTACTGGGGTGGAACCCACAGAGTCCGAGGAAGAACCCCCTCACCAGATGGATGACCTGTCAGCAAGCCTAGATGACCTCAATGTCACCTCACTGCCAGAGGCATCTGCCGTCCGACCAAACCAGGACTACAACTCAGTGAATTCTTTGTTAAACCTCAGAAGAAGTCCTgtgagtcaacctcctattgccacgcacacctaacatttaagtaatgtgga #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcaggTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcaggTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTgtgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTgtgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTGTgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTGTgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTGTgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTGTgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTGTgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT atgaacagacacttctcaaaagaagatgtttgtttattatttgattttagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCTCTACAACCTGGTCTTAAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAAGATGTAGTAGAGAATGGACTGATAGCAGGAGCTGTgtaagaacccacaccgtatgtcagaattatataagcttacttactgcata #### Fam160b1_ID12363_14 --> 0 - 0 Original Alignment TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca Alignment from CESAR TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca Alignment from Spaln_aa2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca Alignment from Spaln_nt2Genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca Alignment from Pairagon TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACT------GTGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca Alignment from Exonerate_protein2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca Alignment from Exonerate_coding2genome TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca Alignment from GeneWise TTCCGAGACTACTGTGCTATCTGCTCACGATGGGAGTGGCCAGGAGCCCCCAAACCACTGGAGAAGTGTGACCTAGAAGCAGCCTTCTTTGAAGGACATTTTTTGAAAGTTTTATTTGACAGAATGGGAAGAATTCTCGATCAG gtccctactcttcttacctgctatttaatcaactcttatcctctccacagTTCCGAGATTTCTGTGCAATCTGCTCACGATGGGAATGGCCAGGAGCCCCCAAACCACTG------TGTGACCTAGAAGCAGCTTTCTTTGAAGGACATTTTTTGAAAGTTTTGTATGGGCGGATGGGAAGAAATCTTGATCAAgtgtgtatttggaaagtcaaccttcattgttttcctgtaggtactaagca #### Fam178a_ID9219_2 --> 1 - 1 Original Alignment gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg tctgacattattatagctgtttcctcatcttcattgttttcttctttaagaAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATggtacatccattaatgctattcacatatggcattcatgtcttccaccaaat Alignment from CESAR gAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAg tctgacattattatagctgtttcctcatcttcattgttttcttctttaagaAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATggtacatccattaatgctattcacatatggcattcatgtcttccaccaaat Alignment from Spaln_aa2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tctgacattattatagctgtttcctcatcttcattgttttcttctttaagAAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATGgtacatccattaatgctattcacatatggcattcatgtcttccaccaaat Alignment from Spaln_nt2Genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tctgacattattatagctgtttcctcatcttcattgttttcttctttaagAAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATGgtacatccattaatgctattcacatatggcattcatgtcttccaccaaat Alignment from Pairagon GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tctgacattattatagctgtttcctcatcttcattgttttcttctttaagAAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATGgtacatccattaatgctattcacatatggcattcatgtcttccaccaaat Alignment from Exonerate_protein2genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tctgacattattatagctgtttcctcatcttcattgttttcttctttaagAAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATGgtacatccattaatgctattcacatatggcattcatgtcttccaccaaat Alignment from Exonerate_coding2genome GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tctgacattattatagctgtttcctcatcttcattgttttcttctttaagAAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATGgtacatccattaatgctattcacatatggcattcatgtcttccaccaaat Alignment from GeneWise GAAACAGTCAATCATAGATTTCTTCAAGCCAGCTGCAAAACAAG tctgacattattatagctgtttcctcatcttcattgttttcttctttaagAAAACAGTCAATCATAGATTTTTTCAAGCCAGCAGCAAAACATGgtacatccattaatgctattcacatatggcattcatgtcttccaccaaat #### Fam178a_ID9222_5 --> 2 - 0 Original Alignment gcTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcaggcTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAGA---AAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta Alignment from CESAR gcTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcaggcTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAGA---AAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta Alignment from Spaln_aa2Genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcagGCTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAGA---AAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta Alignment from Spaln_nt2Genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcagGCTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAG---AAAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta Alignment from Pairagon GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcagGCTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAG---AAAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta Alignment from Exonerate_protein2genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcagGCTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAGA---AAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta Alignment from Exonerate_coding2genome GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcagGCTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAGA---AAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta Alignment from GeneWise GCTCTAAACAGAATAAATTCTCCGACAAAAGAAAGAGGAACTCTGTGGACTCAGACCTGAAAAGCACAAAAGAACCTATCATACCAAAAGCAAGAGAGTCCTTTCTAGAGAAGCGCCCAGACACATCCCATCAGAGAGAAAAGTTTATCAGACACATTGCACTGAAGACTCCTGGTGGTGTTCTGCGCTTGGAAGACATAGCCAAGGAGCCTGAGGACGAGACAGATCGCTCTTCTGCAGACTCGGCACCTTCAAATGCTGGCCACCATTCTTCCAGGAATAGTGACCAAGTCCACTCAGCAAGTACCAAAGAGACTAAAATACAGAAACCCCACTTACCTTTACCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAACCTTCAGAAAAACAAACCGGCTGGCTCTGTGACATCAAAAGAGACAAAGCTACCTTTACTTTCCCATGTTCCAAGTGCTGTTTCCTCTCGAGTACCACTAAATGCTAAAAATTGCACTCTTCCAGTTCCTAAAAAAGATAAAGAGCGTTCCTCCTCAAAAGAACGTTCTGGGCATTCTACAGAATCCTCCAAACACAAGGAACACAGAGCAAAGACTATTAAGGCTGTTTCTAATGAATCGTCAGGGAAAAATTCTGGGGGATCTTTGCATTCAGAGTATGCCCCTCCAACAGCATCTCCCCCAGCTGCCTTGGAAGTCGTGCCGAGTGTCCCAAGCCCTGCAGCACCTTCAGATAAAGAGAGTTCAGGAAATTCCAATGCAGGTAGCAATGCACTGAAAAGGAAATTCAGGGGTGATTTTGATAGTGATGAAGAAAGTTTAGGTTACACCTTAGAGAGTGATGAGGAAGAGGAAACACTAAAATCACTGGAAGAAATAATGGCTCTGAACTTCAGTCGGACTCCTACAACTTCAGGAAAGCCTCCTGCGGTTTCCAAGGGGCTTAGATCCCAGTCGTCAGACTACATG tgtatctgtttaatgatgactgtgggtttgctgaccccaccctcccgcagGCTCCAAAGAAAATAAGTTTTCAGACAAAAGAAAGAGAAACTTTGTGGATTCAGATCTGAAAAGCACAAAAGAACCTATTATACCAGAAGCAAGAGAGTCCTTCCTAGAGAAGCACCCAGACCCATCTCATCAGAGA---AAATTTATCAAACATATTTCACTCAAAACTCCAGGTGGTGTTCTGCGCCTCAAGGACACAGCTAAGGAACCTGAGGATGAGACAGATCAGTCCTCTGCAGATTCTGCACCTTCAAATGCTGGCCACCACTCTTCAAGGAATAGTGACCAAGTCCACTCAGCAAGTCCCAAAGAGACTAAAATACAGAAACCCCATTTACCCTTTCCTCAGGAAAAATCTACAATTAAAAGAGCTAGCAATCTGCAGAAAAATAAGCCTGCAGGATCTGTGACATCAAAAGAGACAAAACTGCCCCTGCTTTCCCATGTTACAAGTGCTGTTTCCTCTCAAGTCCCACTAAATGCTAAAAATTGCACCCTTCCTGTTCCTGGAAAGGATAAAGAGCACTCCTCTTCAAAAGAACATGCTGGGCAATCTACAGAATCATCAAAACACAAGGAACACAGAGCTAAGACTATTAAGGCTGTTTCTAATGAGTCATCAGGGAAAAATTCTGGAGGATCTTTGCATTCAGAATATGCCCCTCCAACAGCATCTCCCCCAGCAGCTATAGAAGTTGTGCCAAGTGTTCCAAGCCCTGCAGCTCCTTCAGACAAAGAGCGGTCAGGTAATTCCAATGCAGGTAGCAATGCACTGAAAAGAAAGTTTCGAGATGATTTTGATAGTGATGAGGAAAGTCTCAGCTACACCTTAGAGAGTGATGAGGAAGAGGCAACACTGAAATCTTTGGAAGAAGTAATGGCACTGAACTTAAGTCGGACTCCTACAAGTTCAGGAAAGCCTCCAGCAGTATCTAGGGGGCTTAGATCTCAGTCATCAGACTACATGgtgagcggtgttgcactatttatctttgcttaatgaggcaagacaatcta #### Fam178a_ID9227_8 --> 1 - 2 Original Alignment gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCaagtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg Alignment from CESAR gGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCaa aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctaggGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCaagtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg Alignment from Spaln_aa2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAAgtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg Alignment from Spaln_nt2Genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAAgtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg Alignment from Pairagon GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAAgtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg Alignment from Exonerate_protein2genome GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAAgtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg Alignment from Exonerate_coding2genome aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctagggaatttctaaagaaattttcagttacagttgataccattcctgatcatcatccaggtgaagaaatatttaatttcctcaattctggaacgatattcaatcagtataccttagatttaagagactctggttttattggagaaagtggtgtggaaaagctcattctcaagtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg Alignment from GeneWise GGAATTTCTAAAGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTATTCTCAA aagttagctgcctcccagcctttacacatctcctgtgtgttctcttctagGGAATTTCTAAAGAAATTTTCAGTTACAGTTGATACCATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTTCCTCAATTCTGGAACGATATTCAATCAGTATACCTTAGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGGTGTGGAAAAGCTCATTCTCAAgtaggcagatcactgcaggtgttgtagtatctttccccatttgtcctatg #### Fam178a_ID9231_12 --> 1 - 0 Original Alignment tTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagtTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCTTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtaacataaagatattagtggctaattttccatttttatacatttcttca Alignment from CESAR tTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagtTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCTTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtaacataaagatattagtggctaattttccatttttatacatttcttca Alignment from Spaln_aa2Genome TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCTTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtaacataaagatattagtggctaattttccatttttatacatttcttca Alignment from Spaln_nt2Genome TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCTTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtaacataaagatattagtggctaattttccatttttatacatttcttca Alignment from Pairagon TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCTTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtaacataaagatattagtggctaattttccatttttatacatttcttca Alignment from Exonerate_protein2genome TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCTTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtaacataaagatattagtggctaattttccatttttatacatttcttca Alignment from Exonerate_coding2genome tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagttctgaaacacagaaaacactaggaggaaaagaaagtgaagactcgccttatagtcctgtattttcagctcttcctgaaaccaacattttgaatgtagttaaggtaacataaagatattagtggctaattttccatttttatacatttcttca Alignment from GeneWise TTCTGAAACACAGAAAACACTGGGGGGAAAAGAAAGTGAAGATTCACCTTATAGTCCAGTATTTTCAGCTCTTCCTGAAACCAACATTTTAAATGTGGTTAAG tgtaccactcatgttgtccaatggctctattgccccttgtgtgtccttagTTCTGAAACACAGAAAACACTAGGAGGAAAAGAAAGTGAAGACTCGCCTTATAGTCCTGTATTTTCAGCTCTTCCTGAAACCAACATTTTGAATGTAGTTAAGgtaacataaagatattagtggctaattttccatttttatacatttcttca #### Fam189a2_ID5248_9 --> 2 - 1 Original Alignment gtGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAg gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcaggtGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAagtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta Alignment from CESAR gtGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAg gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcaggtGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAagtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta Alignment from Spaln_aa2Genome GTGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAG gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcagGTGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAAgtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta Alignment from Spaln_nt2Genome GTGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAG gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcagGTGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAAgtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta Alignment from Pairagon GTGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAG gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcagGTGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAAgtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta Alignment from Exonerate_protein2genome GTGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAG gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcagGTGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAAgtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta Alignment from Exonerate_coding2genome GTGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAG gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcagGTGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAAgtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta Alignment from GeneWise GTGGGGCTCTTACTAACACGACTGGTGAAGAAAACACATCTGGATCAACTCCTATTCTCACTCTGGTTCAGCCTCCGAGAAGCCGGAGAGCTCTCCCCCTTCTGAGGACAAGATCAAAGAGCGACCCTGTGCTTCACCATTCGGAGGAGAGAG gcaatccaagtgttttacagcagcatgcagatgcacattttgctttgcagGTGGTGCACTCACCAACACTACTGGTGAAAAAAACACACCAGGATCAACTCCTATTCTCACCCTGGTTGAGCCACCAAGGAGCCAGAGGGCTCTCCCCCTTCTGAGGACAAGATCAAAAAGTGACCCAGTCCTGCACCATTCAAAGGAGAGAAgtaagtgcactccttcaagctgcccatagaatgccaatttcaaacattta #### Fam189a2_ID5250_8 --> 0 - 1 Original Alignment GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAggtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca Alignment from CESAR GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAg gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAggtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca Alignment from Spaln_aa2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAGgtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca Alignment from Spaln_nt2Genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAGgtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca Alignment from Pairagon GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAGgtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca Alignment from Exonerate_protein2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAGgtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca Alignment from Exonerate_coding2genome GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAGgtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca Alignment from GeneWise GAGTCTTCATTCCAAATGCCAGAAGGACCAGAAACTGCTGCGAGCCCAGCAGAGCCAGTTTGCACGCAGATAACTCAAG gagcaagaatcaaaaaataatgtcccctaccctctctcctgttccctcagGAAACCTCATTCCAAATGCCCGTAGGACCAGAAACTGCTGCAAGCCCCACGGAGCCAGTTTGTACACAGATTACCCAAGgtgagcactgttatatcatgccatgggaatagagaggtctatagaggaca #### Fam189a2_ID5257_4 --> 0 - 0 Original Alignment GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg Alignment from CESAR GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg Alignment from Spaln_aa2Genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg Alignment from Spaln_nt2Genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg Alignment from Pairagon GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg Alignment from Exonerate_protein2genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg Alignment from Exonerate_coding2genome GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg Alignment from GeneWise GTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAATGCACAGACAAAGAAAATGCCTTGAAACTCTTCCCGGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAG ttactgtgtgcaatcttcctccccagagttcaattattttgattttttagGTGGACTTAGGTGAAGGCAAGATCTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGTACAGACAAAGAAAATGCCTTGAAACTCTTCCCAGTCCAGCCTTGTAGTGCTGTGCACCTTCTGCTTAAGgtaagatggccaatctgtagccttacagccccagcaagctcaagttactg #### Fam45a_ID13336_4 --> 1 - 1 Original Alignment aATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAg tattctgtatattacccccactttcacccatcttctgttctttcctttagaTTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAggtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct Alignment from CESAR aATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAg tattctgtatattacccccactttcacccatcttctgttctttcctttagaTTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAggtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct Alignment from Spaln_aa2Genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacccccactttcacccatcttctgttctttcctttagATTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAGgtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct Alignment from Spaln_nt2Genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacccccactttcacccatcttctgttctttcctttagATTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAGgtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct Alignment from Pairagon AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacccccactttcacccatcttctgttctttcctttagATTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAGgtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct Alignment from Exonerate_protein2genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacccccactttcacccatcttctgttctttcctttagATTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAGgtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct Alignment from Exonerate_coding2genome AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacccccactttcacccatcttctgttctttcctttagATTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAGgtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct Alignment from GeneWise AATATATTTGAAATATGGAAGTCCGGTTAAAATGATGGAGAGTTACATTGCAGTTCTCACCAAGGGGATCTGCCAGAGTGAAGAAAATGGCTCTTTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATACCTTGCTGGCTCCATCAAAG tattctgtatattacccccactttcacccatcttctgttctttcctttagATTCTATTTAAAGTATGGAAGCTCAGTTAAAATGATGGAGAGCTACATAGCGGTCCTTACCAAGGGGATCTGCCAAAGTGAAGAAAATGGCTCATTCCTTAGTAGAGACTTTGATGGTCGAAAGGCATATCTTGCTGGCTCCAAAAAAGgtgagaagaacagatgaccattcaaacagcatatgtggagcacaccctct #### Fam45a_ID13337_5 --> 2 - 2 Original Alignment acATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCag atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagacATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCaggtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct Alignment from CESAR acATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCag atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagacATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCaggtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct Alignment from Spaln_aa2Genome ACATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCAG atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagACATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCAGgtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct Alignment from Spaln_nt2Genome ACATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCAG atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagACATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCAGgtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct Alignment from Pairagon ACATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCAG atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagACATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCAGgtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct Alignment from Exonerate_protein2genome ACATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCAG atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagACATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCAGgtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct Alignment from Exonerate_coding2genome ACATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCAG atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagACATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCAGgtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct Alignment from GeneWise ACATTGTATCTCAATTTGGAATGGAAACTGTTATTTTACACACAGCATTGATGCTGAAAAAACGAATTGTTGTCTATCACCCCAAAATAGAAGCTGTCCAGGAGTTCACCAG atattaagtatcagaccaaactgctcaactgacaggaacctttgtctcagACATTGTATCCCAATTTGGAATGGAAACTGTTATTCTACATACAGCCTTAATGCTGAAAAAGCAAATTGTCGTTTACCAACCTAAAATAGAGGCTGTCCAAGAGTTCACCAGgtgaatccattcattattaaggggagcaaatgctctcccttgatgcttct #### Fam45a_ID13338_6 --> 1 - 1 Original Alignment gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg taacagttttcatccagcaagtccttcttttttttcttttatggttgcagaACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAggtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc Alignment from CESAR gACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAg taacagttttcatccagcaagtccttcttttttttcttttatggttgcagaACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAggtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc Alignment from Spaln_aa2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG taacagttttcatccagcaagtccttcttttttttcttttatggttgcagAACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAGgtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc Alignment from Spaln_nt2Genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG taacagttttcatccagcaagtccttcttttttttcttttatggttgcagAACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAGgtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc Alignment from Pairagon GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG taacagttttcatccagcaagtccttcttttttttcttttatggttgcagAACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAGgtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc Alignment from Exonerate_protein2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG taacagttttcatccagcaagtccttcttttttttcttttatggttgcagAACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAGgtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc Alignment from Exonerate_coding2genome GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG taacagttttcatccagcaagtccttcttttttttcttttatggttgcagAACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAGgtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc Alignment from GeneWise GACTCTGCCTGCCCTGGTGTGGCATCGACAGGATTGGACCATCCTGCATTCTTACATGCACCTTCATGCTGAAGAGCTAGAAGGCCTACAGATGTGCACAG taacagttttcatccagcaagtccttcttttttttcttttatggttgcagAACACTACCTGCCCTAGTTTGGCATCAACAGGACTGGACCATCCTGCATTCTTACATGCACCTCCATGCTGAAGAGCTAGAAGGCTTACAGATGTGCACAGgtcagtggaaatatcccaggggcgaagtattctgcatgcatagattgatc #### Fas_ID6922_3 --> 2 - 1 Original Alignment gtAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATg cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctaggaAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATggtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat Alignment from CESAR gtAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATg cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctaggaAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATggtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat Alignment from Spaln_aa2Genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctagGAAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATGgtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat Alignment from Spaln_nt2Genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctagGAAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATGgtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat Alignment from Pairagon GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctagGAAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATGgtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat Alignment from Exonerate_protein2genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctagGAAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATGgtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat Alignment from Exonerate_coding2genome GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctagGAAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATGgtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat Alignment from GeneWise GTAAAAAAAAAGTTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGCGCCCCATGCACAGAAGGGAAGGAGTACATGGACAAGAACCATTATGCTGATAAATGCAGAAGATGCACACTCTGCGATGAAGAGCATG cctctttttcttactaatccttgcttagcgtgcgtatgtaccctatctagGAAAAATAAGTATTGAGGACTGCAAAATGAATGGGGGTACACCAACCTGTGACCCATGCACAAAAGGGAAGAAGTACATGGACAAGAACCATTATTCTGATAAGTGCAGAACATGCACCCTCTCTGATGAAGAGCATGgtacccgtctagacatgttctgtaatggccaacactgtgactcaccatat #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTg tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc #### Fgf8_ID9565_4 --> 0 - 1 Original Alignment GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCg gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCggtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga Alignment from CESAR GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCg gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCggtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga Alignment from Spaln_aa2Genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCGgtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga Alignment from Spaln_nt2Genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCGgtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga Alignment from Pairagon GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCGgtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga Alignment from Exonerate_protein2genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCGgtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga Alignment from Exonerate_coding2genome GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCGgtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga Alignment from GeneWise GTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAGCTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAAGACGGAGACCCCTTCG gagtcatatcattatgctgtggtcatgggatatatgatgtttcgttgcagGTCACTGTTCAGTCCTCACCTAATTTTACACAACATGTGAGGGAGCAGAGCCTGGTGACAGATCAGCTCAGCCGCCGCCTCATCCGCACTTACCAGCTCTACAGCCGCACAAGCGGGAAGCACGTGCAGGTCCTAGCTAACAAGCGCATCAACGCCATGGCAGAAGACGGGGACCCCTTCGgtgagttgcactaacgtatcctgaagaggctgaagtcaatttcaccttga #### Fibp_ID1006_3 --> 1 - 0 Original Alignment gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg Alignment from CESAR gTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcaggTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg Alignment from Spaln_aa2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg Alignment from Spaln_nt2Genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg Alignment from Pairagon GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg Alignment from Exonerate_protein2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg Alignment from Exonerate_coding2genome GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg Alignment from GeneWise GTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAAGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAG ccatttccccactggatgtttgtaaccagagttttctggtgattcttcagGTACTACACCTTTGATGAGGCCTTTGTTCGGGAGGTCTTGGGCAAGAAGCTGTCCAAGGGTACCAAGAAGGACCTGGATGACATCAGCACCAAAACAGGAATTACTCTCAAGAGCTGCCGGAGGCAGgtgagtaatacccttgatctgactcatctggcccactcatttagctagtg #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAG-TG-----CAATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAGTGC------AATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAGTGC------AATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcacacacaaaaagctggagggaggatccctctattatttttttaaacagAATCTGTCTAGAGGTCTGGTGAATGTGGCTGCCAAGTGC------AATAAGGATGTTAGAGTCTTATTTGTAGACCTTTTGGAGAGGgtgaccagcggtaagatgtgttgcagtcatgggaccagtggcagtgcttg #### Fra10ac1_ID7565_5 --> 1 - 2 Original Alignment gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccaggGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTtggtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa Alignment from CESAR gGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTtg ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccaggGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTtggtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa Alignment from Spaln_aa2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccagGGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa Alignment from Spaln_nt2Genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccagGGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa Alignment from Pairagon GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccagGGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa Alignment from Exonerate_protein2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccagGGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa Alignment from Exonerate_coding2genome GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccagGGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa Alignment from GeneWise GGAGAATGATAAGACAGATCTGGATGTTATACGAGAAAATCATAGATTCCTTTGGAATGAGGAGGATGAAGCAGATATGACTTG ggtaaatcagctaaattaaggcttaatgggcccttttttcttcgtcccagGGAGAATGATAAGACAGATCTTGATGTCATACGCGAAAATCATAGGTTTCTTTGGAATGAGGAGGAGGAAGCAGATATGACTTGgtgaggagacttgattatgtaatggcagcgaatgagtctgttattgtgaa #### Fra10ac1_ID7566_4 --> 0 - 2 Original Alignment TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGgg atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAgggtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt Alignment from CESAR TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGgg atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAgggtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt Alignment from Spaln_aa2Genome TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGGG atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAGGgtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt Alignment from Spaln_nt2Genome TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGGG atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAGGgtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt Alignment from Pairagon TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGGG atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAGGgtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt Alignment from Exonerate_protein2genome TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGGG atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAGGgtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt Alignment from Exonerate_coding2genome TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGGG atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAGGgtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt Alignment from GeneWise TATCAAAGGCACACCAAGTTTGTAAACGACTATATTTTGTACTATGGTGGCAAAAGAGAGGACTTTAAGCGGTTGGG atttaagggttgccttaaccaaagcccataaattttgcctattcttttagTATCAAAGGCACACCAAATTTGTCAATGACTATATTTTGTACTATGGTGGCCAAAGAGAGGACTTCAAATGGCTAGGgtacaggtgattcaaatggcaatggcatatgatgatctgggcactgttgt #### Fra10ac1_ID7568_2 --> 1 - 2 Original Alignment gACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACag cactctttggaaggacacccagatgacagagcaaataaagtgttttctaggACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACaggtgagtcgttttttcccatacaacagacaaagttcataccaattattatc Alignment from CESAR gACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACag cactctttggaaggacacccagatgacagagcaaataaagtgttttctaggACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACaggtgagtcgttttttcccatacaacagacaaagttcataccaattattatc Alignment from Spaln_aa2Genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG cactctttggaaggacacccagatgacagagcaaataaagtgttttctagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtgagtcgttttttcccatacaacagacaaagttcataccaattattatc Alignment from Spaln_nt2Genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG cactctttggaaggacacccagatgacagagcaaataaagtgttttctagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtgagtcgttttttcccatacaacagacaaagttcataccaattattatc Alignment from Pairagon GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG cactctttggaaggacacccagatgacagagcaaataaagtgttttctagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtgagtcgttttttcccatacaacagacaaagttcataccaattattatc Alignment from Exonerate_protein2genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG cactctttggaaggacacccagatgacagagcaaataaagtgttttctagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtgagtcgttttttcccatacaacagacaaagttcataccaattattatc Alignment from Exonerate_coding2genome GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG cactctttggaaggacacccagatgacagagcaaataaagtgttttctagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtgagtcgttttttcccatacaacagacaaagttcataccaattattatc Alignment from GeneWise GACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTGCTCGACAG cactctttggaaggacacccagatgacagagcaaataaagtgttttctagGACAGTAGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAGGAAAGGCATGGAAAGGTGGCCCATAAACAAGTTGCTGCAGACTTACTTGACAGgtgagtcgttttttcccatacaacagacaaagttcataccaattattatc #### Frmd8_ID1283_5 --> 0 - 2 Original Alignment ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCT---CGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGag agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCcggtattgatttagacaacaaggttaacataggcatttggacagaaaattac Alignment from CESAR ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGG---TACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGag agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCcggtattgatttagacaacaaggttaacataggcatttggacagaaaattac Alignment from Spaln_aa2Genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCT---CGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCCGgtattgatttagacaacaaggttaacataggcatttggacagaaaattac Alignment from Spaln_nt2Genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGG---TACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCCGgtattgatttagacaacaaggttaacataggcatttggacagaaaattac Alignment from Pairagon ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCT---CGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCCGgtattgatttagacaacaaggttaacataggcatttggacagaaaattac Alignment from Exonerate_protein2genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCT---CGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCCGgtattgatttagacaacaaggttaacataggcatttggacagaaaattac Alignment from Exonerate_coding2genome ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCT---CGGTACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCCGgtattgatttagacaacaaggttaacataggcatttggacagaaaattac Alignment from GeneWise ATCCATGATGAGGAGGTCTTGCGGCTGCTCTATGAGGAAGCCAAGGGCAATGTGCTGACCGCTCGG---TACCCTTGTGACTTGGAGGACTGCGAGGTGCTGGGTGGCCTTGTGTGCCGTGTGCAGCTTGGGCCCTACCAGCCTGGCCAGCCTGCCGCCTGCACTCTGAG agtcagttcagctcctctggaccatgcttgtttttacctccttcctatagATCTATGATGAAGAGACCTTGCGACTGCTCTATGAAGATGCCAAGGGCACAGTACTGGCTGCTCGACGATACCCTTGTGATTTAGAGGACTGCAAAGTGTTAGGTGACCTTGTGCGCCGTGTGCAGCTTGGTCCATATCAGCCCGGCCAACCTGCTTCCTGCACCCTCCGgtattgatttagacaacaaggttaacataggcatttggacagaaaattac #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagatGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagatGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagATGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagATGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg Alignment from Pairagon ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagATGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg Alignment from Exonerate_protein2genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagATGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg Alignment from Exonerate_coding2genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagATGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg Alignment from GeneWise ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG tggctgcatgagcctaggtaactatgataaacctgctttatgttcttcagATGAACCTTCCCTTCACTTCCGAAGGAATGTCTTTTTCCCCAGACAGCGTGAGCTCCAGgtaattcaggacttggggaagatcacagtgttcgagtatgtccatgcctg #### Frmd8_ID1285_3 --> 2 - 1 Original Alignment agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATG------g tggccatggagatatcagctaggtagatttcccttttcttctcttctcagagGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTCTGACGAA---------ATGGACATGggtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa Alignment from CESAR agGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGg tggccatggagatatcagctaggtagatttcccttttcttctcttctcagagGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTCTGAC---GAAATGGACATGggtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa Alignment from Spaln_aa2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatggagatatcagctaggtagatttcccttttcttctcttctcagAGGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTCT---GACGAAATGGACATGGgtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa Alignment from Spaln_nt2Genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatggagatatcagctaggtagatttcccttttcttctcttctcagAGGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTC---TGACGAAATGGACATGGgtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa Alignment from Pairagon AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatggagatatcagctaggtagatttcccttttcttctcttctcagAGGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTC---TGACGAAATGGACATGGgtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa Alignment from Exonerate_protein2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatggagatatcagctaggtagatttcccttttcttctcttctcagAGGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTCT---GACGAAATGGACATGGgtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa Alignment from Exonerate_coding2genome AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatggagatatcagctaggtagatttcccttttcttctcttctcagAGGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTCT---GACGAAATGGACATGGgtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa Alignment from GeneWise AGGTGCAATTGAAACCCAAGCACCAGCCCTATAAACTGGGCCGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAACGCCTCCGATGATGATGTCGCCATGG tggccatggagatatcagctaggtagatttcccttttcttctcttctcagAGGTGCAACTAAAGCCAAAACACCAGCCCTACAAACTGGGTCGACAGTGGCTAGAGCTGGTGCTGCGCTTCACAAAAGCTTCTGACGAA---ATGGACATGGgtgagcaaattggaccagggtgccttgaaggaagctttagagataattaa #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC tgctggttaggactaatgactaggatgattccattctgtctttctcccagAAACCCGACCGTGAAGACTGGGAGAGTGGGCTGAATGGAATGGAATGTGCGCTACACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCAACTGACAAGAATGACCCCCACgtgagttccagttggttggaggagatgaattgctattgcttggaggaaat #### Fxn_ID5299_2 --> 0 - 2 Original Alignment CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAaggtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct Alignment from CESAR CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAag taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAaggtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct Alignment from Spaln_aa2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAAGgtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct Alignment from Spaln_nt2Genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAAGgtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct Alignment from Pairagon CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAAGgtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct Alignment from Exonerate_protein2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAAGgtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct Alignment from Exonerate_coding2genome CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAAGgtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct Alignment from GeneWise CATTTGAACCTCCACTACCTCCAGATTCTGAACATCAAAAAGCAGAGCGTCTGCGTGGTGCATTTGAGGAACTTGGGGACATTGGACAACCCAAG taccagaagatatactagtttgaaaattacactcatgtttccccttttagCATTTAAACCTCCATTACCTGCAGATATTAAACATCAAAAAGCAGAGTGTTTGTGTGGTGCATCTGAGGAACTTAGGTACATTGGATAATCCAAGgtgagtagaagccattctaacctcatgcttctcaaggacctatgacctct #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Exonerate_protein2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacATGTAGACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from Exonerate_coding2genome GGGAAGACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacATGTAGACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc Alignment from GeneWise ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tctgagtacattggtgccagaaggtccttccccattctctgtacatgtagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGTCCTCCAGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtaaggatgtttttctttcttacaaataaatgctacaaagtattacactc #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata #### Gbf1_ID9792_11 --> 2 - 0 Original Alignment gcACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGAC---CGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaaggcACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt Alignment from CESAR gcACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACAC---GACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaaggcACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt Alignment from Spaln_aa2Genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACAC---GACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt Alignment from Spaln_nt2Genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGA---CCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt Alignment from Pairagon GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCAC---ACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt Alignment from Exonerate_protein2genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACAC---GACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt Alignment from Exonerate_coding2genome GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACAC---GACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt Alignment from GeneWise GCACAGCTTTGGTTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGAC---CGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATTCCAG aatacagacaaagtgtgggctagactgcgctctcaattttgttttacaagGCACTGCTCTGGTCCCTTATGGGGTCCCTTGCATTCATGAGCTCTTCCGCTTTCTTATTTCTCTCACAAACCCACATGATGACCAACATAACACTGAGGTGGTAATCCATATGGGCTTGCATTTTTTGACAGTGGCTCTTGAGTCAGCACCTTTGACACAGTGCCAGACCCTCCTGGGTCCCATTAAGGATGAGATGTGCCAACATCTATTCCAGgtgaggagttaacaactttttgtcatcaccttctagcactagttatcttt #### Gbf1_ID9794_13 --> 0 - 0 Original Alignment ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTTA---GACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag Alignment from CESAR ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTTA---GACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag Alignment from Spaln_aa2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTTA---GACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag Alignment from Spaln_nt2Genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTT---AGACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag Alignment from Pairagon ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTT---AGACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag Alignment from Exonerate_protein2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTTA---GACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag Alignment from Exonerate_coding2genome ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTTA---GACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag Alignment from GeneWise ATGTACATCAAAAAGCTCATGGAGATCATCACTGTTGAAAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCGCTGGAGGCCGTTGTTCAGCTCTGGCGTATCCCCAGCTTCGTCACTGAGCTCTACATCAACTATGATTGTGACTACTATTGCTCCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAG atgtatttgcagaaagagcaccttccaactgaccctctggcttcccgcagATGTATATCAAAAGGCTGATGGAGATCATCACCATTGAAAACCCCAAAATGCCTTATGAGATGAAAGAGATGTCGCTAGACGCTGTTATCTGGCTCTGGCGTATCCCCAGCTCTGTCACTGAGATCTACATCAACTATGAGTGTGACTATTATTGTTCAAATCTCTTA---GACCTCACTAAGCTACTTTCTAAGgtaatcctgcttaccttaatgaactgtggagtattttcaatcaataacag #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct #### Gbf1_ID9798_17 --> 0 - 2 Original Alignment CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc Alignment from CESAR CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc Alignment from Spaln_aa2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc Alignment from Spaln_nt2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc Alignment from Pairagon CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc Alignment from Exonerate_protein2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc Alignment from Exonerate_coding2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc Alignment from GeneWise CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaacttcagaaggatttaaacaattgcctctacctcagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCACCTCACCATTCCTATGGATAACACAGAAGTTGCCCAATGGCTCCAAGGAAAGCCTCGGTTAGACAAGAAGATGATCGGAGAATTTGTGAGTGACCGTAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgagtaaggattttagccattgggctaagtcagctagcacatgaatatc #### Gbf1_ID9801_20 --> 0 - 2 Original Alignment GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaa acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCaagtaagttactggagactgaaatatccaaagagtttacattactaactaaa Alignment from CESAR GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCaa acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCaagtaagttactggagactgaaatatccaaagagtttacattactaactaaa Alignment from Spaln_aa2Genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCAAgtaagttactggagactgaaatatccaaagagtttacattactaactaaa Alignment from Spaln_nt2Genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCAAgtaagttactggagactgaaatatccaaagagtttacattactaactaaa Alignment from Pairagon GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCAAgtaagttactggagactgaaatatccaaagagtttacattactaactaaa Alignment from Exonerate_protein2genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCAAgtaagttactggagactgaaatatccaaagagtttacattactaactaaa Alignment from Exonerate_coding2genome GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCAAgtaagttactggagactgaaatatccaaagagtttacattactaactaaa Alignment from GeneWise GAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA acattgggtatctgatcaataccaagaaacatttttttttcaacctgcagGACTTTCGCAAAAACTCAAAAGGTGTAAATGGAGGCAGGGACTTTGAACAGGACATCCTCAAAGACATGTACCATCCCATCAAgtaagttactggagactgaaatatccaaagagtttacattactaactaaa #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACcagtactgtttgattaataagtgaggcctagagaagcagatatgatcagttc Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACcagtactgtttgattaataagtgaggcctagagaagcagatatgatcagttc Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACCAgtactgtttgattaataagtgaggcctagagaagcagatatgatcagttc Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACCAgtactgtttgattaataagtgaggcctagagaagcagatatgatcagttc Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACC--------------------------------------------------- taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACCAGTACTGTTTGATTAATAAGTGAGGCCTAGAGAAGCAGATATGATCAGTTC Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACCAgtactgtttgattaataagtgaggcctagagaagcagatatgatcagttc Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACCAgtactgtttgattaataagtgaggcctagagaagcagatatgatcagttc Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG taagtctgcctatgactgaccctttcaatgttcttctacgtcttttccagGTAGAAGATTTTGTAGACCCCAATGGCAAGATCTCTTTACAACATGAGGAGATACCATCAAACCAgtactgtttgattaataagtgaggcctagagaagcagatatgatcagttc #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagaGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagaGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagcagatatgatcagttctatggccagccaccaacccatttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACTTTGAGTGGCCCTGAACAGTCAAGTGTCCAGGGTCCATCTACAGAGAACCAAGAGGCTAAAAGGGTGGCCTTAGATTGTATTAAGgtgagatgttgacccaatgtgacaagggtaatcatgcagggataacatag #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACaggtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACaggtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc #### Gbf1_ID9810_29 --> 0 - 1 Original Alignment GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGg ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAagtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc Alignment from CESAR GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGg ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAagtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc Alignment from Spaln_aa2Genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAAgtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc Alignment from Spaln_nt2Genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAAgtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc Alignment from Pairagon GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAAgtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc Alignment from Exonerate_protein2genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAAgtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc Alignment from Exonerate_coding2genome GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAAgtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc Alignment from GeneWise GTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGG ggagtgaggactgttccctacccatcccattgcatttatgtttccaacagGTCCTTCTCTCACTGCATGTCCTATTGCTAATAAAGCCCAGTGTGTTGTCCAGAGTCACCCACCAAGTTGCATATGGGTTGCATGAACTCCTCAAGGCCAATGCTGGCAATATCCACATGGGGGATGACTGGCCAACTCTCTTCACATTACTGAAGTGCATTGGTTCAGGTGTGAAGCCACCAGATGCCCTTCAAGCCACTGCCAGAGCTGATGCTCCTGATGCAAgtaatgctttccctaggaaaagctgtaggcactagatagccatataggcc #### Gbf1_ID9811_30 --> 2 - 0 Original Alignment gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacaggaGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat Alignment from CESAR gaGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacaggaGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat Alignment from Spaln_aa2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacagGAGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat Alignment from Spaln_nt2Genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacagGAGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat Alignment from Pairagon GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacagGAGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat Alignment from Exonerate_protein2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacagGAGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat Alignment from Exonerate_coding2genome GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacagGAGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat Alignment from GeneWise GAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCGGCCACAGATGCTGACATGGTCAACAGTGGTTGGTTAGTG tagtttagcaggataccccaaataaccttggcccctcctctgatccacagGAGCACAGTCACATAGTGAGATCCCCTTATACCATCAAAATGATGTAAGTCTTGATCGAGGGTACAGTACTGACTCAGAGGTATACACAGACCAGGGTAGGCCAGGCAAAATACATCGATCAGCCACTGATGCTGACATGGTGAACAGTGGTTGGCTGGTGgtgggcttcctgtcatttcaggtaaacaaatgcattgtaattcttagaat #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacaggaATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG cacccgaacacacacttgatcacttacatatttaatatttgaatttacagGAATTGCTTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCTTGACATATCTACAGCATGCACTTCTCGTGCACGATCTGCAGAAACTGGATGCCCTGGAGTGGGAATCTTGTTTTAACAAGgtgagtcttcaagtggacagaagtccaaataaccctacctgggctcaaga #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAggtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAggtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAGgtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAGgtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAGgtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAGgtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAGgtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gtatccaatttaaagcactacttctcctctttcttatttctttatggcagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGATACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAAGgtaagcgcaaatttgatagccaaccactttgttcactatactaggaacta #### Gda_ID4904_2 --> 0 - 2 Original Alignment ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACca tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACcagtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca Alignment from CESAR ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACca tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACcagtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca Alignment from Spaln_aa2Genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACCAgtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca Alignment from Spaln_nt2Genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACCAgtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca Alignment from Pairagon ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACCAgtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca Alignment from Exonerate_protein2genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACCAgtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca Alignment from Exonerate_coding2genome ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACCAgtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca Alignment from GeneWise ATAGTGTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAACTGAGCCACCA tgcttttattcattcctcctctaaaagataaagttttctttttcttatagATAGTGTTTCTGGAGGAGTTATCTCAGCAAGAAAAACTGGCCAAGGAGTGGTGCTTTAAGCCATGTGATATCAGAGAACTGAGCCACCAgtaagttttactaagtcatttcgcttttactgaaaacagtgtaaatttca #### Gldc_ID6390_24 --> 0 - 0 Original Alignment ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc Alignment from CESAR ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc Alignment from Spaln_aa2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc Alignment from Spaln_nt2Genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc Alignment from Pairagon ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc Alignment from Exonerate_protein2genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc Alignment from Exonerate_coding2genome ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc Alignment from GeneWise ATGTCTCCACACTCCTTGACCTGTGTCACATCCTCCTGCTGGGATCGGCCGTATTCTAGAGAGGTAGCAGCATTTCCACTG actatactttctacaggaactaattgttctgctgtccactcccctcacagATGTCGCCACATTCCTTGATCTGTGTCACTTCCTCCTGCTGGGATCAGCCCTATTCCCGTGAGGTAGTTGCATTCCCACTGgtaaggcctctaggtgaattaactcaacaatggagttatcttgaacaagc #### Gldc_ID6400_15 --> 0 - 2 Original Alignment CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACaggtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac Alignment from CESAR CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACag gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACaggtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac Alignment from Spaln_aa2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACAGgtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac Alignment from Spaln_nt2Genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACAGgtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac Alignment from Pairagon CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACAGgtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac Alignment from Exonerate_protein2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACAGgtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac Alignment from Exonerate_coding2genome CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACAGgtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac Alignment from GeneWise CCCATCACCTGGAGAGAATTTGCCAACATCCACCCCTTTGTGCCGCTGGACCAAGCCCAGGGATACCAACAGCTTTTCCAAGGGCTGGAGAAGGATCTGTGTGAGATCACAGGCTACGACCGAGTCTCATTCCAGCCAAACAG gttcttgagtaaatcactagtgcttgttccccctgccccctgccctgcagCCTATCACATGGAGAGAATTTGCCAACATCTACCCATTTGTACCACTAGATCAAGCCCATGGGTACCAACAACTTTTTCAAGGGTTGGAAAAAGATCTGTGCGAGATCACAGGTTATGACCAAGTCTCGTTCCAATCAAACAGgtgaggggcagcacgtctttttatggttggagtttaaaattgtccttcac #### Gldc_ID6405_10 --> 2 - 0 Original Alignment ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagggGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt Alignment from CESAR ggCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagggGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt Alignment from Spaln_aa2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt Alignment from Spaln_nt2Genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt Alignment from Pairagon GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt Alignment from Exonerate_protein2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt Alignment from Exonerate_coding2genome GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt Alignment from GeneWise GGCTCAAGCGAGCAGGACACCAACTCCAGCATGACCTGTTCTTTGACACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGGAGGTGCTGGGCAGAGCAGCTCAGAGGCAAATCAACTTTCGACTCTTCGATGACGGCACA ttggagtgcaaagcaatgttgaataaaaggtgtccactttgtctccgcagGGGTCAAACGAGCTGGACATCAACTCCAGCATGACCTGTTCTTTGATACTTTGAAGGTTCAGTGTGGCTGCTCAGTGAAGAAGCTGCTGTGTAGGGCAGCTCAGAGACAGATCAATCTTCAACTCTTTGATGATGGCACAgtgagtcaatattagtctattcggtcaatcatctctgatctgttggacgt #### Gldc_ID6411_4 --> 1 - 2 Original Alignment gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag aaaacaggttttagagcgactcatgattcttttcatttttccaactctaggGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACaggtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga Alignment from CESAR gGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACag aaaacaggttttagagcgactcatgattcttttcatttttccaactctaggGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACaggtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga Alignment from Spaln_aa2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG aaaacaggttttagagcgactcatgattcttttcatttttccaactctagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga Alignment from Spaln_nt2Genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG aaaacaggttttagagcgactcatgattcttttcatttttccaactctagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga Alignment from Pairagon GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG aaaacaggttttagagcgactcatgattcttttcatttttccaactctagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga Alignment from Exonerate_protein2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG aaaacaggttttagagcgactcatgattcttttcatttttccaactctagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga Alignment from Exonerate_coding2genome GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG aaaacaggttttagagcgactcatgattcttttcatttttccaactctagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga Alignment from GeneWise GGTCACCCAGTACACTCCGTATCAGCCAGAGGTGTCCCAGGGGAGGCTGGAGAGTTTACTCAACTACCAGACCATGGTGTCTGACATCACAGGCTTGGACATGGCCAACGCTTCCCTGCTGGATGAGGCAACCGCGGCTGCAGAGGCGATGCAACTGTGCCACAG aaaacaggttttagagcgactcatgattcttttcatttttccaactctagGGTTACCCAGTATACCCCTTACAAGCCAGAGGTGTCCCAGGGTAGGCTGGAGAGTCTACTCAACTACCAGACCATGGTGTCTGACATCACTGGCTTAGACATGGCAAATGCTTCCTTACTTGATGAAGCAACAGCAGCTGCTGAGGCAATCCAACTGTGTCACAGgtaagagcttgtgtaggagtgcctgccaagcaccaggacaccctgtctga #### Gldc_ID6414_3 --> 2 - 2 Original Alignment gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tttggtattctgacatgccaggaacctgttcttctcacttctttcctcaggtGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGAtggtagggcatctatcctccacttgttcacatcaatattagggccactgtcc Alignment from CESAR gtGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGAtg tttggtattctgacatgccaggaacctgttcttctcacttctttcctcaggtGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGAtggtagggcatctatcctccacttgttcacatcaatattagggccactgtcc Alignment from Spaln_aa2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttggtattctgacatgccaggaacctgttcttctcacttctttcctcagGTGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGATGgtagggcatctatcctccacttgttcacatcaatattagggccactgtcc Alignment from Spaln_nt2Genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttggtattctgacatgccaggaacctgttcttctcacttctttcctcagGTGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGATGgtagggcatctatcctccacttgttcacatcaatattagggccactgtcc Alignment from Pairagon GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttggtattctgacatgccaggaacctgttcttctcacttctttcctcagGTGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGATGgtagggcatctatcctccacttgttcacatcaatattagggccactgtcc Alignment from Exonerate_protein2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttggtattctgacatgccaggaacctgttcttctcacttctttcctcagGTGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGATGgtagggcatctatcctccacttgttcacatcaatattagggccactgtcc Alignment from Exonerate_coding2genome GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttggtattctgacatgccaggaacctgttcttctcacttctttcctcagGTGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGATGgtagggcatctatcctccacttgttcacatcaatattagggccactgtcc Alignment from GeneWise GTGAGAATGAAATCCTCGAGACTCTGCATGCCATTGCAAGCAAGAACCAGATCTGGAGGTCGTATATTGGCATGGGCTATTACAACTGCTCGGTGCCCCAGACCATTTTGCGGAACTTACTGGAGAATTCTGGATG tttggtattctgacatgccaggaacctgttcttctcacttctttcctcagGTGAGAATGATATCCTTGAGACTTCACATGCAATTGCCAGTAAGAACCAGATTTGGAGGTCCTATGTTGGTATGGGCTATTACAACTGTTCAGTGCCCCAGACCATATTGCGGAACTTGCTGGAGAACTCTGGATGgtagggcatctatcctccacttgttcacatcaatattagggccactgtcc #### Gm815_ID5778_2 --> 0 - 1 Original Alignment TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt acatttatgacattacaccatttcatttagctgtctctctacacccctagTCTTTAGGGACAATGCTTCTATGC------------------------------------------------------------TCACAGACT------CACCACtgtaagtaaaactggtggactcaaaagctcagtagttaatggtgacggctc Alignment from CESAR TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACt acatttatgacattacaccatttcatttagctgtctctctacacccctagTCTTTAGGGACAATGCTTCTATGC------------------------------------------------------------TCACAGACT------CACCACtgtaagtaaaactggtggactcaaaagctcagtagttaatggtgacggctc Alignment from Spaln_aa2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCAT acatttatgacattacaccatttcatttagctgtctctctacacccctagTCTTTAGGGACAATGCTTCTATGCTCACAGACTCACCACTGTAAgtaaaactggtggactcaaaagctcagtagttaatggtgacggctc Alignment from Spaln_nt2Genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCAT acatttatgacattacaccatttcatttagctgtctctctacacccctagTCTTTAGGGACAATGCTTCTATGCT-CACAGACTCAC---CACTgtaagtaaaactggtggactcaaaagctcagtagttaatggtgacggctc Alignment from Pairagon TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCATGGGATTCCAGAACACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACT acatttatgacattacaccatttcatttagctgtctctctacacccctagTCTTTAGGGACAATGCTTCTATGCT------------------------------------------------------------CACAGACT------CACCACTgtaagtaaaactggtggactcaaaagctcagtagttaatggtgacggctc Alignment from Exonerate_protein2genome TCCTTAGGAACGATGCTTCTGTGCTGCGTAGAAGCCCATGCCAT acatttatgacattacaccatttcatttagctgtctctctacacccctagTCTTTAGGGACAATGCTTCTATGCTCACAGACTCACCACTGTAAgtaaaactggtggactcaaaagctcagtagttaatggtgacggctc Alignment from Exonerate_coding2genome acatttatgacattacaccatttcatttagctgtctctctacacccctagtctttagggacaatgcttctatgctcacagactcaccactgtaagtaaaactggtggactcaaaagctcagtagttaatggtgacggctc Alignment from GeneWise acatttatgacattacaccatttcatttagctgtctctctacacccctagtctttagggacaatgcttctatgctcacagactcaccactgtaagtaaaactggtggactcaaaagctcagtagttaatggtgacggctc #### Gm815_ID5779_3 --> 2 - 0 Original Alignment gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccgtcacctcctacttttttttgggttttgtttttttaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc Alignment from CESAR gtGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccgtcacctcctacttttttttgggttttgtttttttaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc Alignment from Spaln_aa2Genome GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccgtcacctcctacttttttttgggttttgtttttttagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc Alignment from Spaln_nt2Genome GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccgtcacctcctacttttttttgggttttgtttttttagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc Alignment from Pairagon GTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccgtcacctcctacttttttttgggttttgtttttttagGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc Alignment from Exonerate_protein2genome CACTTCCTTCTCTACGTTTAGAACTGCTTCCCATACTTTTTTCCCCCACTGTGCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT ATCCTGATACTCCGTCACCTCCTACTTTTTTTTGGGTTTTGTTTTTTTAGGTGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc Alignment from Exonerate_coding2genome GCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccgtcacctcctacttttttttgggttttgtttttttaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc Alignment from GeneWise GCCTCAAGAGAGGAAGGACAAAGTGATACCCACTGGGGTCCAGCCAGCCCATCATTCCTGCATATTGACCCCGGAGGCCGGTGCCAGTGGAATAGCAGT atcctgatactccgtcacctcctacttttttttgggttttgtttttttaggtGCCTCAAGAGAGGAAGGGCAAAGTGACACCCACTGGGGTCCAGCCTGCCCATCATTCCTGCATATTGACCCTGGAGGCCGGTGCCAGTGGAATAGCAGTgtaagtgttgtgtgtctgcttgggtccatgctcctaaatcgtgggaactc #### Gm8369_ID3207_3 --> 0 - 0 Original Alignment GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt Alignment from CESAR GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt Alignment from Spaln_aa2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt Alignment from Spaln_nt2Genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt Alignment from Pairagon GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt Alignment from Exonerate_protein2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt Alignment from Exonerate_coding2genome GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt Alignment from GeneWise GGTTTGGATGCTTTGAAGTTAGTTTTAAATATGCTAGAATTCTGCCTTGCTGTGTCCATCTCTGCATTTGGATGTAAAGCTTCCTGCTGTAACTCCAGAGAG ctttgtataaatggctcctttaattgctagtccttccgttccaattgcagGGTTCCGATGCACTGAAGTTAGTTTTAAACATACTAGAATTCTGCCTAGCTGTATCCATCTCTGCATTTGGATGCAAAGCTTCCTGCTGTAACTCTAGAGAGgtgagcagcagttcctgtagatgttgtttggttatgctggatccagcagt #### Gnaq_ID4023_3 --> 0 - 2 Original Alignment GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAAta agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAAtagtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct Alignment from CESAR GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAAta agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAAtagtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct Alignment from Spaln_aa2Genome GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAATA agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAATAgtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct Alignment from Spaln_nt2Genome GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAATA agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAATAgtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct Alignment from Pairagon GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAATA agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAATAgtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct Alignment from Exonerate_protein2genome GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAATA agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAATAgtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct Alignment from Exonerate_coding2genome GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAATA agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAATAgtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct Alignment from GeneWise GCTCATGCACAATTGGTTCGAGAGGTTGATGTGGAGAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCTTGTGGAATGATCCTGGAATCCAGGAGTGCTACGACAGACGACGGGAATATCAGTTATCTGACTCTACCAAATA agagcgattatggagtgccaataattgctctcgtttttggtatttcccagGCTCATGCAAAGTTGGTCCGAGATATTGATGTGGAAAAGGTGTCTGCTTTTGAGAATCCATATGTAGATGCAATAAAGAGCCTGTGGAATGATCCTGGAATCCAGGAGTGTTATGACAGACGACGGGAATATCAGTTGTCTGACTCTACTAAATAgtaccaatctgctgaccaggctttagacacaatgtttcacctcctggtct #### Golga7b_ID8451_4 --> 0 - 0 Original Alignment GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT aggggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag Alignment from CESAR GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT agtggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag Alignment from Spaln_aa2Genome GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT aggggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag Alignment from Spaln_nt2Genome GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT aggggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag Alignment from Pairagon GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT aggggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag Alignment from Exonerate_protein2genome GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT aggggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag Alignment from Exonerate_coding2genome GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT aggggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag Alignment from GeneWise GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT aggggatagcccatcttttccttctccggaccgttgcttcctcaccgcagGTTCTAAAGAAGGTTTTACGCTACATCCAAGAGCAAAATGAGAAGGTTTTTGCTCCACGAGGGCTGCTGTTGACCGATCCAGTGGAACGTGGAATGAGGGTTgtatgttactgtgtttccctaagcatagtgcagaattgtgatggacaaag #### Got1_ID8748_7 --> 2 - 2 Original Alignment atGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGtg gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagatGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAAtggtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat Alignment from CESAR atGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGtg gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagatGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAAtggtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat Alignment from Spaln_aa2Genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagATGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAATGgtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat Alignment from Spaln_nt2Genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagATGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAATGgtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat Alignment from Pairagon ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagATGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAATGgtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat Alignment from Exonerate_protein2genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagATGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAATGgtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat Alignment from Exonerate_coding2genome ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagATGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAATGgtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat Alignment from GeneWise ATGAGAGAGTGGGGAATCTGACCGTGGTCGGAAAAGAGTCTGACAGCGTCCTGCGGGTCCTTTCCCAGATGGAGAAGATTGTACGAATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTGGCCGCCACCCTCTCTGACCCGGAGCTCTTTAAGGAGTG gaaccctgctgcaattcatgaacctgtttcaggttctggctctcttgcagATGAAAGAGTTGGAAATCTAACTGTGGTGGGAAAAGAGTCTGACAGTGTATTGCGGGTTCTTTCCCAGATGGAGAAGGTTGTACGCATCACCTGGTCCAATCCCCCAGCCCAAGGAGCTCGGATTGTTGCTGCTACCCTCTCTGATCCTGAGTTGTTTAAGGAATGgtaagtgcctctaatctcaagacaacatccagaaaacctgattgtcccat #### Got1_ID8749_6 --> 0 - 1 Original Alignment CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTCTATagtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg Alignment from CESAR CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACa ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTCTATagtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg Alignment from Spaln_aa2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTCTGG------TCCTTTACCAGGAACTCTGGGCTCTATAgtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg Alignment from Spaln_nt2Genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTCTG------GTCCTTTACCAGGAACTCTGGGCTCTATAgtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg Alignment from Pairagon CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTCTG------GTCCTTTACCAGGAACTCTGGGCTCTATAgtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg Alignment from Exonerate_protein2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTCTATAgtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg Alignment from Exonerate_coding2genome CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTCTATAgtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg Alignment from GeneWise CGCCGTTTTCTGTTCCCCTTCTTTGACTCAGCCTATCAGGGCTTTGCATCTGGAGACCTAGAGAAAGATGCGTGGGCTATTCGCTATTTTGTGTCTGAAGGCTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAAGAACTTCGGGCTCTACA ttggaaagccctgtcacatctggactgcaagttgtccaattttgtgctagTGCCGTTTTTTGTTCCCATACTTTGACTCAGCCTACCAGGGTTTTGCTTCTGCAGACTTGGAGAAAGATGCATGGGCAGTTCACTTTTTTGAATCTGAAGGCTTCCAACTTTTC------TGGTCCTTTACCAGGAACTCTGGGCTCTATAgtatgaactatggagaatgtcaatattgtaccttccctggaaccctgctg #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata #### Got1_ID8753_2 --> 2 - 0 Original Alignment cgTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagcaTACCGAACAGATGAATCTCATCCCTGT---TTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc Alignment from CESAR cgTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagcaTACCGAACAGATGAATCTCATCCCTGT---TTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc Alignment from Spaln_aa2Genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagCATACCGAACAGATGAATCTCATCCCTGT---TTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc Alignment from Spaln_nt2Genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagCATACCGAACAGATGAATCTCATCCCTG---TTTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc Alignment from Pairagon CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagCATACCGAACAGATGAATCTCATCCCTG---TTTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc Alignment from Exonerate_protein2genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagCATACCGAACAGATGAATCTCATCCC---TGTTTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc Alignment from Exonerate_coding2genome CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagCATACCGAACAGATGAATCTCATCCC---TGTTTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc Alignment from GeneWise CGTACCGCACAGATGAATCTCAGCCCTGGGTTTTGCCAGTAGTGAGGAAGGTCGAACAGAAGATTGCTAACGACAACAGCCTCAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGAGTTCCGGAGCTGTGCTTCTCGCCTAGTTCTTGGGGACAACAGCCTGGCTATCAGGGAGAATCGG gcttccttacaaatgaattgacagtatgtcacttatccatttcttgacagCATACCGAACAGATGAATCTCATCCC---TGTTTACCAGTCGTGAGGAAGCTTGAACAAAAGATTGCTAATGATAACAGTCTCAATCATGAATTCCTGCCTATCCTGGGCCCGGCTGAGTTCTGCAGTCGAGCCTCTCGACTGCTGCTTGGCGATAACAGCCTGGCTGTTAGAGAGAACTGGgtaagttagtattgtggcacaaggatactttatcatcagcggtcagatgc #### Gpam_ID11536_13 --> 2 - 0 Original Alignment ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagcaGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaagacttacaatcaattggttagagatatttcatgaatgccatagtga Alignment from CESAR ccGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagcaGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaagacttacaatcaattggttagagatatttcatgaatgccatagtga Alignment from Spaln_aa2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaagacttacaatcaattggttagagatatttcatgaatgccatagtga Alignment from Spaln_nt2Genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaagacttacaatcaattggttagagatatttcatgaatgccatagtga Alignment from Pairagon CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaagacttacaatcaattggttagagatatttcatgaatgccatagtga Alignment from Exonerate_protein2genome CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaagacttacaatcaattggttagagatatttcatgaatgccatagtga Alignment from Exonerate_coding2genome tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagcagccagcaagtctggggctatcatgtcaactcacatcgttgcctgtcttctcctatacaaacacaggcaggtaagacttacaatcaattggttagagatatttcatgaatgccatagtga Alignment from GeneWise CCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTGTCTGCTCCTCTACAGACACAGGCAG tagttgcactcaatctcgtcttgtatcaatttaaaacttttattctgaagCAGCCAGCAAGTCTGGGGCTATCATGTCAACTCACATCGTTGCCTGTCTTCTCCTATACAAACACAGGCAGgtaagacttacaatcaattggttagagatatttcatgaatgccatagtga #### Gpam_ID11541_8 --> 1 - 0 Original Alignment tACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagtACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat Alignment from CESAR tACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagtACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat Alignment from Spaln_aa2Genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagTACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat Alignment from Spaln_nt2Genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagTACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGA---CCCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat Alignment from Pairagon TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagTACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGA---CCCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat Alignment from Exonerate_protein2genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagTACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat Alignment from Exonerate_coding2genome TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagTACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat Alignment from GeneWise TACCTTGATTCACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGG acaaccctaccaccttcccttatgcgtttgaacatgactctcctcttcagTACTCTGATTCACAAGCTTGGAGGACTTTTTATAAGACGGAGGCTGGATGAC---CCAGATGGACGCAAAGACATTCTGTACAGAGCATTGCTCCATGGGgtgagatttgccacaaactgttctcaccaaagcacgctcataggctagat #### Gpam_ID11542_7 --> 0 - 2 Original Alignment ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCag ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCaggtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata Alignment from CESAR ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCag ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCaggtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata Alignment from Spaln_aa2Genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata Alignment from Spaln_nt2Genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata Alignment from Pairagon ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata Alignment from Exonerate_protein2genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata Alignment from Exonerate_coding2genome ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata Alignment from GeneWise ACGAACCTGCCGCTCTTGTTTCTGCCGGTGCACAGATCCCACATTGACTACCTGTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACATCCCCGTCTTCAG ttctgtgcttgcccctattacactctacttcctcttctgtcactgcccagATAAACTTGCCGCTCTTATTTCTGCTAGTGCACAGATCCCACATGGACTACCTCTTGCTTACTTTCATTCTTTTTTGTCACAACATCAAGGCACCATACATTGCCTCGGGCAATAATCTCAACATCCCTATCTTCAGgtaatgttatcccccttgcggagaacatagtaacgctaggttcagacata #### Gpam_ID11545_4 --> 1 - 2 Original Alignment gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagaCACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCaggtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact Alignment from CESAR gCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCag acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagaCACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCaggtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact Alignment from Spaln_aa2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact Alignment from Spaln_nt2Genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact Alignment from Pairagon GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact Alignment from Exonerate_protein2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact Alignment from Exonerate_coding2genome GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact Alignment from GeneWise GCACAGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAG acattactgacatggtgtgaatcaccatcatgagcctgcccctcctacagACACAGAGGATGGTTGGCAAGACGGCTTTCTTATATACTGTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCAACCAGTGTTACTGAGAATGTACTTAGTAGCAGCAGgtgagtgtggtgctactgttgacaaagcaagtagtaaaaaagcaatgact #### Gpam_ID11546_3 --> 0 - 2 Original Alignment GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAag cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGcggtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg Alignment from CESAR GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAag cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGcggtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg Alignment from Spaln_aa2Genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGCGgtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg Alignment from Spaln_nt2Genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGCGgtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg Alignment from Pairagon GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGCGgtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg Alignment from Exonerate_protein2genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGCGgtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg Alignment from Exonerate_coding2genome GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGCGgtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg Alignment from GeneWise GAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACAAG cttctcctacttaccagctgtgctggtgccccaatcctgcccgtttgcagGAAAGATTCTTCAACCCAAGTATTCCATCCCTAGGTTTGCAAAATGTTATTTATATTAATGAAACACAGACGCGgtaagtatgctgatgttaggttgcacattggttagatgcaatagaaaatg #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCAGCAATGAGCCGAGGGctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from CESAR GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCAGCAATGAGCCGAGGGctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Pairagon GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Exonerate_coding2genome aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcaggtggtatttaaggccaaagctaagcgtcgaccagcaatgagccgagggctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from GeneWise GTGGTGTTCAAGGCCAAGGCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa #### Grk5_ID13411_6 --> 1 - 2 Original Alignment gTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAag atactatatgggggtaaaaacacacttatcctctgctgctctgtccctaggTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGaagtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca Alignment from CESAR gTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAag atactatatgggggtaaaaacacacttatcctctgctgctctgtccctaggTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGaagtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca Alignment from Spaln_aa2Genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG atactatatgggggtaaaaacacacttatcctctgctgctctgtccctagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGAAgtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca Alignment from Spaln_nt2Genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG atactatatgggggtaaaaacacacttatcctctgctgctctgtccctagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGAAgtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca Alignment from Pairagon GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG atactatatgggggtaaaaacacacttatcctctgctgctctgtccctagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGAAgtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca Alignment from Exonerate_protein2genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG atactatatgggggtaaaaacacacttatcctctgctgctctgtccctagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGAAgtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca Alignment from Exonerate_coding2genome GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG atactatatgggggtaaaaacacacttatcctctgctgctctgtccctagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGAAgtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca Alignment from GeneWise GTCTGTCCATGACTACTTGAAGGGAGACCCCTTCCACGAGTACCTGGATAGCATGTATTTTGACCGTTTTCTGCAGTGGAAATGGTTAGAAAG atactatatgggggtaaaaacacacttatcctctgctgctctgtccctagGTCTGTGCATGACTACTTGAAGGGGGATCCCTTCCATGAGTACCTGGATAGTATGTATTTTGACCGTTTTCTTCAGTGGAAATGGCTGGAGAAgtgagtgccctgtggagctcatggttgcaatcctatagccatgaagttca #### Grk5_ID13420_13 --> 0 - 0 Original Alignment CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt Alignment from CESAR CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt Alignment from Spaln_aa2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGGAAC------TTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt Alignment from Spaln_nt2Genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGGAAC------TTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt Alignment from Pairagon CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAG------GAACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt Alignment from Exonerate_protein2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt Alignment from Exonerate_coding2genome CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGG------AACTTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt Alignment from GeneWise CTGCTCACCAAAGACTCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCCGCCGAGGTCAAGAGGCACCCTTTCTTCAGGAACATGAACTTTAAGCGCCTGGAGGCTGGGATGTTGGACCCTCCCTTCGTTCCAGAT taaccttgttgtttcttttgttcatctgtgccaacctcctttctccgcagGTGCTTACGGAAGACTCAGAGCAGCGGCTAGGCTGCCAGGAGGAGGGCGCTGCTGAGGTCAAGCGGCACCCTTTCTTCAGGAAC------TTCAAGCACTTGGAGGCTGGGATGCTGGACCCTCCCTTCGTTCAAGATgtaatcgaggtccttgatggtggccaaaatagtgcctcaaatacattagt #### Grk5_ID13421_14 --> 0 - 0 Original Alignment CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGAT------GATTTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAAG---GACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag Alignment from CESAR CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAAG---GACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag Alignment from Spaln_aa2Genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAAG---GACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag Alignment from Spaln_nt2Genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAA---GGACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag Alignment from Pairagon CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAA---GGACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag Alignment from Exonerate_protein2genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAAG---GACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag Alignment from Exonerate_coding2genome CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAAG---GACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag Alignment from GeneWise CCCCGGGCTGTATACTGCAAGGATGTGCTGGACATTGAGCAGTTCTCCACTGTGAAAGGTGTCAACCTGGACCATACGGACGATGAT------TTTTACTCAAAGTTCTCTACAGGCTCTGTGCCAATTCCATGGCAAAATGAG acatgcccaaatcagcaaggttggtggtccccctcctctttcttcggcagCCCTGGGCTGTGTATTGCACAGATGTGCTGGACATTGGGCAGTTCTCCACCGTGAAAGGTGTCAAG---GACCATACTGATGATGATGATGGCTTCTACTCAAAATACTCAACAGGTTCTGTGCCAAGTCCATGGCAAAATGAAgtgggtgaggcaaaacagggcagaatcagctttacccctatgtatttcag #### Gsto1_ID10376_4 --> 0 - 0 Original Alignment GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG acaaggcattcagatcacactggtgatcccccaagaaccctgtctcctagGTGCCACCCTTAATTGCAAGCTTCGTTAGATCCAAG---AAGGAGGATTCTCCCAACCTAAAGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaagaacctcatttgagacccgtatctcttctgaatttgatgcccgatg Alignment from CESAR GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG acaaggcattcagatcacactggtgatcccccaagaaccctgtctcctagGTGCCACCCTTAATTGCAAGCTTCGTTAGATCCAAG---AAGGAGGATTCTCCCAACCTAAAGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaagaacctcatttgagacccgtatctcttctgaatttgatgcccgatg Alignment from Spaln_aa2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG acaaggcattcagatcacactggtgatcccccaagaaccctgtctcctagGTGCCACCCTTAATTGCAAGCTTCGTTAGATCC---AAGAAGGAGGATTCTCCCAACCTAAAGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaagaacctcatttgagacccgtatctcttctgaatttgatgcccgatg Alignment from Spaln_nt2Genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG acaaggcattcagatcacactggtgatcccccaagaaccctgtctcctagGTGCCACCCTTAATTGCAAGCTTCGTTAGATCCAAG---AAGGAGGATTCTCCCAACCTAAAGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaagaacctcatttgagacccgtatctcttctgaatttgatgcccgatg Alignment from Pairagon GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG acaaggcattcagatcacactggtgatcccccaagaaccctgtctcctagGTGCCACCCTTAATTGCAAGCTTCGTTAGATCCAAG---AAGGAGGATTCTCCCAACCTAAAGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaagaacctcatttgagacccgtatctcttctgaatttgatgcccgatg Alignment from Exonerate_protein2genome GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG acaaggcattcagatcacactggtgatcccccaagaaccctgtctcctagGTGCCACCCTTAATTGCAAGCTTCGTTAGATCCAAG---AAGGAGGATTCTCCCAACCTAAAGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaagaacctcatttgagacccgtatctcttctgaatttgatgcccgatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCGAACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAG acaaggcattcagatcacactggtgatcccccaagaaccctgtctcctagGTGCCACCCTTAATTGCAAGCTTCGTTAGATCCAAG---AAGGAGGATTCTCCCAACCTAAAGGAAGCACTGGAGAATGAGTTTAAGAAGTTAGAGGAGgtaagaacctcatttgagacccgtatctcttctgaatttgatgcccgatg #### Gsto2_ID10387_4 --> 0 - 0 Original Alignment GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg Alignment from CESAR GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg Alignment from Spaln_aa2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg Alignment from Spaln_nt2Genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg Alignment from Pairagon GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg Alignment from Exonerate_protein2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg Alignment from Exonerate_coding2genome GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg Alignment from GeneWise GTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGTACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAG tagatcacaaagaagtcctgtgaccaacttgctaattatatgtttaacagGTCCCACCACTGAGCAAGGAATGCCTGATTGCACTGAGATGTGGAAGAGACTGCACAGATCTAAAGGTTGTCCTGCGGCAGGAGTTGTGCAACATGGAAGAGgtgagtaggatctgcttcattaaggattgttggccattaaagtaccacgg #### Gucy2g_ID11571_20 --> 2 - 0 Original Alignment ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGA---GGCACCATTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagctCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag Alignment from CESAR ctCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagctCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag Alignment from Spaln_aa2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagCTCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag Alignment from Spaln_nt2Genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCA---TTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagCTCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag Alignment from Pairagon CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGCACCA---TTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagCTCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag Alignment from Exonerate_protein2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagCTCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag Alignment from Exonerate_coding2genome CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagCTCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag Alignment from GeneWise CTCTCCGGATTCACGTTTCCCAGAGCACCGCAGGAGCTCTTCTAGCAGCAGGGGGGTACCATCTGCAAAAGAGAGGC---ACCATTTCAGTCAAG atccattgtcttgcaaatggtgaatgtacttgtgctttcatgctgtttagCTCTCCGGATTCATATTTCACACAGCACTCCTGGTGCTCTTTTAGCAGCAGGGGGGTACCCTCTGCAAGAGAGAGGCAGCACTGTTTCTGTAAAGgtgatgctgggcctttcttgtgcttggcattgatgacgcctaaattgcag #### Gucy2g_ID11581_10 --> 0 - 0 Original Alignment GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa Alignment from CESAR GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa Alignment from Spaln_aa2Genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa Alignment from Spaln_nt2Genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa Alignment from Pairagon GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa Alignment from Exonerate_protein2genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa Alignment from Exonerate_coding2genome GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa Alignment from GeneWise GGAAATCAGGTGGCCCTCTGCTATATTGGTGACGAAGCAGAAGCTTGGGTTAAGAAGCCAACTGTGCGGCGGGAAGTCTGCCTG atccatatattggacattctgaagggtccactctgttttcttatgcatagGGAAATCAGGTTGCTCTCTGCTATATTGGTGATGAGGCAGAAGCTTGGGTTAAGAAGCCAACGGTTCGTCAAGAAGTCTGCTTGgtatgcagctgttccggtgtttctacatctatggaccgccttctctgaaa #### Gucy2g_ID11582_9 --> 0 - 0 Original Alignment CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc Alignment from CESAR CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc Alignment from Spaln_aa2Genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc Alignment from Spaln_nt2Genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc Alignment from Pairagon CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc Alignment from Exonerate_protein2genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc Alignment from Exonerate_coding2genome CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc Alignment from GeneWise CTGTCCCACCGAGGCACACCTGTGTCAAGACGTAATGTTAGCGATACATCTACTGTGAAGGCTTCTGCAGATTGTGGCTCCTTGGTCAAGAGGCACCAGGATGAAGAGCTGTTCTTTGCCCCCGTGGGGCTTTACCAG ttacaggtatgaagtgctctactaggtaaagcacaatatctttttcttagCTGTCTCACCGAGGCACACCCGTATCAAGACGTAATGTCAGTGACACACCCACTGTGAAGGCTTCTGCAGATTGTGAATCCCTGGTCAAGAGGCACCAGGATGAAGAACTGTTCTTTGCCCCTGTGGAATTTTATCAAgtatgtgtattactatcatcactaaacaggctgggacttgactggacttc #### Gucy2g_ID11585_6 --> 2 - 2 Original Alignment gaATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCag cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcaggaATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCaggtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt Alignment from CESAR gaATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCag cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcaggaATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCaggtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt Alignment from Spaln_aa2Genome GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcagGAATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCAGgtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt Alignment from Spaln_nt2Genome GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcagGAATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCAGgtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt Alignment from Pairagon GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcagGAATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCAGgtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt Alignment from Exonerate_protein2genome GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcagGAATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCAGgtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt Alignment from Exonerate_coding2genome GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcagGAATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCAGgtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt Alignment from GeneWise GAATCACCGGTCCTGTGCTTTTGGACTCCCAGGGGAAAAGGCACGTGGATTACTCCGTCTATGCTCTGCAGGAATCTGGAAACAGGTCCCTCTTCCTTCCCTTTCTTCATTATGACAGTTTTCAGAAAGTAATCAG cagttaagcaagtctcaaatgcagtcatcagtttttgtttcttcatgcagGAATCACTGGTCTTGTGCTTCTAGATTGCCAAGGCAAGAGGCATGTGGATTACTCCATCTACACTCTGCAGGAATCTGGCAACAGGTCCCTTTACCTGCCCTTTCTTCACTACGACAGTTTTCAGAAAGTAATCAGgtacgttcaatcaattttctaaatcccaccatgaccctgaaataggctgt #### Habp2_ID12063_9 --> 1 - 1 Original Alignment cATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTg tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagtATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTggtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg Alignment from CESAR cATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTg tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagtATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTggtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg Alignment from Spaln_aa2Genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagTATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTGgtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg Alignment from Spaln_nt2Genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagTATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTGgtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg Alignment from Pairagon CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagTATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTGgtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg Alignment from Exonerate_protein2genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagTATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTGgtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg Alignment from Exonerate_coding2genome CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagTATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTGgtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg Alignment from GeneWise CATAAACACCAAGCATCTAAAAGTTGTACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAACAGACCTTCAGGGTGGAAAAAATACTGAAGTACAGTCAGTATAATGAAAGAGATGAGATTCCCCACAATGACATTG tttgtactgtgctgccatggctattcggcacgtgctacatcttttattagTATAAACACCAAACACTTAAAAGTTGCACTAGGGGATCAGGACCTGAAGAAGACAGAATCCCATGAGCAGACCTTGAGGGTGGAAAAAATACTGAAATATAGTCAGCATAATGAAAGAGATGAGATCCCTCACAATGACATTGgtaggagtcccatcccccctggctctcttgccttttggaaaagagctttg #### Hectd2_ID7145_3 --> 2 - 2 Original Alignment tgAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTga caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagtgAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTgagtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc Alignment from CESAR tgAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTga caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagtgAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTgagtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc Alignment from Spaln_aa2Genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagTGAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc Alignment from Spaln_nt2Genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagTGAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc Alignment from Pairagon TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagTGAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc Alignment from Exonerate_protein2genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagTGAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc Alignment from Exonerate_coding2genome TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagTGAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc Alignment from GeneWise TGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTACCATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGA caatggtaaacactgaataatatgcttaacttgttcctttccttgaacagTGAGAGACCTACCACCAATTTGTCTTGATGTTAGGCAAAAACACTGCATGTCTGTGGAGGCACTACCATCTGAAGTGAAAATCCCTCCACTTCCAGAGCCCTCCCTTCCTAGCCAGCCTGAAACTGTAAAAGACTTTGAgtgaggcttgcatagactaactgtcttttggatgtcagggctataaatcc #### Hectd2_ID7146_4 --> 1 - 0 Original Alignment gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacaggGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from CESAR gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacaggGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Spaln_aa2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Spaln_nt2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Pairagon GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Exonerate_protein2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Exonerate_coding2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from GeneWise GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa #### Hectd2_ID7154_12 --> 0 - 0 Original Alignment CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa Alignment from CESAR CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa Alignment from Spaln_aa2Genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa Alignment from Spaln_nt2Genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa Alignment from Pairagon CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa Alignment from Exonerate_protein2genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa Alignment from Exonerate_coding2genome CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa Alignment from GeneWise CAAAGTCTGGTGGATAAAGTATCTCGAAGACAAAGACCTGATATGAATATGTTATTTCTAAATATGAAAGTAAGGAGGACACATCTGGTTAGCGACTCACTTGATGAG aatgttttcagtttaaaatacttctggttaccatgcatccctctgtttagCAAAGTCTGGTGGATAAAGTATCTAGAAGACAAAGACCTGATATGAATATGTTATATTTAAACATGAAAGTAAGGAGGACACATCTGGTTAGTGACTCTCTTGATGAGgtgagttctattccaaaatagttagtccaaaatggggctttcttacctaa #### Hectd2_ID7155_13 --> 0 - 1 Original Alignment TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATg ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATggtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta Alignment from CESAR TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATg ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATggtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta Alignment from Spaln_aa2Genome TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATG ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATGgtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta Alignment from Spaln_nt2Genome TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATG ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATGgtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta Alignment from Pairagon TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATG ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATGgtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta Alignment from Exonerate_protein2genome TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATG ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATGgtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta Alignment from Exonerate_coding2genome TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATG ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATGgtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta Alignment from GeneWise TTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCGGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATG ccattgatgatgaagtctttcagcgacactgcctttgctcatgttctcagTTAACCCGGAAGAGAGCTGACTTGAAGAAGAAGTTGAAAGTTACATTTGTAGGTGAAGCTGGTTTGGATATGGGCAGCTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAGATTTTCCATCCAGATTATGgtaggctctgtctacaattcctcacgatctgggggtttgtgcctttggta #### Hells_ID7708_15 --> 0 - 0 Original Alignment ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from CESAR ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Spaln_aa2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Spaln_nt2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Pairagon ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Exonerate_protein2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Exonerate_coding2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from GeneWise ATTGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAGGTT----------------------------------------------- tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGGTGAGTATGGCTAGAATTTGTGCTCTTCAGCTTCATATGGGTCAGTGTAG #### Hells_ID7709_16 --> 0 - 0 Original Alignment GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctcttcagcttcatatgggtcagtgtagttctgttgcgctttgtccacagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca Alignment from CESAR GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctcttcagcttcatatgggtcagtgtagttctgttgcgctttgtccacagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca Alignment from Spaln_aa2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctcttcagcttcatatgggtcagtgtagttctgttgcgctttgtccacagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca Alignment from Spaln_nt2Genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctcttcagcttcatatgggtcagtgtagttctgttgcgctttgtccacagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca Alignment from Pairagon ---------------------------------------------------TTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT CTCTTCAGCTTCATATGGGTCAGTGTAGTTCTGTTGCGCTTTGTCCACAGTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca Alignment from Exonerate_protein2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctcttcagcttcatatgggtcagtgtagttctgttgcgctttgtccacagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca Alignment from Exonerate_coding2genome GTTCTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT ctcttcagcttcatatgggtcagtgtagttctgttgcgctttgtccacagTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca Alignment from GeneWise -----------------------------------------------------CTGGTGTTTTCACAAATGACAAGCATGTTGGACATCTTGATGGATTATTGCCATCTTAGAAACTTCATCTTTAGCAGACTTGATGGGTCCATGTCTTATTCGGAAAGAGAAAAAAAT CTCTTCAGCTTCATATGGGTCAGTGTAGTTCTGTTGCGCTTTGTCCACAGTTTCTAGTGTTCTCACAAATGACAAGCATGTTGGACATCCTGATGGATTATTGTCACCTTAGAAACTTCATCTTTAGCAGACTAGATGGGTCAATGACTTATTCAGAAAGGGAAAAGAATgtaattatgacttgacaaatgttactgtatgcagctttcctccactgtca #### Hells_ID7711_18 --> 0 - 1 Original Alignment AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAa acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAagtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct Alignment from CESAR AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAa acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAagtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct Alignment from Spaln_aa2Genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct Alignment from Spaln_nt2Genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct Alignment from Pairagon AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct Alignment from Exonerate_protein2genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct Alignment from Exonerate_coding2genome AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct Alignment from GeneWise AATCCTCAGTCTGATCTCCAGGCTCAAGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTGTATCGTCTTGTAACAGCAAATACTATTGACCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAA acttttttaacataacaatactattagtttgcctttgttcttttatcaagAATCCTCAGTCTGATCTCCAGGCTCAAGATAAATGTCATAGAATCGGTCAAACAAAGCCAGTTGCTGTGTATCGTCTTGTAACAGCAAACACTATTGAGCAGAAAATTGTGGAAAGGGCAGCTGCTAAAAGAAAGTTGGAGAAGTTGATAATCCATAAAAgtaaggaaggcctgatttgaccttatttgtatggtgatcaccaggagtct #### Hells_ID7712_19 --> 2 - 2 Original Alignment atCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAag gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagatCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAaggtaggccagaagtatcataacacttataatggatgtgaggatttctgcca Alignment from CESAR atCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAag gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagatCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAaggtaggccagaagtatcataacacttataatggatgtgaggatttctgcca Alignment from Spaln_aa2Genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagATCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAAGgtaggccagaagtatcataacacttataatggatgtgaggatttctgcca Alignment from Spaln_nt2Genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagATCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAAGgtaggccagaagtatcataacacttataatggatgtgaggatttctgcca Alignment from Pairagon ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagATCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAAGgtaggccagaagtatcataacacttataatggatgtgaggatttctgcca Alignment from Exonerate_protein2genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagATCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAAGgtaggccagaagtatcataacacttataatggatgtgaggatttctgcca Alignment from Exonerate_coding2genome ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagATCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAAGgtaggccagaagtatcataacacttataatggatgtgaggatttctgcca Alignment from GeneWise ATCATTTCAAAGGTGGTCAGTCTGGGTTAAGTCAATCTAAGAATTTCTTAGATGCAAAGGAATTAATGGAGTTATTAAAATCTAGAGATTATGAAAG gggagttaaacttttaagaaatctgatctaattcattgtctaatttaaagATCATTTCAAGAGTGGAAAATCAGGACTGGGTCACTCTGAGAATTTCTTGGATGCAAGGGAATTAACAGAGTTATTAAAATCTAGAGATTATGAAAGgtaggccagaagtatcataacacttataatggatgtgaggatttctgcca #### Hif1an_ID9068_6 --> 1 - 0 Original Alignment gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccaggTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc Alignment from CESAR gTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccaggTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc Alignment from Spaln_aa2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccagGTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc Alignment from Spaln_nt2Genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccagGTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc Alignment from Pairagon GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccagGTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc Alignment from Exonerate_protein2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccagGTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc Alignment from Exonerate_coding2genome GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccagGTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc Alignment from GeneWise GTGGCACCATATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG ccaactattttacattatccccttaatacaggttgctctcgtctcaccagGTGGCACCATATAGAGTCATTACTGAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtaggtaattagttagtcattgcttatttttgtctccaatgatggatgtc #### Hnrnpul2_ID2397_2 --> 2 - 2 Original Alignment gaGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCcg cagtatggaatttggtagttttctttcccagtttacatgttccatctcaggaGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCtggtgaggggaacacctcctggataggggtgtccaccccacttttcttacct Alignment from CESAR gaGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCcg cagtatggaatttggtagttttctttcccagtttacatgttccatctcaggaGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCtggtgaggggaacacctcctggataggggtgtccaccccacttttcttacct Alignment from Spaln_aa2Genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG cagtatggaatttggtagttttctttcccagtttacatgttccatctcagGAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCTGgtgaggggaacacctcctggataggggtgtccaccccacttttcttacct Alignment from Spaln_nt2Genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG cagtatggaatttggtagttttctttcccagtttacatgttccatctcagGAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCTGgtgaggggaacacctcctggataggggtgtccaccccacttttcttacct Alignment from Pairagon GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG cagtatggaatttggtagttttctttcccagtttacatgttccatctcagGAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCTGgtgaggggaacacctcctggataggggtgtccaccccacttttcttacct Alignment from Exonerate_protein2genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG cagtatggaatttggtagttttctttcccagtttacatgttccatctcagGAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCTGgtgaggggaacacctcctggataggggtgtccaccccacttttcttacct Alignment from Exonerate_coding2genome GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG cagtatggaatttggtagttttctttcccagtttacatgttccatctcagGAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCTGgtgaggggaacacctcctggataggggtgtccaccccacttttcttacct Alignment from GeneWise GAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGGCGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCCG cagtatggaatttggtagttttctttcccagtttacatgttccatctcagGAGATGACCAAGATAGTGAAAAGTCAAAACCAGCAGGCTCAGATGGTGAGCGACGGGGGGTAAAGAGACAGCGGGATGAGAAGGATGAACATGGCCGAGCTTACTATGAATTCCGAGAGGAGGCTTACCACAGCTGgtgaggggaacacctcctggataggggtgtccaccccacttttcttacct #### Hnrnpul2_ID2402_6 --> 2 - 0 Original Alignment gtGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacaggtGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac Alignment from CESAR gtGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacaggtGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac Alignment from Spaln_aa2Genome GTGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacagGTGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac Alignment from Spaln_nt2Genome GTGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacagGTGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac Alignment from Pairagon GTGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacagGTGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac Alignment from Exonerate_protein2genome GTGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacagGTGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac Alignment from Exonerate_coding2genome GTGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacagGTGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac Alignment from GeneWise GTGAAGACGAGTTCTCCTACGGTTTTGACGGAAGAGGACTCAAGGCAGAAAACGGGCAGTTTGAGGAATTTGGCCAGACTTTTGGGGAGAATGATGTTATTGGCTGTTTTGCT ggggttaggatacaaggtggataatttgaataacttctgtttctgaacagGTGAAGACAAGTTTTCCTATAGTGTGGAAGGGAGAGGGCTTAAGGCGGAAAATGGGCAGTTTGAAGAATTTGGCCAGACTTTTGGTGAAAATGATGTTATTGGATGTTTTGCTgtaagggttacggaagtcttggcagtttagcaaaactataaagatctaac #### Hnrnpul2_ID2406_10 --> 0 - 1 Original Alignment TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAg atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAggtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa Alignment from CESAR TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAg atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAggtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa Alignment from Spaln_aa2Genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa Alignment from Spaln_nt2Genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa Alignment from Pairagon TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa Alignment from Exonerate_protein2genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa Alignment from Exonerate_coding2genome TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa Alignment from GeneWise TGTAATGTGTACAACTCTGGCCAACGAAGGAAGTTACTGCTGTTCAAGACATTCTCCAGGAAGGTGGTGGTAGTTGTTCCTAATGAGGAAGATTGGAAGAGGAGGCTGGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAG atgcatgtatttttcaagatattctccaaacatacaatatttgttcacagTGTAATGTGTACAACTCAGGCCAACGAAGGAAGTTACTGCTGTTTAGGGCATTCTCCAGAAAGGTGGTGGTTGTTGTTCCTAATGAGGAAGATTGGAAGAGAAGGCTAGAGTTGAGGAAAGAAGTGGAGGGAGATGATGTGCCTGAGTCTATAATGCTGGAGATGAAAGgtgagttaaaggctagaaaaacccattctctgcttagtgtatgttactaa #### Hnrnpul2_ID2407_11 --> 2 - 1 Original Alignment ccAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATg ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagctAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATggtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt Alignment from CESAR ccAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATg ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagctAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATggtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt Alignment from Spaln_aa2Genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagCTAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATGgtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt Alignment from Spaln_nt2Genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagCTAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATGgtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt Alignment from Pairagon CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagCTAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATGgtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt Alignment from Exonerate_protein2genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagCTAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATGgtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt Alignment from Exonerate_coding2genome CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagCTAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATGgtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt Alignment from GeneWise CCAACTTCTCTCTGCCTGAGAAATGCGACTATATGGATGAGGTGACATATGGGGAGCTGGAAAAAGAGGAAGCTCAACCCATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTACTGCCCCCCTCTGAGAAGCGTACAAACCGCCGGAACAACCGCAACAAGAGAAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATG ccgcatctgtgcaccttcaaggcctgtgccctttgcgccccctccctcagCTAACTTCTCTCTGGCTGAGAAATGCGATTATATGGATGAGGTGACGTATGGCGAGCTGGAAAAAGAGGAAGCTCAACCTATTGTTACTAAATACAAGGAGGAAGCAAGGAAGCTGCTACCCCCCTCTGAGAAGCGTACAAACCGCAGGAATAACCGCAACAAGAGGAACCGGCAGAACCGAAGCCGAGGCCAAGGCTATGgtgagttctaaagactgtttacagatgaggggatcatggtgaagcttctt #### Hoga1_ID8379_2 --> 2 - 1 Original Alignment gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt gcacatttgcattcatcatagcaggtagactcacccgttattgcttttaggaTATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGtgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc Alignment from CESAR gcTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGt gcacatttgcattcatcatagcaggtagactcacccgttattgcttttaggaTATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGtgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc Alignment from Spaln_aa2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gcacatttgcattcatcatagcaggtagactcacccgttattgcttttagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGTgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc Alignment from Spaln_nt2Genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gcacatttgcattcatcatagcaggtagactcacccgttattgcttttagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGTgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc Alignment from Pairagon GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gcacatttgcattcatcatagcaggtagactcacccgttattgcttttagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGTgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc Alignment from Exonerate_protein2genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gcacatttgcattcatcatagcaggtagactcacccgttattgcttttagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGTgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc Alignment from Exonerate_coding2genome GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gcacatttgcattcatcatagcaggtagactcacccgttattgcttttagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGTgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc Alignment from GeneWise GCTTCGTGGTCCAGGGTTCGACTGGAGAGTTTCCGTTCCTGACCAGCCTCGAGCGCCTGGAGGTGGTGAGCCGCGTGCGCCAGGCCATACCCAAGGACAAGTTCCTGATAGCCGGCTCTGGCTGCGAGT gcacatttgcattcatcatagcaggtagactcacccgttattgcttttagGATATTTGGTCCAGGGTTCTACTGGAGAGTTCCTCTTCCTAACTAGCCTCGAGCGCCTAGATGTGGTAAGCCGTGTTCGTCAGGCGATACCTAAGGACAAGTCCCTGATAGCTGGTTCCAGCTGCAAGTgtgagtactggaaccgctgaacctgggggttcctactggctgtagggccc #### Hps1_ID8619_9 --> 2 - 0 Original Alignment gtAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcaggtAGCCTCATT---CTAGATGGGGGCACCCCACCTAGTGATGCCATTGAGgtgagttactcatacagtatcctctagctgttctgagggccattagccac Alignment from CESAR gtAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcaggtAGCCTCATT---CTAGATGGGGGCACCCCACCTAGTGATGCCATTGAGgtgagttactcatacagtatcctctagctgttctgagggccattagccac Alignment from Spaln_aa2Genome GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcagGTAGCCTCATT---CTAGATGGGGGCACCCCACCTAGTGATGCCATTGAGgtgagttactcatacagtatcctctagctgttctgagggccattagccac Alignment from Spaln_nt2Genome GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcagGTAGCCTCAT---TCTAGATGGGGGCACCCCACCTAGTGATGCCATTGAGgtgagttactcatacagtatcctctagctgttctgagggccattagccac Alignment from Pairagon GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcagGTAGCCTCATT---CTAGATGGGGGCACCCCACCTAGTGATGCCATTGAGgtgagttactcatacagtatcctctagctgttctgagggccattagccac Alignment from Exonerate_protein2genome CGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcaggtagCCTCATTCTAGATGGGGGCACCCCACCTAGTGATGCCATTGAGgtgagttactcatacagtatcctctagctgttctgagggccattagccac Alignment from Exonerate_coding2genome ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcaggtagcctcattctagatgggggcaccccacctagtgatgccattgaggtgagttactcatacagtatcctctagctgttctgagggccattagccac Alignment from GeneWise GTAGCCTCGTCTGGCTGGATGGTGGCACCCCGCCCAGCGATGCTCTTCAG ttagcatacctcccgctgagcccatagaatgctgtttgtcttatcttcagGTAGCCTCATT---CTAGATGGGGGCACCCCACCTAGTGATGCCATTGAGgtgagttactcatacagtatcctctagctgttctgagggccattagccac #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCCACCAGGAGTTCCAGGGAGACA ttgtgccatgctattatgctcctcattataccctcctctttgtcttgaagAGGCGACCTAAGAGCAGCCAAAACATACCAGTGCCACAGGCCAGGAGCCAGAGTACCTCAGTACCTGCCAGGGGTTGTAGGGAGACAgtaagtgctaggccgttaacagaatagggtgtcactgtctgctttctctt #### Hps1_ID8624_4 --> 1 - 0 Original Alignment gCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG tctgacataacaaaataactttaaatgtagtatgttttttactctttcaggCTTTGTCCCCCTGACCTTGAAGAGCGTGGCCGAGTGTGGAAACACTTCCAGAGACTGCTGGGAACCCACAGT---------GACAGGGAGCAGAGCTTTGCTGTGGAGgtatgttgggctgatgggcatacagaaccaaggaagtcccatcagaatta Alignment from CESAR gCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG tctgacataacaaaataactttaaatgtagtatgttttttactctttcaggCTTTGTCCCCCTGACCTTGAAGAGCGTGGCCGAGTGTGGAAACACTTCCAGAGACTGCTGGGAACCCACAGT---------GACAGGGAGCAGAGCTTTGCTGTGGAGgtatgttgggctgatgggcatacagaaccaaggaagtcccatcagaatta Alignment from Spaln_aa2Genome GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG tctgacataacaaaataactttaaatgtagtatgttttttactctttcagGCTTTGTCCCCCTGACCTTGAAGAGCGTGGCCGAGTGTGGAAACACTTCCAGAGACTGCTGGGAACCCACAGT---------GACAGGGAGCAGAGCTTTGCTGTGGAGgtatgttgggctgatgggcatacagaaccaaggaagtcccatcagaatta Alignment from Spaln_nt2Genome GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG tctgacataacaaaataactttaaatgtagtatgttttttactctttcagGCTTTGTCCCCCTGACCTTGAAGAGCGTGGCCGAGTGTGGAAACACTTCCAGAGACTGCTGGGAACCCACA---------GTGACAGGGAGCAGAGCTTTGCTGTGGAGgtatgttgggctgatgggcatacagaaccaaggaagtcccatcagaatta Alignment from Pairagon GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG tctgacataacaaaataactttaaatgtagtatgttttttactctttcagGCTTTGTCCCCCTGACCTTGAAGAGCGTGGCCGAGTGTGGAAACACTTCCAGAGACTGCTGGGAACCCACAGT---------GACAGGGAGCAGAGCTTTGCTGTGGAGgtatgttgggctgatgggcatacagaaccaaggaagtcccatcagaatta Alignment from Exonerate_protein2genome GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG tctgacataacaaaataactttaaatgtagtatgttttttactctttcagGCTTTGTCCCCCTGACCTTGAAGAGCGTGGCCGAGTGTGGAAACACTTCCAGAGACTGCTGGGAACCCACAGT---------GACAGGGAGCAGAGCTTTGCTGTGGAGgtatgttgggctgatgggcatacagaaccaaggaagtcccatcagaatta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTTCGTCCACCCGACCTGGAAGAGCGTGCCCGGGTGTGGAAGCACTTTCAGAGACTGCTGGGGACCTACAGCTACCTGCGGGACCGGGAGCAGAGCTTTGCTGTGGAG tctgacataacaaaataactttaaatgtagtatgttttttactctttcagGCTTTGTCCCCCTGACCTTGAAGAGCGTGGCCGAGTGTGGAAACACTTCCAGAGACTGCTGGGAACCCACAGT---------GACAGGGAGCAGAGCTTTGCTGTGGAGgtatgttgggctgatgggcatacagaaccaaggaagtcccatcagaatta #### Hps1_ID8626_2 --> 0 - 0 Original Alignment CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgcaaggtcctctttttgtccccagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCGTGGCCCTAGTCATCATCTCCTCCATGACAATGATGGAAAGGCTGTTGGACACATATACTTGCTTCTCAACAGAAAATGACAACCACTTGTATGTTCTGCATCTAgtaacttttttagtcaagagtggagaatgatctgcctccccgcctataat Alignment from CESAR CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgcaaggtcctctttttgtccccagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCGTGGCCCTAGTCATCATCTCCTCCATGACAATGATGGAAAGGCTGTTGGACACATATACTTGCTTCTCAACAGAAAATGACAACCACTTGTATGTTCTGCATCTAgtaacttttttagtcaagagtggagaatgatctgcctccccgcctataat Alignment from Spaln_aa2Genome CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgcaaggtcctctttttgtccccagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCGTGGCCCTAGTCATCATCTCCTCCATGACAATGATGGAAAGGCTGTTGGACACATATACTTGCTTCTCAACAGAAAATGACAACCACTTGTATGTTCTGCATCTAgtaacttttttagtcaagagtggagaatgatctgcctccccgcctataat Alignment from Spaln_nt2Genome CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgcaaggtcctctttttgtccccagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCGTGGCCCTAGTCATCATCTCCTCCATGACAATGATGGAAAGGCTGTTGGACACATATACTTGCTTCTCAACAGAAAATGACAACCACTTGTATGTTCTGCATCTAgtaacttttttagtcaagagtggagaatgatctgcctccccgcctataat Alignment from Pairagon CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgcaaggtcctctttttgtccccagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCGTGGCCCTAGTCATCATCTCCTCCATGACAATGATGGAAAGGCTGTTGGACACATATACTTGCTTCTCAACAGAAAATGACAACCACTTGTATGTTCTGCATCTAgtaacttttttagtcaagagtggagaatgatctgcctccccgcctataat Alignment from Exonerate_protein2genome CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgcaaggtcctctttttgtccccagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCGTGGCCCTAGTCATCATCTCCTCCATGACAATGATGGAAAGGCTGTTGGACACATATACTTGCTTCTCAACAGAAAATGACAACCACTTGTATGTTCTGCATCTAgtaacttttttagtcaagagtggagaatgatctgcctccccgcctataat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTCCCTGTGCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGATGGAGAAGCTCTCGGACACATATACCTGCTTCTCAACAGAAAATGACAACCACCTGTATGTCCTGCATCTG tcgggtatattactgtggggtgttatgcaaggtcctctttttgtccccagCTCCCTGTGCTAGAAGACCAGCTCACCACTCTCGTGGCCCTAGTCATCATCTCCTCCATGACAATGATGGAAAGGCTGTTGGACACATATACTTGCTTCTCAACAGAAAATGACAACCACTTGTATGTTCTGCATCTAgtaacttttttagtcaagagtggagaatgatctgcctccccgcctataat #### Hpse2_ID8671_9 --> 1 - 0 Original Alignment aTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagaTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa Alignment from CESAR aTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagaTGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa Alignment from Spaln_aa2Genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa Alignment from Spaln_nt2Genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa Alignment from Pairagon ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa Alignment from Exonerate_protein2genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa Alignment from Exonerate_coding2genome ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa Alignment from GeneWise ATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTCGTGATACGACATTCATTTTTCGACCACGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCA ttgtcagatagtcctaggaggtttataatgagctcctgcttcctttgtagATGGCTAAACACTTTAGGAATGTTGGCCAATCAGGGCATTGATGTTGTGATACGACATTCATTTTTCGACCATGGATACAACCATCTGGTGGACCAGAATTTTAACCCATTACCAgtatgtgctggtccagatttccagggactttgcaaaccattttattacaa #### Hpse2_ID8719_2 --> 1 - 1 Original Alignment cTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATg ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagcTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATggtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc Alignment from CESAR cTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATg ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagcTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATggtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc Alignment from Spaln_aa2Genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagCTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc Alignment from Spaln_nt2Genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagCTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc Alignment from Pairagon CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagCTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc Alignment from Exonerate_protein2genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagCTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc Alignment from Exonerate_coding2genome CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagCTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc Alignment from GeneWise CTCCAAGCGTCTGGTGACCTTGGCCCGGGGACTCTCGCCCGCCTTTCTGCGCTTCGGGGGCAAAAGGACGGATTTCCTGCAGTTCCAGAACCTGAGAAATCCGGCGAAAAGCCGCGGGGGCCCGGGCCCGGATTACTATCTCAAAAACTATGAGGATG ctgttgacttctcccaacatcctttcctatcattctgttgctgaatccagCTCCAAGTGCCTGGTTACCTTAGCCCGGGGACTCTCGCCTGCCTTTCTGCGCTTTGGGGGCAAAAGGATGGATTTCTTGCAGTTCCAGAACCTAAGAAATCCAGCAAAAAGCCGTGGGGGTCCAGGCCCAGATTATTATCTCAAAAACTATGAGGATGgtgaggaattttgtcctgacggcgtaatgccagggggagcagggctaagc #### Hrasls5_ID2196_2 --> 2 - 2 Original Alignment acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagacTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAgggtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc Alignment from CESAR acTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGgg ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagacTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAgggtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc Alignment from Spaln_aa2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc Alignment from Spaln_nt2Genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc Alignment from Pairagon ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc Alignment from Exonerate_protein2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc Alignment from Exonerate_coding2genome ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc Alignment from GeneWise ACTCAGCGAGTTCTCAAGCGCTGTTGGTCCAGTTCTTGCCGAAGCAACTCAAGCAAGACCGCCGATTAGAACAGGCCCGAAGCTTTCAGCAGGG ccccacacacacacatgctgactctctccaggtatgtgttttctcctcagACTCAGCAGGTTCTCAAGCATTGTTTGTTCAGTTCTTGCCGAATCAACTCAAGCAAGATCGTCAATTGGAACAGGCCCGTAGCTTCCAGCAAGGgtaaaagtctctgaagattttagtagagatgacagacttaccgagagggc #### Hspa12a_ID12806_9 --> 2 - 1 Original Alignment ggGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAg ccagcacgtcctcaatcatttaattattatccttctccattcctcaccagggGACAAATATGTGGTTGTTGACAGTGGGGGGGGCACAGTAGACCTAACTGTCCATCAGATACGGTTACCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAggtatgacatgccttcctttttccccccccctcctcattaatcattcatgt Alignment from CESAR ggGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAg ccagcacgtcctcaatcatttaattattatccttctccattcctcaccagggGACAAATATGTGGTTGTTGACAGTGGGGGGGGCACAGTAGACCTAACTGTCCATCAGATACGGTTACCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAggtatgacatgccttcctttttccccccccctcctcattaatcattcatgt Alignment from Spaln_aa2Genome GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacgtcctcaatcatttaattattatccttctccattcctcaccagGGGACAAATATGTGGTTGTTGACAGTGGGGGGGGCACAGTAGACCTAACTGTCCATCAGATACGGTTACCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtatgacatgccttcctttttccccccccctcctcattaatcattcatgt Alignment from Spaln_nt2Genome GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacgtcctcaatcatttaattattatccttctccattcctcaccagGGGACAAATATGTGGTTGTTGACAGTGGGGGGGGCACAGTAGACCTAACTGTCCATCAGATACGGTTACCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtatgacatgccttcctttttccccccccctcctcattaatcattcatgt Alignment from Pairagon GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacgtcctcaatcatttaattattatccttctccattcctcaccagGGGACAAATATGTGGTTGTTGACAGTGGGGGGGGCACAGTAGACCTAACTGTCCATCAGATACGGTTACCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtatgacatgccttcctttttccccccccctcctcattaatcattcatgt Alignment from Exonerate_protein2genome GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacgtcctcaatcatttaattattatccttctccattcctcaccagGGGACAAATATGTGGTTGTTGACAGTGGGGGGGGCACAGTAGACCTAACTGTCCATCAGATACGGTTACCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtatgacatgccttcctttttccccccccctcctcattaatcattcatgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGACAAGTACGTGGTTGTTGACAGTGGCGGAGGCACAGTAGACCTGACCGTCCATCAGATACGGTTACCAGAGGGGCACCTCAAGGAGCTGTACAAAGCAACAG ccagcacgtcctcaatcatttaattattatccttctccattcctcaccagGGGACAAATATGTGGTTGTTGACAGTGGGGGGGGCACAGTAGACCTAACTGTCCATCAGATACGGTTACCAGAGAGGCACCTCAAGGAGCTGTACAAAGCAACAGgtatgacatgccttcctttttccccccccctcctcattaatcattcatgt #### Hspa12a_ID12811_4 --> 1 - 0 Original Alignment gAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG attttgtactgtataactgatggtaaacgactctggtttctgccttgtaggAGATGGGAGGGAGGTGATCCTGGGGTCTCTAATCGCAAGACTCCAACTGCCATCCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGAGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTAGAAAAGTTCAAGATGAAACTGCATACTACAGGGgtgagggaccacattaaggggagaactagatactgtattataggggattc Alignment from CESAR gAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG attttgtactgtataactgatggtaaacgactctggtttctgccttgtaggAGATGGGAGGGAGGTGATCCTGGGGTCTCTAATCGCAAGACTCCAACTGCCATCCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGAGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTAGAAAAGTTCAAGATGAAACTGCATACTACAGGGgtgagggaccacattaaggggagaactagatactgtattataggggattc Alignment from Spaln_aa2Genome GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG attttgtactgtataactgatggtaaacgactctggtttctgccttgtagGAGATGGGAGGGAGGTGATCCTGGGGTCTCTAATCGCAAGACTCCAACTGCCATCCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGAGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTAGAAAAGTTCAAGATGAAACTGCATACTACAGGGgtgagggaccacattaaggggagaactagatactgtattataggggattc Alignment from Spaln_nt2Genome GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG attttgtactgtataactgatggtaaacgactctggtttctgccttgtagGAGATGGGAGGGAGGTGATCCTGGGGTCTCTAATCGCAAGACTCCAACTGCCATCCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGAGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTAGAAAAGTTCAAGATGAAACTGCATACTACAGGGgtgagggaccacattaaggggagaactagatactgtattataggggattc Alignment from Pairagon GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG attttgtactgtataactgatggtaaacgactctggtttctgccttgtagGAGATGGGAGGGAGGTGATCCTGGGGTCTCTAATCGCAAGACTCCAACTGCCATCCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGAGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTAGAAAAGTTCAAGATGAAACTGCATACTACAGGGgtgagggaccacattaaggggagaactagatactgtattataggggattc Alignment from Exonerate_protein2genome GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG attttgtactgtataactgatggtaaacgactctggtttctgccttgtagGAGATGGGAGGGAGGTGATCCTGGGGTCTCTAATCGCAAGACTCCAACTGCCATCCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGAGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTAGAAAAGTTCAAGATGAAACTGCATACTACAGGGgtgagggaccacattaaggggagaactagatactgtattataggggattc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGATGGGAAGGAGGTGACCCTGGTGTTTCCAACCAGAAGACCCCGACCACCATCTTGCTGACACCAGAGAGGAAGTTCCACAGCTTTGGGTACGCTGCCAGGGACTTCTACCATGACCTGGACCCCAGTGAGGCCAAGCAATGGCTGTACTTGGAGAAGTTCAAGATGAAACTCCACACCACAGGG attttgtactgtataactgatggtaaacgactctggtttctgccttgtagGAGATGGGAGGGAGGTGATCCTGGGGTCTCTAATCGCAAGACTCCAACTGCCATCCTGCTGACACTAGAGAGGAAGTTTCACAGCTTTGGATATGCTGCCAGAGATTTTTACCATGACCTAGATCCCAGTGAGGCTAGGCAGTGGTTGTACTTAGAAAAGTTCAAGATGAAACTGCATACTACAGGGgtgagggaccacattaaggggagaactagatactgtattataggggattc #### Hspa12a_ID12812_3 --> 0 - 2 Original Alignment AACGATGCTGACCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGcg agaacactgaggcaatccactcaccccttttatgtatttatttcatgtagAATGATGCTGACCCAGTTTCAGAACAACAAACCTTTCTAGTGATCTTGTCCATTGACTTTGGGAGCACATCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGTATGCATCCATGTAATGcggtaaatttgccaaggtgtgggagacacaaggtcccttgggtatggcctgc Alignment from CESAR AACGATGCTGACCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGcg agaacactgaggcaatccactcaccccttttatgtatttatttcatgtagAATGATGCTGACCCAGTTTCAGAACAACAAACCTTTCTAGTGATCTTGTCCATTGACTTTGGGAGCACATCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGTATGCATCCATGTAATGcggtaaatttgccaaggtgtgggagacacaaggtcccttgggtatggcctgc Alignment from Spaln_aa2Genome AACGATGCTGACCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGCG agaacactgaggcaatccactcaccccttttatgtatttatttcatgtagAATGATGCTGACCCAGTTTCAGAACAACAAACCTTTCTAGTGATCTTGTCCATTGACTTTGGGAGCACATCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGTATGCATCCATGTAATGCGgtaaatttgccaaggtgtgggagacacaaggtcccttgggtatggcctgc Alignment from Spaln_nt2Genome AACGATGCTGACCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGCG agaacactgaggcaatccactcaccccttttatgtatttatttcatgtagAATGATGCTGACCCAGTTTCAGAACAACAAACCTTTCTAGTGATCTTGTCCATTGACTTTGGGAGCACATCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGTATGCATCCATGTAATGCGgtaaatttgccaaggtgtgggagacacaaggtcccttgggtatggcctgc Alignment from Pairagon AACGATGCTGACCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGCG agaacactgaggcaatccactcaccccttttatgtatttatttcatgtagAATGATGCTGACCCAGTTTCAGAACAACAAACCTTTCTAGTGATCTTGTCCATTGACTTTGGGAGCACATCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGTATGCATCCATGTAATGCGgtaaatttgccaaggtgtgggagacacaaggtcccttgggtatggcctgc Alignment from Exonerate_protein2genome AACGATGCTGACCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGCG agaacactgaggcaatccactcaccccttttatgtatttatttcatgtagAATGATGCTGACCCAGTTTCAGAACAACAAACCTTTCTAGTGATCTTGTCCATTGACTTTGGGAGCACATCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGTATGCATCCATGTAATGCGgtaaatttgccaaggtgtgggagacacaaggtcccttgggtatggcctgc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACGATGCTGACCCCGTCTCTGAGCAGCAGACCTTTCTCGTGGTGGTGGCCATCGACTTTGGGACCACGTCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGAATGTATCCACGTGATGCG agaacactgaggcaatccactcaccccttttatgtatttatttcatgtagAATGATGCTGACCCAGTTTCAGAACAACAAACCTTTCTAGTGATCTTGTCCATTGACTTTGGGAGCACATCCAGTGGCTATGCCTACAGCTTTACCAAGGAGCCAGTATGCATCCATGTAATGCGgtaaatttgccaaggtgtgggagacacaaggtcccttgggtatggcctgc #### Ina_ID10071_2 --> 0 - 2 Original Alignment GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACag ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACaggtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa Alignment from CESAR GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACag ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACaggtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa Alignment from Spaln_aa2Genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACAGgtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa Alignment from Spaln_nt2Genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACAGgtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa Alignment from Pairagon GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACAGgtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa Alignment from Exonerate_protein2genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACAGgtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa Alignment from Exonerate_coding2genome GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACAGgtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa Alignment from GeneWise GACAGCATTGGGCAGCTGGAAAGTGACCTGAGGAACACAAAAAGCGAGATGGCACGCCACCTTCGGGAATACCAGGACTTGCTCAATGTCAAAATGGCCCTTGACATTGAGATCGCAGCTTACAG ctcaagtctggagtccttgatctatacataggctctttccttccctacagGACAGCATTGGACAGCTGGAAAGTGACCTGAGGAACACTAAAAGTGAGATGGCGCGCCACCTTCGGGAATATCAGGACTTGCTCAATGTGAAAATGGCCCTTGACATTGAGATTACAGCTTACAGgtgagtagggctgtatgatctccctaatgaatgatgtgtattctggagaa #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg #### Incenp_ID2616_3 --> 1 - 1 Original Alignment gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCA------GCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagaTTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTtgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg Alignment from CESAR gTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCG------TCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTt tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagaTTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTtgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg Alignment from Spaln_aa2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCT---GCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagATTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGCATTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTTgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg Alignment from Spaln_nt2Genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAGG------AGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCA------GCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagATTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGC---ATTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGG------GGACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTTgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg Alignment from Pairagon GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAG------GAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCG------GCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagATTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGC---ATTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGG------GGACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTTgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg Alignment from Exonerate_protein2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagATTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTTgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg Alignment from Exonerate_coding2genome GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCG------GCAGCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagATTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTTgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg Alignment from GeneWise GTTATCCCGCAGAAAGTCTCGGAGCAGTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATT------GTTGAGGAGAATGGCTTCCCTGTGTTGCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCA------GCGTCTGTGGCATCAGCTTCTTCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAACGACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCACCCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAACTCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCAAGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGTGCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCAGTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAACAAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGCTCGAATCATTT tgttgggtcatcccgtggaaccctcactgtcctcctttccctgttgacagATTGTCGCACAGAAAGTCACGGAGCAGCCTGGTAGGTAGTCGATATCTCAGGAGTAAGCCTGTCATAATTGCTGAAGTAGATGAGAATGGTTTCCCTGTTTTGCAGTGGATAACTCATGCTACAGCAGCAGCAGCAGCAGCTGCAGCAGCAACAGCAACATCTGTTGCATCAGCTTCTTTTCCCTCCACTTCAGGATCCCCTACAGTACTGACCAAGAAAGCGGTGGTAGAGATAAGTACAAGTGAACGACTTAGTGCA---TTACAACTCACTAAGCTAAAAGACAGCCTGCCCCCATCTCCCGTTTCCCACGGCACGCTGACCTCAGATAAAGAATTGACACCCAAAAAGTCAGAGTCAGGAAAACTTGATTCTGTCACAGTAAACTCGCTCATGGCTACCCCTCAGAGCCCCAGGAACCGAGGGGTAGGGGAAGGACGCTCTGTCTCCAAGCTCAAGATTGCACAGGCATCCTGGGGG------GACTCCCCTGGTTCAGCAGAGTTGCCGTGGGAAGAGCAGGTACTTTCCCCTATTTTGCTGAACAACATCTTGCCCACAACCACACAAAGCCACCTTGGGAATATCCACTCACTACAACGGAGCCTGATTTCTCAGGATTCCCATGTGCCACTAGCCTCAAAGTATAACTTGGTGGCTAAACAAAAGAATGGGACTCGCAGGTCCAGCAGAAGAGTTGCAAAACAGGCTGCCAAGGAGCCCGAGGCTTCTGCTCAAATCATTTgtgagcgagacactgatgcgggtcaaggctattgtaagtggtccctggtg #### Incenp_ID2617_2 --> 1 - 2 Original Alignment aGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAag atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagaGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGAA------GATCCTGTGATAAAGaggtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag Alignment from CESAR aGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAag atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagaGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGAA------GATCCTGTGATAAAGaggtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag Alignment from Spaln_aa2Genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagAGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGAA------GATCCTGTGATAAAGAGgtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag Alignment from Spaln_nt2Genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagAGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGA------AGATCCTGTGATAAAGAGgtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag Alignment from Pairagon AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagAGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGA------AGATCCTGTGATAAAGAGgtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag Alignment from Exonerate_protein2genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagAGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGAA------GATCCTGTGATAAAGAGgtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag Alignment from Exonerate_coding2genome AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagAGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGAA------GATCCTGTGATAAAGAGgtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag Alignment from GeneWise AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGGGTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAG atctcttcatagcctagcaggccctaagccccccaaaaaaaatggtccagAGTATTTATCAATGAGCCAGAGCAGATACCCAAAACTCCTTCTCAGAAAACTCACCGAAAGAAGTGGCGGGTGACAAACATTCAGGATGAA------GATCCTGTGATAAAGAGgtgagttagcaacattgtgctgggggaggcctggagtcattagatgccag #### Jak2_ID6231_7 --> 0 - 2 Original Alignment GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATAttgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa Alignment from CESAR GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATAtc tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATAttgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa Alignment from Spaln_aa2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa Alignment from Spaln_nt2Genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa Alignment from Pairagon GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa Alignment from Exonerate_protein2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa Alignment from Exonerate_coding2genome GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa Alignment from GeneWise GAGATAGAACTTAGCTCATTAAAAGAAGCCTTGTCATTCGTGTCATTAATTGACGGGTATTACAGACTAACTGCGGATGCGCACCATTACCTCTGCAAAGAGGTGGCTCCCCCAGCTGTGCTCGAGAACATACACAGCAACTGCCACGGCCCAATATC tttttgatactgcatattgtggttatatctaactaggaccctttcctcagGAGATAGAGCTTACCTCACTCAAGGAAGCTCTGCCATCTGTATCCTTGATTGATGGGTACTACAGACTGACAGCGGATGCACACCATTATCTCTGCAAGGAGGTGGCACCCCCAACAGTGCTTGAGAATATACACAGCAACTGCCATGGCCCCATATTgtaaggaatcctacattctgttggcataacataacagcaggatttcacaa #### Jak2_ID6233_9 --> 0 - 1 Original Alignment CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAg agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAggtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt Alignment from CESAR CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAg agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAggtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt Alignment from Spaln_aa2Genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAGgtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt Alignment from Spaln_nt2Genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAGgtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt Alignment from Pairagon CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAGgtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt Alignment from Exonerate_protein2genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAGgtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt Alignment from Exonerate_coding2genome CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAGgtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt Alignment from GeneWise CGAGAAAATGTCATTGAATATAAACACTGTTTGATTACGAAGAATGAGAATGGAGAATACAACCTCAGCGGGACTAAGAGGAACTTCAGTAACCTTAAGGACCTTTTGAATTGCTACCAGATGGAAACTGTGCGCTCAGACAGTATCATCTTCCAGTTTACCAAATGCTGCCCCCCAAAGCCAAAAG agtacccacctattgagattactctgccaattaactatatttttttcaagCGGGAAAACATCATTAAATACAAACACTGTCTAATTACAAAGAATGAGAATGGAGAATATAACCTCAGTGGGACTAAAAGGAACTTTGGTAATCTCAAGGACCTTTTGAATTGCTATCAGATGGAAACTGTGCGATCAGACAGTATCATTTTCCAGTTTACCAAATGCTGCCCGCCAAAGCCCAGAGgtaagtattaacctcccgtgaatgggtccttgtttgcacacagcacattt #### Jak2_ID6236_12 --> 0 - 1 Original Alignment TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGagtaaagagggcaggagataagggcagacatacaaggcataggcttggatg Alignment from CESAR TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGa atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGagtaaagagggcaggagataagggcagacatacaaggcataggcttggatg Alignment from Spaln_aa2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtaaagagggcaggagataagggcagacatacaaggcataggcttggatg Alignment from Spaln_nt2Genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtaaagagggcaggagataagggcagacatacaaggcataggcttggatg Alignment from Pairagon TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtaaagagggcaggagataagggcagacatacaaggcataggcttggatg Alignment from Exonerate_protein2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtaaagagggcaggagataagggcagacatacaaggcataggcttggatg Alignment from Exonerate_coding2genome TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtaaagagggcaggagataagggcagacatacaaggcataggcttggatg Alignment from GeneWise TCTTTCTTCGAAGCAGCAAGCATGATGAGTCAGCTTTCTCACAAGCATTTGGTTTTGAATTATGGTGTCTGTGTCTGTGGAGAGGAGA atgtaccctcacattctcacatttcttatctggtttgaatgtttcagcagTCTTTCTTCGAAGCAGCAAGTATGATGACTCAGCTTTCTCATGAACATTTGGTTTTAAATTATGGTGTCTGTGTTTGTGGGGAGGAGAgtaaagagggcaggagataagggcagacatacaaggcataggcttggatg #### Jak2_ID6239_15 --> 2 - 0 Original Alignment ttCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagttCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct Alignment from CESAR ttCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagttCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct Alignment from Spaln_aa2Genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagTTCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct Alignment from Spaln_nt2Genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagTTCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct Alignment from Pairagon TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagTTCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct Alignment from Exonerate_protein2genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagTTCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct Alignment from Exonerate_coding2genome TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagTTCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct Alignment from GeneWise TTCTTCAGGAGAGAATACCATGGGTACCTCCTGAATGCATTGAGAATCCTAAAAATCTCAATCTGGCAACAGACAAGTGGAGCTTCGGGACCACTCTGTGGGAGATCTGCAGTGGAGGAGATAAGCCCCTGAGTGCTCTGGATTCTCAAAGA gccatactaacagggctcaagtaatggtctcaccaactgtctgctttcagTTCTTCAGGAGAGGATACCCTGGGTACCCCCTGAATGTATTGAGAACCCTAAGAATCTCAATCTGGTGACTGATAAGTGGAGCTTTGGGACCACTCTGTGGGAGATATGTAGTGGAGGAGATAAACCCCTAAGCACTTTAGATTCTCAAAGGgtaagtccacgcaacatggtgggagaagcaccaggtcctgtggggctcct #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTggtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTggtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG tcatttgtgaagcagcctgcatccccaaagccgtgttgcttctctttcagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCGAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAACCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGACCTTAATAGTCTTTTTACACCTGgtgatggctggtttctcaccactgatggatttgtcttctgtaacctcaga #### Jak2_ID6244_20 --> 0 - 2 Original Alignment GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCtg cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCtggtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg Alignment from CESAR GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCtg cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCtggtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg Alignment from Spaln_aa2Genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCTGgtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg Alignment from Spaln_nt2Genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCTGgtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg Alignment from Pairagon GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCTGgtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg Alignment from Exonerate_protein2genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCTGgtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg Alignment from Exonerate_coding2genome GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCTGgtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg Alignment from GeneWise GGCATGGAATATCTTGGTACAAAAAGGTATATCCACAGGGACCTGGCAACAAGGAACATATTGGTGGAAAATGAGAACAGGGTTAAAATAGGAGACTTCGGATTAACCAAAGTCTTGCCGCAGGACAAAGAATACTACAAAGTAAAGGAGCCAGGGGAAAGCCCCATATTCTG cacataaaccatcatcatattagcttttatactttatgtcttatttttagGGGATGGAATTCCTAGGTACAAAAAGATATATCCACAGGGACCTGGCAACAAGAAACATATTGGTGGAGAATGAAAACAGGGTTAAAATAGGAGACTTTGGATTAACAAAAGTGTTGCCACAGGACAAGGAATACTACAAGGTAAAGGAGCCAGGGGAGAGCCCCATTTTCTGgtgacttgaacatggtggcccttctaaaaacagctgcacttatcctattg #### Kank1_ID5455_2 --> 2 - 1 Original Alignment aaAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAG------ATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTAT---AACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAg atctgacctgtgtggcacatacaacatcctaacaagtcatcttcctgcagaaAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCC------AAAGACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACTC---AGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGC------AATTATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCTA---------ATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGGGTAGTGAG---AACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAA---ACTCATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGCA---GGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGggtgagtggtaccctcaccccactcccctggattacagtaaagatttggag Alignment from CESAR aaAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAg atctgacctgtgtggcacatacaacatcctaacaagtcatcttcctgcagaaAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAAA------GACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACTC---AGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGCAAT---TATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCTA---------ATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGGGTAGT---GAGAACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAA---ACTCATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGCA---GGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGggtgagtggtaccctcaccccactcccctggattacagtaaagatttggag Alignment from Spaln_aa2Genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG atctgacctgtgtggcacatacaacatcctaacaagtcatcttcctgcagAAAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAAA------GACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACTC---AGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGCAAT---TATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCTA---------ATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGGGTAGT---GAGAACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAA---ACTCATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGCA---GGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGGgtgagtggtaccctcaccccactcccctggattacagtaaagatttggag Alignment from Spaln_nt2Genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCA------GATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG atctgacctgtgtggcacatacaacatcctaacaagtcatcttcctgcagAAAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCA------AAGACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACT---CAGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGCAAT---TATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCT---------AATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGG---GTAGTGAGAACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAA---ACTCATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGC---AGGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAGA---TGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGGgtgagtggtaccctcaccccactcccctggattacagtaaagatttggag Alignment from Pairagon AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG atctgacctgtgtggcacatacaacatcctaacaagtcatcttcctgcagAAAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAAA------GACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACT---CAGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGCAAT---TATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCT---------AATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGGGTAG---TGAGAACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAA---ACTCATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGCA---GGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAGA---TGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGGgtgagtggtaccctcaccccactcccctggattacagtaaagatttggag Alignment from Exonerate_protein2genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG atctgacctgtgtggcacatacaacatcctaacaagtcatcttcctgcagAAAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAAA------GACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACTC---AGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGCAAT---TATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCTA---------ATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGGGTAGT---GAGAACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAA---ACTCATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGCA---GGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGGgtgagtggtaccctcaccccactcccctggattacagtaaagatttggag Alignment from Exonerate_coding2genome AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACC------ATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG atctgacctgtgtggcacatacaacatcctaacaagtcatcttcctgcagAAAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAAA------GACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACTC---AGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGCAAT---TATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCTA---------ATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGGGTAGT---GAGAACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAA---ACTCATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGCA---GGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGGgtgagtggtaccctcaccccactcccctggattacagtaaagatttggag Alignment from GeneWise GCTTATACCACAAAAGTTAATGGCTGTGCTGCAGAAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATG------GCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAG atctgacctgtgtggcACATACAACATCCTAACAAGTCATCTTCCTGCAGAAAAAGCAGATGGAGTTCTAAATGGAGAACATAATAAGGAAAAGGAAGACCCATATTTTGTGGAGAGCCCTTATGGTTTTGAGCTAGACTTAGATTTTGTCAAATATGTTGATGATATACAAAAGGGAAATATTATTAAAACACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAGGTCAGGTCCATTCCAGGCCATCAAGGTGTGTGGACTTCCACTGAGTCACTGTCATCCTCCAAA------GACAGCAAGCAGTGTCCAACCTTCCTGCTGGCCAGAAGCCATGTCACCTCCACACCAATCCCACGGCCACCTGCACCATTTGAGACCTCCCCCACTTTTGCAGTGTCGGAAAACCAACACCTGCTGCCCCCTCCCTCAGTGCAACTC---AGGCATAACCTCCATGTCACTAAGACCTTAATGGAGACCGATGGAAGATTAGAAGAAGGACAAGTTACCATGCAAATGCAGATGGCACCAGGTGATGTTAGGAGGCCCAGGTTAGCAAGTTTTGGAGGCACAGGTTCCACAAGCTCTATTCTTTCCTTTGTGGGGTCTGCCAACCACAGCTCTGCAATACATCAGCTTCAGAATGGCTACCAAGGCAAT---TATTACAACAGCCATGTCCCAGCAGCCCCAACAACGTCTTCTATGGGCAGCTCTGCCCGGCACACCCCATTATGTTCTGGGATCTCCACCCCATTGACCAATGTGAGCCCCATGCACCTGCAGCAGATCCGAGAGCAGATGGCTATTGCCTTACAACACCTAAAGGATCTTGAGGAGCAGGTTAGGACCATCCCAGTGCTTCAAGTCAAGATCTCTGTTTTACAAGAAGAAATGAGGCAGTTGGTGTCAGAGTTGAAAAGCCAGCGGAACTCATCGCAGAATGAAGCATGCAGTGTGAGAGAGCGCTCCTATAGTGCAGGTAATGCCTCTCAATTGGAACTACTTGCCCGGGCACGGAGAGGCAGTGGAGAATTATACATTGATTATGAAGAGGAAGAAATGGGGAGTGTAGAGCAGGGCACACAGCGGATCCAGGAATTTCAACTGCTA---------ATGCAAGCACTTGAGCAAAAGTTACAGGATAGCAGCTGTGAGGTAGCATCAGAGCCTGGGGGGAATGGCCAGTGCCCATCCCGGGAGTGTGAGTCCGTAGCTGTGGGTAGT---GAGAACATGAATGATGTTGTTGTATATCACAGGGACTTACGGGTTTGTAAGGATACAGCTGTTGGTACGGTCACTGAAACAACAAATGTTGGAATCAGTGTGTCAGAGGCTATGCTTGGCATTATTACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAAACAATAGATGCCTTGAAAGAAAAAGTCTACCGTTTAGAAGTACAACTTAAAGAAACT---CATGACTGTGAAATGACTAAGCTTAAGCAGGAACTACAGGCTGCTGGATCCAGGAAAAAAGTTGACAAGGCTACAAAGGTTCAACCATTGGTGTTTAGCATATTGGTGGAGGCACTGGTACCAACAAGAGATCAGATGGTAGGCAGTCATGTGGACACAAGGGAGTCATGTGCTGGCACATCTGTGAAGATGAGCAGTATAGGCATCTCCTGCCATCCTGACTGCAAGAACCAAGTTGTGGGATCCGAGCTACCCATGAATTGGTGGGTTGTAAGAGAGAGGGTGGCAATGCATGCTCAGTGCATAGGGAGGTCTGTGGAGACATGTGACCGAAGTGTTGGTGTTGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAAGCTTCTGGGGGTGATCTGCCACTACTTAAAACTAACTTGAACCTCAAAGTTGTGCAATCTATTGGCTGTGGAGATTGTTCTGTAGCTGTGATTGTTTGTTTCCCCAGGGAGTGCACCTCATATAGCATGAACACAGGGGCTGTAGGCCAAGAGGAGGCGGCAGTCATGGCAGTTCCCCAAACCACAGACCAGCATACCAGTACCAATCTAGAGCAGGTAGACCTATGCACTAATACAGAGGCAGCAACCCTAGTCGAGTCCTGTTCCAATACCCTCCTAAGTACCATAGACAGAAAAACAAGTACCCAGACTGTCGAGATGCGGACATTGGCTGTTGGAGAGGGGCGTGTGAGAGACATAAACCCCTTCACAAAGACTCAGTCTGTTGGTTCTGGTACAGTGCTGTCTGGCAACTCTGAATTTGCAAGACCATGTGCAGTAAAGAACAAGGAGTCAGGAGTTGGACAGATAAATATTCAGGACAACTACCTAGTTGGACTCAAGATGAGAACTATAGCA---GGTCCTCCACAGTTGACTGTGGGGTTAATAGGCAGCAGGAGGAGTGTGGGTGTTGGCAATGAGCCTATAAGAGAGTTCCCGGAGGAGTCTCCTCAGCCTCAAGTTGCATCTGGAATGGTGACAGGGTTGGATCACTATATTGAGTGTGTGCAG---ATGCTGGCAGACCAACAGACACTTCTGGTTGAGAACTATGGTGAGCTTGCAGAGGCATTTGGGGAGCCTCATTCACAGATTGGTTCCCTCAACTCACAACTCATAAGCACTGTATCATCCATCAATTCAGTCATGAAGTCTGCAAGTACAGAAGAGCTGAGGAAGTCTGATTTCCAAAAACCCAGTCTGGGTAAGACTGAGGgtgagtggtaccctcaccccactcccctggattacagtaaagatttggag #### Kank1_ID5456_3 --> 2 - 1 Original Alignment gaAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACg aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctaggaAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACagtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg Alignment from CESAR gaAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACg aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctaggaAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACagtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg Alignment from Spaln_aa2Genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctagGAAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACAgtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg Alignment from Spaln_nt2Genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctagGAAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACAgtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg Alignment from Pairagon GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctagGAAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACAgtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg Alignment from Exonerate_protein2genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctagGAAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACAgtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg Alignment from Exonerate_coding2genome GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctagGAAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACAgtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg Alignment from GeneWise GAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACG aagagtaaacctccaaactaacctcatcaacttgttatgtttacttctagGAAATCATTTGGAGTATACCTGTGAATGTGGTGGCCTTCAGTCTGGAGGACTGTTTAATCTACAACCATCCCAGCCTGAAGTGGAAGCGGAGACCGCAGAAGGCAAGCATAGCCGAGGACATGTGCAGTTCCCCATGCAAGGGAGCAACCTGCCCCCAGTAAACCTGACAGATGACCAGATAGCAACTGGACTCTACAgtaaaacttctttcaatctgtcagcgccatcagccattgagcataagctg #### Kank1_ID5463_9 --> 0 - 0 Original Alignment GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAATgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct Alignment from CESAR GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAATgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct Alignment from Spaln_aa2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAATgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct Alignment from Spaln_nt2Genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAATgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct Alignment from Pairagon GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAATgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct Alignment from Exonerate_protein2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAATgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct Alignment from Exonerate_coding2genome GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACA ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAatgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct Alignment from GeneWise GCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT ttccccctattagtcagcattgttagctccctttcttttcatgtgtgcagCCAGGACAAACACCCCTTATGCTAGCCGTGACCCATGGGCGAACAGACATGGTGAAGGGCCTGCTTGCTTGTGGTGCTGATGTCAATATTGAGGAGGATGAAGGCTCCACAGCCCTGATGTGTGCCGGTGAACATGGGGATGTAGAGATTGTGAAGTTGCTGCTGGCCCAAGAGGGGTGCAATGGCCAACTGGAGGATAATgtgacgttgcttgacctccaggtgtgatggggcatcagcccctactttct #### Kat5_ID1112_10 --> 0 - 0 Original Alignment AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc Alignment from CESAR AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc Alignment from Spaln_aa2Genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc Alignment from Spaln_nt2Genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc Alignment from Pairagon AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc Alignment from Exonerate_protein2genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc Alignment from Exonerate_coding2genome AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc Alignment from GeneWise AGTTACTCACAAAACCTGTGTCTTCTGGCCAAGTGTTTCCTGGACCACAAAACACTGTACTATGACACTGACCCCTTCCTCTTCTACGTAATGACGGAGTATGACTGCAAAGGTTTCCACATCGTGGGCTACTTCTCCAAG ccgacatagcatatcatctgctccttaataaattatgtatctcttatcagAGCTACTCCCTGAACTTATGTCTTCTAGCCAAGTGTTTCCTGGAGCACAGATCCCTCTACTATGACACTGACCCCTTTCTCTTTTATGTCATGACTGAGTATGAGTGCAAAGGCTTCCACATTGTGGGCTACCTCTCAAAGgtaagaagtcatgtaggattacaatattgcctgagtcagtgtccctactc #### Kdm2a_ID516_5 --> 2 - 0 Original Alignment ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagggAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt Alignment from CESAR ggAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagggAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt Alignment from Spaln_aa2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt Alignment from Spaln_nt2Genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt Alignment from Pairagon GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt Alignment from Exonerate_protein2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt Alignment from Exonerate_coding2genome GGAGTCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagGGAGCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt Alignment from GeneWise TCGTCGGATGGTGGATGTCATGGATGTGAACACACAGAAGGGGATTGAAATGACCATGGCACAATGGACACGATACTATGAGACTCCAGAGGAAGAGCGAGAAAAACTCTATAATGTTATCAGCCTAGAGTTTAGCCACACCAGGCTTGAGAATATGGTGCAGCGGCCTTCCACG ctgagacagatactcagataggaattttcatctgcactcttaccttgcagggagCCGTCGGATGGTGGATGTCATGGATGTGAACACACCGAAAGGAATTGAAATGACCATGGCACAATGGACTCGATACTATGAGACTCCAGAGGAAGAGCGAGAGAAGCTCTACAATGTCATCAGCCTAGAGTTTAGCCACACTAGACTTGAGAATATGGTGCAGCAACCGTCCACAgtaaggttttgctgtcccttcttaacatgttgatatatcttttttttttt #### Kif11_ID7312_2 --> 1 - 0 Original Alignment aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagaCCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta Alignment from CESAR aCCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagaCCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta Alignment from Spaln_aa2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagACCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta Alignment from Spaln_nt2Genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagACCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta Alignment from Pairagon ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagACCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta Alignment from Exonerate_protein2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagACCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta Alignment from Exonerate_coding2genome ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagACCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta Alignment from GeneWise ACCATTTAATCTGGCAGAGCGGAAAGCTAATGCCCACTCAGTAGTGGAATGTGACCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACGGACAAGACCTCCAAGAAAACATACACGTTTGATATG gtactcttactggaatcaagaatttctacaacctgtgcttctcttcccagACCATTTAACTTGGCAGAGCGTAAGGCTAATGCTCACTCAGTATTAGAATGTGATCATGCACGGAAAGAAGTCAGTGTACGGACTGCAGGGTTGACTGACAAGACCTCTAAGAAAAGTTATACATTTGATATGgtagctattgttttctatacactgaggttttggtaatgtgagtgatgcta #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTgtgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTgtgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt #### Kif11_ID7314_4 --> 1 - 0 Original Alignment aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagaTATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct Alignment from CESAR aTATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagaTATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct Alignment from Spaln_aa2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagATATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct Alignment from Spaln_nt2Genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagATATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct Alignment from Pairagon ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagATATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct Alignment from Exonerate_protein2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagATATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct Alignment from Exonerate_coding2genome ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagATATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct Alignment from GeneWise ATATGGTCAGACTGGCACTGGAAAAACTTTTACAATGGAAGGTGAAAGGTCACCTAATGAAGTATATACCTGGGAGGAG atttttgctgtttgtgttaatgtaattctggaaaatgcttgtggttacagATATGGCCAGACAGGAGCTGGCAAAACTTTTACAATGGAGGGTGAAAGATCACCTAATGAAGTATATACCTGGGAGGAAgtgagtaatcttgtctttttttgttagttgtagcagaaaactacccagct #### Kif11_ID7316_6 --> 0 - 2 Original Alignment TGATGATCCCCGGAACAAG AGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTag TGATGATCCCCGGAACAAGgtaagtatgtcttcgtgtgctcttctcacagAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCaggtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg Alignment from CESAR TGATGATCCCCGGAACAAG AGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTag TGATGATCCCCGGAACAAGgtgaggatgtcttcgtgtgctcttctcacagAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCaggtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg Alignment from Spaln_aa2Genome TGATGATCCCCGGAACAAG AGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTAG TGATGATCCCCGGAACAAGgtaagtatgtcttcgtgtgctcttctcacagAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCAGgtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg Alignment from Spaln_nt2Genome TGATGATCCCCGGAACA-------------------------------AGAGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTAG TGATGATCCCCGGAACAAGGTAAGTATGTCTTCGTGTGCTCTTCTCACAGAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCAGgtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg Alignment from Pairagon TGATGATCCCCGGAACAAG AGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTAG TGATGATCCCCGGAACAAGgtaagtatgtcttcgtgtgctcttctcacagAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCAGgtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg Alignment from Exonerate_protein2genome TGATGATCCCCGGAACAAG AGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTAG TGATGATCCCCGGAACAAGgtaagtatgtcttcgtgtgctcttctcacagAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCAGgtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg Alignment from Exonerate_coding2genome TGATGATCCCCGGAACAAG AGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTAG TGATGATCCCCGGAACAAGgtaagtatgtcttcgtgtgctcttctcacagAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCAGgtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg Alignment from GeneWise TGATGATCCCCGGAACAAG AGAGGAGTGATAATCAAAGGCTTAGAGGAAATCACAGTACACAATAAAGATGAAGTCTACCAAATCTTAGAGAAGGGAGCAGCAAAAAGGACAACTGCAGCAACCTTGATGAATGCTTACTCTAG TGATGATCCCCGGAACAAGgtaagtatgtcttcgtgtgctcttctcacagAGGGGAGTGATAATCAAAGGTCTAGAGGAAATCACAGTCCACAATAAGGGAGAAGTGTACCAGATCTTGGAGAAGGGGGCAGCAAAAAGGACAACTGCAGCAACTTTAATGAATGCATACTCCAGgtaagatggtatggtgccatcttgctatctcatgtgactaaatcgttggg #### Kif11_ID7318_8 --> 0 - 0 Original Alignment GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from CESAR GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Spaln_aa2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Spaln_nt2Genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Pairagon GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Exonerate_protein2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from Exonerate_coding2genome GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca Alignment from GeneWise GTTGATCTTGCAGGAAGTGAAAATATTGGGCGTTCTGGAGCTGTTGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTGACTCTGGGAAGAGTTATTACTGCTCTTGTGGAAAGAACACCTCATATTCCTTATCGAGAATCTAAACTAACTAGAATCCTGCAAGATTCTCTTGGGGGACGTACAAGAACATCTATAATTGCAACCATTTCCCCTGCATCTTTCAATCTTGAG agctgcagcttccacagctcaacaacatatcttcattactctttttccagGTAGATCTTGCTGGAAGTGAAAATATTGGGCATTCTGGAGCGGTAGACAAGAGGGCCCGGGAAGCTGGAAATATCAACCAATCCCTCTTAACCCTGGGAAGAGTAATTACTGCTCTCTTAGAGAGAACGCCTCATATTCCCTATCGAGAATCTAAACTAACCAGAATCCTACAAGATTCTCTTGGCGGACGTACTAGGACTTCTATAATTGCAACCATTTCACCTGCATCTTTCAATCTTGAAgtagtgcaactagtagccatggcacttgggagccctctgcagccattgca #### Kif11_ID7319_9 --> 0 - 0 Original Alignment GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg Alignment from CESAR GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg Alignment from Spaln_aa2Genome GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg Alignment from Spaln_nt2Genome GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg Alignment from Pairagon GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg Alignment from Exonerate_protein2genome GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg Alignment from Exonerate_coding2genome GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg Alignment from GeneWise GAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAAGTTAATCAAAAACTCACCAAAAAAGCTCTTATTAAG tatgatgcttatgcttttagtgattaataacagcctttccttgcccacagGAAACTCTGAGTACATTGGAATATGCTCACAGAGCAAAGAACATAATGAATAAGCCTGAGGTTAATCAAAAACTAACCAAAAAAGCTCTTATTAAGgtaattgagagtattggttccttgtttggtgtacgttaacctttgaagtg #### Kif11_ID7321_11 --> 1 - 0 Original Alignment aGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagtGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat Alignment from CESAR aGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagtGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat Alignment from Spaln_aa2Genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagTGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat Alignment from Spaln_nt2Genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagTGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat Alignment from Pairagon AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagTGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat Alignment from Exonerate_protein2genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagTGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat Alignment from Exonerate_coding2genome AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagTGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat Alignment from GeneWise AGCCATGAATGGAAAGGTAACTGTTCAGGAGGAACAAATTGTTGAGTTGGTTGAAAAAATCGCTGTTCTTGAGGAGGAGCTCAGTAAG cccaaatcccagaacaaaaagctaactgtttttcttcttttctttgtcagTGTCATGAATGGAAAGGTAACTGTTCGGGAGGAACAAATTGTAGAACTGGTGGAAAAGGTTGCTGTCCTTAAAGAGGAACTCAGTAAGgtaagagccgctacacaagcatagaacctaggttagaggggttgctaaat #### Kif11_ID7322_12 --> 0 - 0 Original Alignment GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt Alignment from CESAR GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt Alignment from Spaln_aa2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt Alignment from Spaln_nt2Genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt Alignment from Pairagon GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt Alignment from Exonerate_protein2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt Alignment from Exonerate_coding2genome GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt Alignment from GeneWise GCTACAGAGTTATTTATGGATAGTAAGAACGAACTTGACCAGTGTAAATCTGACCTGCAAACCAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACAAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGAACCGAGAAGACACTGCATGACACGGCCAGCAAG agtaccatactattctgcaataaataaattttttttacttccttttgaagGCTACAGAGTTATTTATGGATAGTAAGAATGAACTTGACCAGTGTAAGTCCGACCTACAAACAAAGACACAGGAACTTGAAACCACTCAGAAACATTTGCAAGAAACTAAATTACAACTGGTTAAAGAGGAATATGTCTCTTCAGCCTTGGAAAGGACCGAGAAGACACTGCATGACACGGCCAGCAAGgtaagacttgaaaattattaaattccttgtttatttaggagacaatattt #### Kif11_ID7325_15 --> 0 - 0 Original Alignment GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact Alignment from CESAR GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact Alignment from Spaln_aa2Genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact Alignment from Spaln_nt2Genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact Alignment from Pairagon GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact Alignment from Exonerate_protein2genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact Alignment from Exonerate_coding2genome GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact Alignment from GeneWise GATGAACTTGTGACCGACCTTTTCACTTCCCTGAAGACCATCGTAGCCCCTAGTGTGGTTTCCATCTTGAACATAAATAAGCAGCTACAGCATATTTTCAGGGCTTCATCGACAGTGGCTGAAAAG cacatacaaaatgaccacatgctaaggatgttggtcttcattctttccagGATGAACTCCTGACTGATCTCTTCACTTCACTGAAGACCATTATAGCACCAAGTGTGGTCTCCATCTTGAACATAAATAAGCAACTGCAGCATATCTTCAGGGCTTCATCCAAAGTGGCTGATAGGgtaagtatacagcttaattgaatgtcctatgtggacaagagatcagcact #### Kif11_ID7330_20 --> 2 - 0 Original Alignment gtATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaaggcATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTGAT---CTCCTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac Alignment from CESAR gtATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaaggcATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTGAT---CTCCTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac Alignment from Spaln_aa2Genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaagGCATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTGATCTC---CTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac Alignment from Spaln_nt2Genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaagGCATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTG---ATCTCCTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac Alignment from Pairagon GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaagGCATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTG---ATCTCCTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac Alignment from Exonerate_protein2genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaagGCATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTGAT---CTCCTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac Alignment from Exonerate_coding2genome GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaagGCATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTGAT---CTCCTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac Alignment from GeneWise GTATGACACCAGAGAGGAAAAAATATTTATATCCAACAACACTTGTGAGAACTGAACCACGAGAGCAGCTCCTTGATCAGCTGCAAAAGAAACAACCACCAATGATGCTAAACAGCTCAGAAGCCAGCAAGGAGACCAGTCAG atttctccgaccagtgaattatacctacatggatatttttgtcttcaaagGCATGACCCCAGAAAGGAAAAAATATTTGTATCCAACCACACTTGTAAGAACAGAGCCACGTGAT---CTCCTTGATGAGTTGCAAAAGAAGCAACATCCTATGATGTTAAACAGCTCAGAAGCCAGTAAGGAAACTAGTCAGgtaagttaaagtatatttcctaatttatgggtgcacatgaatgagggtac #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagtCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagtCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagTCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagTCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagTCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagTCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagTCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA ttatagttgcatgaaaatattatatttgtttgtttctgtgtctcacatagTCATAGCATATTCACTATCAGACTATTACAAATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtgaggggggtaattttgaaagctggggggtctttttggaacaaaagtct #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagaTTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAaagtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagaTTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAaagtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA ctttttggaacaaaagtctttgcagcactgactctagtttatctcctcagATTGTCGCTGTGTGATCTTGCTGGTTCAGAACAAAGCATGAAGACACAGAATGAAGGTGAAAGGCTAAGAGAGGCTGGGAATATCAACACACCCTTATTGACCTTGGGAATGTGTGTCAATGTGTTAAAGAACAGTGAAAAGTCAAAgtaagagtcattagtgtcataaaatctaactttgtgagcatttggcagct #### Kif20b_ID7012_17 --> 0 - 1 Original Alignment GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAg tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAggtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct Alignment from CESAR GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAg tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAggtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct Alignment from Spaln_aa2Genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAGgtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct Alignment from Spaln_nt2Genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAGgtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct Alignment from Pairagon GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAGgtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct Alignment from Exonerate_protein2genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAGgtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct Alignment from Exonerate_coding2genome GTTGATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAGgtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct Alignment from GeneWise ---GATACATCTTTAACCAGCAATAAGTCAACTTGTAATGAAACAAGTGAAATGCCAAAGAACAGTAGAGCCCAGACACATTCAGAAAGGAAAAGATTAAATGAAGATGGACTTCAGCTTGGTGAGCCACCAGCAAAGAAAG tgttgtagttattggccttttggcacatggttttgtgttattctctctagGTTGATACATCCTTAACCAGCAACAAGTCTACTTGCAATGAAACAAGTGAAATGCCTAAGAATAGTAGAGCCCAAACACAGTCAGAAAGGACAAGATTAAATGGGGATGGACTTCAGCTTGGTGAGCTACCAGCGAAGAAAGgtaatgaaataacttggtccaagcagcaggaggggaatgaccattatgct #### Kif20b_ID7013_18 --> 2 - 2 Original Alignment ggCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTAAG---CGCTTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAaa aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagggCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACACA---GAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGaagtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat Alignment from CESAR ggCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTAAGCGC---TTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAaa aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagggCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACACA---GAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGaagtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat Alignment from Spaln_aa2Genome GGCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTAAGCGC---TTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAAA aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagGGCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACACA---GAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGAAgtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat Alignment from Spaln_nt2Genome GGCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTA---AGCGCTTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAAA aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagGGCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACAC---AGAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGAAgtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat Alignment from Pairagon GGCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTA---AGCGCTTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAAA aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagGGCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACAC---AGAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGAAgtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat Alignment from Exonerate_protein2genome GGCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTAAGCGC---TTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAAA aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagGGCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACACA---GAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGAAgtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat Alignment from Exonerate_coding2genome GGCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTAAGCGC---TTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAAA aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagGGCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACACA---GAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGAAgtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat Alignment from GeneWise GGCTTATACTCGTTAGTCCACCCATCACCGAAGAGCAAAACAAAATGGGAGAAATGCAACAGTCTGTTTCAGAAGTTGTGGAAGGCAATAGAGTTTTGAAGGAAAAGAATGAAGAGCTAAAAAGACTTTTAACTATTGGTGAGAATGAACTCAGAAATGAAAAGGAGGAAAAAGCAGAATTAAATAAACAGGTTGTGAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAAAAGAACTCATCCCTGAGGGCAGATGTAGAGCAAATCCAGGCCAGTTACAACAGTGCAGTTGCCGAGCTGCAAACACAGAAAGCCGTGAACCAGGAGCAGAGGGACAGGATCCTGAAATTATCACAGGAGATGGAGACTGCTGCAAGAAGTATCGAGAGCAATGTTTCACAGATAAAACAAATGCAAACAAAAATAGATGAATTGCGGTCACTTGATTCACCTTCTCATATTTCAAAAATAGATTTACTTAATCTCCAGGATCTATCAAGTGGTGCTAAAGGGGATAATTGTCTGAACACATCACAGCAGCTTCCAGGTGGTGACTTCTCAAGTACGTGGGTTAAAGAATATCACACTCAGGAGATCAGCAGGGAAAATTCCTTCCACGCGAGTATTGAAGCCATCTGGGAAGAATGTAAAGAGATTGTGAAGGCTTCCTCCAAAAAGTCTCATCAGATTCAGGGACTAGAAGAACAAATTGAAAAATTACAGGTGGAAGTAAAAGGATACAGGGAGGAGAACAGTGACCTCCGAGCACAGGAGAGCCAGGGTAAGAATAGAGATCACCAGCTGAAGGAGAAAGAAAGTCTCATCCAGCAGCTCAGAGAAGAACTGCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTACAGCTTGTAGCGGAAAGAGAGCAAGCTCTTTCAGAGCTTTCCCAGGATGTTACCTGCTACAAGGCAAAAATAAAGGACCTTGAGGTGATAGTAGAGACCCAGAAAGATGAGTGTAAGCGC---TTAGTTGAGTTAGAGCAAAGCATTTTAGAGAAGGAATCTGCCATCTTAAAACTGGAAGCAAATCTAAAGGAATGTGAAGCAAAGCATCAGGATCACATCAGAACCAACGATCTAAGTGCAAAGGAAGTCAAGTTCAGAGAAGAAGTCACACGGTTGGCGAATAATTTGCATGATACGAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATGAAATTAGCAGACAAGAGACAGAAAA aacagggttttactgttgcttttcttcctaacacggcttctctgctgcagGGCTTATACTTGTTAGTCCACCCATCACTGAAGAACAGAACAAGATGGGAGAGATGCAACAATCTGTTTCAGAAGTTGTGGAAGGCAATAGGGTTTTGAAAGAAGAAAATAATGAGCTTAAAAGACTTTTAACTATTGGTGAGAATGACCTTAGGAATGAAAAAGAGGAAAAGGCGGAATCAAACAAGCAGGTTGTAAGTTTGCAGCAGCAACTTCGTTTCTTTGAAGAACAAAACTCATCCCTCAGAGCAGACGTGGAACAAGTCCAAGCCAGCTATAACAGTGCAGTAGCTGAGCTACAAACACAAAAAGCTGTAAACCAGGAGCAGAGGGACAGAATCCTGAGATTATCACAGGAAATGGAGACTGCTGCAAGAAGCATTGAAAGGAATGTCTCACAAATAAAACAAATGCAGACAAAAATAGATGCATTGCGGTCACTTGATTCACCTTCTCATAATTCAAAAATAGATTTACTAAACCTCCAAGATTTGTCAAGTGGTGCCAAGGGAGATAATTGTTTGAATACATCACAACAGCTTCCAGGTGGAGACTTTTCAAGTACATGGGTCAAAGAATATCACACA---GAAATCAGCCGTGAAAATTCCTTCCATGCAAGTATTGAGGCAATCTGGAAGGAATGCAAGGAGATTGCAGAGGCCTCATCCAAGAAGTCTCACCAGCTCCAGGGTCTAGAAGAACAGGTTGAAAAGTTACAGGTGGAGGTAAAAGGATACAGGGAGGAAAATAGTGACCTGCGTGCACAGGAGAGCCAGGGTAAGAATAGAGACCACCAGCTCAAGGAGAAAGAATGTCTTGTTCAGCAGCTTAGGGAAGAACTCCAAGAAAAAAGTGTCAGTCTCCGTGTTCAAGTGCAGCTTGTAGCAGAGAGGGAACAAGCCCTGTCAGAGCTTACGCAAGATGTTACTTGTTACAAGGCAAAGATAAAGGACCTAGAAGTTATAGTGGACACTCAGAAAGACGAGTGTAAGCAGCATTTAGTTGAATTAGAGCAAAGTATTTTAGAAAAGGAATCCGCGATCCTAAAATTGGAAGCAAATCTAAAGGAATGTGAAGCTGAGCATCAGGATCATATCAGAACCAATGACCTAAGCACAAAGGAAGTCAAGTCCAGGGAAGAGGTGACAAGATTGGCAAATAATTTGCATGATACAAAACAGTTACTTCAGTCAAAGGAAGAAGAAAATAAGATTAGCCAACAAGAGACAGAGAAgtaagttaagccgtatttagttagacacctaaaatagtatttttcagtat #### Kif20b_ID7015_20 --> 0 - 0 Original Alignment GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg Alignment from CESAR GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg Alignment from Spaln_aa2Genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg Alignment from Spaln_nt2Genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg Alignment from Pairagon GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg Alignment from Exonerate_protein2genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg Alignment from Exonerate_coding2genome GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg Alignment from GeneWise GTATCTGTAATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAAAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACCATTCAGCAACTTAAG aaagaatgcccccaagccattcaatatgggaaccttggttctctcctcagGTATCCGTGATGCGTGATGAAGAGAAATTATTGAGGATTAAAATTAATGAACTGGAGAAAAAGAAGAACCAGTATTCTCAGGACTTAGATATGAAACAACGAACAATTCAGCAACTTAAGgtaggcgttagtttaatcacatctagataatattggatttactataaggg #### Kif20b_ID7020_25 --> 0 - 0 Original Alignment GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa Alignment from CESAR GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa Alignment from Spaln_aa2Genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa Alignment from Spaln_nt2Genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa Alignment from Pairagon GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa Alignment from Exonerate_protein2genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa Alignment from Exonerate_coding2genome GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa Alignment from GeneWise GAAACACTGACAGCACAGCTGGCAGAGAAAAATAGTGAGCTTCAGAAGTGGAGAGAAGAGCGTGACCAGCTGGTCACAGCTGTAGAGACACAGATGAAGGCTCTGCTCTCCAGCTGCAAGCACAAGGATGAAGAAATCCAGGAACTAAGAAAGGCTGCAGCAAAGAGCACCGGGACA tatatgtataattatataatagttccaacttgccccaatgtctctcctagGAGACACTAACGACGCAGTTGGAAGAGAAAAACAGTGAGTTACAAAAGTGGAGAGAAGAGCATGACCAACTAGTCACAGCTGTAGCTACACAGATGAAGGTTCTGCTCTCTAGCTGCAAGCACAAAGATGAAAAAATTAAGGAACTGAGAAAGGCTGCAGCAAAGACCACTGGGACCgtaagtaggctctggtccactacctttcaagaccaatcccctgaaaggaa #### Klc2_ID857_9 --> 2 - 0 Original Alignment gaGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaggctgcgaaacttgtgctgttggcactctcttccattcctttccaggaGAGAATAAACCCATTTGGATGCATGCAGAGGAGCGGGAGGAGAGCAAGgtaagtagtcaagagcagcagtcaggtgcaaggcagtcttgaggctggga Alignment from CESAR gaGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaggctgcgaaacttgtgctgttggcactctcttccattcctttccaggaGAGAATAAACCCATTTGGATGCATGCAGAGGAGCGGGAGGAGAGCAAGgtaagtagtcaagagcagcagtcaggtgcaaggcagtcttgaggctggga Alignment from Spaln_aa2Genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaggctgcgaaacttgtgctgttggcactctcttccattcctttccagGAGAGAATAAACCCATTTGGATGCATGCAGAGGAGCGGGAGGAGAGCAAGgtaagtagtcaagagcagcagtcaggtgcaaggcagtcttgaggctggga Alignment from Spaln_nt2Genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaggctgcgaaacttgtgctgttggcactctcttccattcctttccagGAGAGAATAAACCCATTTGGATGCATGCAGAGGAGCGGGAGGAGAGCAAGgtaagtagtcaagagcagcagtcaggtgcaaggcagtcttgaggctggga Alignment from Pairagon GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaggctgcgaaacttgtgctgttggcactctcttccattcctttccagGAGAGAATAAACCCATTTGGATGCATGCAGAGGAGCGGGAGGAGAGCAAGgtaagtagtcaagagcagcagtcaggtgcaaggcagtcttgaggctggga Alignment from Exonerate_protein2genome GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaggctgcgaaacttgtgctgttggcactctcttccattcctttccagGAGAGAATAAACCCATTTGGATGCATGCAGAGGAGCGGGAGGAGAGCAAGgtaagtagtcaagagcagcagtcaggtgcaaggcagtcttgaggctggga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGAGAACAAGCCCATCTGGATGCACGCAGAGGAGCGCGAGGAGAGCAAG acaaggctgcgaaacttgtgctgttggcactctcttccattcctttccagGAGAGAATAAACCCATTTGGATGCATGCAGAGGAGCGGGAGGAGAGCAAGgtaagtagtcaagagcagcagtcaggtgcaaggcagtcttgaggctggga #### Klc2_ID858_8 --> 0 - 1 Original Alignment GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg aaatgttttcttctgagtaatgtctgtccttcaccctgacctctttttagCCCTCTTGCTACTTGAAACAGGGCAAATACCATGATGCAGAGACCCTGTATAAGGAGATCTTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATggtaagttctccagaatgtaaccgtacctctgagcctgctttagccaatac Alignment from CESAR GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg aaatgttttcttctgagtaatgtctgtccttcaccctgacctctttttagCCCTCTTGCTACTTGAAACAGGGCAAATACCATGATGCAGAGACCCTGTATAAGGAGATCTTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATggtaagttctccagaatgtaaccgtacctctgagcctgctttagccaatac Alignment from Spaln_aa2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG aaatgttttcttctgagtaatgtctgtccttcaccctgacctctttttagCCCTCTTGCTACTTGAAACAGGGCAAATACCATGATGCAGAGACCCTGTATAAGGAGATCTTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagttctccagaatgtaaccgtacctctgagcctgctttagccaatac Alignment from Spaln_nt2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG aaatgttttcttctgagtaatgtctgtccttcaccctgacctctttttagCCCTCTTGCTACTTGAAACAGGGCAAATACCATGATGCAGAGACCCTGTATAAGGAGATCTTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagttctccagaatgtaaccgtacctctgagcctgctttagccaatac Alignment from Pairagon GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG aaatgttttcttctgagtaatgtctgtccttcaccctgacctctttttagCCCTCTTGCTACTTGAAACAGGGCAAATACCATGATGCAGAGACCCTGTATAAGGAGATCTTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagttctccagaatgtaaccgtacctctgagcctgctttagccaatac Alignment from Exonerate_protein2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG aaatgttttcttctgagtaatgtctgtccttcaccctgacctctttttagCCCTCTTGCTACTTGAAACAGGGCAAATACCATGATGCAGAGACCCTGTATAAGGAGATCTTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagttctccagaatgtaaccgtacctctgagcctgctttagccaatac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG aaatgttttcttctgagtaatgtctgtccttcaccctgacctctttttagCCCTCTTGCTACTTGAAACAGGGCAAATACCATGATGCAGAGACCCTGTATAAGGAGATCTTAACCTGTGCACACGAAAAGAAATGTGGCTTAGTCAATGgtaagttctccagaatgtaaccgtacctctgagcctgctttagccaatac #### Klc2_ID862_4 --> 2 - 2 Original Alignment ccCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATcg atgccattagaactctgaaaatgagggatagctcatattatcatttacagccCCGAGCCCTGGAGGTGGAGAAGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGAACTCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCCAT---GAGGTAGCCGTCCCATTGTGCAAGAAGGCACTCGAAGACTTGGAGAAGACTTCAGGCCATGACCACCATGATGTAGCCACTATACTGAATATCCTAGAACTAGTTTATcggtaagggactcccagctctacggtacagtggcagtctcattttcatgtat Alignment from CESAR ccCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATcg atgccattagaactctgaaaatgagggatagctcatattatcatttacagccCCGAGCCCTGGAGGTGGAGAAGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGAACTCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGC---CATGAGGTAGCCGTCCCATTGTGCAAGAAGGCACTCGAAGACTTGGAGAAGACTTCAGGCCATGACCACCATGATGTAGCCACTATACTGAATATCCTAGAACTAGTTTATcggtaagggactcccagctctacggtacagtggcagtctcattttcatgtat Alignment from Spaln_aa2Genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG atgccattagaactctgaaaatgagggatagctcatattatcatttacagCCCCGAGCCCTGGAGGTGGAGAAGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGAACTCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGC---CATGAGGTAGCCGTCCCATTGTGCAAGAAGGCACTCGAAGACTTGGAGAAGACTTCAGGCCATGACCACCATGATGTAGCCACTATACTGAATATCCTAGAACTAGTTTATCGgtaagggactcccagctctacggtacagtggcagtctcattttcatgtat Alignment from Spaln_nt2Genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG atgccattagaactctgaaaatgagggatagctcatattatcatttacagCCCCGAGCCCTGGAGGTGGAGAAGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGAACTCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCC---ATGAGGTAGCCGTCCCATTGTGCAAGAAGGCACTCGAAGACTTGGAGAAGACTTCAGGCCATGACCACCATGATGTAGCCACTATACTGAATATCCTAGAACTAGTTTATCGgtaagggactcccagctctacggtacagtggcagtctcattttcatgtat Alignment from Pairagon CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG atgccattagaactctgaaaatgagggatagctcatattatcatttacagCCCCGAGCCCTGGAGGTGGAGAAGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGAACTCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGCC---ATGAGGTAGCCGTCCCATTGTGCAAGAAGGCACTCGAAGACTTGGAGAAGACTTCAGGCCATGACCACCATGATGTAGCCACTATACTGAATATCCTAGAACTAGTTTATCGgtaagggactcccagctctacggtacagtggcagtctcattttcatgtat Alignment from Exonerate_protein2genome CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG atgccattagaactctgaaaatgagggatagctcatattatcatttacagCCCCGAGCCCTGGAGGTGGAGAAGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGAACTCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGC---CATGAGGTAGCCGTCCCATTGTGCAAGAAGGCACTCGAAGACTTGGAGAAGACTTCAGGCCATGACCACCATGATGTAGCCACTATACTGAATATCCTAGAACTAGTTTATCGgtaagggactcccagctctacggtacagtggcagtctcattttcatgtat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCCCCAGCCCTGGAGGAGGAGATGTAGCTGCACAGCATGGGGGCTATGAGATCCCAGCACGGCTACGGACCCTCCACAACCTGGTAATCCAGTATGCTTCACAAGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCACTGGAAGATTTGGAGAAGACATCAGGCCATGACCACCCTGATGTGGCCACCATGCTGAACATCCTGGCACTGGTTTATCG atgccattagaactctgaaaatgagggatagctcatattatcatttacagCCCCGAGCCCTGGAGGTGGAGAAGTAGCTGCCCAGCATGGAGGCTATGAGATTCCAGCACGGCTACGAACTCTCCACAATTTAGTGATCCAGTATGGATCTCAAGGC---CATGAGGTAGCCGTCCCATTGTGCAAGAAGGCACTCGAAGACTTGGAGAAGACTTCAGGCCATGACCACCATGATGTAGCCACTATACTGAATATCCTAGAACTAGTTTATCGgtaagggactcccagctctacggtacagtggcagtctcattttcatgtat #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccctctgccgcctactacccttctgcttgtgcccagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCGggtcagtagggggaattaactatggcaggtagctaggagtttggagaggat Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccctctgccgcctactacccttctgcttgtgcccagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCGggtcagtagggggaattaactatggcaggtagctaggagtttggagaggat Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccctctgccgcctactacccttctgcttgtgcccagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCGGgtcagtagggggaattaactatggcaggtagctaggagtttggagaggat Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccctctgccgcctactacccttctgcttgtgcccagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCGGgtcagtagggggaattaactatggcaggtagctaggagtttggagaggat Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccctctgccgcctactacccttctgcttgtgcccagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCGGgtcagtagggggaattaactatggcaggtagctaggagtttggagaggat Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccctctgccgcctactacccttctgcttgtGCCCAGAAGGAGAAGGTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCGGgtcagtagggggaattaactatggcaggtagctaggagtttggagaggat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccctctgccgcctactacccttctgcttgtgcccagAAGGAGAAG------GTCCCCAAAGACTCCCTTGATGACCTGTTTCCCAATGAAGATGAACAGAGATCGGgtcagtagggggaattaactatggcaggtagctaggagtttggagaggat #### Lcor_ID8184_2 --> 2 - 2 Original Alignment acGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACgg agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagatGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATgggtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc Alignment from CESAR acGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACgg agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagatGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATgggtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc Alignment from Spaln_aa2Genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagATGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc Alignment from Spaln_nt2Genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagATGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc Alignment from Pairagon ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagATGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc Alignment from Exonerate_protein2genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagATGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc Alignment from Exonerate_coding2genome ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagATGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc Alignment from GeneWise ACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTAGCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGG agttcaggcaaaaaccctcaggcagttgcacattgaatttatattctcagATGGTGTATTGGACCTATCTACAAAGAAAAGTCCTTGTGCTAGCAGCACTTCTTTGAGCCATTCTCCAGGTTGCTCAAGCACTCAAGGAAATGGgtgagtaaatcccccatgtatggagcttgattgattatccttaaaatccc #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Spaln_nt2Genome ACGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacAGGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgaaaatacttcctgtgtacccacagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGTTGTGGGTTTTCAAATACAGCTATTAACTACTTTCGGgtcggcgccagatgaccatactagtaattagactcttctttccagtagag #### Ldb1_ID9698_2 --> 2 - 2 Original Alignment gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg gtgtacctagctattttgttacacattatttaacttgtttttcttctcaggtTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGgggtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac Alignment from CESAR gtTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGgg gtgtacctagctattttgttacacattatttaacttgtttttcttctcaggtTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGgggtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac Alignment from Spaln_aa2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gtgtacctagctattttgttacacattatttaacttgtttttcttctcagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGGGgtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac Alignment from Spaln_nt2Genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gtgtacctagctattttgttacacattatttaacttgtttttcttctcagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGGGgtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac Alignment from Pairagon GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gtgtacctagctattttgttacacattatttaacttgtttttcttctcagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGGGgtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac Alignment from Exonerate_protein2genome GTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gtgtacctagctattttgttacacattatttaacttgtttttcttctcagGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGGGgtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac Alignment from Exonerate_coding2genome GGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG gtgtacctagctattttgttacacattatttaacttgtttttcttctcaGGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGGGgtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac Alignment from GeneWise TCAGTGGGCTGTGCCTGTCCTGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCGAACGGCAACGCCTTCCCTCCCTTCCACCCCGGCACCATGCTGGATCGGGATGTGGG ttacacattatttaacttgtttttcttc------------------TCAGGTTGCTCCTCGAAGTCATTTGAGCTGTATTCCCCAAAAGAATCTGCAAATGGCAACGCCTTTCCTCCTGTTCATCCAGGAACCATGCTGGATAGAGATGTGGGgtaagaccttatttccttgcccacctgcggaatgtgggtcacagtagaac #### Lgi1_ID7582_6 --> 1 - 1 Original Alignment gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagaGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTggtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat Alignment from CESAR gGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAg acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagaGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTggtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat Alignment from Spaln_aa2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTGgtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat Alignment from Spaln_nt2Genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTGgtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat Alignment from Pairagon GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTGgtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat Alignment from Exonerate_protein2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTGgtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat Alignment from Exonerate_coding2genome GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTGgtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat Alignment from GeneWise GGACCTAAGAGGGAACGCATTTAATTGTGACTGTAAGTTGAAGTGGCTGGTGGAATGGCTCGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCGGAATATAAGAAACGGAAAATCAATAGCCTCTCCCCCAAGGATTTTGACTGTATCATTACAG acttgcttgatacacatgtcctgagtaaacttctgtatctaactccacagAGACCTAAGAGGCAATGCGTTTACTTGTGATTGTAAGTTAAAGTGGCTGGTGGAATGGCTTGGCCATACCAATGCAACTGTGGAAGACATCTACTGTGAAGGCCCACCAGAATATAAGAAAAGGAAAATCAATAGCCTTTCCCCTAAGGATTTTGGCTGTATAATTACTGgtgcgttgctgaaaatcatcttatagtgggaaactaataccagtgtgcat #### Lipa_ID6937_6 --> 0 - 0 Original Alignment GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat Alignment from CESAR GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat Alignment from Spaln_aa2Genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat Alignment from Spaln_nt2Genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat Alignment from Pairagon GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat Alignment from Exonerate_protein2genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat Alignment from Exonerate_coding2genome GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat Alignment from GeneWise GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAAGTGGCTGAGCATTCACGTTTGCACCCACGTCATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATG cgatgtcaaccagtctgtagattgcctttgttgcctttttttttaattagGATATGTTCGGACAGAAGCAAGTTCTACCTCAGAGTGCAATGCTGAAGTGGCTAAGCATTCATGTTTGTACCCACACCCTCATGAAGGAGCTTTGTGCCAATGTTTTCTTCTTGTTATGTGGCTTCAATGAGAAAAATCTAAATATGgtgagtagggaaaacctgcataaacatccctgcttgcatctgactgatat #### Lipa_ID6939_4 --> 1 - 1 Original Alignment tTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAg cactaaatccatagaagattggtcactttaattcattgtctaatttaaagtTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAggtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa Alignment from CESAR tTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAg cactaaatccatagaagattggtcactttaattcattgtctaatttaaagtTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAggtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa Alignment from Spaln_aa2Genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG cactaaatccatagaagattggtcactttaattcattgtctaatttaaagTTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAGgtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa Alignment from Spaln_nt2Genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG cactaaatccatagaagattggtcactttaattcattgtctaatttaaagTTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAGgtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa Alignment from Pairagon TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG cactaaatccatagaagattggtcactttaattcattgtctaatttaaagTTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAGgtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa Alignment from Exonerate_protein2genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG cactaaatccatagaagattggtcactttaattcattgtctaatttaaagTTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAGgtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa Alignment from Exonerate_coding2genome TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG cactaaatccatagaagattggtcactttaattcattgtctaatttaaagTTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAGgtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa Alignment from GeneWise TTTTGATGAGATGGCAAAATATGACCTACCTGCTTCAATTAACTACATTTTGAATAAAACTGGCCAAGAACAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAG cactaaatccatagaagattggtcactttaattcattgtctaatttaaagTTTTGATGAGATGGCGAAATATGACTTACCTGCCTCAATTAACTACATTTTAAATAAAACTGGCCGAGAGCAAATCTATTATGTGGGTCATTCTCAAGGCTGCACCATAGgtgagtttgggccagattttaaaccaaatgtatcatctctcttgtcacaa #### Lipf_ID6847_3 --> 2 - 2 Original Alignment gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtccaggggatcaatttccaacactgaccctcctttatcctgcaggtAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTaggtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa Alignment from CESAR gcAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCag acccagtccaggggatcaatttccaacactgaccctcctttatcctgcaggtAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTaggtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa Alignment from Spaln_aa2Genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaggggatcaatttccaacactgaccctcctttatcctgcagGTAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa Alignment from Spaln_nt2Genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaggggatcaatttccaacactgaccctcctttatcctgcagGTAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa Alignment from Pairagon GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaggggatcaatttccaacactgaccctcctttatcctgcagGTAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa Alignment from Exonerate_protein2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaggggatcaatttccaacactgaccctcctttatcctgcagGTAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa Alignment from Exonerate_coding2genome GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaggggatcaatttccaacactgaccctcctttatcctgcagGTAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa Alignment from GeneWise GCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAACAACAGCCTGGCCTTCATTCTAGCAGATGCTGGCTATGATGTGTGGCTGGGGAACAGTCGAGGGAATACATGGTCCCGGAAAAATGTATACTATTCACCAGACTCAGTTGAATTCTGGGCTTTCAG acccagtccaggggatcaatttccaacactgaccctcctttatcctgcagGTAAGAGATCTGTGGCATACCTGCAACATGGTCTGATTGCATCAGCTACAAATTGGATCACAAATCTACCAAACAACAGCCTGGCTTTCATCTTAGCAGATGCAGGCTATGATGTATGGCTAGGGAACAGCCGACGTAATACCTGGTCTAGGAAAAATGTATACTATTCACCAGATCCAGTTGAGTTCTGGGCCTTTAGgtgagaaatgcagagaatggatatattgcaagaggaaaattcaacaacaa #### Lipk_ID6858_2 --> 0 - 1 Original Alignment AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAg atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGggtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc Alignment from CESAR AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAg atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGggtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc Alignment from Spaln_aa2Genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGGgtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc Alignment from Spaln_nt2Genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGGgtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc Alignment from Pairagon AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGGgtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc Alignment from Exonerate_protein2genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGGgtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc Alignment from Exonerate_coding2genome AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGGgtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc Alignment from GeneWise AGTGAACTTATTTCTTACTGGGGCTATCCTTATGAAAAGCATGATGTTATAACAGAGGATGGCTACATCCTTGGAACTTACCGGATTCCTCATGGGAAAGGATGCTCAAGGAAAACAG atgcacataaaaagcaacggcaacctggtaaaatttattttgtttttcagAGTGAACTCATTTCATACTGGGGATACCCCTATGAAAAGCATGATGTGATTGCAGAGGATGGTTACATCCTTGGAACTTACCGTATTCCTCATGGTAAAGGCTGCTCAAGGAAAATGGgtgagttgtgctctatcttgatttgaagagcaagatgtataaggccattc #### Lipk_ID6860_4 --> 1 - 1 Original Alignment cTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAg gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagcTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAggtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca Alignment from CESAR cTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAg gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagcTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAggtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca Alignment from Spaln_aa2Genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagCTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAGgtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca Alignment from Spaln_nt2Genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagCTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAGgtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca Alignment from Pairagon CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagCTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAGgtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca Alignment from Exonerate_protein2genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagCTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAGgtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca Alignment from Exonerate_coding2genome CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagCTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAGgtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca Alignment from GeneWise CTGGGACGAGATGGCGAAATATGATCTTCCAGCTACAGTCAATCTGATCTTAGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCGCAGGGCACCACCATAG gctacccactatatcttctctggaggcgtgtgctgcctttgaatctgaagCTGGGACGAGATGGCAAAATATGATCTTCCAGCTACAGTTAATCTGATTTTGGAGAAAAGTGGACAAAAGCAACTCTTCTATGTGGGCCACTCACAGGGTACCACCATAGgtaagagaggcacatgatgaacagttgtttagtgtcatccacatgctcca #### Lipk_ID6861_5 --> 2 - 0 Original Alignment cgTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagcaTTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca Alignment from CESAR cgTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagcaTTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca Alignment from Spaln_aa2Genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagCATTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca Alignment from Spaln_nt2Genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagCATTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca Alignment from Pairagon CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagCATTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca Alignment from Exonerate_protein2genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagCATTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca Alignment from Exonerate_coding2genome CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagCATTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca Alignment from GeneWise CGTTCATAGCATTCTCTACGAATCCAGAGCTGGCTAAAAAGATTAGGCTGTTTTTCGCACTAGCTCCAGTGGCCACAGTAAAATACACTCGAAGCCCAATGAAAAAATTAACCACCCTTTCCAGGAAAGCTGTCAAG caaagaatgactaaaagagtatgtagatattaatacattttttcttctagCATTCGTAGCATTCTCCACAAATCTAGAGCTGGCTAAGAAGATTAGCCTATTTTTTGCACTAGCAGCAGTGGCCACAGTGAAATACACCCGAAGCCCAATGAAAAAGGCAACTACCCCTTCCAGAAAAGCTGTTAAAgtgagggaatccctagaaaggatgaggaactgtaaatcaccattcttcca #### Lipn_ID6873_5 --> 2 - 0 Original Alignment gaTTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagggTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata Alignment from CESAR gaTTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagggTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata Alignment from Spaln_aa2Genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagGGTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata Alignment from Spaln_nt2Genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagGGTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata Alignment from Pairagon GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagGGTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata Alignment from Exonerate_protein2genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagGGTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata Alignment from Exonerate_coding2genome GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagGGTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata Alignment from GeneWise GATTTGTAGCCTTTTCCACCATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAG tcaataggttactgggattagctatgcatatcaacgttaatgttttgtagGGTTTGTAGCATTTTCTACTATGCCTGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGCCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACTAATCTGTTTCTACTTCCAAAGTCCATCATCAAGgtaagtccttctcagcttttcaattggtgacaagagctatagttggcata #### Lipo1_ID6825_8 --> 0 - 0 Original Alignment GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from CESAR GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Spaln_aa2Genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Spaln_nt2Genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Pairagon GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Exonerate_protein2genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Exonerate_coding2genome GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from GeneWise GTAGGAAGAAGTGGTATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt #### Lrp5_ID106_18 --> 2 - 1 Original Alignment agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagagCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCAAACTGTGATggtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat Alignment from CESAR agCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATg acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagagCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCAAACTGTGATggtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat Alignment from Spaln_aa2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagAGCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCAAACTGTGATGgtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat Alignment from Spaln_nt2Genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagAGCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCC------TGCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCAAACTGTGATGgtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat Alignment from Pairagon AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagAGCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCC------TGCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGT---------------------TGGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCAAACTGTGATGgtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat Alignment from Exonerate_protein2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGG acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagAGCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGTTGgtgaggcagactgccaggaccgctctgatgatgcaaactgtgatggtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat Alignment from Exonerate_coding2genome AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGG acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagAGCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGTTGgtgaggcagactgccaggaccgctctgatgatgcaaactgtgatggtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat Alignment from GeneWise AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTACCACTGGTGAGATCGACTGCATCCCCGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAAGAAGGCTGCCCAGTGTGCTCCGCCTCTCAGTTCCCCTGCGCTCGAGGCCAGTGTGTGGACCTGCGGTTACGCTGCGACGGTGAGGCCGACTGCCAGGATCGCTCTGATGAAGCTAACTGCGATG acatgcgcatgtctcacacaccatcttgtctctctttcccctaactctagAGCCTCCCACCTGCTCCCCTGATCAGTTTGCATGTACTACTGGACAAATCGAATGCATCCCTGGAGCTTGGCACTGTGATAGCTTCCCT------GCCGACCAGAGTGTTGAAGAAGGCTGTCCTGTATGTTCAGCGTCTCAGTTCCCGTGTGCTCGAGGACAGTGTGTT---------------------GGTGAGGCAGACTGCCAGGACCGCTCTGATGATGCAAACTGTGATGgtaaagctctgcctgatctgcagagtcctccaggtcacatgggtagccat #### Lrp5_ID108_16 --> 2 - 1 Original Alignment ggGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCt cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagggGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTtgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt Alignment from CESAR ggGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCt cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagggGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTtgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt Alignment from Spaln_aa2Genome GGGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCT cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagGGGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTTgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt Alignment from Spaln_nt2Genome GGGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCT cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagGGGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTTgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt Alignment from Pairagon GGGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCT cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagGGGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTTgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt Alignment from Exonerate_protein2genome GGGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCT cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagGGGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTTgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt Alignment from Exonerate_coding2genome GGGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCT cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagGGGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTTgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt Alignment from GeneWise GGGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTACAGCCAGTAGGTCTGACAGTGCTGGGCAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATCGAGCGCGTGGAGAAGACCACTGGGGACAAGCGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCCGTGGAGGAAGTCAGCCTGGAGGAGTTCT cgcactaaggggtcagcattgtactatccaaaggctgagttcatttctagGGGCCAACCACCTCACTTTGGAATATGGCAACATTCTCCAGCCAGTTGGTCTCACAGTGTTGGGCAGGCACCTCTACTGGGTTGATCGCCAGCAGCAGATGATTGAGCACGTGGAGAAGACAACTGGTGACAAACGCGCTAGAGTTCAAGGGCATGTCACACATCTTACAGGTATTCATGCTGTGGCAGAAGTGAGTCTCAAGGAGTTTTgtaagccctgtgcctgtggtggacactgtgagtctcaattgtgcggactt #### Lrp5_ID117_7 --> 1 - 0 Original Alignment cCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagcTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc Alignment from CESAR cCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagcTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc Alignment from Spaln_aa2Genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc Alignment from Spaln_nt2Genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc Alignment from Pairagon CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc Alignment from Exonerate_protein2genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc Alignment from Exonerate_coding2genome CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc Alignment from GeneWise CCTCATGTACTGGACAGACTGGGGGGAGAACCCCAAAATCGAATGCGCCAACCTAGATGGGAGAGATCGGCATGTCCTGGTGAACACCTCCCTTGGGTGGCCCAACGGACTGGCCCTGGACCTGCAGGAGGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATCGAG ctggttaggcctgcacagggtacttccctcagagatctttttgttttcagCTTCATGTACTGGTCAGACTGGGGGGAAAACCCCAAGATTGAATGTGCCAATTTGGATGGAAGGGACCGGCGTGTCTTAGTGAACACTTCCCTTGGATGGCCGAATGGACTGGCCCTGGACCTACAAGAAGGCAAGCTGTACTGGGGGGATGCCAAAACTGATAAAATTGAGgtaagcggggcatcagcacaacatagcaacatcatcgaggctcagatttc #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagatACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGggtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from CESAR atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagatACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGggtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Pairagon ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from GeneWise ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGggtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagtaaggtcgctgctccacactgactaacatgtcattctctccagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTTTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACGGgtgagtttgtagagccttgggaatgacaggacaaatttgtgtgccgggcc #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGggtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGggtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctttcagCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from Exonerate_coding2genome ATCCACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgaggcaattctctcctttcctTTCAGCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta Alignment from GeneWise -----------------GATCCACCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG tatgacagctcacagtaccattatgagGCAATTCTCTCCTTTCCTTTCAGCCAGTGAGTGAGGAGCGATCTGTGCAACAGAGCCATCCCACTACCATTACCTCACCTTCTCGGCCTTTCCTGGgtaaactggtgggaggggatgggcaaatcataccggcaggggtaagccta #### Ltbp3_ID1266_18 --> 2 - 1 Original Alignment acATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAg cggctatatgggggcatcccataagcctgactcctctgtctacctcacagacATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGggtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc Alignment from CESAR acATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAg cggctatatgggggcatcccataagcctgactcctctgtctacctcacagacATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGggtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc Alignment from Spaln_aa2Genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG cggctatatgggggcatcccataagcctgactcctctgtctacctcacagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGGgtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc Alignment from Spaln_nt2Genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG cggctatatgggggcatcccataagcctgactcctctgtctacctcacagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGGgtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc Alignment from Pairagon ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG cggctatatgggggcatcccataagcctgactcctctgtctacctcacagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGGgtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc Alignment from Exonerate_protein2genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG cggctatatgggggcatcccataagcctgactcctctgtctacctcacagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGGgtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc Alignment from Exonerate_coding2genome ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG cggctatatgggggcatcccataagcctgactcctctgtctacctcacagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGGgtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc Alignment from GeneWise ACATTGATGAATGTGACTTCCCTGCGGCCTGCATCGGGGGTGACTGCATCAATACCAATGGTTCCTACAGATGTCTCTGTCCCCAGGGTCATCGGTTGGTGGGCGGTAGGAAGTGCCAAG cggctatatgggggcatcccataagcctgactcctctgtctacctcacagACATTGATGAATGTGATTTCCCTGCTGCTTGCATTGGAGGTGATTGCATCAATACAAATGGTTCCTACAGATGTCTCTGTCCCCAGGGGCATCGGTTGGTTGGTGGCAGGAAGTGCCAGGgtgaggagttggccagggactttgaaaggtccaactctgaaagtcaaagc #### Ltbp3_ID1267_19 --> 2 - 1 Original Alignment atATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGg actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagatATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGggtatgtatcctcactgctctgccacctgccagttgctggagctactgctc Alignment from CESAR atATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGg actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagatATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGggtatgtatcctcactgctctgccacctgccagttgctggagctactgctc Alignment from Spaln_aa2Genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGGgtatgtatcctcactgctctgccacctgccagttgctggagctactgctc Alignment from Spaln_nt2Genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGGgtatgtatcctcactgctctgccacctgccagttgctggagctactgctc Alignment from Pairagon ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGGgtatgtatcctcactgctctgccacctgccagttgctggagctactgctc Alignment from Exonerate_protein2genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGGgtatgtatcctcactgctctgccacctgccagttgctggagctactgctc Alignment from Exonerate_coding2genome ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGGgtatgtatcctcactgctctgccacctgccagttgctggagctactgctc Alignment from GeneWise ATATAGATGAGTGCAGCCAGGACCCAGGCCTGTGCCTGCCCCACGGGGCCTGCGAGAACCTCCAGGGCTCCTATGTCTGTGTCTGTGATGAGGGTTTCACACTCACCCAGGACCAGCATGGGTGTGAGG actgtctgtgtctaaggggctatcacacgtcgtttccccttctgctttagATATTGATGAGTGCAGTCAGGACCCAGGCCTGTGCTTGCCTCATGGGGCTTGTGAGAACCTTCAGGGGTCTTATGTTCTGGTCTGGGATGAGGGTTTCACCCTCACCCAAGACCAGCATGGTTGTGAGGgtatgtatcctcactgctctgccacctgccagttgctggagctactgctc #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagcgGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGggtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTg agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagcgGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGggtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagCGGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGGgtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagCGGAATTTCATAG---GTGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGGgtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagCGGAATTTCATAG---GTGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGGgtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagCGGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGGgtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagCGGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGGgtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGAACTATGGCATTCCTGCCCACCGTG agtggcatgggagtataagtgaacccacctttctctggtactgtgtttagCGGAATTTCATAGG---TGTCCTGACGGTAAAGGCTATACTCAAGACAATAACATTGTGAATTATGGCATTCCTACCCACCGGGgtaaggaagccagtttagtttaagggttcctgatgagaatgccattctac #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa #### Map3k11_ID1207_8 --> 1 - 1 Original Alignment gAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACg tggtattttgctttttgggggctgacccactgttgtgtttcctccagcaggCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATggtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca Alignment from CESAR gAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACg tggtattttgctttttgggggctgacccactgttgtgtttcctccagcaggCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATggtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca Alignment from Spaln_aa2Genome GAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACG tggtattttgctttttgggggctgacccactgttgtgtttcctccagcagGCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATGgtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca Alignment from Spaln_nt2Genome GAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACG tggtattttgctttttgggggctgacccactgttgtgtttcctccagcagGCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATGgtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca Alignment from Pairagon GAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACG tggtattttgctttttgggggctgacccactgttgtgtttcctccagcagGCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATGgtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca Alignment from Exonerate_protein2genome GAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACG tggtattttgctttttgggggctgacccactgttgtgtttcctccagcagGCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATGgtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca Alignment from Exonerate_coding2genome GAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACG tggtattttgctttttgggggctgacccactgttgtgtttcctccagcagGCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATGgtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca Alignment from GeneWise -AGGAGACGGTCCCGCATGGATGAAGCCACGTGGTACCTAGATTCAGACGACTCGTCCCCATTAGGGTCCCCTAGTACTCCCCCGGCACTCAACG tggtattttgctttttgggggctgacccactgttgtgtttcctccagCAGGCGACGGTCCCGCATGGATGAAGCTGCATGGTATCTAGATTCAGACGATTCTTCCCCATTAGGGTCACCTAGTACTCCACAAGGATTAAATGgtaagtctagcactctcatgtattgcttgtgcccaggctagggtgtaaca #### Map3k11_ID1208_9 --> 2 - 1 Original Alignment gtAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGC---AATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAG---AGCCCTCGACGGGAAGAGACACGTg gggtagatgagcctgccactgcattacctaatagtctttttattttttaggtAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCagtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa Alignment from CESAR gtAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGA---GGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGC---CCTCGACGGGAAGAGACACGTg gggtagatgagcctgccactgcattacctaatagtctttttattttttaggtAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCagtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa Alignment from Spaln_aa2Genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGC---AATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAG---AGCCCTCGACGGGAAGAGACACGTG gggtagatgagcctgccactgcattacctaatagtctttttattttttagGTAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCAgtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa Alignment from Spaln_nt2Genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGC---AATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAGCC---CTCGACGGGAAGAGACACGTG gggtagatgagcctgccactgcattacctaatagtctttttattttttagGTAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCAgtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa Alignment from Pairagon GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGC---GAGGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAGAG---CCCTCGACGGGAAGAGACACGTG gggtagatgagcctgccactgcattacctaatagtctttttattttttagGTAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCAgtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa Alignment from Exonerate_protein2genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGA---GGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAG---AGCCCTCGACGGGAAGAGACACGTG gggtagatgagcctgccactgcattacctaatagtctttttattttttagGTAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCAgtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa Alignment from Exonerate_coding2genome GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGA---GGCAATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAG---AGCCCTCGACGGGAAGAGACACGTG gggtagatgagcctgccactgcattacctaatagtctttttattttttagGTAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCAgtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa Alignment from GeneWise GTAATCCTCCAAGGCCTAGCCCCGAGCCAGAGGAGCCACGGAGGGCCGGGCCCACGGAGCGAGGC---AATAGCTCTGGGACGCCTAAACTGATCCAACGTGCATTGCTACGGGGGACCGCTCTGCTGGCTTCCCTAGGCCTTGGCCGAGATCTGCAACCTCCAGGAGGCCTGAGCCGTGAACGCGGGGAGTCCCCGACAGCACCACCCCCTGCACAGATGCCCTCACCCTGCCCACCTGAGCTGCCCTCCACCCCGCTCATCCGCCTCTCACAAACAACACCTGATGCCCATAGTTCACCCACTCCTGGACCCTTATTGCTAGACCTAGGTGTTCCCTCTGGCCAGCCATCAGCCAAG---AGCCCTCGACGGGAAGAGACACGTG gggtagatgagcctgccactgcattacctaatagtctttttattttttagGTAATCCCCCAAGGCCTAGCCCTGAGCCTGAGAAGCCATGGAAGGCTGGGCCTAGGGAGCAAGGGGGTAATAGCTCTGGCACACCTAAACTAATACAACGTGCATTACTACGAGGAACTGCTCTGCTGGCTTCCCTAGGCCTGGGGCGAGACCTGCAACCTCCAGGATCCCTAAGCTGTGAACATGGTGAGTCTCCAACAGCACCACCCCTTGCACAAATGCCTCCACCATGCCCACCTGAGCTTCGCTCAACCCCATTAATCCACCTCTCACAAACAATACCTGATGCCCATAGTTCACCCACTCCTGGACCCCTATTGCTAGAGTTGGGTGTTCCCTCTGGCCAGCCTTCAGCTAAGAGACATCCTCAACAGAAAGAGACTCGCAgtaagacagacagaggctgatgtggacaaaagaggttactttcttgccaa #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca Alignment from Exonerate_protein2genome tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacaggggatgacatcagctctcttcagcaggaaatcaccatccttcgtgaatgccgccaccccaatgttgtggcctacatcagcagctacctcaggtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG tatcattcaggcactgaacaatgcattgtccaaaccctccacctgcacagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtaatactgttcacaccttcacactcaggtgccatactcttaggtgttca #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG------ agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGGTAGGGgtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from CESAR GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Pairagon GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Exonerate_protein2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from Exonerate_coding2genome GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt Alignment from GeneWise GGGCTCCACCACCTGCATTCTCAGGGGAAAATTCACCGAGACATTAAG agtaccatatttccatgtggcttgacataaaatgaatttataatttgtagGGCCTCCATCACCTGCGTTCTAAGGGAAAAATTCACAGAGACATTAAGgtaggggtacatattcaagtgagtacatggtatgagggaaaggaaagcctagaagt #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcaggGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcaggGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Exonerate_protein2genome tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagggcgctgatgctcatgtcaaagagtagtttccagccacctaagctaagagataagacacgttggtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Exonerate_coding2genome tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagggcgctgatgctcatgtcaaagagtagtttccagccacctaagctaagagataagacacgttggtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Exonerate_protein2genome gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagcatcctttcacaacccagcatctccctccagcacttcttacccaactccttgataaggctagtgatccccatctaggtaccctctccccagaagacagtaagctaaaggtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAGAC gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAG--gtaagagcagttagggaactgggtttggcttggtggataggtggtgtc Alignment from GeneWise ---CCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gagattttgaaaaagtgatctggagggcaaccagttgccttcttccctagCATCCTTTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGATAAGGCTAGTGATCCCCATCTAGGTACCCTCTCCCCAGAAGACAGTAAGCTAAAGgtaagagcagttagggaactgggtttggcttggtggataggtggtgtcca #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGT------------------GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGGCTCCACACCAGAAGGAGACAGAC------AATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from CESAR ttCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGGCTCCACACCAGAAGGAGACAGACAATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGGCTCCACACCAGAAGGAGACAGACAATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAG-----ACA-------GATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGGCTCCACACCAGAAGGAGACAGACAATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Pairagon TTCACCAAGTGAAATTC------------------GGTGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGGCTCCACACCAGAAGGAGACAGA------CAATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Exonerate_protein2genome aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttcaccaagtggaattcgcagctccacaccagaaggaggctccacaccagaaggagacagacaatgatccagtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from Exonerate_coding2genome aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagttcaccaagtggaattcgcagctccacaccagaaggaggctccacaccagaaggagacagacaatgatccagtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga Alignment from GeneWise TTCACCAAGTGAAATTCGGTGCTCCTCGCCGGAAGGAGACA------------GATCCTCTCAATGAACCG aatctgattaggtatctgcagagggactgtccccatgttctgtgttgcagTTCACCAAGTGGAATTCGCAGCTCCACACCAGAAGGAGGCTCCACACCAGAAGGAGACAGACAATGATCCAgtaagttgccaactaatattggtgcagtgaggtatagggggggaggctga #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from CESAR TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Pairagon TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGAGC cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGCAAgtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGA cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAgtgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg #### Map4k2_ID1637_16 --> 1 - 2 Original Alignment gAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAag gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcaggAGCCTGTTGCAGTCGGTGCAGGAAGCTCTGGAGGACaagtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga Alignment from CESAR gAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAag gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcaggAGCCTGTTGCAGTCGGTGCAGGAAGCTCTGGAGGACaagtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga Alignment from Spaln_aa2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcagGAGCCTGTTGCAGTCGGTGCAGGAAGCTCTGGAGGACAAgtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga Alignment from Spaln_nt2Genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcagGAGCCTGTTGCAGTCGGTGCAGGAAGCTCTGGAGGACAAgtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga Alignment from Pairagon GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcagGAGCCTGTTGCAGTCGGTGCAGGAAGCTCTGGAGGACAAgtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga Alignment from Exonerate_protein2genome GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcagGAGCCTGTTGCAGTCGGTGCAGGAAGCTCTGGAGGACAAgtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga Alignment from Exonerate_coding2genome gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcaggagcctgttgcagtcggtgcaggaagctctggaggacaagtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga Alignment from GeneWise GAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAG gcaagcagaccctgttgatgcttgggacactccctccttctcatttgcagGAGCCTGTTGCAGTCGGTGCAGGAAGCTCTGGAGGACAAgtgttactttatcccttgatgagaggctgggaagtgccacacctggaaga #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAggtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAggtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---CCCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---CCCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Exonerate_coding2genome AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG CTACAGAACAACTTTTTATGAGACCGGGCTTGCCCTGTGTTGTCACCCAGGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG AACAACTTTTTATGAGACCGGGCTTG------CCCTGTGTTGTCACCCAGGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg GAGGATCGAATGGAAAAGgtaattcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAggtaatggatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from CESAR GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg GAGGATCGAATGGAAAAGgtaagtcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAggtaatggatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Spaln_aa2Genome GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtaattcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAGgtaatggatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Spaln_nt2Genome GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtaattcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAGgtaatggatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Pairagon GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtaattcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAGgtaatggatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Exonerate_protein2genome GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtaattcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAGgtaatggatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from Exonerate_coding2genome GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtaattcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAGgtaatggatggcagctgtagagccagcctggataacatgttcccaagggt Alignment from GeneWise GAGGACACAATGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG GAGGATCGAATGGAAAAGgtaattcttgtttccttggttctgaattttagCTGATTTCTCAGCGCTACTCATGGCTCTACTGTGTGAATAATGTATTGCTGGCACTCCCAGgtaatggatggcagctgtagagccagcctggataacatgttcccaagggt #### Map4k2_ID1645_24 --> 2 - 2 Original Alignment ggAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCag acatgttcccaagggttttctgggccattgtccccctcccctccctgtagggAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAaggttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa Alignment from CESAR ggAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCag acatgttcccaagggttttctgggccattgtccccctcccctccctgtagggAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAaggttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa Alignment from Spaln_aa2Genome GGAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggttttctgggccattgtccccctcccctccctgtagGGAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAAGgttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa Alignment from Spaln_nt2Genome GGAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggttttctgggccattgtccccctcccctccctgtagGGAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAAGgttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa Alignment from Pairagon GGAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggttttctgggccattgtccccctcccctccctgtagGGAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAAGgttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa Alignment from Exonerate_protein2genome GGAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggttttctgggccattgtccccctcccctccctgtagGGAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAAGgttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa Alignment from Exonerate_coding2genome GGAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggttttctgggccattgtccccctcccctccctgtagGGAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAAGgttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa Alignment from GeneWise GGAAATCCACACATATCTGGGCGCATGACCTCCCGGGCCTGTTTGAGCAGCGAAGGCTGCAGCACCAGGCACCCCTCTCCATCCCTACCAACCGCATCACTCAGCGCATCATCCCCAG acatgttcccaagggttttctgggccattgtccccctcccctccctgtagGGAAGTTCACACACATCTGGGCACATGATCTACCAGGTTTGTTTGAGCAGCGTAGACTACAGCATCAGGCACCTCTGTCAATCCCTACCAACTGCATTACCCAGCGCATTATACCAAGgttagtaggtctacagttctaaaggtctgagaatactacatggacatgaa #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagtgCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from CESAR ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagtgCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Pairagon TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCACTGCAGAAATTCCTGCTGCTGAAG gtgggggtgctgtgaagctggtcccacctgcctcctctcttctgctccagTGCACAATCCTTATACCAGCAGCACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTCCTGCTTTTAGAATGGTATGAGCCCCTGCAGAAATTTCTGCTGCTTAAGgtaagtgactggcggaccattaaggaggtggggacacaacggactgaaaa #### March5_ID7301_3 --> 2 - 0 Original Alignment gtCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacaggtCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt Alignment from CESAR gtCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacaggtCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt Alignment from Spaln_aa2Genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacagGTCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt Alignment from Spaln_nt2Genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacagGTCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt Alignment from Pairagon GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacagGTCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt Alignment from Exonerate_protein2genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacagGTCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt Alignment from Exonerate_coding2genome GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacagGTCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt Alignment from GeneWise GTCCAGTGGTTTATGTCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTGCAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAG catactagtgtatggccatcaagctatattttattgtcctttcttcacagGTCCAGTCGTTTATGTATTGGACCTGGCAGATAAGCTGATCTCTAAAGTCTGCCCATTTACTGCAGCAGGAATAATGGTTGGATCTATCTACTGGACAGCTGTAACCTATGGGGCTGTAACTGTGATGCAGgtaagacaacctggtgtctgctgtgaagatttatcatgtatatcagggtt #### March5_ID7302_4 --> 0 - 1 Original Alignment GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca Alignment from CESAR GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAg tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAggtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca Alignment from Spaln_aa2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACT------ tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTgtcatgctgatactaggaaaaatgattcgctgggaggaccatgtgcttagactatggcgtaaatacacaaataaactacagatcttgaacagtatatttccaggtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca Alignment from Spaln_nt2Genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTC tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCgctgggaggaccatgtgcttagactatggcgtaaatacacaaataaactacagatcttgaacagtatatttccaggtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca Alignment from Pairagon GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca Alignment from Exonerate_protein2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca Alignment from Exonerate_coding2genome GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca Alignment from GeneWise GTTGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCAAATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAG tatcataactcctggggtggtaatgcaattcatccggttatgttttgcagGTTGTAGGCCATAAAGAAGGGCTAGATGTTATGAAGCGAGCTGACCCTTTATTTCTTCTGACTGGACTTCCTACTATTCCTGTCATGCTGATACTAGGAAAAATGATTCGCTGGGAGGACCATGTGCTTAGACTATGGCGTAAATACACAAATAAACTACAGATCTTGAACAGTATATTTCCAGgtgagtcactgtgttattggcactcaaagcatacataggatcgatgctca #### Mark2_ID2113_8 --> 0 - 0 Original Alignment GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac Alignment from CESAR GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac Alignment from Spaln_aa2Genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac Alignment from Spaln_nt2Genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac Alignment from Pairagon GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac Alignment from Exonerate_protein2genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac Alignment from Exonerate_coding2genome GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac Alignment from GeneWise GCAGAAAACCTGCTCCTGGATGCTGATATGAACATCAAGATTGCAGACTTTGGCTTTAGCAACGAATTCACCTTTGGGAACAAGCTGGATACTTTCTGTGGCAGTCCTCCTTATGCTGCCCCAGAACTTTTCCAGGGCAAAAAGTATGATGGTCCTGAGGTGGATGTCTGGAGCCTGGGAGTCATCCTCTATACACTGGTCAGCGGATCCCTGCCTTTTGATGGACAGAACCTCAAG agcaattaagtgctaactgaacctgtatacttccatcttgtctctttcagTCAGAAAATCTGCTTTTGGATGCTGATATGAACATCAAGATTGCAGATTTTGGATTTAGCAACAAGTTCACTTTTGGGAATGTACTGGATACTTTTTGTGGCAGTCCTCCTTATGCTGCTCCAGAGTATTTCCAGGGTAAAAAGTATGACGGCCCTGAGGTGGATGTTCGGAGCCTTGGAGTCATCCTTTATACACTGGTCAGTGGATCTCTGCCTTTTGATGGACGGAATCTAATGgtgtgtgaaactgagcacacactgtcttctcttttaagcccttcttgaac #### Mgea5_ID9592_9 --> 2 - 0 Original Alignment gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcaggtAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa Alignment from CESAR gtAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcaggtAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa Alignment from Spaln_aa2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcagGTAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa Alignment from Spaln_nt2Genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcagGTAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa Alignment from Pairagon GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcagGTAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa Alignment from Exonerate_protein2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcagGTAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa Alignment from Exonerate_coding2genome GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcagGTAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa Alignment from GeneWise GTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAA tggatcatatatgttttatgctgttctcaccctgttgacgtgtttttcagGTAGGCAGGTTACACACAGTGGTGCTAAAACTAGTGTAGTAGATGGAACTCCCTTAGTGGCTGCACCCTCCTTAAATGCCACAACTGTAGTCACAACATTTTACCAGGGACCCATAATCAGCCAGGGAGCTGCTTTGAGTCGTGAACCTTCAGTTCTAAGCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTTGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAGGCTAAGATGGCAGAGGAGTTGAGACCAATGGATACAGACAAGGAGAGTATGGCTGAGTTGAAATCCCCAGAGATGGCCATGCAGGAAGACTGCATTCCTGATGTGGCTCCCATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTCGTACCAGGTCCAAACGAAAAGCCTCTTTACACTGCTGAACCTGTGACTCTGGAGGACTTACAATTACTTGCTGACCTGTTCTACCTTCCCTACGAGCGTGGGCCCAAAGGAGCACAAAAACTGCGGGAATTCCAGTGGCTTCGAGCAAACAGTAGTGTTGTCAGTGTGAACTGCAAAGGGAAAGACTCAGAAAAAgtgagaggatgtcatcttattattgttaactagagctatttttcctaaaa #### Mgea5_ID9594_7 --> 2 - 1 Original Alignment gtCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGa atttcataactagcccctttaataatggcaccttcctgtttttacttcaggtCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGagttagtgggaggttgttactgggggactttgcacttttgtccttcctagg Alignment from CESAR gtCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGa atttcataactagcccctttaataatggcaccttcctgtttttacttcaggtCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGagttagtgggaggttgttactgggggactttgcacttttgtccttcctagg Alignment from Spaln_aa2Genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA atttcataactagcccctttaataatggcaccttcctgtttttacttcagGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGAgttagtgggaggttgttactgggggactttgcacttttgtccttcctagg Alignment from Spaln_nt2Genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA atttcataactagcccctttaataatggcaccttcctgtttttacttcagGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGAgttagtgggaggttgttactgggggactttgcacttttgtccttcctagg Alignment from Pairagon GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA atttcataactagcccctttaataatggcaccttcctgtttttacttcagGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGAgttagtgggaggttgttactgggggactttgcacttttgtccttcctagg Alignment from Exonerate_protein2genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA atttcataactagcccctttaataatggcaccttcctgtttttacttcagGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGAgttagtgggaggttgttactgggggactttgcacttttgtccttcctagg Alignment from Exonerate_coding2genome GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA atttcataactagcccctttaataatggcaccttcctgtttttacttcagGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGAgttagtgggaggttgttactgggggactttgcacttttgtccttcctagg Alignment from GeneWise GTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGA atttcataactagcccctttaataatggcaccttcctgtttttacttcagGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCAATTGAAGAAGTTTCTAAAATCATTAAGAGAGCGCCAGTTATCTGGGATAATATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTTGGTCCTTATAAAGGAAGATCCACTGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCCAATTGTGAGTTTGAAGCTAACTATGTTGCCATACACACCCTTACCACTTGGTATAAGTCAAACATGAATGGAGTAAGGAAGGATGTGGTGATGAgttagtgggaggttgttactgggggactttgcacttttgtccttcctagg #### Mgea5_ID9597_4 --> 2 - 0 Original Alignment agCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagagCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga Alignment from CESAR agCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagagCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga Alignment from Spaln_aa2Genome AGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga Alignment from Spaln_nt2Genome AGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga Alignment from Pairagon AGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga Alignment from Exonerate_protein2genome AGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga Alignment from Exonerate_coding2genome AGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga Alignment from GeneWise AGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAG agtaagtgagagtgaagaaatgattatgagtgatgtgtggttttctttagAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATTTATGCTATCTCACCAGGACTAGATATCACTTTTTCTAACCCCAAAGAAGTATCAACACTGAAACGGAAATTGGACCAGgtatgccttttattatgtgatctcatatgtttgattgcttggagaaggga #### Mgea5_ID9599_2 --> 2 - 2 Original Alignment ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagggTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAaggtatgttccatgcaccacagcactacagcacactggagtaccaagagaat Alignment from CESAR ggTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAag ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagggTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAaggtatgttccatgcaccacagcactacagcacactggagtaccaagagaat Alignment from Spaln_aa2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtatgttccatgcaccacagcactacagcacactggagtaccaagagaat Alignment from Spaln_nt2Genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtatgttccatgcaccacagcactacagcacactggagtaccaagagaat Alignment from Pairagon GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtatgttccatgcaccacagcactacagcacactggagtaccaagagaat Alignment from Exonerate_protein2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtatgttccatgcaccacagcactacagcacactggagtaccaagagaat Alignment from Exonerate_coding2genome GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtatgttccatgcaccacagcactacagcacactggagtaccaagagaat Alignment from GeneWise GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAG ggggggatcccaccctcattttgagctataatcctccctccgtgcttcagGGTTTTATGGAAGACCTTGGGTTATGGAGCAGCGAAAAGAGCTCTTTAGAAGgtatgttccatgcaccacagcactacagcacactggagtaccaagagaat #### Minpp1_ID6698_4 --> 0 - 2 Original Alignment GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAag ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAaggtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag Alignment from CESAR GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAag ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAaggtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag Alignment from Spaln_aa2Genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag Alignment from Spaln_nt2Genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag Alignment from Pairagon GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag Alignment from Exonerate_protein2genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag Alignment from Exonerate_coding2genome GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag Alignment from GeneWise GTTCTGGAATACTTAAACGACCTGAAACAGTACTGGAAACGAAGCTATGGCTACACCATTAACAGCCGGTCCAGCTGCAACCTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAG ttatcaccaattggaacttatcagaattctcacccttgccctccctgcagGTTCTGGAATACCTAAATGACCTGAAACAGTACTGGAAACAAAGCTATGGCTACACTATTAACAGCCGGTCCAGCTGCAACTTATTTCAGGACATTTTTCTACACCTGGACAAAGCAGTGGAGCAGAAGCAAAGgtatgtgcagtctggaatagggtccttatcatcacattaccttgaggcag #### Mlana_ID6335_3 --> 0 - 0 Original Alignment GACAAA------AGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATT---CAAACATCAAGT------GGCTCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGgtaagaagtactagcccgcagttcagatgtacgaggactaagcctagaga Alignment from CESAR GACAAA------AGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATTCAA---ACATCA------AGTGGCTCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGgtaagaagtactagcccgcagttcagatgtacgaggactaagcctagaga Alignment from Spaln_aa2Genome GAC------AAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATTCAAACATCAAGTGGC---------TCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGgtaagaagtactagcccgcagttcagatgtacgaggactaagcctagaga Alignment from Spaln_nt2Genome GACAAAA------GGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATTC---AAACATCAAGTG------GCTCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGgtaagaagtactagcccgcagttcagatgtacgaggactaagcctagaga Alignment from Pairagon G------ACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATTCAAACATC---------AAGTGGCTCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGgtaagaagtactagcccgcagttcagatgtacgaggactaagcctagaga Alignment from Exonerate_protein2genome GAC------AAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATTCAAACATCAAGTGGC---------TCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGgtaagaagtactagcccgcagttcagatgtacgaggactaagcctagaga Alignment from Exonerate_coding2genome GAC------AAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTGGTTCCCAACGCTCCGCCTGCCTATGAGAAGCTCTCTTCACCGCCA ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATTCAAACATCAAGTGGC---------TCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGGTAAGAAGTACTAGCCCGCAGTTCAGATGTACGAGGACTAAGCCTagaga Alignment from GeneWise ------GACAAAAGGCGTCATATTGGTATTCAAAAAACCTCAAGGGAAAGATGCTCATGTGAGAGCCCTGATCACCAGGACAGCCGACTGTCTTCTCAAGAGAAATCCCATCAGCCCGTG ctcattgttattgatattttgattactattccgactgggtgttcctgcagGACAAAAACAAAAGGCGTCATATCGGTATTCAAACATCAAGTGGC---------TCATGTGAGTGCCCTGACCACCAGGATAGTCGACTCTCTTCACAGGAAAAATCTCACCAGCTAGTGgtaagaagtactagcccgcagttcagatgtacgaggactaagcctagaga #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTCAAC---------------GTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTC---------------AACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTCAAC---------------GTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTCAA---------------CGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTCAA---------------CGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTC---------------AACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTC---------------AACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAGGGAAA--------------------------------------------- tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTTTTGAACTC---------------AACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGGTAAGTGTTCTGGCAGCCATCTGGGTGCAAGGAATCAAAAAACCAAATGG #### Mrpl16_ID3289_2 --> 2 - 1 Original Alignment atTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAa tcgagaaggaattcagtctgctatgctggcggtgtcccttccttttccagatGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAagtaggaagtaccccagagattattacttatctccagatagtccacatatg Alignment from CESAR atTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAa tcgagaaggaattcagtctgctatgctggcggtgtcccttccttttccagatGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAagtaggaagtaccccagagattattacttatctccagatagtccacatatg Alignment from Spaln_aa2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA tcgagaaggaattcagtctgctatgctggcggtgtcccttccttttccagATGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAAgtaggaagtaccccagagattattacttatctccagatagtccacatatg Alignment from Spaln_nt2Genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA tcgagaaggaattcagtctgctatgctggcggtgtcccttccttttccagATGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAAgtaggaagtaccccagagattattacttatctccagatagtccacatatg Alignment from Pairagon ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA tcgagaaggaattcagtctgctatgctggcggtgtcccttccttttccagATGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAAgtaggaagtaccccagagattattacttatctccagatagtccacatatg Alignment from Exonerate_protein2genome ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA tcgagaaggaattcagtctgctatgctggcggtgtcccttccttttccagATGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAAgtaggaagtaccccagagattattacttatctccagatagtccacatatg Alignment from Exonerate_coding2genome CTGCGGATGCACTTTTCAGATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA tcgagaaggaattcagtctgctatgctggcgGTGTCCCTTCCTTTTCCAGATGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAAgtaggaagtaccccagagattattacttatctccagatagtccacatatg Alignment from GeneWise ATTCTTGGGCAGCCCTTCCCACCAGTGCTGGTCTGAAGACGCTCCTCCCAGTTCCAACTTTTGAAA tcgagaaggaattcagtctgctatgctggcggtgtcccttccttttccagATGCTTGGGCAACCCTTCCCACCAGTGCTGGCCTGAAGACTCTCTTCCCTGTTCCAACATATGAAAgtaggaagtaccccagagattattacttatctccagatagtccacatatg #### Mrpl21_ID24_6 --> 1 - 1 Original Alignment aAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAa atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagaAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGagtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc Alignment from CESAR aAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAa atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagaAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGagtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc Alignment from Spaln_aa2Genome AAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAA atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagAAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGAgtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc Alignment from Spaln_nt2Genome AAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAA atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagAAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGAgtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc Alignment from Pairagon AAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAA atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagAAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGAgtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc Alignment from Exonerate_protein2genome AAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAA atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagAAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGAgtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc Alignment from Exonerate_coding2genome AAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAA atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagAAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGAgtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc Alignment from GeneWise AAAGGAGCTTGTACGAGTTGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCCAAAATCAACATGAAATTTAGGAAAAGGAAAAACTTCAGGAAGAAAAAAA atagacccccttggagtacatgaagtgcccatttatttttaccgtaacagAAAGGAACTTGTGCGAGTTGAAGCCACAGTGATTGAAAAAACAGAATCGTGGCCCCGGGTCAATATGAAATTTAGGAAAAGGAAAAACTTCAGGAAAAAAAAGAgtaagaataggggcaatgtgcacctacaacatggttatgctcattctccc #### Ms4a13_ID3144_3 --> 0 - 0 Original Alignment TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag Alignment from CESAR TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag Alignment from Spaln_aa2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag Alignment from Spaln_nt2Genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag Alignment from Pairagon TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag Alignment from Exonerate_protein2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag Alignment from Exonerate_coding2genome TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag Alignment from GeneWise TTTGTCATTTCAGGGGCCTTCACTGTAAAAGCAGCAAAATATCAAAGTAGACATATG ctttgtgagctttaactttaaccattttagtgcctgctcctgttccccagTTTGTAATTCCCGGGGCCTTCACTGCAAAAGCAGCAAAATATCAAAGTAGACACATGgtaatctggaataggctggtcaatatgtacctgcatagagctggagatag #### Ms4a15_ID3094_3 --> 0 - 0 Original Alignment ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt Alignment from CESAR ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt Alignment from Spaln_aa2Genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt Alignment from Spaln_nt2Genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt Alignment from Pairagon ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt Alignment from Exonerate_protein2genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt Alignment from Exonerate_coding2genome ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt Alignment from GeneWise ACGGTGCAGATCCTGATCGGTCTCATCCACCTTGGCTTCGGCAGCGTCCTGCTTATGGTTCGGCGAGGCCACCTGGGGATGCTCTTCATCGAAGGTGGCGTCCCCTTCTGGGGAGGAGCTTGT gctgtaaagctcataataccaggaagcatttctgaatgtatctttctcagACAGAGCAAATCCTAATCGGACTTATCCATCTTGGCTTTGGTAGTGTACTGCTCATGGTTTGGCCTGGCCATCTGGGGATGCTTTTTATTGAAGGTGGGGTTCCCTTCTGGGGGGGTGCTTGTgtgagtgttctttgtggtggtgctagagatacctggctaaagaccagctt #### Ms4a15_ID3095_2 --> 1 - 0 Original Alignment cAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcattgcaaacagcAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat Alignment from CESAR cAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcattgcaaacagcAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat Alignment from Spaln_aa2Genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAG------CCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcattgcaaacagCAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat Alignment from Spaln_nt2Genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcattgcaaacagCAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat Alignment from Pairagon CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAG------CCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcattgcaaacagCAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat Alignment from Exonerate_protein2genome CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcattgcaaacagCAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat Alignment from Exonerate_coding2genome GTGGCAAGCCGCAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGC------CAGCCTCCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcATTGCAAACAGCAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat Alignment from GeneWise CAACGCCAGCGGCCTCCGCCCACCTCCAGCCATTCTGCCCACCTCCATGTGCCAGCCT------CCAGGGATCATGCAGTTCGAAGAGTCACAGCTGGGGGCGCAGGCGCCCAGAGCTACTCAACCACCTGATCTTAGACCAATGGAGACGTTCTTGACCGGAGAACCCAAAGCTTTAGGG ggttcctgtaaacattaatatggcggtgaccccctgttcattgcaaacagCAATGCCAGCAGCCTACGTCCCCCTCCATCCATCCTGCCTACCTCCATGTGTGAGCCTGAACCTCCAGGGAGCATGCAGTTTGAAGAGTCACAGCTTGGGGCACAAGCACCCAGTGCAACCCAACCACCTGATTTTAGACCAATGGAGACATTTTTGACTGGAAAACCTAAAAGCTTGGGGgtgagcgcggattgttatgtgactggacaaacctgctggccatcaaaaat #### Ms4a18_ID3103_2 --> 0 - 0 Original Alignment GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg Alignment from CESAR GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg Alignment from Spaln_aa2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg Alignment from Spaln_nt2Genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg Alignment from Pairagon GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg Alignment from Exonerate_protein2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg Alignment from Exonerate_coding2genome GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg Alignment from GeneWise GCCATCCAGATCCTCATTGGCCTATTTCATATCTTCTCTGCAGTCAACCCTCAACTCTACAACACTCAATTCTTCGTGGTTCCTTTGCTGGGGGTCTCAGGGTACCTGATCTGGGGAGGCCTGTCT tgaacctgaatggatctccttctagtttccatacatctccctctttacagGCCACCCAGATTCTTATTGGCCTATTTCAAATCTTTTCTGCAGTCAACCCTCAACTGTACAATACTCAATTCTTTGTCATTCCTTTGCTGGGGGTCTCTGGATATCTAATTTGGGGGGGCCTATCAgtatgtataaggctgtgaggtccttactggggagagtcagatcagagggg #### Ms4a2_ID3239_6 --> 0 - 0 Original Alignment GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc Alignment from CESAR GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc Alignment from Spaln_aa2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc Alignment from Spaln_nt2Genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGG---TCATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc Alignment from Pairagon GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGG---TCATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc Alignment from Exonerate_protein2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc Alignment from Exonerate_coding2genome GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc Alignment from GeneWise GAACTGGTGTTGATGATGCTGTTTCTCACCATCCTGGCCTTTTGCAGTGCTGTGTTGTTCACTATCTATAGGATTGGACAAGAGTTAGAAAGTAAAAAG agtaggcatagaccatgacattcacattaacaccaaggtgtctgttgcagGAACTGGTC---ATGATGCTGTTTTTTACTATACTAGCATTTTGCAGTGCTGTACTGTTCACTATCTATAGGATTGGACAGGAGTTGGAAAGTAAGAAGgtaagggtaataggggttatcgtataagagaatttgtgttttgctactcc #### Ms4a2_ID3241_4 --> 0 - 0 Original Alignment TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt Alignment from CESAR TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt Alignment from Spaln_aa2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt Alignment from Spaln_nt2Genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt Alignment from Pairagon TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt Alignment from Exonerate_protein2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt Alignment from Exonerate_coding2genome TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt Alignment from GeneWise TTTGTTTTGTCTGGATTTTTGTCAATTATCTCCGAAAGAAAAAACACATTGTATCTG ccagcagccaggaccacattgtggtcacggtctttttggactgtctccagTTTGTTTTGGCTGGATTTTTATCAATTATTTCAAAGAGAAAGAACACATTGTATTTGgtgaactgccaactattttgttcatgcctcagaattgagaaaagaaaatt #### Ms4a3_ID3249_4 --> 0 - 0 Original Alignment ATGCAAAACAGTTTTGGGATAAACATTGCC------AGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga Alignment from CESAR ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga Alignment from Spaln_aa2Genome ATGCAAAACAGTTTTGGGATAAAC------ATTGCCAGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga Alignment from Spaln_nt2Genome ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga Alignment from Pairagon ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga Alignment from Exonerate_protein2genome ATGCAAAACAGTTTTGGGATAAAC------ATTGCCAGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga Alignment from Exonerate_coding2genome ATGCAAAACAGTTTTGGGATAAAC------ATTGCCAGTACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga Alignment from GeneWise ATGCAAAACAGTTTTGGGATAAACATTGCCAGT------ACTACAATTGCATTTGTTGGGACTGTTTTCCTTTCTGTGCATTTGGCATTCAATACCCAGGCTTTCAAGGGTTGCCAATCTTCACCGTCACCTGATGTCTGCATTTCCCTGGGTTCCTCATCAGAT acataggcatatactgctgggattatttctctgtctctctgtctctgcagATGCAAAATAGTTCTGGAATTAACATTGCCATTGCTGTCACTACAATTGCGTTTGTTGGGGCAGTCTTTCTTTCTGTACATTTGGCATTTAACACTCATGCCTTCAAGGGTTGCCAATCATCACCATTGCCTGGTGTCTGCATTTCACTAGGTTCTTCATCAGATgtgagtatgaaagcttttattagctgtggagacttgactttcatctggga #### Ms4a3_ID3251_2 --> 0 - 0 Original Alignment GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTCAAC---TTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta Alignment from CESAR GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta Alignment from Spaln_aa2Genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta Alignment from Spaln_nt2Genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTCA---ACTTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta Alignment from Pairagon GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTCA---ACTTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta Alignment from Exonerate_protein2genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta Alignment from Exonerate_coding2genome GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta Alignment from GeneWise GCCATCCAGATCCTGAATGGAATACTGATTCTAGCTCTCGGAATTTTTCTGGTTTGTTTACAACACGTGTCCCACCACTTCAGGCATTTCTTCTTCTTCACCTTCTACACAGGCTACCCACTGTGGGGTGCTGTGTTT agaataaaaacagtattgcgcattctttactttattttcctatgtcatagGCAATACAGATTCTCAATGGTATATTGGTTCTAGCTCTTGGAATTTTTCTAGTTTGCTTACAGCGTGTGTCCCATCATTTC---AACTTCTTTTTTTCTGCATTTGACACAGGCTACCCACTGTGGGGTGCTGTATTTgtgagtatcttaccttcagcacgttgcattcatgtagtatcataagagta #### Ms4a4d_ID3222_2 --> 0 - 0 Original Alignment GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta Alignment from CESAR GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta Alignment from Spaln_aa2Genome GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta Alignment from Spaln_nt2Genome GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta Alignment from Pairagon GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta Alignment from Exonerate_protein2genome GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta Alignment from Exonerate_coding2genome GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta Alignment from GeneWise GCTATACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGATTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATG atacacacaacataagacatgcatcacctgacgcctattgcttgttctagGCTATACAAGTTATGATTGCATACATAAACTTCACCCTTGGAATAATAATTATATTAAACAGAGTGTCAGAACAATTCATGTCTGTGCTATTGCTAGCCCCATTTTGGGGATCGATAATGgtaggtaatacaggtaattaatacacagtcttgtaggactaattccacta #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc #### Ms4a6b_ID3214_3 --> 0 - 0 Original Alignment TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag Alignment from CESAR TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag Alignment from Spaln_aa2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag Alignment from Spaln_nt2Genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag Alignment from Pairagon TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag Alignment from Exonerate_protein2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag Alignment from Exonerate_coding2genome TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag Alignment from GeneWise TTTATAGTCTCTGGAATTCTGTCCATCGTCACGGAGACAAAGTCAACAAAAATTTTG cactgggactaatatgctgccaatgttaatagtgttggtttttccaacagTTTATAGTCTCTGGGATTCCGTCCATTGTCACAGAAACTAAGTCAACAAAAATTTTGgtaagtcgaatcaatgagcacatgaacacaggaccttaaaatctctaaag #### Ms4a6b_ID3215_4 --> 0 - 0 Original Alignment GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAG---AGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAA---TTCTTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGGTATA---ATCATCTCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt Alignment from CESAR GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTG---CAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTG---GACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGGT---ATAATCATCTCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt Alignment from Spaln_aa2Genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTC---TTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGGTATAATCATCTCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt Alignment from Spaln_nt2Genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCA---GAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTG---GACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGG---TATAATCATCTCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt Alignment from Pairagon GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTT---GCAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTC---TTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGGTATA---ATCATCTCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt Alignment from Exonerate_protein2genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTG---CAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTC---TTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGGT---ATAATCATCTCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt Alignment from Exonerate_coding2genome GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTG---CAGAGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTC---TTGGACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGGT---ATAATCATCTCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt Alignment from GeneWise GTAGACAGCAGCCTGACTCTGAATATCCTGAGTGTTTCATTTGCTTTCATGGGCATCATTATCATCTCTGTCAGCCTGGCTGGTTTGCATCCTGCCTCAGAGCAGTGCTTGCAG---AGCAAGGAGCTTAGACCAACTGAATATCATTACTACCAATTCTTG---GACAGGAACGAGTGCTTTGCCGCCAAGTCTGTTCTGGCT atggtacacatagctaggaaagtatagaagcccggttttttgggttgcagGTCGACAGCAGTCTAACTCTGAATATACTGAGTGTTTCATTTGGTTTTATGGGTATAATCATC---TCTGTCAGTCTGGTTGGTTTGCAGCCTGCACCAGAACAGTGCTTAGAAGAGAGCAAAGAGCTTAGACCAGCTGAGTACCATTATTACCAATTCCTGCTGGATAGGAATGAATGCTTCACTGCCAAATTTGTACTGGCTgtgggtacttctgatgtcttagataccatgcttaattatcaaaagagtgt #### Ms4a6c_ID3198_3 --> 0 - 0 Original Alignment TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag Alignment from CESAR TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag Alignment from Spaln_aa2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag Alignment from Spaln_nt2Genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag Alignment from Pairagon TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag Alignment from Exonerate_protein2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag Alignment from Exonerate_coding2genome TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag Alignment from GeneWise TTTATTGCCTCTGGAATTTTGTCCATCATTACGGAGAGAAAGTCAACAAAACCTTTG tggagatatcactctagaggagcgatcttttctgttttctatttgtaaagTTTATTGCCTCTGGAATTTTGTCCATCATTACAGAAAGAAAGTCAAGAAAACCTCTGgtagaaccagaactggcccttctgggaccaaaggagtcttcaggcttaag #### Ms4a8a_ID3115_5 --> 0 - 0 Original Alignment CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc Alignment from CESAR CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc Alignment from Spaln_aa2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc Alignment from Spaln_nt2Genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc Alignment from Pairagon CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc Alignment from Exonerate_protein2genome CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc Alignment from Exonerate_coding2genome AATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagctgAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc Alignment from GeneWise CTGAATGGCAGTGTGGGCTTGAACATCTTCAGCGCCATCTGTTCTGCGGTGGGCATCATGCTCTTCATCACAGACATCAGTATCTCATCAGGATACATCTACCCTAGCTACTACCCTTACCAGGAGAACTTGGGTGTG cagcttggccatgccacctctttactcccaaatgtcttctctgttcttagCTGAATAGCAGCATAGACTTGAATATCTTCATTGCCATTTGT------GTGGATATTATGCTCTTCATCTTTGACATTAGTATCTCATCAGGATTCATTTACCCTAGTTATTACCCTCACCAGGGCAACTTGGGTGTGgtgagggtggtaaccaaaggccttgtccctcatttctgtaaaaccatacc #### Ms4a8a_ID3117_3 --> 0 - 0 Original Alignment GCCATCCAGATCCTGATCGGC---CTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGgtgagtagtttctagtcaaactgttcctagtcaactcttgaagtagctct Alignment from CESAR GCCATCCAGATCCTGATC---GGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGgtgagtagtttctagtcaaactgttcctagtcaactcttgaagtagctct Alignment from Spaln_aa2Genome GCCATCCAGATCCTGATC---GGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGgtgagtagtttctagtcaaactgttcctagtcaactcttgaagtagctct Alignment from Spaln_nt2Genome GCCATCCAGATCCTGATCGG---CCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACA------GCCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGgtgagtagtttctagtcaaactgttcctagtcaactcttgaagtagctct Alignment from Pairagon GCCATCCAGATCCTGAT---CGGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACA------GCCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGgtgagtagtttctagtcaaactgttcctagtcaactcttgaagtagctct Alignment from Exonerate_protein2genome GCCATCCAGATCCTGATC---GGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGgtgagtagtttctagtcaaactgttcctagtcaactcttgaagtagctct Alignment from Exonerate_coding2genome GCCATCCAGATCCTGATC---GGCCTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGGTTTATCATTTCAGGATCTCTCTCAGTGGCGGCAGAAACTCAG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGGTGAGTAGTTTCTAGTCAAACTGTTCCTAGTCAACTCTTGAAgtagctct Alignment from GeneWise GCCATCCAGATCCTGATCGGC---CTGGTGCACATCGGCCTGGGCTCCATCATGATCACCAACCTCTTCAGCCACTATACACCTGTCTCCCTCTATGGAGGTTTCCCCTTCTGGGGAGGCATCTGG agcgcctcagatacgagggctctggttgatcttatatttttaatcaacagGCCATACAGATCTTGATTGGTGGCTTGGTGCACATTGGCTTAGGTTCCATCATGATCACCAACCTTTTCACACAG------CCTGTTTCTCTCTATGGAAGCTGCCCTTTTTGGGGAGGCATCTGGgtgagtagtttctagtcaaactgttcctagtcaactcttgaagtagctct #### Mta2_ID2531_4 --> 2 - 2 Original Alignment ggGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAag agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagggGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAaggtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa Alignment from CESAR ggGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAag agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagggGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAaggtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa Alignment from Spaln_aa2Genome GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagGGGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAAGgtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa Alignment from Spaln_nt2Genome GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagGGGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAAGgtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa Alignment from Pairagon GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagGGGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAAGgtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa Alignment from Exonerate_protein2genome GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagGGGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAAGgtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa Alignment from Exonerate_coding2genome GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagGGGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAAGgtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa Alignment from GeneWise GGGAGTTTGAGGAGGAATCAAAACAGCCAGGGGTCTCCGAGCAGCAGAGACATCAACTGAAGCACCGAGAGCTTTTTCTTTCTCGGCAGTTTGAATCATTACCAGCCACCCACATAAG agaccgtagttattagcaaaataggcatcagtttctcctctttctctcagGGGAGTCTGAAGATGAATCTAAACAGCCAGGGGTTTCTGAGCAACAGCGGCATCAGTTCAAGCAACAAGAGCTCTTTCTCTCTCGGCAGTTTGAGTCATTACCAGCTGCTCACATAAGgtaagagaaaactggagttactgtaaacagtgcactcctatttgggaaaa #### Mta2_ID2533_6 --> 0 - 1 Original Alignment GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGggtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from CESAR GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGg ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGggtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Spaln_aa2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Spaln_nt2Genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Pairagon GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Exonerate_protein2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from Exonerate_coding2genome GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc Alignment from GeneWise GACTGCTTTTTTTACTCACTGGTGTTTGATCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG ggcataatatctgcacaaaaccacattgacattccctctgtctcttgaagGAGTGCTTTTTCTATTCACTGGTGTTTGACCCTGTGCAGAAGACACTTCTAGCAGATCAAGGGGAGATCAGGGTTGGTTGCACGTTCCAAGCTGAGATCCCAGATCACTTGGCAGAGGgtaagtacaaaactgggttgaacttgatattttctgttggcgacatgatc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCA------GCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACT------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATAT---CACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACT------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCA------ATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGA-----TATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACT--------AGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCTACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagtgccgtgggcacttttgttagagctctagattgcaacagctccatttctattcagcagtccagcttgcatatgagcgcagctactagagatattatcactctggtatGGACCAAGTCACAAATATTTTAGTATGATAAGCCAAGAGTGGAGTG Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGAT---ATCACTCTG gctaatgtggcttctaataagaagaaccctgcttgcttcctctcgcacagTGCCGTGGGCACTTTTGTTAGAGCTCTAGATTGCAACAGCTCCATTTCTATTCAGCAGTCCAGCTTGCATATGAGCGCAGCT------ACTAGAGATATTATCACTCTGgtatggaccaagtcacaaatattttagtatgataagccaagagtggagtg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from Exonerate_coding2genome AGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTGTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT AAGGCTGAAAAGACCGTCAAACCCTCATACCCATTTCTCCTCCCCTGCAGTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT aaggctgaaaagaccgtcaaaccctcatacccatttctcctcccctgcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTAGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCAAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAAGACTTTgtttgggatcaagaccaagaagggaaagaacaatgaggagactgaaaaga #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggatcactgtaattcagcaattcctttacactttattttctgtttttcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCCAACATGCAGTACCGACTTTGTGCTTCTTGTTGGGTTTATTGGAAAACATATGGGGGCTTGAAAACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtatgggtgagtgtgttggaaactagcatgggaattgaaccaaaggggaa #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaaggcTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtgagtaggatgacgttttcgagcaaggtcagatcttctatttcaacgat Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaaggcTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtgagtaggatgacgttttcgagcaaggtcagatcttctatttcagcttc Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcaacgat Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcaacgat Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcaacgat Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcaacgat Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcaacgat Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG tgctggtcaccctggagattcttctctcttgtttcttggttctcctaaagGCTCAATCCGACTTCCTAAGTCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtgagtaggatgacgttttcgagcaaggtcagatcttctatttcaacgat #### Mtl5_ID51_3 --> 0 - 1 Original Alignment GTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAg cgctatcaaggttgggcattaaaagctataacccagagctcttcttccagGTAATTTGTCAGCTCAAAGGAGGTGCCCAGATACTCTGCATAGACAACTGTGGTGCCAGGGAGGTCAAAGTACTCCATCTACTTCCTCAATACGATGATCAGAGCAGTTTTCATCAGTCTggtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt Alignment from CESAR GTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAg cgctatcaaggttgggcattaaaagctataacccagagctcttcttccagGTAATTTGTCAGCTCAAAGGAGGTGCCCAGATACTCTGCATAGACAACTGTGGTGCCAGGGAGGTCAAAGTACTCCATCTACTTCCTCAATACGATGATCAGAGCAGTTTTCATCAGTCTggtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt Alignment from Spaln_aa2Genome GTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAG cgctatcaaggttgggcattaaaagctataacccagagctcttcttccagGTAATTTGTCAGCTCAAAGGAGGTGCCCAGATACTCTGCATAGACAACTGTGGTGCCAGGGAGGTCAAAGTACTCCATCTACTTCCTCAATACGATGATCAGAGCAGTTTTCATCAGTCTGgtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt Alignment from Spaln_nt2Genome GTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAG cgctatcaaggttgggcattaaaagctataacccagagctcttcttccagGTAATTTGTCAGCTCAAAGGAGGTGCCCAGATACTCTGCATAGACAACTGTGGTGCCAGGGAGGTCAAAGTACTCCATCTACTTCCTCAATACGATGATCAGAGCAGTTTTCATCAGTCTGgtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt Alignment from Pairagon GTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAG cgctatcaaggttgggcattaaaagctataacccagagctcttcttccagGTAATTTGTCAGCTCAAAGGAGGTGCCCAGATACTCTGCATAGACAACTGTGGTGCCAGGGAGGTCAAAGTACTCCATCTACTTCCTCAATACGATGATCAGAGCAGTTTTCATCAGTCTGgtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt Alignment from Exonerate_protein2genome GTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAG cgctatcaaggttgggcattaaaagctataacccagagctcttcttccagGTAATTTGTCAGCTCAAAGGAGGTGCCCAGATACTCTGCATAGACAACTGTGGTGCCAGGGAGGTCAAAGTACTCCATCTACTTCCTCAATACGATGATCAGAGCAGTTTTCATCAGTCTGgtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt Alignment from Exonerate_coding2genome cgctatcaaggttgggcattaaaagctataacccagagctcttcttccaggtaatttgtcagctcaaaggaggtgcccagatactctgcatagacaactgtggtgccagggaggtcaaagtactccatctacttcctcaatacgatgatcagagcagttttcatcagtctggtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt Alignment from GeneWise GTGATTTGTCAGCTGAAAGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCTCAGTACGATGACCAGAGCAGTTTCCCTCAGTCAG cgctatcaaggttgggcattaaaagctataacccagagctcttcttccagGTAATTTGTCAGCTCAAAGGAGGTGCCCAGATACTCTGCATAGACAACTGTGGTGCCAGGGAGGTCAAAGTACTCCATCTACTTCCTCAATACGATGATCAGAGCAGTTTTCATCAGTCTGgtaagtcaattctaagaatgttctaagtaagttctttcagtagctacctt #### Mtl5_ID52_4 --> 2 - 0 Original Alignment agCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagacCTCCCCAAGCCTATGACTACTCTCGTGGGGGAACTTCTTCCAGTACCAGCAAAGTTAAATCTAATTACACAGgtaaataacttttcccttatatcacttatggccccagaatgtgtggttag Alignment from CESAR agCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagacCTCCCCAAGCCTATGACTACTCTCGTGGGGGAACTTCTTCCAGTACCAGCAAAGTTAAATCTAATTACACAGgtaaataacttttcccttatatcacttatggccccagaatgtgtggttag Alignment from Spaln_aa2Genome AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagACCTCCCCAAGCCTATGACTACTCTCGTGGGGGAACTTCTTCCAGTACCAGCAAAGTTAAATCTAATTACACAGgtaaataacttttcccttatatcacttatggccccagaatgtgtggttag Alignment from Spaln_nt2Genome AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagACCTCCCCAAGCCTATGACTACTCTCGTGGGGGAACTTCTTCCAGTACCAGCAAAGTTAAATCTAATTACACAGgtaaataacttttcccttatatcacttatggccccagaatgtgtggttag Alignment from Pairagon AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagACCTCCCCAAGCCTATGACTACTCTCGTGGGGGAACTTCTTCCAGTACCAGCAAAGTTAAATCTAATTACACAGgtaaataacttttcccttatatcacttatggccccagaatgtgtggttag Alignment from Exonerate_protein2genome AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagACCTCCCCAAGCCTATGACTACTCTCGTGGGGGAACTTCTTCCAGTACCAGCAAAGTTAAATCTAATTACACAGgtaaataacttttcccttatatcacttatggccccagaatgtgtggttag Alignment from Exonerate_coding2genome agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagacctccccaagcctatgactactctcgtgggggaacttcttccagtaccagcaaagttaaatctaattacacaggtaaataacttttcccttatatcacttatggccccagaatgtgtggttag Alignment from GeneWise AGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGACTTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAG agcctacttttggattcatggtgaccaatttctttgtgatttgcaaatagACCTCCCCAAGCCTATGACTACTCTCGTGGGGGAACTTCTTCCAGTACCAGCAAAGTTAAATCTAATTACACAGgtaaataacttttcccttatatcacttatggccccagaatgtgtggttag #### Myof_ID7445_52 --> 1 - 0 Original Alignment cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagcCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc Alignment from CESAR cCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagcCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc Alignment from Spaln_aa2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagCCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc Alignment from Spaln_nt2Genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagCCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc Alignment from Pairagon CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagCCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc Alignment from Exonerate_protein2genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagCCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc Alignment from Exonerate_coding2genome CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagCCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc Alignment from GeneWise CCGACCGGAAACCTCCTTCCTCTGGTTCACGAACCCTTGCAAGACCATGCGCTTCATCGTGTGGCGCCGGTTCAAGTGGGTGATCATCGGCCTGCTTCTGCTGCTCATCCTGTTGCTGTTCGTGGCTGTGCTCCTGTACTCTCTTCCG gtgtctgtttctttcaacacttgccagctttttgtcttactatttttcagCCGCCCAGAGACATCTTATCTTTGGTTCACAAACCCTTGCAAGACAATGTGCTTCATAGTCTGGCGACGGTTTAAATGGGTTATCATCGGCCTGCTCTTGTTGTTCATCCTCTTGCTGCTTGTGGCTGTACTCCTGCACTCCCTTCCTgtgagggaaatactatgaaggctaataaatctatggatctacaaaagtcc #### Myof_ID7449_49 --> 0 - 1 Original Alignment GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGg caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAggtgagacctactttttaggtaattataacatcaagactgcccatgaaatc Alignment from CESAR GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGg caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAggtgagacctactttttaggtaattataacatcaagactgcccatgaaatc Alignment from Spaln_aa2Genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtgagacctactttttaggtaattataacatcaagactgcccatgaaatc Alignment from Spaln_nt2Genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtgagacctactttttaggtaattataacatcaagactgcccatgaaatc Alignment from Pairagon GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtgagacctactttttaggtaattataacatcaagactgcccatgaaatc Alignment from Exonerate_protein2genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtgagacctactttttaggtaattataacatcaagactgcccatgaaatc Alignment from Exonerate_coding2genome GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtgagacctactttttaggtaattataacatcaagactgcccatgaaatc Alignment from GeneWise GAGCATTTCTGGAGTATTGATCAAACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCCTGGACGACTACTTGG caacgttaatccagtgtttgcaggatgatgtatgaaattgtgttttgtagGAGCACTTTTGGAGTATTGATCAGACAGAATTTCGAGTCCCTCCTCGGCTGATCATTCAGATATGGGACAATGACAAGTTTTCCTTGGACGACTACTTAGgtgagacctactttttaggtaattataacatcaagactgcccatgaaatc #### Myof_ID7456_43 --> 1 - 2 Original Alignment aATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTgt tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagaATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCgtgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc Alignment from CESAR aATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTgt tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagaATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCgtgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc Alignment from Spaln_aa2Genome AATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTGT tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagAATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCGTgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc Alignment from Spaln_nt2Genome AATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTGT tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagAATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCGTgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc Alignment from Pairagon AATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTGT tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagAATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCGTgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc Alignment from Exonerate_protein2genome AATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTGT tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagAATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCGTgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc Alignment from Exonerate_coding2genome AATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTGT tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagAATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCGTgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc Alignment from GeneWise AATGTACGAACTGAGCTGCTACTTGCCTCAAGAGAAAGACCTGAAGATCTCTGTCTATGACTACGATACCTTCACCCGAGATGAGAAGGTGGGAGAGACAACCATTGACCTGGAGAACCGCTTCCTTTCCCGGTTCGGGTCTCACTGCGGAATCCCTGAGCAGTACTGTGT tgtctcaatgtccacatgtgaggccttcaattttgttttaatttttctagAATGTACAAACTGAGCTGTTATTTGCCTCAAGAGAAAGATTTGAAGATCTCTGTCTATGATTATGGTACATTCACCCGGGATGAGAGGGTGGAAGAGACTACCATTGACTTGGAGAACTGCTTCCTTTCTCGGTTTGGATCTCACTGTGGAATCCCAGAGCAATACTGCGTgtatgggagtttgacaagctctccttgatgctgggtggaccaagttgatc #### Myof_ID7477_25 --> 0 - 2 Original Alignment TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAag gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAaggtgaggattagaatcctggtattttagattttgtttactggtgaatgcat Alignment from CESAR TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAag gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAaggtgaggattagaatcctggtattttagattttgtttactggtgaatgcat Alignment from Spaln_aa2Genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAAGgtgaggattagaatcctggtattttagattttgtttactggtgaatgcat Alignment from Spaln_nt2Genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAAGgtgaggattagaatcctggtattttagattttgtttactggtgaatgcat Alignment from Pairagon TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAAGgtgaggattagaatcctggtattttagattttgtttactggtgaatgcat Alignment from Exonerate_protein2genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAAGgtgaggattagaatcctggtattttagattttgtttactggtgaatgcat Alignment from Exonerate_coding2genome TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAAGgtgaggattagaatcctggtattttagattttgtttactggtgaatgcat Alignment from GeneWise TATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTCAAGAGAGAATTCTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGAGACTGGGTGGTTGACCCTGAACGAAG gatcttgatatttgatggagatttccaatgcccctctcctgtgtccacagTATGAAAACCAAGCCCTTGTGTTTGGGAAGTGGGGCACCTCTGGACTGGTGGGACGCCATAAATTCTCTGATGTCACAGGAAAAATAAAACTTAAGAGGGAATTTTTTTTACCTCCCAAAGGCTGGGAGTGGGAAGGCGACTGGGTGGTTGAGCCTGAACGAAGgtgaggattagaatcctggtattttagattttgtttactggtgaatgcat #### Myof_ID7478_24 --> 0 - 0 Original Alignment TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc Alignment from CESAR TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc Alignment from Spaln_aa2Genome TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc Alignment from Spaln_nt2Genome TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc Alignment from Pairagon TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc Alignment from Exonerate_protein2genome TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc Alignment from Exonerate_coding2genome TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc Alignment from GeneWise TATCCACAAGAAAAAACCAATGGGCCCAAAGTGCCTGTGGAGCTGCGCGTGAACATCTGGCTGGGTTTAAGTGCTGTGGAAAAGAAGTTCAATAGCTTCGCGGAAGGCACCTTCACCGTCTTTGCTGAAATG ggtgacataagtgttgatatactcaagagactgcttctctgcccctccagCATCCACAAGAAAAAACCAATGGGCCTAAAGTACCAGTTGAGCTGTGTGTGAACATTTGGCTTGGGATAAGTGCTGTAGAAAAGAAGTTCAATAGCTTTGCAGAAGTCACTTTCACAGTATTTGCTGAAATGgtgagattagtaacagacctactaccttgccattgcaacaagctttagcc #### Myof_ID7479_23 --> 0 - 0 Original Alignment CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACTT---TATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca Alignment from CESAR CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACTT---TATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca Alignment from Spaln_aa2Genome CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACTT---TATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca Alignment from Spaln_nt2Genome CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACT---TTATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca Alignment from Pairagon CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACT---TTATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca Alignment from Exonerate_protein2genome CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACTT---TATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca Alignment from Exonerate_coding2genome CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACTT---TATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca Alignment from GeneWise CCTCAGAACAGCATGCCTGACATCATCATCTGGATGATCCGTGGAGAGAAAAGACTGGCTTATGCACGAATCCCTGCCCACCAAGTCTTGTACTCCACCAGCGGTGGGAACGCCTCTGGAAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAG gcaaagagcaagcaaccttgcttaagaattttatttctgtttcttcttagCCGCAGAACAGCATGCCTGATATTATCATCTGGATGATCCGTGGAGAAAAAAGACTT---TATGCACGAATCCCTGCTCACCAAGTCTTGTACTCCACCAGCAGTGGGAATGCTTCTGGGAAATACTGTGGGAAAACCCAAACCATCCTTCTGAAGgtgagctttatcccaagatgaagtggtacttcaaaacagctggctgttca #### Myof_ID7483_19 --> 0 - 1 Original Alignment AAGTACCAGCGAAGGCGGAAGTATAGCCTGTCCGCCGTGTTCCATTCAGCCACCATG---TTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACg ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCAACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATggtagagtggatttggagttctttttcattttctggtcatactccaactga Alignment from CESAR AAGTACCAGCGAAGGCGGAAGTATAGCCTGTCCGCCGTGTTCCATTCAGCCACCATGTTG---CAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACg ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCAACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATggtagagtggatttggagttctttttcattttctggtcatactccaactga Alignment from Spaln_aa2Genome AAGTACCAGCGAAGGCGGAAGTATAGCCTGTCCGCCGTGTTCCATTCAGCCACCATG---TTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACG ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCAACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATGgtagagtggatttggagttctttttcattttctggtcatactccaactga Alignment from Spaln_nt2Genome AAGTACCAGCGAAGGCGGAAGTATAGCCTGTCCGCCGTGTTCCATTCAGCCACCATGTTGC---AAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACG ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCAACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATGgtagagtggatttggagttctttttcattttctggtcatactccaactga Alignment from Pairagon AAGTACCAGCGAAGGCGGAAGTATAGC--------------CTGTCCGCCGTGTTCCATTCAGCCACCATGT---TGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACG ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCA--------------ACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATGgtagagtggatttggagttctttttcattttctggtcatactccaactga Alignment from Exonerate_protein2genome AAGTACCAGCGAAGGCGGAAGTATAGCCTGTCCGCCGTGTTCCATTCAGCCACCATG---TTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACG ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCAACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATGgtagagtggatttggagttctttttcattttctggtcatactccaactga Alignment from Exonerate_coding2genome AAGTACCAGCGAAGGCGGAAGTATAGCCTGTCCGCCGTGTTCCATTCAGCCACCATG---TTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACG ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCAACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATGgtagagtggatttggagttctttttcattttctggtcatactccaactga Alignment from GeneWise AAGTACCAGCGAAGGCGGAAGTATAGCCTGTCCGCCGTGTTCCATTCAGCCACCATGTTG---CAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGATGCAACCTGTAAACCTTTGGCATCAACCACTCAATACAGCCGTGCAGTATTTGACG ttgctacaggcacatggagccatgttttctgattctttttgtgtctccagAGGTACCAACAGCGACATAAATACCGTTTGTCCACTGTATTTCATTCAGTCACCATGTTGCTGCAAGATGTGGGTGAAGCTATTCAGTTTGAGATCAGCATCGGCAATTATGGCAATAAATTTGATGCA---TGTAAGCCTTTGGCTTCAACTTCCCGATATAGCCATGCAGTATTTGATGgtagagtggatttggagttctttttcattttctggtcatactccaactga #### Myof_ID7485_17 --> 2 - 0 Original Alignment caACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagcaACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat Alignment from CESAR caACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagcaACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat Alignment from Spaln_aa2Genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagCAACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat Alignment from Spaln_nt2Genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagCAACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat Alignment from Pairagon CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagCAACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat Alignment from Exonerate_protein2genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagCAACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat Alignment from Exonerate_coding2genome CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagCAACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat Alignment from GeneWise CAACTACAGGAGAGACAGAGGTGGGGTTTGTCCCAACATTCGGACCTTGTTATTTGAACCTTTACGGAAGCCCCAGAGAGTACACAGGATTTCCAGATCCCTATGATGAGCTCAACTCAGGAAAG gtttgcttaaccagtaaagatcagcattagttgtttctcatggcttacagCAACTACGGGAGAGACTGTGGTGGGATTTGTTCCAACTCTTGGACCGTGTTATTTGAACCTTTATGGAAGTCCCAGGGAATATACAGGATTTGCAGACCCATATGATGAACTCAATTCTGGAAAAgtgagtctatcagatgtgggtagtgttgatcactccctaccacccgggat #### Myof_ID7490_12 --> 0 - 1 Original Alignment CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGa ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGagtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata Alignment from CESAR CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGa ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGagtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata Alignment from Spaln_aa2Genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGAgtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata Alignment from Spaln_nt2Genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGAgtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata Alignment from Pairagon CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGAgtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata Alignment from Exonerate_protein2genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGAgtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata Alignment from Exonerate_coding2genome CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGAgtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata Alignment from GeneWise CCTGAGAAACGAGACCGTGACAATGACAGTGATGACGTGGAGAGCAACTTGTTACTTCCGGCAGGCATTGCCCTCCGGTGGGTGACCTTCATGCTGAAGATCTACCGAGCCGAGGACATCCCCCAGA ttagcttacatattgtttaaatagctcatctttgttccagcagtttggagCCTGAGAAACAGGACCGTGACAATGACAGTCAAGATGTGGAAACTAAGCTGTTACTTCCAGCAGGTATTGCCCTTCGTTGGGTAACCTTCATGCTGAAGATCTACCGAGCTGCGGACATCCCCCAGAgtaaaaatgaaagaatgtaacatatcatgatgattgcacagtaccaaata #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from CESAR GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Spaln_aa2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Spaln_nt2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Pairagon GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Exonerate_protein2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Exonerate_coding2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from GeneWise GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga #### Myof_ID7495_7 --> 0 - 0 Original Alignment ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag Alignment from CESAR ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag Alignment from Spaln_aa2Genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag Alignment from Spaln_nt2Genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag Alignment from Pairagon ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag Alignment from Exonerate_protein2genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag Alignment from Exonerate_coding2genome ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag Alignment from GeneWise ATCCGTGTCAGAGTGATCGAGGGCCGTCAGTTATGCGGCAACAACATAAGGCCCGTGGTGAAAGTTCACATCTGTGGTCAGACGCACCGCACGAGAATCAAGAGAGGGAACAATCCGTTTTTTGACGAG ttcacactttacaaacttgagtgtctgcccataccccattgctccgtcagATCCATGTTAGAGAGATCAAGGGCCGACAGTTATGTGGGAACAACATAAGGCCTGTGGTGAAAGTTCATATCAGTGGGGAGACACACCACACAAGAAACAAGAGAGGGAATAATCCATTCTTTGATGAGgtaaggaggttggaagtgcagccccgagcagatgaagatgtaaatccaag #### Myrf_ID2715_22 --> 2 - 2 Original Alignment acCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCag tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagatCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCaggtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc Alignment from CESAR acCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCag tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagatCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCaggtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc Alignment from Spaln_aa2Genome ACCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCAG tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagATCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCAGgtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc Alignment from Spaln_nt2Genome ACCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCAG tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagATCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCAGgtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc Alignment from Pairagon ACCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCAG tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagATCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCAGgtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc Alignment from Exonerate_protein2genome ACCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCAG tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagATCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCAGgtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc Alignment from Exonerate_coding2genome ACCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCAG tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagATCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCAGgtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc Alignment from GeneWise ACCCAGCGCCATCCCTGACCTCCATCCAGCTGCTGGAGAATTCCATGCCTATCACTTCTCAGTACTGTGTGCCAGAAGGTGCTTGCAG tgatacacaccagggtccagctttcaaaccaagactgctgtctgtttcagATCCAGCACCATCCCTGACCTCCATCCAGCTGCTGAAAAATTCCATGCCTATCTCTTCTCAGTACTGTGTGCCAGACGGTGCATGCAGgtaggtaggagtctctcaaaccagtcctactcaggtgcaatgtctgatcc #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccggctacaaagccatcatgtaatgctattaactttctcctgtcttgtagtAGGTCTAGTCAG---------ACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGggttatcgggggtgcgtggtaggatgtcctgagtctgatggatttgttggg Alignment from CESAR cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccggctacaaagccatcatgtaatgctattaactttctcctgtcttgtagtAGGTCTAGTCAG---------ACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGggttatcgggggtgcgtggtaggatgtcctgagtctgatggatttgttggg Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctacaaagccatcatgtaatgctattaactttctcctgtcttgtagTAGGTCTAGTCAG---------ACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGGgttatcgggggtgcgtggtaggatgtcctgagtctgatggatttgttggg Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctacaaagccatcatgtaatgctattaactttctcctgtcttgtagTAGGTCTAGTCA---------GACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGGgttatcgggggtgcgtggtaggatgtcctgagtctgatggatttgttggg Alignment from Pairagon CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctacaaagccatcatgtaatgctattaactttctcctgtcttgtagTAGGTCTAGTCA---------GACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGGgttatcgggggtgcgtggtaggatgtcctgagtctgatggatttgttggg Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctacaaagccatcatgtaatgctattaactttctcctGTCTTGTAGTAGGTCTAGTCAGACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGGgttatcgggggtgcgtggtaggatgtcctgagtctgatggatttgttggg Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccggctacaaagccatcatgtaatgctattaactttctcctGTCTTGTAGTAGGTCTAGTCAGACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGGgttatcgggggtgcgtggtaggatgtcctgagtctgatggatttgttggg Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTG--------------------------------------------------- ccggctacaaagccatcatgtaatgctattaactttctcctgtcttgtagTAGGTCTAGTCAG---------ACCACACAGCTCCGACAGTCATCCATGACTACTGGACTACCAGGAACCCAGCCCTCTTTACTGCTGGGTTATCGGGGGTGCGTGGTAGGATGTCCTGAGTCTGATGGATTTGTTGGG #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from CESAR gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Pairagon GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTGGCAGCCCAGATCTCAGAGCGTATCATTGTGCGG atgggagaatgggtacaggtatccctgagtgtctgctccctctgccaaagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGGCAGCCCAGATTTCAGAGCGTATCATTGTGCGGgtaaccaccacaactacaccctggcagcccagatttcggagcatatcatt #### Myrf_ID2733_5 --> 2 - 2 Original Alignment acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga tggactcaggagggatgtcactccctcaaccttctgattgatccccacagatCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTcagtacagtataggtagaagctctatggaggccccttggaagtaaggaagag Alignment from CESAR acCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTga tggactcaggagggatgtcactccctcaaccttctgattgatccccacagatCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTcagtacagtataggtagaagctctatggaggccccttggaagtaaggaagag Alignment from Spaln_aa2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggagggatgtcactccctcaaccttctgattgatccccacagATCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtacagtataggtagaagctctatggaggccccttggaagtaaggaagag Alignment from Spaln_nt2Genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggagggatgtcactccctcaaccttctgattgatccccacagATCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtacagtataggtagaagctctatggaggccccttggaagtaaggaagag Alignment from Pairagon ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggagggatgtcactccctcaaccttctgattgatccccacagATCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtacagtataggtagaagctctatggaggccccttggaagtaaggaagag Alignment from Exonerate_protein2genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggagggatgtcactccctcaaccttctgattgatccccacagATCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtacagtataggtagaagctctatggaggccccttggaagtaaggaagag Alignment from Exonerate_coding2genome ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggagggatgtcactccctcaaccttctgattgatccccacagATCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtacagtataggtagaagctctatggaggccccttggaagtaaggaagag Alignment from GeneWise ACCCCCATCTTCTACGCACCATAACCCCGGAGACTCTATGCCACGTGGGAGTTTCTTCCCGCCTGGAGCACCCGCCCCCACCTCCAGCCCACCTGCCAGGCCCACCACCACCGCCACCTCCCCCACCTCACTACCCTGTCCTGCAACGGGACCTCTACATGAAGGCTGAGCCCCCTGTACCCCCTTATGCTGCCATGGGGCCGGGTCTGGTGCCCCCCGAGCTCCATCACACCCAGCAGACCCAGGTGCTACACCAGCTGCTGCAACAGCATGGAGCTGA tggactcaggagggatgtcactccctcaaccttctgattgatccccacagATCCACATCTTCTTCACGCCATAACTTTGGAAACTCTCTGTCATGTGGGGATTTCTTCCCGGCTGGAACACCTGCCCCCACCTCCAGCCCATCTGCCAGGGCCACCTCCACCACCTCCTCCGCCACCTCATTATCCTGTCCTACAGCGAGACCTCTACATGGAGGCTGAGCCTCCTGTACCCCCTTATGCTGCCATGGGGCCAGGTCTGGTGCCTCCTGAGCTGCATCATACCCGTCAAACCCAGGTGCTACACCAATTACTGCAGCAGCATGGGGCTCAgtacagtataggtagaagctctatggaggccccttggaagtaaggaagag #### Myrf_ID2737_3 --> 1 - 2 Original Alignment cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCC------CCAgg agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagcTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCCTGGGCGC---------CTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTgggtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc Alignment from CESAR cTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAgg agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagcTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCCTGGGCGC---------CTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTgggtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc Alignment from Spaln_aa2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagCTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCCTGGGCGC---------CTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTGGgtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc Alignment from Spaln_nt2Genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCCC------CAGG agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagCTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCC---------TGGGCGCCTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTGGgtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc Alignment from Pairagon CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATG------CCCCAGG agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagCTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCCTGGGCG---------CCTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTGGgtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc Alignment from Exonerate_protein2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagCTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCCTGGGCGC---------CTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTGGgtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc Alignment from Exonerate_coding2genome CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTAT------GCCCCAGG agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagCTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCCTGGGCGC---------CTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTGGgtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc Alignment from GeneWise CTGCTTCCCTGAGATCTCTGCACCAGCCAGCACTGCCTCCTTCCCCCACGGGCCACCGGCCATTCCCGGCTCCAGCGGGCTCCACCATCTGAGCCCCCCTGGGAGCGGACCATCCCCTGGGCGCCATGGCCCCCTCCCACCCCCGACCTACGGCACCCCACTCAACTGCAACAACAACAACGGCATGGGCACCGCCCCTAAGCCCTTCCTGGGGGGCTCTGGGCCTCCCATCAAAGCAGAGCCAAAGGCCCCCTATGCC------CCAGG agtatcctcttgggatgagaactggggaaagtctccttttctctgtgcagCTGCTTTCCTGAGCTTTCCTCACCAGCAAGTACTGCCTTCTTCCCCCAAGGGCCACTAACCATCCCTGGCTCTAGTGGGCTTCACCATCTAAGCCCACCTGGGACTGGACCATCCCCTGGGCGC---------CTCCCACCCCCCACATATGGAACCCCACTCAACTGCAACAACAACACCAGTATGGGCACCACTCCTAAGCCCTTCCTGGGGGGCCCTGGTCTCTCAATCAAAGCAGAGCCAAAGGCACCTTATGCACGTGCACCTGGgtgagttgtggaatttggccaggcacaacaggcaatatctgcacaaacgc #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Exonerate_coding2genome aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtaacctcacaggaacttctgcccctactttctggcagagagctctaggctgtgaatacaaactaggacctggatttgagccaaatgaaagtttccctgatggaaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagcaAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagcaAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtggcccctgcatttcccgtttcaggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtgccccccccactcccaccaccaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtggcccctgcatttcccgtttcagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtggcccctgcatttcccgtttcagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtggcccctgcatttcccgtttcagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtggcccctgcatttcccgtttcagGG Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGGTCAGTCACAGCATCCTGAGGCAGTGGCCCCTGCATTTCCCGTTTCAGGG #### Ndufb8_ID9058_3 --> 1 - 0 Original Alignment gTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAGGATGAAC------TGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagaTATGGTGATTATCCAATGCTCCCCAACCAATCG---------AGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc Alignment from CESAR gTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAGGATG------AACTGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagaTATGGTGATTATCCAATGCTCCCCAACCAATCG---------AGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc Alignment from Spaln_aa2Genome GTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAGG------ATGAACTGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagATATGGTGATTATCCAATGCTCCCCAACCAATCG---------AGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc Alignment from Spaln_nt2Genome GTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAGGATGAA------CTGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagATATGGTGATTATCCAATGCTCCCCAACCAATC---------GAGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc Alignment from Pairagon GTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAG------GATGAACTGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagATATGGTGATTATCCAATGCTCCCCAACCAATC---------GAGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc Alignment from Exonerate_protein2genome GTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAGG------ATGAACTGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagATATGGTGATTATCCAATGCTCCCCAACCAATCG---------AGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc Alignment from Exonerate_coding2genome GTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAGG------ATGAACTGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagATATGGTGATTATCCAATGCTCCCCAACCAATCG---------AGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc Alignment from GeneWise GTATGGCGACTACCCGATGCTCCCCAACCGATCACAGCATGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGAACTCAGGATG------AACTGGGGTGAACCG atttttacgggcctaaatccctttcctgatgttcgttatgtgtttaacagATATGGTGATTATCCAATGCTCCCCAACCAATCG---------AGGGATCCGTGGTATCAATGGGACCACTCAGAACTCAGGATGAAGATGAACTGGGGTGAACCAgtaggaacgatgccctagagagagagagtccctatcttatgcaagttttc #### Ndufb8_ID9059_2 --> 2 - 2 Original Alignment ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagccTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGgggtgaggatagtggctgactctgtggattattccagggtcagtttctacag Alignment from CESAR ccTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGgg cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagccTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGgggtgaggatagtggctgactctgtggattattccagggtcagtttctacag Alignment from Spaln_aa2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGGGgtgaggatagtggctgactctgtggattattccagggtcagtttctacag Alignment from Spaln_nt2Genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGGGgtgaggatagtggctgactctgtggattattccagggtcagtttctacag Alignment from Pairagon CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGGGgtgaggatagtggctgactctgtggattattccagggtcagtttctacag Alignment from Exonerate_protein2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGGGgtgaggatagtggctgactctgtggattattccagggtcagtttctacag Alignment from Exonerate_coding2genome CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGGGgtgaggatagtggctgactctgtggattattccagggtcagtttctacag Alignment from GeneWise CCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAGGACCCCAGAGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGCGAGTGGAAGACTACGAGCCATACCCCGATGATGGCATGGG cagggttgttgtgaacctttaaggactaaccctttgtccacctgtgacagCCTTCCATATGACCAAGGACATGGTACCAGGATCTTATCCTAGGACACCAGAGGAGCGTACCACGGCCACCAGGAAGTATAACATGCGAGTTGAGGAGTATGAGCCGTACCCCGATGATGGTATGGGgtgaggatagtggctgactctgtggattattccagggtcagtttctacag #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc #### Ndufv1_ID279_3 --> 1 - 2 Original Alignment g gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag ggtaagtcaaagctatgacctaggcaaagggtgggttttgtgccttttagaCTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTaggtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac Alignment from CESAR g gCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCag ggtaattcaaagctatgacctaggcaaagggtgggttttgtgccttttagaCTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTaggtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac Alignment from Spaln_aa2Genome G GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GgtaagtcaaagctatgacctaggcaaagggtgggttttgtgccttttagACTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTAGgtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac Alignment from Spaln_nt2Genome G GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GgtaagtcaaagctatgacctaggcaaagggtgggttttgtgccttttagACTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTAGgtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac Alignment from Pairagon G GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GgtaagtcaaagctatgacctaggcaaagggtgggttttgtgccttttagACTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTAGgtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac Alignment from Exonerate_protein2genome G GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GgtaagtcaaagctatgacctaggcaaagggtgggttttgtgccttttagACTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTAGgtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac Alignment from Exonerate_coding2genome G GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GgtaagtcaaagctatgacctaggcaaagggtgggttttgtgccttttagACTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTAGgtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac Alignment from GeneWise G GCTGAAAGGTGCCCTGAGACGGGGTGACTGGTACAAGACAAAGGAGATCCTGCTGAAGGGGCCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTACGGGGCCGTGGTGGTGCTGGCTTCCCCACTGGCCTCAAGTGGAGCTTCATGAATAAGCCCTCAGATGGCAG GgtaagtcaaagctatgacctaggcaaagggtgggttttgtgccttttagACTAAAAGATGCCCTAAGACGTGGTGATTGGTATCAGACAAAGGAAATCCTGCTAAAGGGACCTGACTGGATCTTGGGTGAGATGAAGACATCAGGTTTGCGAGGCCGTGGTGGGGCAGGCTTCCCCACAGGTCTCAAGTGGAGCTTCACAAATAAGCCATCAGATAGTAGgtaagatgaggagccaaatctgggccttggttacagagctccaatcgaac #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAggtaagaagaggacaggcaccttagatgtcatgactaagattagaggagac Alignment from CESAR CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAggtaagaagaggacaggcaccttagatgtcatgactaagattagaggagac Alignment from Spaln_aa2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtaagaagaggacaggcaccttagatgtcatgactaagattagaggagac Alignment from Spaln_nt2Genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtaagaagaggacaggcaccttagatgtcatgactaagattagaggagac Alignment from Pairagon CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtaagaagaggacaggcaccttagatgtcatgactaagattagaggagac Alignment from Exonerate_protein2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtaagaagaggacaggcaccttagatgtcatgactaagattagaggagac Alignment from Exonerate_coding2genome CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGgtaagaagaggacaggcaccttagatgtcatgactaagattagaggagac Alignment from GeneWise CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCC--------------------------------------------------------- gttagacactatgctgaggcctcaatcacctcctttctctgcttccacagTCAGCTGGTGGGGACCTGGTGGGCCTATTGGAGGCCTTATCTGACATGGGTCTTCATGAGGGATTCAGGCTTCTGAAAGGTCCAGAGACCCGTGACAAGCTACCCAGTAAAGGTAAGAAGAGGACAGGCACCTTAGATGTCATGACTAAGATTAGAGGAGAC #### Nhlrc2_ID12131_2 --> 2 - 1 Original Alignment gcTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAg aagttccacactcaactgtgttgctatacgagttttctgctttgccccaggtTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGggtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa Alignment from CESAR gcTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAg aagttccacactcaactgtgttgctatacgagttttctgctttgccccaggtTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGggtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa Alignment from Spaln_aa2Genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG aagttccacactcaactgtgttgctatacgagttttctgctttgccccagGTTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGGgtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa Alignment from Spaln_nt2Genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG aagttccacactcaactgtgttgctatacgagttttctgctttgccccagGTTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGGgtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa Alignment from Pairagon GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG aagttccacactcaactgtgttgctatacgagttttctgctttgccccagGTTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGGgtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa Alignment from Exonerate_protein2genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG aagttccacactcaactgtgttgctatacgagttttctgctttgccccagGTTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGGgtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa Alignment from Exonerate_coding2genome GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG aagttccacactcaactgtgttgctatacgagttttctgctttgccccagGTTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGGgtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa Alignment from GeneWise GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG aagttccacactcaactgtgttgctatacgagttttctgctttgccccagGTTTAGAACGGCTAAACACAGAAGAGCCTCTTTCCATTTACAAGGACCTGTGTGGAAAAGTAGTGGTGCTCTATTTTTTCACCTATTGCTGCATCAACTGTATCCATGTGCTCCCTGATCTCCATGCACTGGAGCGCAGATTTTCTGATAAGGgtgagcgcttcattctattcatcaggccaagtgggtttcatccataggaa #### Nhlrc2_ID12133_3 --> 2 - 1 Original Alignment atGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAg ccaactacttctgggttcacataatatctcctaaggtccttttcttctagatGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTggtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt Alignment from CESAR atGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAg ccaactacttctgggttcacataatatctcctaaggtccttttcttctagatGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTggtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt Alignment from Spaln_aa2Genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG ccaactacttctgggttcacataatatctcctaaggtccttttcttctagATGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTGgtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt Alignment from Spaln_nt2Genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG ccaactacttctgggttcacataatatctcctaaggtccttttcttctagATGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTGgtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt Alignment from Pairagon ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG ccaactacttctgggttcacataatatctcctaaggtccttttcttctagATGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTGgtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt Alignment from Exonerate_protein2genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG ccaactacttctgggttcacataatatctcctaaggtccttttcttctagATGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTGgtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt Alignment from Exonerate_coding2genome ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG ccaactacttctgggttcacataatatctcctaaggtccttttcttctagATGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTGgtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt Alignment from GeneWise ATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAACTATTTTCATATACGTCTATTGCTTTAAAGTATTACAAAGACAGGGGACAGATCAGAGATGGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAG ccaactacttctgggttcacataatatctcctaaggtccttttcttctagATGGTCTTCTGATTGTTGGAGTTCACTCAGCAAGGTTTCCCAATGAGAAGGTCCTGGATAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTCTGGTTAATGATGCAGATGCTAGCCTCTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAATACTGGTTATCCTAGGACCCCGTGGAAACCTGTTGTTTTCTTTGATTGGAGAGGGACACAGAGATAAGTTATTTTCATATACTTCTATTGCTTTAAAGTATTATAAAGACAGAGGACAGATAAGAGATGGCAAAATCGGAATAAAACTCTTCAGAGAGTCTCTGCCACCTTCACCTTTACTATTTCCTGGTAAAGTAGCAGTGGACCATGCTACGGGTCGTCTTGTGGTGGCGGACACAGGGCACCACAAGATCTTGGTCATCCAGAAAAATGGGCGCATTCAAAGTAGTATAGGTGgtaactccccctaccttccatgttgctgtggacaaatctgtgagatattt #### Nhlrc2_ID12135_5 --> 0 - 1 Original Alignment ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAg tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAggtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa Alignment from CESAR ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAg tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAggtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa Alignment from Spaln_aa2Genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa Alignment from Spaln_nt2Genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa Alignment from Pairagon ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa Alignment from Exonerate_protein2genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa Alignment from Exonerate_coding2genome ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa Alignment from GeneWise ATAGACCTGGAAGCTGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAG tgttgtggctgtactcactgtcttcacggataagattcttccaaccccagATAGACCTGGAAGCTGAAAAGGTGACAACTGTGGCTAGTGCTGGTATTCAAGGTACAGATACAGCAGGGGGTGAGGAGGGTGACAAGCAGCCAATCAGCTCCCAGTGGGATATTGCACTTGGGACCTCAGgtgagctggctcagtagaacatactggtgatgaaaaattggctctgcaaa #### Nhlrc2_ID12140_9 --> 0 - 0 Original Alignment ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg Alignment from CESAR ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg Alignment from Spaln_aa2Genome ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg Alignment from Spaln_nt2Genome ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg Alignment from Pairagon ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg Alignment from Exonerate_protein2genome ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg Alignment from Exonerate_coding2genome ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg Alignment from GeneWise ATTAAAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTG tctgcctagctgtacatgaaagtaatcttacttcttatcctttattgtagATTAAAGTTGTTGATCCAAAAAACAAAGGTTGTACAACATTAGCAGGGACTGGGGATGCAAGTGATGCCAGTTCCAGTTTTGCAGAATCTGCCTTTAATGAGCCTGGAGGTTTATGTATTGGTGAGGGTGGTCGACTGTTATATGTAGCTGATCCAAACAATCACCAAATTAAAGTGATAAAATTAGAATCAAGGACAGTTTCTGTGgtaagttatcatataggtacaggattttactgcaagagaagcatgcttgg #### Nmrk1_ID4437_3 --> 0 - 1 Original Alignment CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATg agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATggtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga Alignment from CESAR CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATg agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATggtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga Alignment from Spaln_aa2Genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga Alignment from Spaln_nt2Genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga Alignment from Pairagon CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga Alignment from Exonerate_protein2genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga Alignment from Exonerate_coding2genome CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga Alignment from GeneWise CCAGAGTCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATG agataaattacactataaggctcttggtcattgtgtgacaatttttccagTCAGAAGCTGAGATAGACATAGATGAAAATGGTTTTTTGCAGTATGATGgtgagtttgtaacatacaatgttaggttagggagatggctgcactgggga #### Nmrk1_ID4440_6 --> 1 - 1 Original Alignment tACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTg ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagtACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTggtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct Alignment from CESAR tACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTg ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagtACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTggtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct Alignment from Spaln_aa2Genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagTACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTGgtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct Alignment from Spaln_nt2Genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagTACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTGgtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct Alignment from Pairagon TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagTACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTGgtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct Alignment from Exonerate_protein2genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagTACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTGgtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct Alignment from Exonerate_coding2genome TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagTACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTGgtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct Alignment from GeneWise TACCAGAGTATATGAGCCTCCAGACCCTCCAGGGTACTTCGATGGCCACGTGTGGCCCATGTACCTAAAGCACAGACAGGAAATGAGCTCCATCACCTGGGACATTG ttaatcaattatcacattcaattgtaaccccctcttttttttaaaaaaagTACGAGGGTATATGATCCTCCAGACCCTCCAGGGTACTTTGACGGCCAACCTTGGCCCATGTACCTAAAGCACAGGCAGGAAATGAGTTCCATCACCTGGGATCTTGgtgagtccctgttgccccttttaccacttcaaggaattccttgcccatct #### Noc3l_ID7658_17 --> 2 - 0 Original Alignment gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcaggcACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca Alignment from CESAR gtGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcaggcACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca Alignment from Spaln_aa2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca Alignment from Spaln_nt2Genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca Alignment from Pairagon GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTC---TCAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca Alignment from Exonerate_protein2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca Alignment from Exonerate_coding2genome GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca Alignment from GeneWise GTGCCACCAACGACGGCATTGAGATTGTGCTCCACTGCCTCGATGTCATGCTAAGCAAGCGCAGAAAGCAGGTTTCTCATCAGCGAGCTCTTGCCTTCATCAAACGCCTTTGTACACTTGCTCTGCAGGTTCTTCCAAATTCAAGCATTGGCCTTTTAGCAACTACCAGGATATTGATGCAT gcaccactgaatataagaggtgatgaaccccctaaccccttcccatgcagGCACCACTAATGATGGCATAGAGATTGTGCTCCACTGCCTGGATGTCATGGTTAGCAAATGCAGAAAGCAAGTTTCT---CAGCGGGCTATTGCCTTCATCAAACGCCTTTGTACCCTAGCCTTGCAAGTTCTCCCAAATTCAAGCATTGGTCTTTTACCAACTACAAGGATATTGATGCATgtgaaacaaagtctaaagagagttaagctgtgcaggtcaaacaggctgca #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAggtgagtagtccatttggtctccctttcatttcactaaatttgttgtgatg Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAggtgagtagtccatttggtctccctttcatttcactaaatttcacccctct Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgttgtgatg Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgttgtgatg Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgttgtgatg Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgttgtgatg Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgttgtgatg Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgttgtgatg #### Noc3l_ID7667_8 --> 0 - 1 Original Alignment ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAg gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAggtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt Alignment from CESAR ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAg gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAggtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt Alignment from Spaln_aa2Genome ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAG gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAGgtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt Alignment from Spaln_nt2Genome ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAG gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAGgtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt Alignment from Pairagon ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAG gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAGgtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt Alignment from Exonerate_protein2genome ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAG gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAGgtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt Alignment from Exonerate_coding2genome ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAG gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAGgtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt Alignment from GeneWise ATTCGTAAAGAAACCCAGAAGTTAAGAGAATTTGAAGAAGGCCTGGTTAGCCAATACAAATTTTATTTGGAAAATCTGGAGCAAATAGTTAAAG gatctcttgaattctggtattgatggttggtcttcctccctgtcctgcagATCCATAAAGAAACCCATAAGTTAAGAGAATTTGAAGAAGGTTTGGTTAGTCAATATAAATTTTATTTGGAAAACCTGGAACAAATAGTCAAAGgtacaataaatttgcttgttttttcctgtttatataaacccagtggtgtt #### Noc3l_ID7668_7 --> 0 - 0 Original Alignment ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac Alignment from CESAR ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac Alignment from Spaln_aa2Genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac Alignment from Spaln_nt2Genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac Alignment from Pairagon ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac Alignment from Exonerate_protein2genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac Alignment from Exonerate_coding2genome ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac Alignment from GeneWise ATTAAAAAACTGAAAGAGTTGCGTTCCATGCTGATGGAGCAGGACCCTGATGTGGCTGTCACTGTCCGGAAGTTGGTTATCATCTCACTGATGGAGCTGTTTAAGGACATCACTCCCTCGTATAAAATCCGGCCTCTAACCGAAGCAGAAAAATCTACCAAG ctagagttttttttggccattcttgcaaactgtttcctttggtttgatagGTGAAGAAACTGAAAGAGCTGCGCTCCATGCTGATGGAGCAGGATCCTGATGTGGCTGTAACTGTGTGTAAGCTGGTTATCATCTCTCTGATGGAGCTCTTCAAGGATATCTCTCCCTCATATAAGATCCGACCTCTAACTGAAGCAGAAAAATCCATCAAAgtgagacctggatctgccatgaatggtgaacacaaggccattgatttaac #### Noc3l_ID7669_6 --> 2 - 0 Original Alignment agGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagaaGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGAA------ATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca Alignment from CESAR agGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagaaGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGAA------ATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca Alignment from Spaln_aa2Genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagAAGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGAA------ATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca Alignment from Spaln_nt2Genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagAAGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGA------AATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca Alignment from Pairagon AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagAAGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGA------AATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca Alignment from Exonerate_protein2genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagAAGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGAA------ATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca Alignment from Exonerate_coding2genome AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagAAGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGAA------ATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca Alignment from GeneWise AGGTCATTGAAGACCCCAGGAAGGAGCTGACCATAGAAGAGCATGTGATCGAGAGAAAGAAGAAACTGCAGGACAAGAAAATACAGATTGCAGCCTTAGCATCTGCTATTCTGTCAGATCCAGAAAGTCAT tatgggtctcattcacatccatagcactatgttcaccgctgagttcacagAAGTTATTGAAGATCCAAGGAAGGAGTTCGCCATAGAAGAA------ATTGAGAGAACAACAGAGCTGCAAGACAAAAAGATGCAGATCACAGCCTTAGCATCTGCTATACCATCAGACCCAGAGAGTCATgtaatcagcttatgtaaggcaaagagtgtgattaaagtatgggttatgca #### Noc3l_ID7671_4 --> 1 - 1 Original Alignment tGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGg ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagtGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAggtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat Alignment from CESAR tGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGg ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagtGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAggtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat Alignment from Spaln_aa2Genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagTGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAGgtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat Alignment from Spaln_nt2Genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagTGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAGgtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat Alignment from Pairagon TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagTGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAGgtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat Alignment from Exonerate_protein2genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagTGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAGgtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat Alignment from Exonerate_coding2genome TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCGG ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagTGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAGgtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat Alignment from GeneWise TGAACCAGTCCATATCAAGAAACGAAAGCATGAGAGTGTGATAGAGAAATATGAAAAAGTGCCAAGAACTCTGCAAACCGCACCGGAGAAGGAGTTGATTCACCTGCTCCCTATCAAGGACAAGAGTGGCATCATCCCTCAGGCTCGGGAGAAGCCG- ctctcagctccgttgacatcacaaaaaatttttcctaactggactcacagTGAACCAGTTGACATCAAGAAACGAAATCATGAAAGTGTGATAGAAAAATATGAAAAAGTACCAAGAACTTTACAGACTGCTCCTGAAAAGGAGTTGAACCACCTGTTGCTTATCAAGGACAAGAGTGGAATTATCCCCCAGGCTCGGGAGAAGCCAGgtaggactcgtggatttcagcttacacacactctatgctaaatgtacaat #### Noc3l_ID7672_3 --> 2 - 2 Original Alignment ttAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTag agagagggaaaaacacactagtctaatttgacacccggtgctttttctagttAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAaggtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt Alignment from CESAR ttAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTag agagagggaaaaacacactagtctaatttgacacccggtgctttttctagttAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAaggtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt Alignment from Spaln_aa2Genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG agagagggaaaaacacactagtctaatttgacacccggtgctttttctagTTAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAAGgtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt Alignment from Spaln_nt2Genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG agagagggaaaaacacactagtctaatttgacacccggtgctttttctagTTAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAAGgtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt Alignment from Pairagon TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG agagagggaaaaacacactagtctaatttgacacccggtgctttttctagTTAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAAGgtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt Alignment from Exonerate_protein2genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG agagagggaaaaacacactagtctaatttgacacccggtgctttttctagTTAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAAGgtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt Alignment from Exonerate_coding2genome TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG agagagggaaaaacacactagtctaatttgacacccggtgctttttctagTTAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAAGgtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt Alignment from GeneWise TTAAAAGGATGGAGAGGGAGGAGGACGAGGAGGAAGAAGCCCTGCCTTTGGATATGATGGACGAGGATGACCTACAGCTGATGAAGGATTTAGGACAAAAGGCATCTTTTCTCACAAGAGATCTCTCTTCTAG agagagggaaaaacacactagtctaatttgacacccggtgctttttctagTTAAAAGGATGGAGAGGGAGGAAGACAAGGAGGAAGAGGTCCTGCCTTTGGATATGATGGATGAGGATGACCTACAGTTGACGAAAGATTTAGGACAAAAGGCATCTTTTCTTACACGAGGTCTCTCTTCAAGgtactcgtccaccacagcttgggtgcaaacacttagttctataagtcatt #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagtGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGcgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from CESAR tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagtGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGcgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Spaln_aa2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Spaln_nt2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Pairagon TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Exonerate_protein2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Exonerate_coding2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from GeneWise TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata #### Npas4_ID779_2 --> 2 - 0 Original Alignment gcACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagggACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac Alignment from CESAR gcACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagggACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac Alignment from Spaln_aa2Genome GCACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagGGACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac Alignment from Spaln_nt2Genome GCACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagGGACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac Alignment from Pairagon GCACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagGGACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac Alignment from Exonerate_protein2genome GCACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagGGACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac Alignment from Exonerate_coding2genome GCACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagGGACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac Alignment from GeneWise GCACTCCTTTGGCTGGCCCCACCGGGCTTCTCTCTGCTCAAGAGCTTGAAGACATTGTGGCAGCACTACCTGGATTTCTCCTTGTATTCACAGCTGAGGGGAAGTTGCTATACCTGTCGGAGAGTGTGAGCGAGCATCTGGGCCACTCTATG ccaacctccttaggactgacccaaacaccattgttttccttgtgtttcagGGACTCCTTTAGCTGGCCCAACTGGGCTTCTTTCTGCCCAAGAGCTTCAAGACATTGTTGGCACACTACCTGGATTCCTCCTCGTTTTCACTGCTGAGGGGAAGTTTTTGTACCTCTCCAAGAGTGTGAGTGAGCATTTGGGGTACTCAATGgtgagtactagagctatctatttggctaaaaacggtgcaagagataaaac #### Nrxn2_ID1733_2 --> 2 - 1 Original Alignment agGAACACCCCATGGAAg agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagaaGAACACCCCATGGAGggtgagtgtgccctcctttcatcaatgtctttcatagatctccatgagatc Alignment from CESAR agGAACACCCCATGGAAg agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagaaGAACACCCCATGGAGggtgagtgtgccctcctttcatcaatgtctttcatagatctccatgagatc Alignment from Spaln_aa2Genome AGGAACACCCCATGGAAG agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagAAGAACACCCCATGGAGGgtgagtgtgccctcctttcatcaatgtctttcatagatctccatgagatc Alignment from Spaln_nt2Genome AGGAACACCCCATGGAAG agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagAAGAACACCCCATGGAGGgtgagtgtgccctcctttcatcaatgtctttcatagatctccatgagatc Alignment from Pairagon AGGAACACCCCATGGAAG agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagAAGAACACCCCATGGAGGgtgagtgtgccctcctttcatcaatgtctttcatagatctccatgagatc Alignment from Exonerate_protein2genome AGGAACACCCCATGGAAG agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagAAGAACACCCCATGGAGGgtgagtgtgccctcctttcatcaatgtctttcatagatctccatgagatc Alignment from Exonerate_coding2genome AGGAACACCCCATGGAAGGTCC agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagAAGAACACCCCATGGAGGGTGAgtgtgccctcctttcatcaatgtctttcatagatctccatgagatc Alignment from GeneWise agcgagtggtgatatctcctgctgtccttcttcctcctttctgtctacagaagaacaccccatggagggtgagtgtgccctcctttcatcaatgtctttcatagatctccatgagatc #### Nrxn2_ID1777_19 --> 2 - 1 Original Alignment gaAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAg ccaaagccactggactgatttagaggcctattcacatctttcctttccaggaAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGggtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag Alignment from CESAR gaAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAg ccaaagccactggactgatttagaggcctattcacatctttcctttccaggaAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGggtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag Alignment from Spaln_aa2Genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG ccaaagccactggactgatttagaggcctattcacatctttcctttccagGAAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag Alignment from Spaln_nt2Genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG ccaaagccactggactgatttagaggcctattcacatctttcctttccagGAAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag Alignment from Pairagon GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG ccaaagccactggactgatttagaggcctattcacatctttcctttccagGAAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag Alignment from Exonerate_protein2genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG ccaaagccactggactgatttagaggcctattcacatctttcctttccagGAAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag Alignment from Exonerate_coding2genome GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG ccaaagccactggactgatttagaggcctattcacatctttcctttccagGAAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag Alignment from GeneWise GAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTAGATGAGTGGCTGCTCGACAAAG ccaaagccactggactgatttagaggcctattcacatctttcctttccagGAAACTTTGATAATGAGCACCTGGCAATCGCCAGGCAGAGAATTCCCTACCGGCTCGGTCGAGTAGTAGATGAGTGGCTGCTTGACAAGGgtaaggagacaaaagccagtagataattagaggaacatcttgaaagggag #### Nrxn2_ID1781_20 --> 2 - 0 Original Alignment gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag Alignment from CESAR gaCGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagggCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag Alignment from Spaln_aa2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag Alignment from Spaln_nt2Genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag Alignment from Pairagon GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag Alignment from Exonerate_protein2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag Alignment from Exonerate_coding2genome GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag Alignment from GeneWise GACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGCGCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCCGTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAG ttaaccttaacccttcttggccccccagcctttctttgatgctgtttcagGGCGCCAGTTAACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGGGCCGGGATCAGGGTCGTCCCTTCCAGGGCCAGGTGTCTGGCCTGTACTACAATGGGCTCAAGGTACTGGCCCTGGCTGCAGAGAGTGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTCGGGGAGGGGCTGTCCGTGTTGCTCAGTGCTGAGACCACTGGCACCACTCTGCTGGCTGACATGGCCACCACCATCATGGAGACCACCACCACCATGGCCACTACCAGTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGgtgaggactctatatggatcgtgcacaggctcatcctgggctgggttgag #### Nt5c2_ID10042_11 --> 0 - 0 Original Alignment AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagAAAATTATGACTTACCTCTTTTATTTCCCACATGGTCCTAAGgtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat Alignment from CESAR AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagAAAATTATGACTTACCTCTTTTATTTCCCACATGGTCCTAAGgtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat Alignment from Spaln_aa2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagAAAATTATGACTTACCTCTTTTATTTCCCACATGGTCCTAAGgtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat Alignment from Spaln_nt2Genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagAAAATTATGACTTACCTCTTTTATTTCCCACATGGTCCTAAGgtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat Alignment from Pairagon AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagAAAATTATGACTTACCTCTTTTATTTCCCACATGGTCCTAAGgtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat Alignment from Exonerate_protein2genome AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagAAAATTATGACTTACCTCTTTTATTTCCCACATGGTCCTAAGgtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat Alignment from Exonerate_coding2genome acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagaaaattatgacttacctcttttatttcccacatggtcctaaggtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat Alignment from GeneWise AAAATCATGACTTACCTGTTTGATTTCCCGCATGGCCCCAAG acctttgttgtcgtcttaggagcagttagacatgtcattctcctctgtagAAAATTATGACTTACCTCTTTTATTTCCCACATGGTCCTAAGgtaaactagacttggtcaagctgacttcctatcatcttgtattaattaat #### Nxf1_ID2342_2 --> 2 - 2 Original Alignment agCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGAta taaatagtaacttaccctcagagtgttttaaaattcttgtttcccttcagagCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGAtagtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac Alignment from CESAR agCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGAta taaatagtaacttaccctcagagtgttttaaaattcttgtttcccttcagagCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGAtagtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac Alignment from Spaln_aa2Genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatagtaacttaccctcagagtgttttaaaattcttgtttcccttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac Alignment from Spaln_nt2Genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatagtaacttaccctcagagtgttttaaaattcttgtttcccttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac Alignment from Pairagon AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatagtaacttaccctcagagtgttttaaaattcttgtttcccttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac Alignment from Exonerate_protein2genome AGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatagtaacttaccctcagagtgttttaaaattcttgtttcccttcagAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac Alignment from Exonerate_coding2genome AACGAGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA taaatagtaacttaccctcagagtgttttaaaattcttgtttccctTCAGAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac Alignment from GeneWise GCGGACGAAGGGAAGTCATACAACGAGCATGATGACCGTGTTAGTTTCCCTCAAAGAAGAAAGAAAGGCCGGGGGCCTTTCCGATGGAAGTGTGGTGAGGGGAATCGTAGGTCTGGAAGAGGTGGTTCTGGTGTACAGTCTTCCCGATTTGAGGAAGATGATGGCGATGTAGCAATGAATGATCCCCAGGATGGCCCCCGAGTAAGATA agtgttttaaaattcttgtttccct---------------------TCAGAGCATGATGATCGTGTTAGTTTTCACCAAAGAAGAAAGAAAGGTCGGGGGCCTTTTCGGTGGAAATGTGGTGAGGGGAACCGTGGGTCTGGGAGAGGTGGTTCTGGTGTACAGTCCTCAAGATTTGAGGAAGAAGATGGTGATGTGGCAATGACTGACCCACAGGATGGACCACAAGTTAGATAgtcagtcatgcccaacttcattgctaagtcatctgttggtatatgaaaac #### Nxf1_ID2343_3 --> 1 - 0 Original Alignment cAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagcAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa Alignment from CESAR cAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagcAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa Alignment from Spaln_aa2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagCAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa Alignment from Spaln_nt2Genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagCAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa Alignment from Pairagon CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagCAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa Alignment from Exonerate_protein2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagCAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa Alignment from Exonerate_coding2genome CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagCAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa Alignment from GeneWise CAATCCCTATACCAACCGGCCTAATCGTCGGGGAGATGGTTGGCATGATCGAGATCGAATTCATATTACTGTACGGAGAGACAGAGCTCCTGCAGAGAGAGGAGGGGCTGGCACCAGTCAAGATGGGACCACCAAGAACTGGTTCAAGATTACA cctctagcttgatgcatgtggaaacagaccaagtactcttgtgcttatagCAATCCATATATGAACTGGCCTAATCGT------GATGGTTGGCACGATCGGGATAAGATCCATATTACAGTACGGAGAGATACGGCTCCT---------GGTGGGGTTGGCACAAGTCAAGATGGGACTACCAAAAATTGGTTTAAAATAACGgtaagtattaatgtgagagatacagaaaaattgtcttgactcagtagaaa #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac Alignment from Pairagon ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG atcagaggtctgaaataagttatgtgtccttggtcttgttgcccttccagATACCCTATGGTAAAAAGCATGACAAAACTTGGCTTCTCAGCATGATTCAGAGCAAATGTAGTGTCCCTTTCAACCCCATTGAGgtaagtaaaatagagccagatttgagcagctgatgatggatgtggggtac #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAggtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAg ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAggtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct Alignment from Pairagon CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagtcatctaaagtgtctggtggggttcctccagATTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTGGACCTTAAGGAGCTTCGCTCAGACCCAGgtacggcatgcctcagtagatcagattattgaggtgggagggctgggtct #### Nxf1_ID2351_11 --> 1 - 0 Original Alignment cGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagtGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg Alignment from CESAR cGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagtGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg Alignment from Spaln_aa2Genome CGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagTGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg Alignment from Spaln_nt2Genome CGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagTGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg Alignment from Pairagon CGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagTGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg Alignment from Exonerate_protein2genome CGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagTGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg Alignment from Exonerate_coding2genome CGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagTGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg Alignment from GeneWise CGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTG tgacttcttaagagcccacaggctgtgctccttctgttggcttcccgcagTGCTATTCGAGAAAGATTTCCCAAGTTATTACGCCTGgtattgaatgccttaccgcagttccctgaaataggaacagctgaggtccg #### Oosp1_ID3263_4 --> 1 - 2 Original Alignment tCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAaa gcctcaggccaagggtaatagtcatcttaatgtatttaatgtacttttagtCTGAGTCCTCATTTTTGTGAAGTGGAAAGTAAAGGAGATTTTACACAGGATCCTCCTGGTTGGACAGAAGATATGCGGGCAAGAAGAGACAAGCAAACTGTTCCAATGGTACAACCAaagtaaggggtaccaagtgactcaaatttgcctaggaaaaaaatagggaaaa Alignment from CESAR tCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAaa gcctcaggccaagggtaatagtcatcttaatgtatttaatgtacttttagtCTGAGTCCTCATTTTTGTGAAGTGGAAAGTAAAGGAGATTTTACACAGGATCCTCCTGGTTGGACAGAAGATATGCGGGCAAGAAGAGACAAGCAAACTGTTCCAATGGTACAACCAaagtaaggggtaccaagtgactcaaatttgcctaggaaaaaaatagggaaaa Alignment from Spaln_aa2Genome TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA gcctcaggccaagggtaatagtcatcttaatgtatttaatgtacttttagTCTGAGTCCTCATTTTTGTGAAGTGGAAAGTAAAGGAGATTTTACACAGGATCCTCCTGGTTGGACAGAAGATATGCGGGCAAGAAGAGACAAGCAAACTGTTCCAATGGTACAACCAAAgtaaggggtaccaagtgactcaaatttgcctaggaaaaaaatagggaaaa Alignment from Spaln_nt2Genome TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA gcctcaggccaagggtaatagtcatcttaatgtatttaatgtacttttagTCTGAGTCCTCATTTTTGTGAAGTGGAAAGTAAAGGAGATTTTACACAGGATCCTCCTGGTTGGACAGAAGATATGCGGGCAAGAAGAGACAAGCAAACTGTTCCAATGGTACAACCAAAgtaaggggtaccaagtgactcaaatttgcctaggaaaaaaatagggaaaa Alignment from Pairagon TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA gcctcaggccaagggtaatagtcatcttaatgtatttaatgtacttttagTCTGAGTCCTCATTTTTGTGAAGTGGAAAGTAAAGGAGATTTTACACAGGATCCTCCTGGTTGGACAGAAGATATGCGGGCAAGAAGAGACAAGCAAACTGTTCCAATGGTACAACCAAAgtaaggggtaccaagtgactcaaatttgcctaggaaaaaaatagggaaaa Alignment from Exonerate_protein2genome TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA gcctcaggccaagggtaatagtcatcttaatgtatttaatgtacttttagTCTGAGTCCTCATTTTTGTGAAGTGGAAAGTAAAGGAGATTTTACACAGGATCCTCCTGGTTGGACAGAAGATATGCGGGCAAGAAGAGACAAGCAAACTGTTCCAATGGTACAACCAAAgtaaggggtaccaagtgactcaaatttgcctaggaaaaaaatagggaaaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCAGAGTCCTCATTTCTGTGAAGCAGAAAGTAGAGGAGATTTCACTGGTGATCCTCCTGGATGGACAGAAGATATGAGGGCAAGAAGAGATGAGCAAACTGTTCCGATGGTGCAACCAAA gcctcaggccaagggtaatagtcatcttaatgtatttaatgtacttttagTCTGAGTCCTCATTTTTGTGAAGTGGAAAGTAAAGGAGATTTTACACAGGATCCTCCTGGTTGGACAGAAGATATGCGGGCAAGAAGAGACAAGCAAACTGTTCCAATGGTACAACCAAAgtaaggggtaccaagtgactcaaatttgcctaggaaaaaaatagggaaaa #### Oosp1_ID3265_2 --> 2 - 0 Original Alignment ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtatcatgtggtgatcccaaagaaaactcccttttctgtggccacagccATTAGTCTGCAATGTGCTGACCATTGGTTCCATCTAAGGATTAGGTCTACAACATTCCACAACGTCTACATGGAACCTGATGAAGTTTTTCTAGGTATTGGTTGTCCTGTGACTACCACATGGCCAAATGACACCTACGAATTTATCTATAGGACTTACTCTTGTGGCATTGCCAATAAAgtaaggaaggagcagctatctcaatagctctctaaaatttacatgactag Alignment from CESAR ccATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtatcatgtggtgatcccaaagaaaactcccttttctgtggccacagccATTAGTCTGCAATGTGCTGACCATTGGTTCCATCTAAGGATTAGGTCTACAACATTCCACAACGTCTACATGGAACCTGATGAAGTTTTTCTAGGTATTGGTTGTCCTGTGACTACCACATGGCCAAATGACACCTACGAATTTATCTATAGGACTTACTCTTGTGGCATTGCCAATAAAgtaaggaaggagcagctatctcaatagctctctaaaatttacatgactag Alignment from Spaln_aa2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtatcatgtggtgatcccaaagaaaactcccttttctgtggccacagCCATTAGTCTGCAATGTGCTGACCATTGGTTCCATCTAAGGATTAGGTCTACAACATTCCACAACGTCTACATGGAACCTGATGAAGTTTTTCTAGGTATTGGTTGTCCTGTGACTACCACATGGCCAAATGACACCTACGAATTTATCTATAGGACTTACTCTTGTGGCATTGCCAATAAAgtaaggaaggagcagctatctcaatagctctctaaaatttacatgactag Alignment from Spaln_nt2Genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtatcatgtggtgatcccaaagaaaactcccttttctgtggccacagCCATTAGTCTGCAATGTGCTGACCATTGGTTCCATCTAAGGATTAGGTCTACAACATTCCACAACGTCTACATGGAACCTGATGAAGTTTTTCTAGGTATTGGTTGTCCTGTGACTACCACATGGCCAAATGACACCTACGAATTTATCTATAGGACTTACTCTTGTGGCATTGCCAATAAAgtaaggaaggagcagctatctcaatagctctctaaaatttacatgactag Alignment from Pairagon CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtatcatgtggtgatcccaaagaaaactcccttttctgtggccacagCCATTAGTCTGCAATGTGCTGACCATTGGTTCCATCTAAGGATTAGGTCTACAACATTCCACAACGTCTACATGGAACCTGATGAAGTTTTTCTAGGTATTGGTTGTCCTGTGACTACCACATGGCCAAATGACACCTACGAATTTATCTATAGGACTTACTCTTGTGGCATTGCCAATAAAgtaaggaaggagcagctatctcaatagctctctaaaatttacatgactag Alignment from Exonerate_protein2genome CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtatcatgtggtgatcccaaagaaaactcccttttctgtggccacagCCATTAGTCTGCAATGTGCTGACCATTGGTTCCATCTAAGGATTAGGTCTACAACATTCCACAACGTCTACATGGAACCTGATGAAGTTTTTCTAGGTATTGGTTGTCCTGTGACTACCACATGGCCAAATGACACCTACGAATTTATCTATAGGACTTACTCTTGTGGCATTGCCAATAAAgtaaggaaggagcagctatctcaatagctctctaaaatttacatgactag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCATTAGTCTGCAATGTGCCGACCACTGGTTCCATCTAAGGATCAGGCCTACGATATTTCACAACATTTTTATGGAACCCGATGAAGTGTTTTTAGGAATTGGCTGCCCTGTGACCACTACCTGGCCAAATGATACCTATGAATTTATCTACCGGACTTACTCCTGCGGCATTGCCAATAAA ccagtatcatgtggtgatcccaaagaaaactcccttttctgtggccacagCCATTAGTCTGCAATGTGCTGACCATTGGTTCCATCTAAGGATTAGGTCTACAACATTCCACAACGTCTACATGGAACCTGATGAAGTTTTTCTAGGTATTGGTTGTCCTGTGACTACCACATGGCCAAATGACACCTACGAATTTATCTATAGGACTTACTCTTGTGGCATTGCCAATAAAgtaaggaaggagcagctatctcaatagctctctaaaatttacatgactag #### Oosp3_ID3273_5 --> 1 - 0 Original Alignment tGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagtGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat Alignment from CESAR tGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagtGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat Alignment from Spaln_aa2Genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagTGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat Alignment from Spaln_nt2Genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagTGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat Alignment from Pairagon TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagTGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat Alignment from Exonerate_protein2genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagTGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat Alignment from Exonerate_coding2genome TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagTGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat Alignment from GeneWise TGAATCTATTGATGTGGGTAACCTAGACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAGAGATACTGCATTATTTGTGGCCATTTCCATTTCCCAAATAACTGG tcttagtcctgatgacattacacttctgaagtcctttacttctatttcagTGAGTCTATTGATGTGGGGAACCTGCACTTCCACCCTCCTCCTCAATGCTGGTTCCTGGTACTGAAAAGATATTGTGTTATCTGTGGCCATTTCCATTTCCCCAACAACTGGgtgagacttatccatgagccactttagttgaagtgatggccaaggtcaat #### Osbp_ID3343_2 --> 1 - 1 Original Alignment gTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATG---CTGGCCGAATCAg ggctaatacttacattgtttggtattgctgggtccttctcttctgagcaggTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAggtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt Alignment from CESAR gTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAg ggctaatacttacattgtttggtattgctgggtccttctcttctgagcaggTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAggtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt Alignment from Spaln_aa2Genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG ggctaatacttacattgtttggtattgctgggtccttctcttctgagcagGTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt Alignment from Spaln_nt2Genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTGG---CCGAATCAG ggctaatacttacattgtttggtattgctgggtccttctcttctgagcagGTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt Alignment from Pairagon GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGA---TGCTGGCCGAATCAG ggctaatacttacattgtttggtattgctgggtccttctcttctgagcagGTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt Alignment from Exonerate_protein2genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG ggctaatacttacattgtttggtattgctgggtccttctcttctgagcagGTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt Alignment from Exonerate_coding2genome GTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG ggctaatacttacattgtttggtattgctgggtccttctcttctgagcagGTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt Alignment from GeneWise -AGGTCCAAGGCAGAGATGAGACACACCTGCCGAGGTACCATCAACCTCGCCACAGCCAACATCACTGTGGAGGACTCTTGCAACTTCATCATCTCCAATGGCGGTGCTCAGACCTACCACTTGAAGGCCAGCTCCGAAGTAGAGCGTCAGCGCTGGGTGACAGCCTTAGAACTGGCCAAGGCCAAGGCTGTGAAGATGCTG---GCCGAATCAG ggctaatacttacattgtttggtattgctgggtccttctcttctgagCAGGTCCAAGGCAGAGATGCGACACACCTGCCAGGGTACAATTAACCTTGCTACAGCTAATATCAGTGTTGAAGACCCGTGCAACTTCATCATCTCCAATGGTGGCGCTCAAACTTACCATTTAAAAGCTAGCTCTGAAGTAGAATGTCAGCACTGGGTGACAGCTCTAGAATTAGCGAGAGCCAAGGCTGTGAAGATCCTGGTGGCTGAATCAGgtaagaaacgctgggctgggagggatacgctagtcagatgttggagtggt #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACaagtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACaagtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt #### Osbp_ID3353_12 --> 0 - 2 Original Alignment GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTAcc acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTActgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact Alignment from CESAR GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTAcc acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTActgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact Alignment from Spaln_aa2Genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTACTgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact Alignment from Spaln_nt2Genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTACTgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact Alignment from Pairagon GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTACTgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact Alignment from Exonerate_protein2genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTACTgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact Alignment from Exonerate_coding2genome GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTACTgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact Alignment from GeneWise GTGACAGGTGAAGTGACAGACCCATCAGGAAAAGTTCACTTTGCCCTCCTGGGGACATGGGATGAGAAAATGGATTGTTTCAAAGTACAGGCAGCCTCCGGGGAGAATGGGGGTGATGCTCGGCAGAGAGGCCATGAAGCAGAAGACAGCAGGGTCATGCTGTGGAAGAGGAACCCATTACC acaaccagcttgcttttattgtgtcttaaccagtggaactttctccacagGTAACAGGTGAGGTGACAGAGCCATCAGGAAAAGTACACTTTGCCCTTTTAGGAACCTGGGATGAGAAAATGGATTGTTTCAAGGTACAGGCAGCCTCCAGGGAGAATGGGGGTGATGCTCAGCAGAGGGGCCATGAAGCAGAAGATAGCAGGGTCATGCTGTGGAAAAGGAACCCATTACTgtgagtatggcctatgcttaccgtgcagactgataattatcataaaaact #### Ostf1_ID4423_7 --> 2 - 0 Original Alignment acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagacATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc Alignment from CESAR acATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagacATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc Alignment from Spaln_aa2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc Alignment from Spaln_nt2Genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc Alignment from Pairagon ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAG--- ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc Alignment from Exonerate_protein2genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc Alignment from Exonerate_coding2genome ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAAC---CAGCAG ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc Alignment from GeneWise ACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAGCTGAACCAGCAGAAT ctagaaatgctccctagaaatagtcgcatcacagctccctttgttctcagACATAGTGGAGGTGCTGTTTACTCAACCAAATGTGGAATTGAACCAGCAGCAAgtgagttgaaatataccttcatagtattgcttacaaaccagctaaggtcc #### Ostf1_ID4424_6 --> 2 - 1 Original Alignment gcAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAg caggcttttagataaactggcctggtgttcttctcactttcttttaataggtAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGggtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca Alignment from CESAR gcAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAg caggcttttagataaactggcctggtgttcttctcactttcttttaataggtAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGggtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca Alignment from Spaln_aa2Genome GCAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAG caggcttttagataaactggcctggtgttcttctcactttcttttaatagGTAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGGgtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca Alignment from Spaln_nt2Genome GCAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAG caggcttttagataaactggcctggtgttcttctcactttcttttaatagGTAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGGgtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca Alignment from Pairagon GCAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAG caggcttttagataaactggcctggtgttcttctcactttcttttaatagGTAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGGgtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca Alignment from Exonerate_protein2genome GCAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAG caggcttttagataaactggcctggtgttcttctcactttcttttaatagGTAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGGgtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca Alignment from Exonerate_coding2genome GCAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAG caggcttttagataaactggcctggtgttcttctcactttcttttaatagGTAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGGgtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca Alignment from GeneWise GCAACCTGAGCTGGTTGAGGGAGTGCTTGGACAACCGGGTGGGTGTGAACGGCCTGGACAAAGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCATAAAG caggcttttagataaactggcctggtgttcttctcactttcttttaatagGTAACCTGACCTGGTTGAAGGAGTGCTTTGACAACCGGGTAGGTGTGAATGGCTTGGATAAAGCTGGTAGTATGGCCTTATACTGGGCCTGCCATGGTGGCCAAAAGGgtaagtgagtcagtgatgatgagcattttttcatgtggtttttggttgca #### Ostf1_ID4427_3 --> 0 - 0 Original Alignment CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag Alignment from CESAR CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag Alignment from Spaln_aa2Genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag Alignment from Spaln_nt2Genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag Alignment from Pairagon CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag Alignment from Exonerate_protein2genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag Alignment from Exonerate_coding2genome CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag Alignment from GeneWise CCAGATGAATTATACTTTGAAGAAGGAGACATTATCTACATCACTGACATG aaggtcaaatggtagtcatttgtgccactcctttgtaaatcccctcccagCCAGATGAATTATACTTTGAAGAAGGAGACATAATCTACATCACTGACATGgtgagtgtgaagactctatgcaataactgcattctataaaatgaattgag #### Otub1_ID2064_2 --> 2 - 0 Original Alignment gtGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtaggtGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag Alignment from CESAR gtGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtaggtGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag Alignment from Spaln_aa2Genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag Alignment from Spaln_nt2Genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag Alignment from Pairagon GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag Alignment from Exonerate_protein2genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag Alignment from Exonerate_coding2genome GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag Alignment from GeneWise GTGTTAACTGTTTGGCCTATGATGAAGCCATTATGGCTCAGCAGGACCGAATTCAGCAAGAG gaaccagacatcataggaaacctggattccgtgtgtgtccctctctgtagGTGTTAATTGTTTAGCATATGATGAAAGTATTATGGCTCAGCAGGACCGAATTCAGCAAGAGgtaggtcagggcagaagggagaaggggtgttggtaactgaggacaatcag #### Pacs1_ID882_12 --> 0 - 2 Original Alignment GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCag atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCaggtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac Alignment from CESAR GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCag atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCaggtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac Alignment from Spaln_aa2Genome GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAG atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCAGgtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac Alignment from Spaln_nt2Genome GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAG atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCAGgtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac Alignment from Pairagon GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAG atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCAGgtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac Alignment from Exonerate_protein2genome GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAG atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCAGgtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac Alignment from Exonerate_coding2genome GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAG atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCAGgtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac Alignment from GeneWise GAAATCACTGACCAGGACATGTTTGGAGATGTGAGCACAAGTCTGGTTGTACCAGAAAAAGTCAAAACTCCTATGAAGTCCAGCAAAGCTGATCTGCAGGGCTCTGCCTCTCCCAG atgaagaattatgaagtaagtgacctttctccggtttctttctcctccagGAGATCACTGACCAGGACATGTTCGGAGATGTGAGTACAAGTTTAGTTGTACCAGAAAAAGTGAAAACTCCTATGAAATCAAGCAAAGCTGATTTACAAGGCTCTACTTCTCCCAGgtaaactgatgaaccagaacatacatatgtaccaagcaatagatcagtac #### Pacs1_ID886_8 --> 0 - 0 Original Alignment CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac Alignment from CESAR CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac Alignment from Spaln_aa2Genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac Alignment from Spaln_nt2Genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac Alignment from Pairagon CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac Alignment from Exonerate_protein2genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac Alignment from Exonerate_coding2genome CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac Alignment from GeneWise CAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAACGATTCAAAGTTTCTGACGAG tctgagcaatatgtatctcaagaatgatatagcctttttctatttttcagCAACCAAACATTAAACAGAAGTTTGTGGCTCTCTTGAAACCATTCAAAGTTTCAGATGAGgtaaggtattttgtttccattcttacccctagcaactaggctgacatgac #### Pacs1_ID889_5 --> 0 - 1 Original Alignment GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTg accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTggtatgttgattttgagtggatctggtctcattctgctgctgagaatataa Alignment from CESAR GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTg accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTggtatgttgattttgagtggatctggtctcattctgctgctgagaatataa Alignment from Spaln_aa2Genome GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTG accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTGgtatgttgattttgagtggatctggtctcattctgctgctgagaatataa Alignment from Spaln_nt2Genome GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTG accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTGgtatgttgattttgagtggatctggtctcattctgctgctgagaatataa Alignment from Pairagon GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTG accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTGgtatgttgattttgagtggatctggtctcattctgctgctgagaatataa Alignment from Exonerate_protein2genome GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTG accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTGgtatgttgattttgagtggatctggtctcattctgctgctgagaatataa Alignment from Exonerate_coding2genome GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTG accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTGgtatgttgattttgagtggatctggtctcattctgctgctgagaatataa Alignment from GeneWise GTGATGCAACACCCTAATGAGGGCGCTTTAGTACTTGGCCTGCACAGCAATGTGAAGGATGTCTCTGTGCCAGTGGCAGAAATAAAAATCTACTCTTTATCCAGCCAGCCCATTGACCATGAAGGAATCAAGTCTAAGCTGTCTG accagtgccataacactattgccaggtatgaagtcatgtttctcttgcagGTGATGGAACACCCAAACGAGGATGCTCTATCACTTGGCCTGCACAGCAATGTGAAGGATGTCTCAGTGCCACTTGCAGAAATAAAGATCTATTCCCTATCCAGCCAGCCTATTGACCATGAAGGAATCAAGTCTAAGGTATCTGgtatgttgattttgagtggatctggtctcattctgctgctgagaatataa #### Pacs1_ID892_2 --> 1 - 0 Original Alignment gCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttaggCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat Alignment from CESAR gCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttaggCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat Alignment from Spaln_aa2Genome GCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttagGCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat Alignment from Spaln_nt2Genome GCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttagGCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat Alignment from Pairagon GCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttagGCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat Alignment from Exonerate_protein2genome GCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttagGCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat Alignment from Exonerate_coding2genome GCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttagGCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat Alignment from GeneWise GCTCTTCAGCTTAACTCTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGATCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAG ccctgcacttccttcaggtttacactattcctttctctcatcctgtttagGCTCTTCAGCTTAACTTTGAAGAAACTTGTTATGCTTAAAGAAATGGACAAAGACCTTAACTCAGTAGTCATTGCTGTGAAGCTGCAGgtaagaaatgtagtgagtgctctgcatataacaaaattcagtcaacgcat #### Papss2_ID6706_2 --> 0 - 1 Original Alignment GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAg ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAggtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc Alignment from CESAR GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAg ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAggtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc Alignment from Spaln_aa2Genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAGgtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc Alignment from Spaln_nt2Genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAGgtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc Alignment from Pairagon GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAGgtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc Alignment from Exonerate_protein2genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAGgtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc Alignment from Exonerate_coding2genome GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAGgtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc Alignment from GeneWise GACCAGCAAAAATCCACCAATGTGGTCTACCAGGCCCATCATGTGAGCAGGAACAAGAGAGGACAAGTGGTTGGAACCAGGGGAGGATTCCGAGGATGTACCGTGTGGCTAACAG ctcactagagaagattatgcttgcctgatttgtgccttgctgccctgtagGACCAGCAGAAATCCACCAATGTGGTATACCAGGCCCATCATGTGAGTAGAAACAAAAGAGGACAGGTAGTTGGAACCAGGGGAGGATTCCGAGGGTGTACCGTCTGGCTAACAGgtaaccatattcagatatatcacaagttctgaagtgacactcttggtttc #### Papss2_ID6715_9 --> 0 - 1 Original Alignment ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTg tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTggtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga Alignment from CESAR ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTg tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTggtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga Alignment from Spaln_aa2Genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTGgtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga Alignment from Spaln_nt2Genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTGgtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga Alignment from Pairagon ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTGgtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga Alignment from Exonerate_protein2genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTGgtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga Alignment from Exonerate_coding2genome ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTGgtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga Alignment from GeneWise ATGGTGATGGAAAGTGGGGACTGGCTTGTTGGTGGAGACCTACAGGTGCTAGAGAGAATAAGGTGGGACGATGGGCTGGACCAATACCGCCTTACGCCTCTGGAGCTCAAACAGAAGTGTAAAGACATGAATGCTG tattacaaacatagacactccaaataaatccccaccccctcctccgccagATGGTGATGGAAAGTGGGGATTGGCTAATTGTTGGAGACCTACAGGTGTTAGAGAGAATAAGATGGGATGATGGGCTGGACCAATACTGCCTGACCCCATTGGAGCTAAGGCAGAAGTGTAAAGATATGAATGCTGgtaggcatcaaggttccagaatgctttttagcttaaaccccaagtgctga #### Patl1_ID3315_3 --> 2 - 0 Original Alignment atGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagatGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt Alignment from CESAR atGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagatGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt Alignment from Spaln_aa2Genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagATGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt Alignment from Spaln_nt2Genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagATGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt Alignment from Pairagon ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagATGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt Alignment from Exonerate_protein2genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagATGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt Alignment from Exonerate_coding2genome ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagATGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt Alignment from GeneWise ATGATGATTGGCAGGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGGTGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAA ccatgtcatctgtaaagcagagaccatttcatgtcgggtttgccttccagATGACGATTGGCAGGAAACACATGAGCGCCTGGCTGAGTTGGAGGAGAAGCTAGCCGTGGCAGCTGATGAACAAACAGGCAATGGAGAGAGAGATAAAATGGACTTGTTAGGTGACCATGAGGAGAATCTAGCTGAAAGGCTCAGTAAAATTCTGATTGATAATGGTCTAGAAGATCCAGTAATCATGAGAGCAGTACAGACCAGACCAGTTTTACAAgtgagttgccctgagcttgaactcaccctacccaaaataggctggtcatt #### Patl1_ID3321_6 --> 0 - 0 Original Alignment ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc Alignment from CESAR ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc Alignment from Spaln_aa2Genome ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc Alignment from Spaln_nt2Genome ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc Alignment from Pairagon ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc Alignment from Exonerate_protein2genome ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc Alignment from Exonerate_coding2genome ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc Alignment from GeneWise ATCCTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCG gtaggagcgcaaaggagtagaatgtagtcctcagccgcttcccctcacagATCTTGTGTCCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTCCAAACCAGCTCTGCAGTGTCCCGgtacatcctttgcaatagcaaactttcaatgtttagcctgccctattgcc #### Patl1_ID3322_7 --> 0 - 0 Original Alignment AAC------TCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagAACCAGAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct Alignment from CESAR AAC------TCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagAACCAGAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct Alignment from Spaln_aa2Genome AACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagaaccagAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct Alignment from Spaln_nt2Genome AACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagaaccagAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct Alignment from Pairagon AACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagaaccagAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct Alignment from Exonerate_protein2genome AACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagaaccagAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct Alignment from Exonerate_coding2genome AACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagaaccagAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct Alignment from GeneWise AACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGTACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAG ggaagtcaacgttcaaaggatcaaattacctttgtctttccttctcaaagaaccagAACTCCTCCTTTCTAGGTCACCCATTTCCCCCTACTGTTCCTCCTGTACTCCATCCCCTACAGAGGGCTCAGCTCCTTGGTGGGACTCGGgtgagtctatcttctgtctcctgtttaaccaaagactcattgcttgccct #### Patl1_ID3330_15 --> 1 - 0 Original Alignment gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcaggCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta Alignment from CESAR gCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcaggCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta Alignment from Spaln_aa2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta Alignment from Spaln_nt2Genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta Alignment from Pairagon GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta Alignment from Exonerate_protein2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta Alignment from Exonerate_coding2genome GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta Alignment from GeneWise GCCAAGTGATGACCACTTTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGATGAG cctttttgtatcacattttctttagtggtgtgattgttcaactactgcagGCCCAGTCATGACCACTTTGTACAGATCATGTGTATCCAAAAAGGGAAGAGAATGGTTGCCCGGATTATCCCTTTCCTCTCCACAGAGCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAATCTCCCCTTCCTTATCAAGAAAGATGCCCTAGATGAGgtgagagatgtgtagcacgtaaagactcttaaaaaaaggccagaaaagta #### Patl1_ID3331_16 --> 0 - 0 Original Alignment GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag Alignment from CESAR GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag Alignment from Spaln_aa2Genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag Alignment from Spaln_nt2Genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag Alignment from Pairagon GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag Alignment from Exonerate_protein2genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag Alignment from Exonerate_coding2genome GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag Alignment from GeneWise GTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCAGCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCACTGCTGTGCTCCAGAACAAG gtttggttgttataagaagataaaattctttgctgatgttggctttacagGTGCTACCATGCTTACTGAGCCCCTTCTCCCTCCTGTTATATCATCTCCCACCAGCGACTGTGACCAGCCTTCTTCAACAGGTAATGAACCTGCCCCAGAGCACAAGTGCGCCAGCACCATCAAATTCTTACCTCACTGCTGTGCTCCATAATCAGgtaagtttgtctagttgttcctctaagatttatcactactgtttcaagag #### Pax2_ID9137_3 --> 1 - 2 Original Alignment gTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACag ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagaTATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACaggtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg Alignment from CESAR gTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACag ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagaTATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACaggtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg Alignment from Spaln_aa2Genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagATATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACAGgtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg Alignment from Spaln_nt2Genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagATATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACAGgtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg Alignment from Pairagon GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagATATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACAGgtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg Alignment from Exonerate_protein2genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagATATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACAGgtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg Alignment from Exonerate_coding2genome GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagATATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACAGgtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg Alignment from GeneWise GTACTACGAGACTGGCAGCATCAAGCCCGGAGTGATTGGTGGCTCCAAGCCCAAGGTGGCAACGCCCAAAGTGGTGGACAAGATTGCCGAATACAAGCGACAGAACCCGACTATGTTCGCCTGGGAGATCCGTGACAGGCTGCTAGCCGAGGGCATCTGCGATAATGACACAGTTCCCAGTGTCTCATCCATCAACAG ccatcatagctcctgctggctgttgcttgttctggtaaattgaaatacagATATTATGACACAGGCAGCATCAAGCCCAGAGTCATTGGTGGCTCTAAGCCTAAGGTTGCAACACCTAAAGTGGTGGACAAGATTGCTGAATACAAGCAACATAATTCAACTATGTTTGCATGGGAGATTCGTGATAGGCTTTTAGCAGAAGGCATCTGTGATAATGACACAGTCCCAAGTGTCACATCCATCAACAGgtgagcataacccagagtagttgatggccttccagtgtgtcctagtttgg #### Pcgf5_ID7129_5 --> 2 - 0 Original Alignment atGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagatGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact Alignment from CESAR atGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagatGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact Alignment from Spaln_aa2Genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagATGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact Alignment from Spaln_nt2Genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagATGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact Alignment from Pairagon ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagATGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact Alignment from Exonerate_protein2genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagATGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact Alignment from Exonerate_coding2genome ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagATGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact Alignment from GeneWise ATGATATTTCGAAGGTTGACAAGTCTAAAGCAGATGAGGAAGGTGATGAAAACCAAGATGATAAGGACTATCATAGAAGTGACCCGCAAATTGCTATCTGTCTGGACTGTTTACGAAATAATGGGCAGTCAGGGGACAACGTAGTGAAG ttcacttcgttttccagacctgaattgcgctttgtccccttttggtgcagATGATATTTCAAAGGTAGATAAGTCTAAAGCAGATGAGGAAGTTGATGAAAACCATGATGATAAAGACTACCATAGAAGTGACCCACAAATCGCTATCTGTCTGGACTGCTTACGAAATAATGGGCAGTCAGGGGACAATGTAGTAAAGgtaggttgggagggtgtcttccataaccatgagggtgaaaaggttgaact #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCaggtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCaggtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG agggatgttgcctgggctcttgagtaaagacatgttattatctttggcagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATCGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCAGCCAGgtgagtgcctacaggcagcggaaaaaagcccaacaactcattagtacact #### Pcnxl3_ID1165_28 --> 0 - 0 Original Alignment AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTA---AATGAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGAC---CGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg Alignment from CESAR AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTAAAT---GAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGAC---CGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg Alignment from Spaln_aa2Genome AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTAAAT---GAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGAC---CGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg Alignment from Spaln_nt2Genome AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTAA---ATGAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGA---CCGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg Alignment from Pairagon AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTAA---ATGAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGA---CCGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg Alignment from Exonerate_protein2genome AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTAAAT---GAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGAC---CGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg Alignment from Exonerate_coding2genome AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTAAAT---GAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGAC---CGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg Alignment from GeneWise AGCATCATCTACTATGTGAGCCGCTCTCCAAAGCTAGAGACCTGGCTGAACCATGAGGGCATCGCCGCTGCCCTCCGGCCTGTGCGAGCCCTTGGTTACGCAGACTCGGACCCCACCTTCTCACTGAGTGTTGACGAGGACTACGACCTCCGGTTGTCTGGCCTCTCCCTGCCATCCTTCTGCGCTGTCCACCTCGAGTGGATCCAGTACTGTGCCTCTCGGCGCAGCCAG agtcaataatgtgttactcacaatgatggtgtgtgtgtatttctctgcagAGCATTATCTACTATGTGACGCGTTCTCCCAAGCTAGAGAGCTGGCTAAAT---GAGAGGATTGCTACTGCACTCCATCCTGTGCAAGCTGTTGGCTATGAAGACTCAGATCCCACCTTCTCTTTGAGTGTTGATGAGGACTATGAC---CGGTTATCTGGCCTTTCTCTCCCATCTTTCTGTGCGGTCCACCTTGAGTGGATCCACTACTGTTCCTCCCGGCACAGCCAGgtaagttcttgcctccttggggccttttcccaatacacatacactggggg #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgggtttacttggtttacttgacctggcttacctctccccacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg aggcaatgggtttacttggtttacttgacctggcttacctctccccacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG aggcaatgggtttacttggtttacttgacctggcttacctctccccacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACGCGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTCGTCCTGGCCCCAGACTACCTCAATGGACTTGTCCAGCTCATTGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtagggcagactgggatcgtacacaagttaggggcagagcatagatatat #### Pcnxl3_ID1171_22 --> 1 - 0 Original Alignment cTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagcTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca Alignment from CESAR cTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagcTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca Alignment from Spaln_aa2Genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagCTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca Alignment from Spaln_nt2Genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagCTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca Alignment from Pairagon CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagCTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca Alignment from Exonerate_protein2genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagCTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca Alignment from Exonerate_coding2genome CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagCTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca Alignment from GeneWise CTGCCGGGCCTTGCTGATGACTGTGGCGGGGCTGAAGCTGCTGCGCTCGGCCTTCTGTTGCCCACCCCAGCAGTACCTGACCTTGGCCTTCACTGTCCTCCTCTTCCACTTCGACTACCCGAGGCTCTCACAGGGCTTCCTGCTTGACTACTTCCTCATGTCTCTGCTCTGCAGCAAG cctctccacttgctatgtgttaataaattccccctctctgactgaggcagCTGCCGAGCTTTGCTGATGACTGTCGTGGGCCTTAAGCTGCTGTGCTCAGCATTCTATTGCCCACTACAGCAGTACCTAACCCTGGACTTCATTGTCCCTCTCTTCCACTTTGACTACCCAAGAGTTTCACAAGGCTTCCTCCTTGACTACTATCTTATATCTTTGCTCTGCAGCAAGgtttgtcaggatatgtttagaccgaagcaattaagtagttagactctgca #### Pcnxl3_ID1172_21 --> 2 - 2 Original Alignment gcGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCta gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcaggaGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCtagttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg Alignment from CESAR gcGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCta gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcaggaGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCtagttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg Alignment from Spaln_aa2Genome GCGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCTA gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcagGAGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCTAgttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg Alignment from Spaln_nt2Genome GCGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCTA gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcagGAGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCTAgttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg Alignment from Pairagon GCGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCTA gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcagGAGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCTAgttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg Alignment from Exonerate_protein2genome GCGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCTA gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcagGAGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCTAgttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg Alignment from Exonerate_coding2genome GCGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCTA gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcagGAGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCTAgttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg Alignment from GeneWise GCGCTGCCCAGGTGATGTGGTTTGAGAAGCTCTACGCTGGCCTGCAGTGTGCTGAGAAGTACCTCATCTACCCTGCCGTGGTCCTCAACGCTCTCACAGTGGACGCCCACACAGTCGTCAGCCACCCAGACAAATTCTGCCTCTA gggtgctgtgttgcagcaggcccctatatctgatctgtcccttctctcagGAGCTGCCAGAGTGATGTGGTTTGAGAAACTCTATGCTGGTCTGCAGTGTGCTGAGAAATACCTCATCTTTCCTGCTGTAGTCCTCAATGCTCTCACAGTAGATGCTCATACAGTGGTTAGCCACCCAGACAGATTCTGCCTCTAgttttcacctccatggaataccctgctcctctatgtgtgtgtcaccatgg #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG tagagtgctatgggcagtcactgtcactcttcttgtacccatttatatagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGCGCTAGCATTGTGTTCATTGCCTTGAAAgtaatagcagcatgggcacagcttagataaatctgctgctatcttggtta #### Pcnxl3_ID1176_17 --> 0 - 2 Original Alignment ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCtg cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCtggtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt Alignment from CESAR ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCtg cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCtggtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt Alignment from Spaln_aa2Genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt Alignment from Spaln_nt2Genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt Alignment from Pairagon ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt Alignment from Exonerate_protein2genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt Alignment from Exonerate_coding2genome ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt Alignment from GeneWise ACACCTTGGCCAGAGCAGCACGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGCGACCCCACCGTTCTCTG cttacatgcactcacgctgcccctgatcttaagttctgtgtcttggccagACACCTTGGCCAGAGCAGCATGTCCCTGTCCTCTTCTCAGTCTTCTGTGGCCTCCTGGTGGCAATGTCCTACCATCTGAGCCGGCAGAGCAGTGACCCCACTGTCCTCTGgtaccaatgcttgaatcacagggtatgagtgtaccctgcacccagtctgt #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagtaTTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagtaTTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc #### Pcnxl3_ID1181_12 --> 1 - 0 Original Alignment gACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacaggACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACATT---ATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta Alignment from CESAR gACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacaggACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACATT---ATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta Alignment from Spaln_aa2Genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacagGACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACATT---ATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta Alignment from Spaln_nt2Genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacagGACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACAT---TATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta Alignment from Pairagon GACACGTGG---GGTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacagGACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACATT---ATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta Alignment from Exonerate_protein2genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacagGACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACATT---ATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta Alignment from Exonerate_coding2genome GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacagGACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACATT---ATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta Alignment from GeneWise GACACGTGGG---GTAATGGAGAACATTTTCGGTGTTGGATTGAGCAGCCTGGTTGCCTTCCTGGGATACCTGTTGCTGCTCAAGGGCTTCTTCACTGACATCTGGGTCTTCCAGTTCTGTCTGGTCATCGCCTCCTGTCAGTACTCCCTGCTCAAG ccaatgctctaaaggacttttggaaaggtgacactttgtgcatcctacagGACACGTGGTCCAGTAATGGAGAATATTTTTGGTGTAGGGGTGAGCACCCTACTTGCTATCCTTGGGTACCTGTTGCTCCTAAAGGGATTCATCACAGACATT---ATCTTTCAGTTTTGCCTGGTCATTGCTTCCTGTCAGTATTTTCTGCTCAAAgtgagtgctgggttctcagttttagaacagtagcatgcttcctatcttta #### Pcnxl3_ID1182_11 --> 0 - 2 Original Alignment GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACcg ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACcggtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg Alignment from CESAR GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACcg ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACcggtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg Alignment from Spaln_aa2Genome GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACCG ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACCGgtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg Alignment from Spaln_nt2Genome GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACCG ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACCGgtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg Alignment from Pairagon GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACCG ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACCGgtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg Alignment from Exonerate_protein2genome GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACCG ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACCGgtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg Alignment from Exonerate_coding2genome GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACCG ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACCGgtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg Alignment from GeneWise GAGCAGACACTGATGGAGGAGGCACCACCCCGGGCCCAGCACAGCTACAAGTACTGGTTTCTTCCTGGCCGTTGGACCTCTGTGCGCTACGAACGGCTGGCCCTGCTAGCTCTGTTGGACCG ggatgcgtcagtctgagcacctagaccattttttatttttccttgagcagGAGCAGACACTGATGGAGGAGGCACCACGCCAAGCCCAGCACAGTTACCAATTTTGGTTTCTCCCTGGGCGTTGGACCTCTGTTTGTTATGAACGGCTGGCCCAGCTAGCTCCACTGGACCGgtgagtgccaggaagcactaatcctgtttcagaacacgctacaaccctgg #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCaggtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAGGGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCC tctggtgaacaatactgtgagaagggtttttattgctgttcatattatagGTCCCACCCCCCAGTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGGTAAGTAGTAATCCCAGGCTGTGTCAAAGTCAGGCCTTGCTGTGAACTTA Alignment from GeneWise CCTGATGGTGGCTGGAGTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tctggtgaacaatactgtgagaagggtttttattgctgttcatattataggtcccaccccccagTCTCATGGTGGCTGGAGTGTATTGCCTAGTGGTGGCTGTTATTTTTGCTACCATCAAGACTGTAAACTATCGCCTCCACGCCACATTTGACCAGGGTGAGATCGTGGAAAAACGCAATTCCACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCCAGgtaagtagtaatcccaggctgtgtcaaagtcaggccttgctgtgaactta #### Pcsk5_ID4237_30 --> 2 - 2 Original Alignment gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga tgccagctgttctctgttacaacaccctttgttcaaatatggttacttaggtATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAgagtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca Alignment from CESAR gtATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAga tgccagctgttctctgttacaacaccctttgttcaaatatggttacttaggtATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAgagtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca Alignment from Spaln_aa2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgccagctgttctctgttacaacaccctttgttcaaatatggttacttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAGAgtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca Alignment from Spaln_nt2Genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgccagctgttctctgttacaacaccctttgttcaaatatggttacttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAGAgtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca Alignment from Pairagon GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgccagctgttctctgttacaacaccctttgttcaaatatggttacttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAGAgtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca Alignment from Exonerate_protein2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgccagctgttctctgttacaacaccctttgttcaaatatggttacttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAGAgtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca Alignment from Exonerate_coding2genome GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgccagctgttctctgttacaacaccctttgttcaaatatggttacttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAGAgtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca Alignment from GeneWise GTATGTACCTGTGGCTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTCACCAGTGGCAGCTGTGAAAAGTGTTCCGAGGACTGTGTCTCCTGCTCCGGTGCCGACCTTTGCCAACAGTGCCTGAGCCAGCCGGACAACACTCTGCTTCTCCATGAGGGCAGGTGCTACCACAGTTGCCCAGA tgccagctgttctctgttacaacaccctttgttcaaatatggttacttagGTATGTACCTGTGGTTGCAGGCCTGTGTTCCTTCCTGTCCCCAAGGCACTTGGCCATCAGTTACAAGTGGCAGTTGCGAAAAGTGTTCTGAGGACTGTGTCTCCTGCTCTGGTGCTGAGCTTTGTCAGCAGTGCTTGAGTCAGCCAGACAATACACTCCTACTCCATGAAGGTAAGTGCTACCACAGTTGCCCAGAgtagccctttattcccagttatgctatgtggtgtggccgttcctgcagca #### Pcsk5_ID4242_27 --> 2 - 1 Original Alignment gtGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATg acctaacttccatctccagactatgtgcgtggggtctctgctttttgtaggcAGCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATggtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct Alignment from CESAR gtGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATg acctaacttccatctccagactatgtgcgtggggtctctgctttttgtaggcAGCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATggtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct Alignment from Spaln_aa2Genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG acctaacttccatctccagactatgtgcgtggggtctctgctttttgtagGCAGCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATGgtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct Alignment from Spaln_nt2Genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG acctaacttccatctccagactatgtgcgtggggtctctgctttttgtagGCAGCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATGgtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct Alignment from Pairagon GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG acctaacttccatctccagactatgtgcgtggggtctctgctttttgtagGCAGCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATGgtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct Alignment from Exonerate_protein2genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG acctaacttccatctccagactatgtgcgtggggtctctgctttttgtagGCAGCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATGgtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct Alignment from Exonerate_coding2genome GTGGCAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG acctaacttccatctccagactatgtgcgtggggtctctgctttttgtagGCAGCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATGgtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct Alignment from GeneWise CAGCTGTGTGCAGGATTGTGGCCCTGGCTTCCATGGAGACCAAGAGTTGGGAGAATGCAAGCCCTGCCACCGAGCCTGTGAGAATTGCACTGGCTCGGGCTACAACCAATGCAGCAGCTGTCAAGAAGGGTTGCAGCTATGGCATGGGACGTGTCTCTGGTCCACCTGGCCTCAGGTGGAAGGCAAGGACTGGAATG acctaacttccatctccagactatgtgcgtggggtctctgctttttgtaggcagCAGTTGTGTGCAGGATTGTGGACCAGGCTTCCATGGAGACCAAGAATTGGGAGAATGCAAGCCCTGCCACCAGGCATGTGAGAACTGCACCAGTTCAGGATACAACCAATGCAGCAGCTGTCAAGAAGGATTGCAGTTATGGCATGGGATGTGCCTCTGGTCTACCTGGCCTCAGATTGAAGGCAAAGATTGGAATGgtaagttttctggtaaagggaggttaatgtaatttctgtcatatgtttct #### Pcsk5_ID4245_25 --> 2 - 2 Original Alignment atGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACat gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagatGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACatgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta Alignment from CESAR atGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACat gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagatGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACatgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta Alignment from Spaln_aa2Genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagATGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta Alignment from Spaln_nt2Genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagATGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta Alignment from Pairagon ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagATGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta Alignment from Exonerate_protein2genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagATGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta Alignment from Exonerate_coding2genome ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagATGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta Alignment from GeneWise ATGATCCAGGAGCCTGTACCTCGTGTGCTACAGGATATTACAT gctacaatatttgaggcacctttccatactctggtgtctttgttcctcagATGACCCAGGTGCCTGTACCTCATGTGGTACAGGATATTACATgtgagtcatctttgttcatcatcttatggacaatcactgacttagtccta #### Pcsk5_ID4264_19 --> 2 - 2 Original Alignment ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gggtatgacatgtactggccgctcgtcttattttttccccactctaccagggGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from CESAR ggGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGag gggtatgacatgtactggccgctcgtcttattttttccccactctaccagggGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAaggtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Spaln_aa2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Spaln_nt2Genome GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Pairagon GGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Exonerate_protein2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccaCTCTACCAGGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from Exonerate_coding2genome CTTGCTCTGGGGCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccaCTCTACCAGGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt Alignment from GeneWise --GCCGGAGCAGATGGATGTATTAACTGCACCGAGGGGTATGTCATGGAAGAGGGAAGGTGTGTACAAAGTTGTAGTGTGAGCTACTACTTGGACCACTCTTCAGAGGGTGGCTACAAATCCTGCAAGAG gggtatgacatgtactggccgctcgtcttattttttccccactctaccagGGGCTGGAGCAGATGGATTTATAAATTGCACTGAGGGGTATGTCATGGAAGAGGGAAAATGTGTTCAGAGTTGTAGTGTGAGTTACTACTTGGACCACTCCTCAGAGGGTGGCTACAAATCCTGCAAAAGgtactcttactaattgtggcccagccccaacactcagtatgagcggcctt #### Pcsk5_ID4265_18 --> 1 - 1 Original Alignment tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagtCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATTTC---------CGCTCTggtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac Alignment from CESAR tCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTg atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagtCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATTTC---------CGCTCTggtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac Alignment from Spaln_aa2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagTCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATTTC---------CGCTCTGgtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac Alignment from Spaln_nt2Genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTCAAT---GGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagTCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATTTC---------CGCTCTGgtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac Alignment from Pairagon TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagTCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATTTC---------CGCTCTGgtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac Alignment from Exonerate_protein2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGC atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagTCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATttccgctctggtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac Alignment from Exonerate_coding2genome TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGC atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagTCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATttccgctctggtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac Alignment from GeneWise TCTTCAGGGATCCCGCTGTTCGGTCACCTGCGAGGATGGACAGTTCTTC---AATGGTCACGACTGCCAGCCCTGCCATCGCTTCTGTGCTACTTGCTCTG atctctgtccctaacctaatctctgcataggctgtggttgcatttctcagTCTGCAGGGATCCCATTGCTCAGTTACCTGTGAAGATGGTCAATTCTTCAATAATGGTCATGACTGCCAGCCCTGCCATCATTTC---------CGCTCTGgtaaagatcaccttaggcacccccatcagaaactgaagccctcataaaac #### Pcsk5_ID4269_15 --> 2 - 2 Original Alignment gtCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCag cttttggtcctccctgtgaccccttcttatgtttttctctttctccctaggtCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAaggtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc Alignment from CESAR gtCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCag cttttggtcctccctgtgaccccttcttatgtttttctctttctccctaggtCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAaggtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc Alignment from Spaln_aa2Genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgtgaccccttcttatgtttttctctttctccctagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc Alignment from Spaln_nt2Genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgtgaccccttcttatgtttttctctttctccctagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc Alignment from Pairagon GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgtgaccccttcttatgtttttctctttctccctagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc Alignment from Exonerate_protein2genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgtgaccccttcttatgtttttctctttctccctagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc Alignment from Exonerate_coding2genome GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgtgaccccttcttatgtttttctctttctccctagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc Alignment from GeneWise GTCCCTGTGACCCTGAATGCAGTGAGGTTGGATGTGACGGGCCAGGACCAGATCACTGCAGTGACTGCTTACACTACTACTACAAGCTGAAAAATAACACCAG cttttggtcctccctgtgaccccttcttatgtttttctctttctccctagGTCCCTGTGACCCTAAGTGCAGTGAGATTGGTTGTGATGGGCCAGGACCCGATCACTGCAGTGACTGTTTACACTACTACTACATACTGAAAAATAACACAAGgtaagtgccaggacactctgtcatatattcctaagtatactaagcacatc #### Pcsk5_ID4286_10 --> 1 - 1 Original Alignment tCCGTTTCTGACCTGG---AGAGACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGg tctggttccctcctacttgacaatttgagagctttcttactattttacagtCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGggttggttcttctttcccagtctaacatcaacccaattttaaatggagggc Alignment from CESAR tCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGg tctggttccctcctacttgacaatttgagagctttcttactattttacagtCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGggttggttcttctttcccagtctaacatcaacccaattttaaatggagggc Alignment from Spaln_aa2Genome TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggttccctcctacttgacaatttgagagctttcttactattttacagTCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgttggttcttctttcccagtctaacatcaacccaattttaaatggagggc Alignment from Spaln_nt2Genome TCCGTTTCTGACCTGGAGAG---ACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggttccctcctacttgacaatttgagagctttcttactattttacagTCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgttggttcttctttcccagtctaacatcaacccaattttaaatggagggc Alignment from Pairagon TCCGTTTCTGACCTGGA---GAGACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggttccctcctacttgacaatttgagagctttcttactattttacagTCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgttggttcttctttcccagtctaacatcaacccaattttaaatggagggc Alignment from Exonerate_protein2genome TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggttccctcctacttgacaatttgagagctttcttactattttacagTCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgttggttcttctttcccagtctaacatcaacccaattttaaatggagggc Alignment from Exonerate_coding2genome TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggttccctcctacttgacaatttgagagctttcttactattttacagTCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgttggttcttctttcccagtctaacatcaacccaattttaaatggagggc Alignment from GeneWise TCCGTTTCTGACCTGGAGA---GACGTGCAGCATGTTATTGTCAGGACTTCCCGTGCGGGACATTTGAACGCTAATGACTGGAAAACCAATGCTGCTGGTTTTAAGG tctggttccctcctacttgacaatttgagagctttcttactattttacagTCCTTTTCTGTCATGGAGAGGAGATGTACAGCATGTCATTGTGAGGACTTCCCGAGCAGGCCATTTGAATGCTAATGACTGGGAAACAAATGCTGCTGGTTTTAAGGgttggttcttctttcccagtctaacatcaacccaattttaaatggagggc #### Pcsk5_ID4300_7 --> 2 - 0 Original Alignment gtGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacaggtGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCAGATGAA---GGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct Alignment from CESAR gtGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacaggtGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCAGAT---GAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct Alignment from Spaln_aa2Genome GTGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacagGTGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCA---GATGAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct Alignment from Spaln_nt2Genome GTGTGAGAATGCTGGATG---GTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacagGTGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCAGAT---GAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct Alignment from Pairagon GTGTGAGAATGCT---GGATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacagGTGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCAGATGAA---GGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct Alignment from Exonerate_protein2genome GTGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacagGTGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCA---GATGAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct Alignment from Exonerate_coding2genome GTGTGAGAATGCTG---GATGGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacagGTGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCA---GATGAAGGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct Alignment from GeneWise GTGTGAGAATGCTGGAT---GGTGATGTCACTGACATGGTGGAGGCAAAGTCTGTCAGCTACAACCCACAGCATGTGCACATCTACAGTGCCAGCTGGGGACCAGATGACGATGGCAAGACTGTGGATGGGCCAGCTCCCCTCACCCGGCAAGCCTTTGAGAACGGCGTGAGAATG tgaggtcagaccagttagcatagaacagatcaatcattttctcccaacagGTGTGCGAATGTTGGAGGAGGGTGGTGTCATTGATATGGTGGAGGCTAAGTCTGTGAGCTACAACCCACAGCATGTGCATATCTATAGTCCCAGCTGGGGGCCAGATGAA---GGCAAAACTGTGGATGGGCCAGCCCCTCTTACCCGGCAGGCCTTTGACAATGGTGTGAAAATGgtatgtggttagggcaactggggcaagtttacttgaaggactcataatct #### Pcsk5_ID4317_3 --> 0 - 0 Original Alignment GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg Alignment from CESAR GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg Alignment from Spaln_aa2Genome GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg Alignment from Spaln_nt2Genome GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg Alignment from Pairagon GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg Alignment from Exonerate_protein2genome GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg Alignment from Exonerate_coding2genome GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg Alignment from GeneWise GTGGAGTGGATCCAACAGCAAGTGGTGAAAAAAAGAACCAAGAGGGATTATGACCTCAGCCATGCCCAGTCAACCTACTTCAATGATCCCAAGTGGCCAAGTATGTGGTACATG caagacaggtatgccaccagatgaaatacacattgacctctcctccccagGTGGAGTGGATTCATCAACAGGTGGTGAAAAAAAGAACTAAGAGGGAATATGATCTTGGCCATGCCCAGACTACCTATTTCAATGATCCAAAGTGGCCAAGTATGTGGTACATGgtaagtggtgagaaaggccataactagccgtgaggtcaactatacccatg #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat #### Pcx_ID561_10 --> 0 - 0 Original Alignment GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATG---GTTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta Alignment from CESAR GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATG---GTTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta Alignment from Spaln_aa2Genome GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATG---GTTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta Alignment from Spaln_nt2Genome GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATGG---TTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta Alignment from Pairagon GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATGG---TTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta Alignment from Exonerate_protein2genome GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATG---GTTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta Alignment from Exonerate_coding2genome GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATG---GTTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta Alignment from GeneWise GTTTTCCGGAGTGGTGAGGGCATGGGCATCCGCCTGGACAACGCCTCTGCATTCCAGGGCGCTGTCATATCGCCCCACTATGACTCTCTGCTCGTCAAGGTCATTGCACACGGCAAAGACCACCCCACAGCTGCCACCAAGATGAGCAGAGCCCTGGCCGAGTTCCGTGTCCGAGGTGTAAAG tgattagcttccagtcccaacatccatcatatctccctgttgtctttcagGTCTTCCGAAGTGGTGAAGGTATG---GTTCGCATTGATAATGCTTCTGCAGTCCAGGGGGCTGTGATATTGCCCCAGTATGACCCTCTGCTTGTCAAGGTCATTGCGCATGGCAAAGACCACCCCTCAGCTGCCACAAAGATGAGCAGAGCCCTGGCTGAGTTTCGGGTGCGAGGTGTGAGAgtgcgtgatatgttcctctacctacactcatggtggtgtgctgccaatta #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAggtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAggtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccactttctacctac Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaacttgcctctgctcg Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccactttctacctac Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccactttctacctac Alignment from Pairagon GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccactttctacctac Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccactttctacctac Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccactttctacctac Alignment from GeneWise --------------------------------------------------------CCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG TTATCTATGGTGGTTGCCTGACAAGCCTGTCTGTCTTTTGCCTTGAACAGGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccactttctacctac #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactatcatcaatgtctt Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacacttgccgctgctctta Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactatcatcaatgtctt Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactatcatcaatgtctt Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactatcatcaatgtctt Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactatcatcaatgtctt Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactatcatcaatgtctt Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactatcatcaatgtctt #### Pdcd11_ID10113_7 --> 0 - 0 Original Alignment GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG atagtgctcttgatgatttattatgtctatgcttatttttctttcttcagGTAACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTTTAGTTGACTTCATGCATTCGGAACCCAAGAAAATGGGATCATATTCTCCGAATCAAATGgtaagtaatctcttggtagtttgccttgataagcattactgtccaagtat Alignment from CESAR GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG atagtgctcttgatgatttattatgtctatgcttatttttctttcttcagGTAACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTTTAGTTGACTTCATGCATTCGGAACCCAAGAAAATGGGATCATATTCTCCGAATCAAATGgtaagtaatctcttggtagtttgccttgataagcattactgtccaagtat Alignment from Spaln_aa2Genome GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG atagtgctcttgatgatttattatgtctatgcttatttttctttcttcagGTAACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTTTAGTTGACTTCATGCATTCGGAACCCAAGAAAATGGGATCATATTCTCCGAATCAAATGgtaagtaatctcttggtagtttgccttgataagcattactgtccaagtat Alignment from Spaln_nt2Genome GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG atagtgctcttgatgatttattatgtctatgcttatttttctttcttcagGTAACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTTTAGTTGACTTCATGCATTCGGAACCCAAGAAAATGGGATCATATTCTCCGAATCAAATGgtaagtaatctcttggtagtttgccttgataagcattactgtccaagtat Alignment from Pairagon GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG atagtgctcttgatgatttattatgtctatgcttatttttctttcttcagGTAACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTTTAGTTGACTTCATGCATTCGGAACCCAAGAAAATGGGATCATATTCTCCGAATCAAATGgtaagtaatctcttggtagtttgccttgataagcattactgtccaagtat Alignment from Exonerate_protein2genome atagtgctcttgatgatttattatgtctatgcttatttttctttcttcaggtaacccagtttgggctccagttaaatttcctcatgttcttcaggagtttagttgacttcatgcattcggaacccaagaaaatgggatcatattctccgaatcaaatggtaagtaatctcttggtagtttgccttgataagcattactgtccaagtat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAACTCAGTTTGGACTCCAGCTAAATTTCCTTACGTTCTTCAAGGGCCTGGTTGACTTCATGCATCTGGAGCCCAAGAAAATGGGATCTTATTCTTCAAATCAAACG atagtgctcttgatgatttattatgtctatgcttatttttctttcttcagGTAACCCAGTTTGGGCTCCAGTTAAATTTCCTCATGTTCTTCAGGAGTTTAGTTGACTTCATGCATTCGGAACCCAAGAAAATGGGATCATATTCTCCGAATCAAATGgtaagtaatctcttggtagtttgccttgataagcattactgtccaagtat #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gtgggctggtgtggccagaaaacatcactgtatgtatgtaatgttcacagGGGAAGAAGACAAAATCTACAGAGGTGTCTCGTCTGCACCTCTCTTCAGGTTTTCTCTGGGATGTGGGACTTGATTCTCTCACCCCGTCCTTGCCACTCCGGGAAGAGAGCTCAGACAGTGAGGATGAGCAGCCACACCAGGCTAAGgtacaccatctccttagccagtatgactgctaggactacttaatgccaac #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga #### Pdcd4_ID11399_6 --> 0 - 2 Original Alignment TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTcg tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTcggtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct Alignment from CESAR TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTcg tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTcggtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct Alignment from Spaln_aa2Genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct Alignment from Spaln_nt2Genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct Alignment from Pairagon TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct Alignment from Exonerate_protein2genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct Alignment from Exonerate_coding2genome TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct Alignment from GeneWise TTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATCTTATGTAATACCTATATCGATAGTTACAAAGGAACTGTAGATTGTGTACAGGCTCG tgaagattcacattaattttctataagaccatcactatcctgtctcccagTTGGTAGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGGATTTTATGTAATACCTATATAGATAGTTACAAAGGGACTGTGGATTGTGTCCATGCTCGgtacgtcaggctttcttatttttaaaggcctttactgtgtgtgtcatgct #### Pdcd4_ID11400_7 --> 1 - 0 Original Alignment aGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagaGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc Alignment from CESAR aGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagaGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc Alignment from Spaln_aa2Genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagAGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc Alignment from Spaln_nt2Genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagAGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc Alignment from Pairagon AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagAGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc Alignment from Exonerate_protein2genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagAGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc Alignment from Exonerate_coding2genome AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagAGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc Alignment from GeneWise AGCTGCTCTGGATAAGGCTACTGTGCTCCTGAGTATGTCCAAAGGCGGGAAGCGGAAAGACAGTGTGTGGGGATCTGGAGGCGGGCAACAGCCTGTCAATCACCTTGTTAAAGAG aggcaagcacaggcaagcacatatattgtgaattccttctttaattccagAGCAGCTCTAGACAAAGCTAATGTACTCCTCAGTATGTCTAAAGGTGGGAAACAAAAGGACAGTGTATGGGGATCTGGAGGCGGGCAACAATCTATCAATCACCTTGTTAAAGAGgtaataaccctttatacttagtgggtatgtctattgtacacgtctattgc #### Pde6c_ID7541_11 --> 0 - 0 Original Alignment AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg Alignment from CESAR AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg Alignment from Spaln_aa2Genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg Alignment from Spaln_nt2Genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg Alignment from Pairagon AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg Alignment from Exonerate_protein2genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg Alignment from Exonerate_coding2genome AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg Alignment from GeneWise AAGTTTAAAGAGAAGTTAAATGTAGAGGTAATTGAAGAGTGTGAAGAGAGACAGCTCCTGGCCATATTG agtaggcatttgttgtgcctctatttatggtttttctttattaatgccagAGGTTTAAAGAGAAGCTAAATGTAGAAGTGATTGAAGAGTGTGAAGACAGACAGTTTCTGGCAATACTGgtgagtgattctttctttctaatatgtatgttttctcattgtttcccttg #### Pde6c_ID7544_14 --> 0 - 2 Original Alignment ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGcagtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt Alignment from CESAR ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGaa ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGcagtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt Alignment from Spaln_aa2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt Alignment from Spaln_nt2Genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt Alignment from Pairagon ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt Alignment from Exonerate_protein2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt Alignment from Exonerate_coding2genome ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt Alignment from GeneWise ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA ttgaatgatgcggggtaatctgaaatcgttctctttccccaattccttagACAGGGAGATTAAAAAAATACTATACAGAGCTTGAAGCCTTT---------GCTTCTGCCTTCTGCCATGATATGGATCATAGAGCAACCAACAACTTGTACCAAATGCAgtgtgaaatgatcagtacacacatagctgtcctgatagattctgggaggt #### Pde6c_ID7545_15 --> 1 - 0 Original Alignment gTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacaggTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg Alignment from CESAR gTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacaggTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg Alignment from Spaln_aa2Genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg Alignment from Spaln_nt2Genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg Alignment from Pairagon GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg Alignment from Exonerate_protein2genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg Alignment from Exonerate_coding2genome GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg Alignment from GeneWise GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG aaagtgcagatttctgcgaatgaagccccctgactcagctttcccaacagGTCCACATCTCCACTTGCAAGGCTGCATGGGACATTCATTCTAGAACGACATCACCTTGAATATAGCAAAACAGTCTTACGAGACGAGgtgagagggatatggtgcaaccaactggagctgccctaaccaacaatttg #### Pdlim1_ID7884_5 --> 1 - 1 Original Alignment cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagtGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACAAG---------GAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAggtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac Alignment from CESAR cGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAg acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagtGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACAAG---------GAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAggtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac Alignment from Spaln_aa2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACAAG---------GAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac Alignment from Spaln_nt2Genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACA---------AGGAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac Alignment from Pairagon CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACA---------AGGAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac Alignment from Exonerate_protein2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACAAG---------GAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac Alignment from Exonerate_coding2genome CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACAAG---------GAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac Alignment from GeneWise CGTGGTTCAGCCTCATCCCTCCGGCAGCCTTATCATTGACAAGGACTCTGAAGTTTACAAGATGCTTCAGGAGAAGCAAGAATTAAACGAGCCCCCCAAACAGTCCACATCCTTCCTGGTTCTGCAGGAGATCCTGGAGTCAGATGGGAAAG acaaggacttttcactttcatccttggttcgccgggacgatcctctgcagTGTAGTTCAACCACATCCATCAGACAGCCTTATCATTGACAAGGAATCTGAGGTGTACAAG---------GAGAAGAAGGAATTGAATGAGCCCCCCAAGCAAGCCACAGCATTTCTGGCTCTGCAGGAGATCCTGGAATCAGATGGGAAAGgtaacataatggtaagattagatgaaatctgcttgtccagaaccagaaac #### Pdzd8_ID12955_2 --> 1 - 2 Original Alignment gTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCag aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcaggTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTaggtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag Alignment from CESAR gTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCag aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcaggTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTaggtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag Alignment from Spaln_aa2Genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcagGTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTAGgtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag Alignment from Spaln_nt2Genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcagGTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTAGgtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag Alignment from Pairagon GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcagGTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTAGgtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag Alignment from Exonerate_protein2genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcagGTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTAGgtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag Alignment from Exonerate_coding2genome GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcagGTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTAGgtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag Alignment from GeneWise GTTTAAGCCGTTTTTTCCATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGAACTTATCCATATTCAACAATGGGCACTTACTGAAGGCCGGCTTAAAGTTACATTGTTAGAATGTAGCAG aatctagtcaatattcagaaagtttgccctcttctccttcttccctgcagGTTTAAATCATTTTTTCGATACCAAGCCTTGCAAGGATTTGAAGAAGATGAAGCACTAATCCATATTCAACAATGGGCACTTACGGAGGGCCGGCTTAAGGTTACATTGCTAGAATGTAGTAGgtatggttggggttgccctttattctgcgaaaaggtgcagtcttccccag #### Peo1_ID9265_2 --> 2 - 2 Original Alignment ggCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCag taagattttagttttcaacttcatgtaaaatgtattaattatgattctaggtCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCaggtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat Alignment from CESAR ggCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCag taagattttagttttcaacttcatgtaaaatgtattaattatgattctaggtCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCaggtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat Alignment from Spaln_aa2Genome GGCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCAG taagattttagttttcaacttcatgtaaaatgtattaattatgattctagGTCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCAGgtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat Alignment from Spaln_nt2Genome GGCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCAG taagattttagttttcaacttcatgtaaaatgtattaattatgattctagGTCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCAGgtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat Alignment from Pairagon GGCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCAG taagattttagttttcaacttcatgtaaaatgtattaattatgattctagGTCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCAGgtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat Alignment from Exonerate_protein2genome GGCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCAG taagattttagttttcaacttcatgtaaaatgtattaattatgattctagGTCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCAGgtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat Alignment from Exonerate_coding2genome GGCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCAG taagattttagttttcaacttcatgtaaaatgtattaattatgattctagGTCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCAGgtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat Alignment from GeneWise GGCCAACAGGCAGTGGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTAGCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGAGCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCACGGACAACAGAGCATCAG taagattttagttttcaacttcatgtaaaatgtattaattatgattctagGTCCAACCGCCAGTGGCAGGACAACATTCATAAGTGAGTATGCCCTGGATTTATGTACCCAGGGTGTCAACACACTCTGGGGTGGCTTTGAGATAAGTAACGTGAGGTTGGCTCAGGTCATGCTGACTCGGTTTGCTGTGACACGCCTGGATGAAAAGTTGGAGAAATACGAAGAATGGACAGACCATTTTAAGGACCTGCCTCTCTACTTTATGACTTTTCACGGACAGCAGAGCATCAGgtaagaccgttaatgcttttcctgagtacctattcagttgttacacccat #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTA---------------TTTACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGA---TGTTAACTGCTTGCCAGATATTGTAT---------------TTACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGA---TGTTAACTGCTTGCCAGATATTGTAT---------------TTACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTT---------------ACATACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG cgggcagcccgctctgggcctcctgctatcatggactactctttattcagTACTTTCTAAAGTGTGAT---GTTAACTGCTTGCCAGATATTGTATTTACA---------------TACCCAGTGCCAGCTAGTACCTACATTCGAAAGgtagatcaggtaggagtgattaagtagctcatcttgctttggtttctatg #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACT---TTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagctCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACT---TTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagctCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACT---TTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTT---TCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCA---CTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACT---TTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACT---TTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACT---TTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG gtgctcacacccaaagcacaccccacacctgtgttctctcccttgtgcagCTCACCACAAAGCCTTCAACACTCTTTGGTCCTCCACTTCTTTCCTGATTGCAGGCCAACCTGTGAATGTTGCCTATGGTTCAGGAGAGATGTCAGGATTTCTTGCATATGACACTGTACGGgtaagttggcaagcagtaggttttctgtgaatagccgtggatagctatat #### Pi4k2a_ID8399_2 --> 0 - 0 Original Alignment AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata Alignment from CESAR AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata Alignment from Spaln_aa2Genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata Alignment from Spaln_nt2Genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata Alignment from Pairagon AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata Alignment from Exonerate_protein2genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata Alignment from Exonerate_coding2genome AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata Alignment from GeneWise AGAATCGTTGCTGTCTTCAAACCCAAGAATGAAGAGCCATACGGGCACCTTAACCCTAAGTGGACCAAGTGGCTGCAGAAGCTGTGCTGCCCCTGCTGCTTTGGCCGAGACTGCCTTGTTCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCTAGCCTGGTGGACCAAAAACTGGAACTCAACATTGTACCACGTACAAAG ctctgactatgaggcatctctccttcctttcttctgcttgactctctcagAGAATTCCTGCTCTTTTCCAACCGAAGAATGAAGAACCGTATGGGCACTTCAACCCTAAGTGGGCCAAATGGCTTCAGAAACTGTGCTGCCCCTCCTGCTTTGGCCGAGATTGTCTTGTTCTCAACCAGGGTTACCTCTCTGAGGCAGGTGCTAGCCTGGTCGACCAAAAGTTAGAACTTAACATTGTATCACAAATGAGGgtaggtactgaattcccgggaccagttaccttcaaggatttttttgaata #### Pi4k2a_ID8403_6 --> 0 - 1 Original Alignment GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCAtgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt Alignment from CESAR GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAt gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCAtgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt Alignment from Spaln_aa2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt Alignment from Spaln_nt2Genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt Alignment from Pairagon GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt Alignment from Exonerate_protein2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt Alignment from Exonerate_coding2genome GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt Alignment from GeneWise GACACAGATTGGGTGATGGTGAGGGAGCCTGTTATCAAGGTGGCTGCCATAGACAACGGGCTAGCTTTCCCACTGAAGCATCCTGACTCCTGGAGGGCAT gtcccattatcctttccactgttttaggttgatttctttttaaatatcagGACACAGATTGGGTGATGGTGAGGGAACCTGTTATCAAGGTTGCTGCCATAGACAATGGGCTAGCTTTCCCACTAAAGCATCCTGACTCCTGGAGGGCATgtgagcccaggagactggggtttgccatgtatgtagctgttccgaggttt #### Pik3ap1_ID8156_13 --> 0 - 1 Original Alignment GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAg aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAggtacaggccataataccataccaaggacgatgggagttgagagaagaagg Alignment from CESAR GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAg aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAggtacaggccataataccataccaaggacgatgggagttgagagaagaagg Alignment from Spaln_aa2Genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtacaggccataataccataccaaggacgatgggagttgagagaagaagg Alignment from Spaln_nt2Genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtacaggccataataccataccaaggacgatgggagttgagagaagaagg Alignment from Pairagon GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtacaggccataataccataccaaggacgatgggagttgagagaagaagg Alignment from Exonerate_protein2genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtacaggccataataccataccaaggacgatgggagttgagagaagaagg Alignment from Exonerate_coding2genome GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtacaggccataataccataccaaggacgatgggagttgagagaagaagg Alignment from GeneWise GAAAATCTTAAAAGACTAAGAGAGAGCATCACCCGAAGACGGAAAGAGAAGCCAAAGTCTGGGAAGCACACAG aagggaatcaacctgtatgatactgtgggccctgtgtgtctcccctgcagGAAAATCTTAAAAGACTAAGGGAGAGCATCACCCGAAGACAGAAAGAGAAGCCAAAGTCTGGAAAGCACACAGgtacaggccataataccataccaaggacgatgggagttgagagaagaagg #### Pik3ap1_ID8161_8 --> 0 - 1 Original Alignment GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCt cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTAT---------------GTATCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCtgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg Alignment from CESAR GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCt cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTAT---------------GTATCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCtgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg Alignment from Spaln_aa2Genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTATGTA---------------TCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCTgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg Alignment from Spaln_nt2Genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTATG---------------TATCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCTgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg Alignment from Pairagon GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTATG---------------TATCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCTgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg Alignment from Exonerate_protein2genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTAT---------------GTATCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCTgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg Alignment from Exonerate_coding2genome GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTAT---------------GTATCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCTgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg Alignment from GeneWise GAGACGGTGGACATGCTGAAGACACACATTAAGGAGGAGTTGATGCAAGGGGAGGAGGCGGACGATGTGTACGAGTCCATGGCCCACCTATCCACAGACCTGCTGATGAAGTGCTCCCTCAACCCTGGCTGTGACGATGAGCTCTACGAGTCCATGGCTGCCTTCGCCCCAGCAGCCACAGAAGACCTCT cactacacccacaagtctgcccgattggttgctgtgtctccctgtctcagGAAACAGTAGACATGCTAAAGATATACATTAAGGAGGAGTTGATGCAGGGGGAGGAAGCAGATGATGTTTAT---------------GTATCCACAGACCTGCTAACAAAATGTGCTCTTAACCCAGGTTGTGATGATGAGGCCTACAAGTCAATGGCTACTTTTGTGCCAGCAGCCACAGAAGACCTCTgtaagaagttatgcctggttctgcttatcaggcttaaatagtgtgaaagg #### Pitpnm1_ID311_8 --> 2 - 0 Original Alignment atCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagatCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGT---GCTAGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt Alignment from CESAR atCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagatCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGTGCT---AGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt Alignment from Spaln_aa2Genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagATCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGTGCT---AGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt Alignment from Spaln_nt2Genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagATCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGTGCT---AGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt Alignment from Pairagon ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagATCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGTGCT---AGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt Alignment from Exonerate_protein2genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagATCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGTGCT---AGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt Alignment from Exonerate_coding2genome ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagATCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGTGCT---AGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt Alignment from GeneWise ATCCTACAGTCATGGCTACCAAAGGCATTGAAGATGGGGCCCGAGCTCCCAGGGACTCAGAG ggccagtggttcttaatctgtctaacgatcatattgtgttttctaaacagATCCTACAGTCATGGCAACAAAGGGCATTGAAGATGGAGCACGTGCT---AGGGACTCTGAGgtgagttgcccctggaggacgttccccttgttgctgcaatgcacaactgt #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagtCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagtCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from GeneWise GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt #### Pla2g16_ID2178_2 --> 0 - 1 Original Alignment CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa tctggttctgaagttgagaccagcacttccttcctttcccacttctttagCCAGAACCCAAACCAGGTGACCTG---AAAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAagtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa Alignment from CESAR CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAa tctggttctgaagttgagaccagcacttccttcctttcccacttctttagCCAGAACCCAAACCAGGTGACCTG---AAAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAagtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa Alignment from Spaln_aa2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tctggttctgaagttgagaccagcacttccttcctttcccacttctttagCCAGAACCCAAACCAGGTGACCTG---AAAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa Alignment from Spaln_nt2Genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tctggttctgaagttgagaccagcacttccttcctttcccacttctttagCCAGAACCCAAACCAGGTGACCTGA---AAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa Alignment from Pairagon CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tctggttctgaagttgagaccagcacttccttcctttcccacttctttagCCAGAACCCAAACCAGGTGACCTGA---AAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa Alignment from Exonerate_protein2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tctggttctgaagttgagaccagcacttccttcctttcccacttctttagCCAGAACCCAAACCAGGTGACCTG---AAAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa Alignment from Exonerate_coding2genome CCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tctggttctgaagttgagaccagcacttccttcctttcccacttctttagCCAGAACCCAAACCAGGTGACCTG---AAAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa Alignment from GeneWise CTAGCACCCATACCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACTGGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAA tctggttctgaagttgagaccagcacttccttcctttcccacttctttag------------CCAGAACCCAAACCAGGTGACCTG---AAAATTTTCTGCCCTATGTATAGACATTGGGCCATCTATGTTGGTGATGGCTATGTGATCCACCTAGCTCCTCCAAgtaggaaaagcagtgtgtcctctgtcccaagtaactcatgacctagaaaa #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAggtcagtttgggggctgagctctaacacagttacaaagttgtgtactcacg Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAggtcagtttgggggctgagctctaacacagttacaaagttgtgttccatcc Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtactcacg Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtactcacg Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtactcacg Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtactcacg Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtactcacg Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ctgttttgccatatgctagccgtgagggaccagtcctctcctttctgcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCTGTATCTGCGATCCACTCAGgtcagtttgggggctgagctctaacacagttacaaagttgtgtactcacg #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagatTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagatTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta #### Plcb3_ID1917_14 --> 2 - 0 Original Alignment ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcaggcGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCCACT---AATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg Alignment from CESAR ggTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcaggcGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCC---ACTAATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg Alignment from Spaln_aa2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcagGCGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCC---ACTAATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg Alignment from Spaln_nt2Genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGAT agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcagGCGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCCACTAATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg Alignment from Pairagon GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcagGCGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCCACTA---ATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg Alignment from Exonerate_protein2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcagGCGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCC---ACTAATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg Alignment from Exonerate_coding2genome GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcagGCGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCC---ACTAATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg Alignment from GeneWise GGTCCCCCAGCTCCGACAGCTGCCCTGGCCTAAGCAATGGGGAGGAGGTGGGACTCGAGAAGACCAGCCTGGAGCCTCAGAAGTCTCTAGGTGAGGAGAGCCTCAGCCGGGAACCTAATGTGCCCATGCCTGACCGTGACCGAGAGGATGAGGAGGAAGATGAAGAAGAAGAGGAAACAACGGATCCAAAAAAGCCCACCACTGATGAG agttctgcaaggatatggttctgccatttccaaccccatgctgcctgcagGCGTACCAAGTTCAGACAGCTGCCCTGGGTTAAGCAATGGGGAGGAGGTTGGTCTTGAGAAGACCAGCTTGGAGCCTCAGAAGTCCCTAGGTGAAGAAAGCCTTAGCCGGGAACCCAATGTGCCCATGCCAGACCGTGACCGTGATGATGAGGAGGAGGATGAAGAAGAAGATGAAACAATGGATCCTAAAAAACCCACT---AATGAGgtaagtaccaatgaaaaagtgtcagctgcatggtaccctcagcaactctg #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATG---GGTATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTggtaagtgctctgtcttccactgttggacccagttcatggtattttatgct Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATGGGT---ATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTggtaagtgctctgtcttccactgttggacccagttcatggtattttatgct Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATGGGT---ATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTGgtaagtgctctgtcttccactgttggacccagttcatggtattttatgct Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATGG---GTATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTGgtaagtgctctgtcttccactgttggacccagttcatggtattttatgct Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATGG---GTATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTGgtaagtgctctgtcttccactgttggacccagttcatggtattttatgct Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATGGGT---ATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTGgtaagtgctctgtcttccactgttggacccagttcatggtattttatgct Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATGGGT---ATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTGgtaagtgctctgtcttccactgttggacccagttcatggtattttatgct Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcatcaagggatggtcaacatatccttttcattctcttcccattagCTATCTGAGGGTATCCCACTGCCTAGTCCACAGGACCTCATGGGT---ATTCTAGTGAAGAACAGGAAGCGACATAGGCCCCATACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCTTCAGAGTCCTTATCACCTCAGCTTGgtaagtgctctgtcttccactgttggacccagttcatggtattttatgct #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagaGCAAAGCAGCAC---AAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagaGCAAAGCAGCAC---AAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCA---CAAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCA---CAAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTCATTGACCCTCTCGACAAATACCCG tttaatgacactagaccaatgcagagcaaacatcactttcattttctcagAGCAAAGCAGCAC---AAGATGGCTGAGTACTGCCGGTCTATCTTTGGGGATGCGCTACTTATTGACCCTCTTGACAAATACCCAgtaggtgacagcctggaccgcatccaggtgcatgtgggggagggcagcct #### Plcb3_ID1920_11 --> 2 - 2 Original Alignment cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagcaGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACtcgtaagtgggcatctggagggagactcctggtacatccaatcttacacact Alignment from CESAR cgGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACtc attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagcaGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACtcgtaagtgggcatctggagggagactcctggtacatccaatcttacacact Alignment from Spaln_aa2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaagtgggcatctggagggagactcctggtacatccaatcttacacact Alignment from Spaln_nt2Genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaagtgggcatctggagggagactcctggtacatccaatcttacacact Alignment from Pairagon CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaagtgggcatctggagggagactcctggtacatccaatcttacacact Alignment from Exonerate_protein2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaagtgggcatctggagggagactcctggtacatccaatcttacacact Alignment from Exonerate_coding2genome CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaagtgggcatctggagggagactcctggtacatccaatcttacacact Alignment from GeneWise CGGGCCAGCTGGCTGGACCATCATCGGTGGAGATGTACCGCCAGGCACTGCTGTGGGGCTGCCGCTGTGTGGAGCTGGATGTATGGAAGGGACGGCCACCGGAGGAAGAGCCTTTCATCACTCATGGTTTCACCATGACCACTGAGGTGCCATTGCGTGATGTGCTAGAGGCCATCGCTGAGGCAGCCTTCAAGACCTCGCCCTACCCTGTCATCCTCTCCTTTGAGAACCATGTCGACTC attcaacaggaaacccaaagccaattgtaaccaattgaacactgtcttagCAGGTCAGCTAGCTGGGCCATCGTCAGTAGAGATGTACCGCCAGGCACTGCTGTGTGGCTGCCGCTGTGTGGCACTTGATGTTTGGAAGGGGCGACCGCCTGAGGAAGAACCATTCATCACTCATGGTTTTACCATGACTACTGAGGTGCCATTGTGTGATGTGCTTGGTGCTATTGCAGAGGCAGCTTTCAAAACCTCACCCTATCCTGTCATCCTTTCTTTTGAGAATCATGTTGACTCgtaagtgggcatctggagggagactcctggtacatccaatcttacacact #### Plce1_ID7616_4 --> 0 - 2 Original Alignment GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCag tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTcggtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata Alignment from CESAR GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCag tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTcggtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata Alignment from Spaln_aa2Genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTCGgtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata Alignment from Spaln_nt2Genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTCGgtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata Alignment from Pairagon GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTCGgtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata Alignment from Exonerate_protein2genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTCGgtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata Alignment from Exonerate_coding2genome GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTCGgtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata Alignment from GeneWise GTGAGCTCCTGGGTAACATGGCTGATCCTCACAGCAGGCTCCATGGAGGAGAAGCGGGAAGTCTTTTCTTATTTGGTGCATGTGGCCAAATGCTGCTGGAACATGGGCAACTACAACGCTGTCATGGAGTTCCTGGCTGGCCTCAG tggagagtaggtctagaagaagggggagaccagtggaactttctccacagGTCAGTTCCTGGGTGACATGGCTGATCCTTACAGCAGGCTCCATGGAGGAGAAACAAGAAGTCTTTTCATATTTAGTTCATGTGGCCAAGTGCTGCTGGAACATGGGTAACTACAATGCTGTGATGGAATTCCTGGCTGGCCTTCGgtaagtaagctgggtgccccaaacagattctatttgaccagttcttgata #### Plce1_ID7617_5 --> 1 - 0 Original Alignment gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccaggTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct Alignment from CESAR gTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccaggTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct Alignment from Spaln_aa2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct Alignment from Spaln_nt2Genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct Alignment from Pairagon GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct Alignment from Exonerate_protein2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct Alignment from Exonerate_coding2genome GTCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct Alignment from GeneWise -TCAAGGAAAGTTCTAAAGATGTGGCAGTTCATGGACCAGTCTGACATTGAGACCATGCGGAGCCTGAAGGATGCCATGGCCCAGCATGAGTCTTCCGTGGAGTACAAGAAGGTAGTGACCCGAGCCTTGCACATCCCCGGCTGCAAAGTGGTCCCCTTCTGTGGGGTGTTCCTGAAGGAGCTCTGTGAGGTGCTTGATGGTGCCTCTGGCCTCCTGAAGCTCTGCCCACGGTACAGCTCCCAAGAAGAAGCTCTGGAG tcatgtataaattcctagatcttaagagtcatgatatccctcccacccagGTCTAGAAAAGTTCTAAAGATGTGGCAGTTTATGGACCAGTCTGATATTGAGACCATGCGGAGCTTGGAGGATGCCATGGCCCAACACGAATCATCTGTGGAGTACAAGAGGGTAGTGACTCGGGCCTTACACATTCCTGGCTGCAAAGTGGTCCCTTTCTGTGGAGTGTTCCTGAAGGACCTCTGTGAAGTGTTAGATGGAGCTTCTGGCCTCCTCAAACTCTGCCCACGATACAGCTCCCAAGAGAAAGCACTGGACgtaatgtgctcaaagccctgattctgaacaaagccttttatatactcgct #### Plce1_ID7619_6 --> 0 - 2 Original Alignment TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGcagtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca Alignment from CESAR TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGca aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGcagtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca Alignment from Spaln_aa2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGCAgtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca Alignment from Spaln_nt2Genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGCAgtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca Alignment from Pairagon TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGCAgtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca Alignment from Exonerate_protein2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGCAgtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca Alignment from Exonerate_coding2genome TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGCAgtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca Alignment from GeneWise TTTGTAGCCGATTACAGTGGACAAGATAACTTCTTACAACGAGTGGGACAGAATGGCTTAAAGAATTCAGAGAAGGAGCTCACGGTCAACAGCATCTTTCAGGTCATCCGGAGCTGCAGCCGAAGTTTGGAGATGGAGGAGGAAGACAGTGCCAGTGAAGGGAGCGGCTCTAGGAAAAACTCCCTGAAGGACAAAGCCCGATGGCA aattagtcacatgagctgcaacactgatacttatgatcttctttctgcagTTGGTAGCTGATTACAGTGGACAAGATACCATTTTACAGCGAGTGGGACAAATTGGCTTAAAAAATGCTGAGAAAGAGCTTACAGTAAATTCTATCCTACAGGTCATCCGGAGTTGCAGCCGAAGTTTGGAGATGGAAGAAGAAGAAAGTGCTAGTGAAGGAACTGGTTCTAGAAAAAATTCCCTGAAGGACAAAGCCAGATGGCAgtaggccaaagcataagtgggtttatagccaggtaatcacttgatgtcca #### Plce1_ID7623_9 --> 0 - 1 Original Alignment GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGg tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTggtaagtaatgcctcatgctcctattgaaatcataattttttattactgct Alignment from CESAR GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGg tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTggtaagtaatgcctcatgctcctattgaaatcataattttttattactgct Alignment from Spaln_aa2Genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTGgtaagtaatgcctcatgctcctattgaaatcataattttttattactgct Alignment from Spaln_nt2Genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTGgtaagtaatgcctcatgctcctattgaaatcataattttttattactgct Alignment from Pairagon GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTGgtaagtaatgcctcatgctcctattgaaatcataattttttattactgct Alignment from Exonerate_protein2genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTGgtaagtaatgcctcatgctcctattgaaatcataattttttattactgct Alignment from Exonerate_coding2genome GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTGgtaagtaatgcctcatgctcctattgaaatcataattttttattactgct Alignment from GeneWise GGAGAGAGTGGAGAGGTGACGGACGATGAGATGGCTACCCGCAAGGCCAAAATGTACAGAGAGTGTCGCAGCCGGAGCGGCTCTGATCCTCAAGACGTTAACGAACAAGAAGAGTCGG tttggcatgagatagaacccagcagccaccttctctctccacctgggcagGGTGAAAGTAGAGATGTAACTGATGATGAAATGGCCACTCAAAAGGCTAAAATGTACAGAGAGTGTCATAGCCGGACTGGCTCAGGTCCTCAAGATGCTAATGGACAAAAAGAGCTTGgtaagtaatgcctcatgctcctattgaaatcataattttttattactgct #### Plce1_ID7633_16 --> 0 - 0 Original Alignment GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag Alignment from CESAR GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag Alignment from Spaln_aa2Genome GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag Alignment from Spaln_nt2Genome GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag Alignment from Pairagon GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag Alignment from Exonerate_protein2genome GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag Alignment from Exonerate_coding2genome GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag Alignment from GeneWise GTCCTCCTGCAAGGATGTAGAAGCATAGAGCTGGACTGCTGGGACGGGGATGATGGGATGCCCATCATCTATCATGGGCATACACTGACAACCAAGATCCCCTTCAAG gtatacttcaggtgttcatctggaatgctgttttgtcctcacacccccagGTCCTCCTGCAAGGTTGTAGAAGCATAGAATTGGACTGCTGGGATGGAGATGATGGGATGCCCATCATTTATCATGGGCATACACTGACAACTAAAGTCCCCTTCAAGgtaatggcccctactaaatcccagggcattaccctactaccttaacccag #### Plce1_ID7647_28 --> 0 - 0 Original Alignment GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt Alignment from CESAR GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt Alignment from Spaln_aa2Genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt Alignment from Spaln_nt2Genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt Alignment from Pairagon GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt Alignment from Exonerate_protein2genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt Alignment from Exonerate_coding2genome GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt Alignment from GeneWise GTTTTGGCAGTTGACCAAGACACCAAATGTACTGCCACAGACTATTTTTTGATGGAAGAGAAGCATTTTATATCTAAGGAAAAGAATGAATGCAGGAAACAACCATTCCAGAGAGCTGTGGGTCCAGAAGAAGATATTGTGCAGATTTTAAACAGTTGGTTCCCAGAAGAAGGCTACGTAGGCAGGATTGTCTTAAAGCCCCAACAGGAA tttgtgtgattctgtacagtggtcttgcagcctcccattcatccttacagGTTCTAGCAGTTGACCAAGACACTAAATGCACTGCCACAGATTGTTTTTTGATGGAGGAAAAGCACTTTATATCCAAAGAAAAGAATGAATGCAGGAAACAGCCATTTCAGAGAACTGTGAGCCCAGAAAGAGATATTGTGCAGATTTTAAACAGTTGGTTCCATGAAGAGGGATATGTAGGCAGAATTGTTTTGAGGCCTCAACAGGATgtgacatatcctagattcggtataagtggttggatctccttttgctaggt #### Plce1_ID7648_29 --> 0 - 0 Original Alignment ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga Alignment from CESAR ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga Alignment from Spaln_aa2Genome ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga Alignment from Spaln_nt2Genome ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga Alignment from Pairagon ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga Alignment from Exonerate_protein2genome ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga Alignment from Exonerate_coding2genome ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga Alignment from GeneWise ACTCTAGAAGAGAAAAGCATTGTCTTCGACGACAAAGAGGTGATCTTGAGCTCAGAGGAGGAGAGTTTCTTTGTGCAAGTGCATGATGTCTCTCCAGAGCAACCTCGAACTGTCATCAAAGCCCCACGTGTCAGCACTGCACAGGATGTAATTCAGCAG actgagctataacagtaatctataaaagccactgtgctttgctcccacagACTCTAGAAGAAAAGGGTATCATTTTTGATGACAAAGAAGTGATCTTGAGCTCAGAGGAGGGGGGCTTCATTGTGCAAGTGCATGATGTATCTCCAGAGCAGCCCCAAACAGTTATCAAAGCCCCGCGTGTCCGGACTGCACAGGACATAATTCAGCAGgtaagttgtttttttttgtctcacaacctggtcagtggcactgaccctga #### Plce1_ID7649_30 --> 0 - 0 Original Alignment ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat Alignment from CESAR ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat Alignment from Spaln_aa2Genome ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat Alignment from Spaln_nt2Genome ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat Alignment from Pairagon ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat Alignment from Exonerate_protein2genome ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat Alignment from Exonerate_coding2genome ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat Alignment from GeneWise ACCTTATGCAAAGCCAAATATTCCTACAGCATCCTGAACAACCCCAACCCATGTGACTATGTGCTTTTGGAAGAGGTGCTGAAAGATGCAGCTAATAAGAAGTCTTCTACCCCAAAGTCCTCGCAGAGGATCCTCTTGGACCAAGAATGTGTGTTTCAAGCGCAAAGCAAGTGGAAGGGTGCGGGAAAGTTCATACTTAAGCTAAAGGAGCAGGTGCAG ggatacatagatgctagttactgggcttttttgtctcccttgaattttagACTATCTGCAAGGCCAAATACTCATATAGCATCCTGAACAATCCCAATCCATGTGACTATGTGCTTCTGGAGGAGGTGCTAAAAGATGCTGCTAATAAGAAGTCTTCTACCCCAAAATCCTCACAGAGGATTCTCCTAGACCAAGAA---GTATTTCAAGCACAAAGCAAGTGGGAGGGTGCAGGCAGGTTCATTCTCAAGATACAGGAGCATGTGCAGgtgagtatactcaagatacaggagcatatgcatgtttagatcttccacat #### Plekhs1_ID12097_2 --> 2 - 0 Original Alignment gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttatgatcaaaatgcaaacagaataacgacctgtctctacccccaggcAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccatcttagttg Alignment from CESAR gcAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttatgatcaaaatgcaaacagaataacgacctgtctctacccccaggcAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccctggggctct Alignment from Spaln_aa2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttatgatcaaaatgcaaacagaataacgacctgtctctacccccagGCAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccatcttagttg Alignment from Spaln_nt2Genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttatgatcaaaatgcaaacagaataacgacctgtctctacccccagGCAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccatcttagttg Alignment from Pairagon GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttatgatcaaaatgcaaacagaataacgacctgtctctacccccagGCAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccatcttagttg Alignment from Exonerate_protein2genome GCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttatgatcaaaatgcaaacagaataacgacctgtctctacccccagGCAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccatcttagttg Alignment from Exonerate_coding2genome CCAGGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG aaacttatgatcaaaatgcaaacagaataacgacctgtctctacccCCAGGCAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccatcttagttg Alignment from GeneWise GAAGCCAGACCTCCAAAAGGCCCAGGCAAACAATTTACATTTGATTATGAAAATGAAGTCCATAAACGGGATTACTTCATTAAGTCGCCGCCCCCTCAGCTCTTCTTCTCTGGG atgatcaaaatgcaaacagaataacGACCTGTCTCTACCC------CCAGGCAAACAATTTACATTTGATTATGAGAATGAGGTCGATAAACGAGATTACTTTATTAAGTCACCATCCCCTCAGCTCTTCTTCTCTGGGgtacaggattgcattggctttactgactttaactagtgccatcttagttg #### Plekhs1_ID12106_11 --> 1 - 0 Original Alignment tGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagtGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGAC---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg Alignment from CESAR tGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagtGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGAC---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg Alignment from Spaln_aa2Genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagTGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGAC---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg Alignment from Spaln_nt2Genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagTGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGACC---TCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg Alignment from Pairagon TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagTGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGACC---TCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg Alignment from Exonerate_protein2genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagTGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGAC---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg Alignment from Exonerate_coding2genome TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagTGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGAC---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg Alignment from GeneWise TGTGGCTCGCTGGGAAGGTCCTCCCCGACTAGGATGCTTATTCTACCACGGAGATCATATCTTGGCCGTGAATGACCTGAAACCCCAAAGCCTGGAGGAGGTGTCCTTGTTTCTTACCCGATGTATCCAGAAGGAG tagcaaattgagtttggattcagcaaagttttacttctttcttggtgcagTGTAGCCCGGTGGGAGGGCCCTTCTCGGTTAGGGTGCCTATTCTACCATGGAGAC---CTCCTGGCTGTGAATGATCTCAAACCCCAAAGCCTAGAGGAGGTGTCCTTGTTTCTTACGCAATGTATACAGAAGGAGgtatgtgtatcacaagaatacttgatctactccctactttcagaagaatg #### Pnlip_ID12747_6 --> 2 - 1 Original Alignment ggTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAg cccctctttagcattcattaggagggtaatggcgttttattcattttcagggTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAggtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa Alignment from CESAR ggTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAg cccctctttagcattcattaggagggtaatggcgttttattcattttcagggTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAggtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa Alignment from Spaln_aa2Genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG cccctctttagcattcattaggagggtaatggcgttttattcattttcagGGTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAGgtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa Alignment from Spaln_nt2Genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG cccctctttagcattcattaggagggtaatggcgttttattcattttcagGGTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAGgtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa Alignment from Pairagon GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG cccctctttagcattcattaggagggtaatggcgttttattcattttcagGGTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAGgtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa Alignment from Exonerate_protein2genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG cccctctttagcattcattaggagggtaatggcgttttattcattttcagGGTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAGgtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa Alignment from Exonerate_coding2genome GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG cccctctttagcattcattaggagggtaatggcgttttattcattttcagGGTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAGgtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa Alignment from GeneWise GGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAG cccctctttagcattcattaggagggtaatggcgttttattcattttcagGGTTAGACCCTGCAGAGTCATATTTCCAGGGCACCCCGGAAGAAGTCCGTCTGGACCCCACTGATGCCCAGTTTGTGGATGCAATTCATGCAGATGCTGGACACATTATCCCTAACTTAGgtaagctcatgtaactatctggtgtaacaccttgtttgccggccaaataa #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagggAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagggAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga #### Pnliprp1_ID12772_9 --> 0 - 1 Original Alignment AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAc acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCAcgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt Alignment from CESAR AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAc acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCAcgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt Alignment from Spaln_aa2Genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCACgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt Alignment from Spaln_nt2Genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCACgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt Alignment from Pairagon AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCACgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt Alignment from Exonerate_protein2genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCACgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt Alignment from Exonerate_coding2genome AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCACgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt Alignment from GeneWise AACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCAC acagtagttcttgacagtaaaaaacttgacaacctgccttttgttcacagAATAAATGCTTACCCTGCCCAGACGAGGGCTGCCCACAGATGGGTCACTATGCTGATAAGTTTGCCAACAATACTAGTGTGGAGCCACCAAAGTTCTTCCTTAACACAGGAAAAGCTAAAAATTTTGCACgtgagttatgtactgagacaggtcataggtgaattgttcactacctaatt #### Pnliprp2_ID12784_7 --> 2 - 1 Original Alignment gtTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAg taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggaggcTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAggtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag Alignment from CESAR gtTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAg taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggaggcTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAggtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag Alignment from Spaln_aa2Genome GTTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAG taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggagGCTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAGgtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag Alignment from Spaln_nt2Genome GTTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAG taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggagGCTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAGgtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag Alignment from Pairagon GTTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAG taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggagGCTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAGgtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag Alignment from Exonerate_protein2genome GTTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAG taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggagGCTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAGgtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag Alignment from Exonerate_coding2genome GTTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAG taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggagGCTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAGgtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag Alignment from GeneWise GTTTCGGAATGAGCCAAAAGGTCGGCCATCTGGATTTCTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAG taatctcaaccagggtacaccctggcaagggaatctgtctgtctttggagGCTTTGGAATGAGCCAAAAAGTTGGCCATCTGGATTTCTTTCCCAATGGAGGTCAAGAGATGCCCGGATGTCAGAAGAACATCCTTTCCACTATTATAGATATCAACGGTATATGGGAAGgtaggactctttctaaccttatctcacaaaatctaggcaccacagcacag #### Pnliprp2_ID12787_9 --> 0 - 1 Original Alignment AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACACGGGGGACAGCAGCAATTTCACTcgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat Alignment from CESAR AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTc cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACACGGGGGACAGCAGCAATTTCACTcgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat Alignment from Spaln_aa2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACACGGGGGACAGCAGCAATTTCACTCgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat Alignment from Spaln_nt2Genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACACGGGGGACAGCAGCAATTTCACTCgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat Alignment from Pairagon AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACACGGGGGACAGCAGCAATTTCACTCgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat Alignment from Exonerate_protein2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACACGGGGGACAGCAGCAATTTCACTCgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat Alignment from Exonerate_coding2genome AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAAT--GGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATA cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCC--AATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACAcgggggacagcagcaatttcactcgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat Alignment from GeneWise AATGACTGCTTCCCTTGTCCAGAACAAGGGTGTCCCAAAATGGGGCACTATGCTGATCAATTTGAGGGGAAAACTGCTACTGTGGAACAAACCTTTTTCCTGAATACAGGAGACAGTGGTAACTTTACTC cataacctggaatgaaggccccccactatgagtaccacctccccctgcagAATGACTGCTTCCCTTGCCCAGAGCATGGATGCCCCAATATGGGTCACTTTGCTGACCAATTTGAGGGAAAAATTGCTACTGTGGAACAAGCCTTTTTCCTGAACACGGGGGACAGCAGCAATTTCACTCgtacgtgcccatttcttgtttcttgcttagtagtattggtgtcagcatat #### Pola2_ID1329_12 --> 0 - 0 Original Alignment TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc Alignment from CESAR TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc Alignment from Spaln_aa2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc Alignment from Spaln_nt2Genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc Alignment from Pairagon TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc Alignment from Exonerate_protein2genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc Alignment from Exonerate_coding2genome TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc Alignment from GeneWise TTCGGACCTTTCCTGGATGCTAAACATGAACAGGTGGAG ggtcctatgcaaggtagtagatgagcatacttaataaaaacattttttagTTTGGACCATTGCTGGATGCTAAACATGAACAGGTAGAGgtaagagcctggggataggcctggcaatatggccataaccacatttatgc #### Pola2_ID1331_10 --> 0 - 1 Original Alignment GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagGGTGTACCACTACCATTCTATCAGCCAACTGAAGAGAAGGGAggtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa Alignment from CESAR GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAg aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagGGTGTACCACTACCATTCTATCAGCCAACTGAAGAGAAGGGAggtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa Alignment from Spaln_aa2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagGGTGTACCACTACCATTCTATCAGCCAACTGAAGAGAAGGGAGgtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa Alignment from Spaln_nt2Genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagGGTGTACCACTACCATTCTATCAGCCAACTGAAGAGAAGGGAGgtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa Alignment from Pairagon GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagGGTGTACCACTACCATTCTATCAGCCAACTGAAGAGAAGGGAGgtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa Alignment from Exonerate_protein2genome GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagGGTGTACCACTACCATTCTATCAGCCAACTGAAGAGAAGGGAGgtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa Alignment from Exonerate_coding2genome aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagggtgtaccactaccattctatcagccaactgaagagaagggaggtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa Alignment from GeneWise GGCGTGCCACTTCCGTTCTATCAGCCTACTGAAGAGGAGGGAG aggtgagagtaagtgcggtaggtgcagcatttccttatttgctgtcacagGGTGTACCACTACCATTCTATCAGCCAACTGAAGAGAAGGGAGgtaaggatggtttcaaaatcttctttggtatctatgaagccagtatacaa #### Pola2_ID1334_7 --> 2 - 0 Original Alignment ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagttCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAG------GCTTCAATTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg Alignment from CESAR ttCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagttCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAGGCT------TCAATTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg Alignment from Spaln_aa2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagTTCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAGGCT------TCAATTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg Alignment from Spaln_nt2Genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagTTCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAGGCTT------CAATTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg Alignment from Pairagon TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagTTCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAGGCTTCAA------TTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg Alignment from Exonerate_protein2genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagTTCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAGGCT------TCAATTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg Alignment from Exonerate_coding2genome TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagTTCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAGGCT------TCAATTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg Alignment from GeneWise TTCTGACCAGTAAGATCGAAGAGCTCGGCAGCGAGCTGAAGGAGCATCACAAGATCGAGGCCTTTACCCCTCTCCTGGTCCCAGCGCAA ttccagcaagtcaaccttttcttaccaatgttaacattttgttttgatagTTCTGACCAGTAAAATTGAAGAACTTGGCAGTGAGCTGAAAGAACATCACAAGATTGAGGCT------TCAATTCTGGGTCCAGCACTAgtgagctgagggcgcatttgtatgtgggagggcttgtgtccactctgacg #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Spaln_nt2Genome ATGGCTATGAGTTCTTTGCCAAGAG---ACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccaggttgtagGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Pairagon GTTGTAGAAGATGGCTATGAGTTCTTTGC---CAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGT---AGGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Exonerate_protein2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Exonerate_coding2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAG---TTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc #### Ppp1r32_ID2840_11 --> 1 - 2 Original Alignment gTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAag ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagcTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAaggtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag Alignment from CESAR gTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAag ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagcTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAaggtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag Alignment from Spaln_aa2Genome GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagCTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAAGgtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag Alignment from Spaln_nt2Genome GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagCTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAAGgtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag Alignment from Pairagon GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagCTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAAGgtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag Alignment from Exonerate_protein2genome GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagCTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAAGgtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag Alignment from Exonerate_coding2genome GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagCTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAAGgtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag Alignment from GeneWise GTACTTCGAGAATATCCCCAAGGGGCTGGATCGAGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAGAAAGCAGGAGCCTACGCCCTCAGTGAGCTGAATAACCATACCCTCATGGACTCCACCCCAAATCCCACGGAGACCCTGAGGCACCTGCACCCCCATGTGGGAAG ttaatgctcccaggcaatatattaagaatttgcgctatcccctcttgtagCTACTTCGAGAATATTCCCGAGGGGTTAGATCGGGAAGGCTGGACTCGAGGTGGCATACAACCCCAAAGAGCAGGTGCACACGCTCTTAGTGAGCTGAATAACCACACCCTCATGGATTCCACGCCAAATCCCACAGAGACCCTGAAGCACCTGCATCCCCATGTAGGAAGgtgaggtggtatgactgaagccggactaagtcttggttgctggggtggag #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac #### Ppp1r32_ID2845_6 --> 2 - 0 Original Alignment atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from CESAR atCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagatCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Spaln_aa2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Spaln_nt2Genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Pairagon ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Exonerate_protein2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from Exonerate_coding2genome ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt Alignment from GeneWise ATCTCTTGCTTAAGAAGACAATTGGTTCCAAAGAAGAGACTGGCTTCACGGAAGAGTCTACCAAGAATCCCATTGTCTTCCAGCCGCCCTCACAGGCCTTTCCTGGGGACCCT cctgttggttttccttggccccccattagttctctttcctaaatgtgcagATCTCTTGCTCAAGAAAACAATTGGATCCAAGGAGGAGATTGGCTTCGTAGAAGAGTCTACAAAGAATCCTATTGTTTTCCAGCCACCTTCACAGACCTTCCCTGGGAAGCCTgtaaacgggaatggttaagggtgctgcttgaacactcacaatgctgaggt #### Ppp1r32_ID2847_4 --> 0 - 0 Original Alignment GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat Alignment from CESAR GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat Alignment from Spaln_aa2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat Alignment from Spaln_nt2Genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat Alignment from Pairagon GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat Alignment from Exonerate_protein2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat Alignment from Exonerate_coding2genome GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat Alignment from GeneWise GTCAGGAAGGTCCACTTCGACACCCAGGATCACGGGCCTCAGACTATCACAGGACTGGAGCCCAAGGAGGTTCCCCTGATCCACCAGCAGCAGGGCAAGGGCTCCACGGAGTGGGAGAACTCGCACTAT ttctatggacaacactcaagggcactgatgtctgctcttctttttttcagGACAGGAAGGTCCATTTTGGTACTCAGGATCATGGGCCTCAGACAATAATAGGATTGGAAACCAAGGAGATTCCCCTGATCCACCAACAGCAAGGGAAGGGCTCCACAGAGTGGGAGAACTTGCATTACgtaagtcaaatacctgccagggagcatatcctaaggccctgccatgccat #### Ppp6r3_ID73_20 --> 2 - 2 Original Alignment caCCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAag gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagccCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGaggtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct Alignment from CESAR caCCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAag gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagccCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGaggtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct Alignment from Spaln_aa2Genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagCCCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGAGgtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct Alignment from Spaln_nt2Genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagCCCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGAGgtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct Alignment from Pairagon CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagCCCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGAGgtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct Alignment from Exonerate_protein2genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagCCCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGAGgtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct Alignment from Exonerate_coding2genome CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagCCCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGAGgtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct Alignment from GeneWise CACCAGGCAGTATGGCCATGGAAGCCAGCTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAGGAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAG gaggagaaaggagcctgagctccaggaactctcttttgtctgccctgcagCCCCTGGTGGTATGGCCATCAAGGCCAGTTCAGATGGGGAAGAGGATGCTGAGAGTACAGATATGGTAACTGAGACTGTGATGAATGGTGGTATGAAGGAAACACTTAGCCTCACAGTAGATGCTAAGACGGAGACTACTGTCTTTAAGAGgtaagcgcttacttcaactagtcatggaagggtctgctaactagtagtct #### Ppp6r3_ID75_18 --> 2 - 2 Original Alignment caCCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGag gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagcaCCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGaggtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg Alignment from CESAR caCCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGag gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagcaCCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGaggtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg Alignment from Spaln_aa2Genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagCACCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGAGgtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg Alignment from Spaln_nt2Genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagCACCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGAGgtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg Alignment from Pairagon CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagCACCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGAGgtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg Alignment from Exonerate_protein2genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagCACCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGAGgtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg Alignment from Exonerate_coding2genome CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagCACCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGAGgtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg Alignment from GeneWise CACCCACCTGGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGTCTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCCCTGAG gttctgcagaatgaagaggttgtgggcaaaaggttttgttgtccttccagCACCCACTTGGTCGGCCAACTTTGATGTCCCAATGGAGACTACTCATGGTGCTCCTTTGGACTCTGTGGGATCAGATGTCTGGAGCACAGAGGAGCCGATGTCAACTAAAGAAACAGGCTGGGCATCCTTTTCAGAGTTCACATCCTCCTTGAGgtgagcagaggggagtaactcacagtatctgcataaggcctagtttgagg #### Ppp6r3_ID82_12 --> 2 - 0 Original Alignment atCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagatCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGT------ACTTTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca Alignment from CESAR atCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagatCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGTACT------TTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca Alignment from Spaln_aa2Genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagATCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGT------ACTTTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca Alignment from Spaln_nt2Genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagATCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGTA------CTTTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca Alignment from Pairagon ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagATCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGTA------CTTTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca Alignment from Exonerate_protein2genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagATCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGTACT------TTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca Alignment from Exonerate_coding2genome ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagATCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGTACT------TTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca Alignment from GeneWise ATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTA aaagctccctgatgaagcaatctctttaccagcaggctttgtctctttagATCTACCTGATGAAGTCAGGGAGTGGTGGGAAACATTCTGTACT------TTAGGAGAAACAAACAAGAGGAACACAGTAGATCTAgtaagttcccatgccctgttactgagacttacgggctgccacatgctgca #### Ppp6r3_ID85_9 --> 0 - 0 Original Alignment GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg Alignment from CESAR GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg Alignment from Spaln_aa2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg Alignment from Spaln_nt2Genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAG---AGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg Alignment from Pairagon GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAG---AGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg Alignment from Exonerate_protein2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg Alignment from Exonerate_coding2genome GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg Alignment from GeneWise GATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAG---AATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCAT caaaaaaacaactttggtatgttactcattctttttctttactttgtcagGACATGTTCTTCAATTACACATGGAATAACTTTTTACACACACAAGTGGAAATTTGCATTGCTCTTATTCTCGCCAGCCCTTTTGAGAATGCAGAGAAGAATGGCACCATTACTGATCAAGACTCCACTGGTGACAATCTGTTATTAAAACATgtaagtcctattctccattattgtgtccttcaaacttgcaataaattacg #### Ppp6r3_ID92_3 --> 0 - 0 Original Alignment ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc Alignment from CESAR ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc Alignment from Spaln_aa2Genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc Alignment from Spaln_nt2Genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc Alignment from Pairagon ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc Alignment from Exonerate_protein2genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc Alignment from Exonerate_coding2genome ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc Alignment from GeneWise ATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAAT cactcaaagttatgaattgacttattttactttttcctgctgcctttcagATTGTGGATTTTCTGAAAAAGAAGCATGATTTTGTGGATCTTATAATAAAGCACGTGGGAACTTCTGCTATCATGGATTTACTGCTCAGGCTCCTGACGTGTATTGAGCCTCCACAACCAAGACAAGATGTTCTGAATgtgagtccagctacaaacatttgctggtggtgttgttacctttgggactc #### Prdx3_ID13361_6 --> 1 - 0 Original Alignment aGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCAT---GGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACG tagaatggaggagttgttggcattgtctctctctctctctctctctgcagaGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACG---GATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAgtgagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt Alignment from CESAR aGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACG tagaatggaggagttgttggcattgtctctctctctctctctctctgcagaGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACGGATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAgtgagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt Alignment from Spaln_aa2Genome AGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACG tagaatggaggagttgttggcattgtctctctctctctctctctctgcagAGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACGGATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAgtgagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt Alignment from Spaln_nt2Genome AGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACG tagaatggaggagttgttggcattgtctctctctctctctctctctgcagAGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACGGATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAgtgagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt Alignment from Pairagon AGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACG tagaatggaggagttgttggcattgtctctctctctctctctctctgcagAGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACGGATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAgtgagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt Alignment from Exonerate_protein2genome AGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACG tagaatggaggagttgttggcattgtctctctctctctctctctctgcagAGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACGGATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAgtgagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt Alignment from Exonerate_coding2genome AGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACGATC tagaatggaggagttgttggcattgtctctctctctctctctctctgcagAGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACGGATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAGTGagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt Alignment from GeneWise AGGTCTCTTC---ATTATTGACCCTAATGGTGTCGTCAAGCACCTGAGTGTCAACGACCTTCCGGTGGGCCGCAGTGTGGAAGAAACACTCCGTTTGGTAAAGGCGTTCCAGTTTGTGGAGACCCATGGAGAAGTCTGCCCAGCCAACTGGACACCAGAGTCCCCTACGATC tagaatggaggagttgttggcattgtctctctctctctctctctctgcagAGGACTCTTTGTAATCATTGACCCAAATGGTGTTGTCAAACACCTGAGTGTTAATGACCTTCCAGTTGGCCGTAGTATAGAGGAAACACTCCGTTTGGTAAAAGCATTCCAGTTTGTAGAGACGGATGGAGAGGTTTGCCCAGCCAATTGGACACCAGAGTCGCCTACAGTGagcaccttgtggaacacaaattcctccgccagagctgcactgtcctt #### Prdx3_ID13362_5 --> 0 - 2 Original Alignment AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCaggtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat Alignment from CESAR AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCag gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCaggtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat Alignment from Spaln_aa2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat Alignment from Spaln_nt2Genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat Alignment from Pairagon AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat Alignment from Exonerate_protein2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat Alignment from Exonerate_coding2genome AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat Alignment from GeneWise AATGGTGGTTTGGGCCACATGAACATCACACTGTTGTCGGATATAACTAAGCAGATATCCCGAGACTACGGAGTGCTGTTGGAAAGTGCTGGCATTGCACTCAG gggcctagggccatccatgaagaacaagtgctctccaccacctgccgtagAATGGCGGTTTGGGCCACATGAACATCACTCTGGTGTCAGATATAACTAAGCAGATATCCCGAGATTACGGTGTGCTATTGGAAAGTGCTGGCATAGCACTCAGgtaagggttgtctgttgctagctggagtgactttatatatcgttgtttat #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAaggtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAaggtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAAGgtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAAGgtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAAGgtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAAGgtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAAGgtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc Alignment from GeneWise GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG ctacaaataatagggccatccttgcacccaaaaatgctttcctctttcagGTGACAGACCTCTTATTGGATGATTCACTGCTTTCTCTCTGTGGGAACCATTGGCTGAAAAGgtaaaagagaccttcagtctctcccccatacttactggttgcagggtagc #### Prkg1_ID6497_10 --> 1 - 0 Original Alignment aTATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGAC---ACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagaTATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat Alignment from CESAR aTATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATT---GACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagaTATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat Alignment from Spaln_aa2Genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATT---GACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagATATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat Alignment from Spaln_nt2Genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCAT---TGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagATATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat Alignment from Pairagon ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCAT---TGACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagATATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat Alignment from Exonerate_protein2genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATT---GACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagATATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat Alignment from Exonerate_coding2genome ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATT---GACACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagATATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat Alignment from GeneWise ATATGAAGCCGAAGCTGCCTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGAC---ACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAGCTG tcttgttatccccaatcagtaatattgaaggaccactcaaaatactacagATATGAAGCCGAGGCTGATTTCTTTGCCAACGTAAAATTGTCTGATTTCAACATAATTGATGACACACTTGGAGTTGGGGGTTTTGGACGTGTAGAACCAgtgagtgactagtgagcattctagcaatcacttctcacttctcacccaat #### Prkg1_ID6519_6 --> 0 - 0 Original Alignment ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag Alignment from CESAR ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag Alignment from Spaln_aa2Genome ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag Alignment from Spaln_nt2Genome ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag Alignment from Pairagon ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag Alignment from Exonerate_protein2genome ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag Alignment from Exonerate_coding2genome ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag Alignment from GeneWise ACCCACTATGAAAATGGAGAATATATCATCAGGCAGGGTGCAAGAGGAGACACCTTCTTCATCATCAGTAAAGGGCAG tgtccctttgtcaattactaggggtccaaataaacagctttcttctgcagACCCATTATGAAAATGAAGTATACATCATTAGGCAGGGTGCACGGGGTCACACCTTTTTCATCAGTAGTAAGGGGCAGgtacacgtgtgcatcaactgtgatgattgtagctaattactctcctgcag #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtatccctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccagggctttttttccctctctta Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaatgctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccaatccaacccttcttccccaca Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtatccctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccagggctttttttccctctctta Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtatccctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccagggctttttttccctctctta Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtatccctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccagggctttttttccctctctta Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtatccctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccagggctttttttccctctctta Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtatccctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccagggctttttttccctctctta Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAA--------------------------------------------------- CCTTGCAAGATGAGTGGGTATCCCTAATGCCTGATAGTGCTTTCCCCCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGGTGAAGCACATTTCACTGTAGACTCCCCAGGGCTTTTTTTCCCTCTCTTA #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGA---------------------------------------------------- gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAGTCAAACTGGCCATTATGTGGATATCTGCATCTTTGGAGAGAAGTGTGCG Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from GeneWise CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCtgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCTG------CTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCTG------CTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcaccttttctcattaagtcaatcaacactgtctcctcttttttctcagGAGCATACTAATGTGGTAATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACAGCAACAGATGATTCACCAGTCAAGCTTTGGGACTTACGAAAGCTGAAGAACTTTAAAATGTTGCAGTTGCACAACAACTTTGAGgtgagttttaccccctttcttttctattgctgttattgagctatcccttg #### Psat1_ID3965_4 --> 1 - 1 Original Alignment aGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAa aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagtGCAATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTagtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc Alignment from CESAR aGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAa aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagtGCAATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTagtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc Alignment from Spaln_aa2Genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagTGCAATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTAgtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc Alignment from Spaln_nt2Genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagTGCAATTCCCAACA---ACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTAgtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc Alignment from Pairagon AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagTGCAATTCCCAACA---ACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTAgtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc Alignment from Exonerate_protein2genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagTGCAATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTAgtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc Alignment from Exonerate_coding2genome AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagTGCAATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTAgtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc Alignment from GeneWise AGCTGTTCCCAACAACTACAAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCCTTAAATCTGATTGGCCTGAAAGCTGGAAGGAGTGCTGACTACGTGGTGACCGGAGCTTGGTCAGCTAAGGCTGCGGAAGAAGCCAAGAAGTTTGGAACGGTGAACATTGTCCACCCTAAACTTGGAAGTTACACAA aaaacattattgctagtatagcgatcacacatatttcttcctttttcaagTGCAATTCCCAACAAC---AAGGTGATCTTTGTACAAGGAGGTGGGTCTGGCCAGTTCAGTGCTGTCCCTCTAAATCTGATTGGTCTGAAAGCTGGAAGAAGTGCTGACTTCGTGGTGACTGGAGTGTGGTCAGCTAAGGCCACAGAAGAAGCCAAGAAGTTTGGAACAGTTAATATGGTTCATGCTAAACTTGGAAGTTACACTAgtgagttctcaaagtttaagatgaccagcaaggtgacggctagcccctgc #### Ptar1_ID5194_4 --> 1 - 2 Original Alignment gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag attttttcaaatatgacaggggatattgacggccttggctctcccttcagaAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATaggtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga Alignment from CESAR gAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACag attttttcaaatatgacaggggatattgacggccttggctctcccttcagaAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATaggtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga Alignment from Spaln_aa2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG attttttcaaatatgacaggggatattgacggccttggctctcccttcagAAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga Alignment from Spaln_nt2Genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG attttttcaaatatgacaggggatattgacggccttggctctcccttcagAAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga Alignment from Pairagon GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG attttttcaaatatgacaggggatattgacggccttggctctcccttcagAAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga Alignment from Exonerate_protein2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG attttttcaaatatgacaggggatattgacggccttggctctcccttcagAAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga Alignment from Exonerate_coding2genome GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG attttttcaaatatgacaggggatattgacggccttggctctcccttcagAAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga Alignment from GeneWise GAAAGAGCTCATCCTCTCTGGCACTTTAAGTCCAATTAAGGATCTGCATCTGGGAAAACTGGCCTTAACTAAGTTTCCTAAGAGTCCAGAGACATGGATTCACAG attttttcaaatatgacaggggatattgacggccttggctctcccttcagAAAGGAGCTCATCCTGTCTGGCACTTTAAGCCCGATTAGGGATCTTCATCTGGGGAAGCTGGCCTTGACAAAATTTCCTAAGAGTCCAGAGACATGGATTCATAGgtgagtttaaagtgatgtattcctgttgacaatgtaagcacaagcttcga #### Pten_ID6742_2 --> 2 - 2 Original Alignment atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagatATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGaggtgagcacagttgacctgttttatttcctatatcagtcattacattgatg Alignment from CESAR atATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAag agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagatATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGaggtgagcacagttgacctgttttatttcctatatcagtcattacattgatg Alignment from Spaln_aa2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagATATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagcacagttgacctgttttatttcctatatcagtcattacattgatg Alignment from Spaln_nt2Genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagATATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagcacagttgacctgttttatttcctatatcagtcattacattgatg Alignment from Pairagon ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagATATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagcacagttgacctgttttatttcctatatcagtcattacattgatg Alignment from Exonerate_protein2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagATATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagcacagttgacctgttttatttcctatatcagtcattacattgatg Alignment from Exonerate_coding2genome ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagATATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagcacagttgacctgttttatttcctatatcagtcattacattgatg Alignment from GeneWise ATATTTATCCAAATATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGTGTATACAGGAACAATATTGATGATGTAGTAAG agttatggctagtgtggtatggactgaaaccctgtattatgcctctgcagATATCTATCCGAACATTATAGCTATGGGTTTTCCTGCGGAAAGACTTGAAGGTGTGTACAGGAACAATATTGATGATGTAGTGAGgtgagcacagttgacctgttttatttcctatatcagtcattacattgatg #### Pten_ID6744_3 --> 1 - 2 Original Alignment gTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATct tttctttcaagagactaagaagatgaactcattcactctggctcttataggTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACctgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa Alignment from CESAR gTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATct tttctttcaagagactaagaagatgaactcattcactctggctcttataggTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACctgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa Alignment from Spaln_aa2Genome GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT tttctttcaagagactaagaagatgaactcattcactctggctcttatagGTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACCTgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa Alignment from Spaln_nt2Genome GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT tttctttcaagagactaagaagatgaactcattcactctggctcttatagGTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACCTgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa Alignment from Pairagon GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT tttctttcaagagactaagaagatgaactcattcactctggctcttatagGTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACCTgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa Alignment from Exonerate_protein2genome GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT tttctttcaagagactaagaagatgaactcattcactctggctcttatagGTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACCTgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa Alignment from Exonerate_coding2genome GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT tttctttcaagagactaagaagatgaactcattcactctggctcttatagGTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACCTgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa Alignment from GeneWise GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT tttctttcaagagactaagaagatgaactcattcactctggctcttatagGTTCCTGGACTCAAAGTATAAAAACCATTACAAAGTATATAACCTgtgagtcgttatctaatagtgggtcaatgtttctgaatagatagatataa #### Pten_ID6746_4 --> 1 - 1 Original Alignment aTGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAg aaaatacaaagcagggagtaactttaagcacattggcttctcttttccaggTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAggtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga Alignment from CESAR aTGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAg aaaatacaaagcagggagtaactttaagcacattggcttctcttttccaggTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAggtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga Alignment from Spaln_aa2Genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatacaaagcagggagtaactttaagcacattggcttctcttttccagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga Alignment from Spaln_nt2Genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatacaaagcagggagtaactttaagcacattggcttctcttttccagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga Alignment from Pairagon ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatacaaagcagggagtaactttaagcacattggcttctcttttccagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga Alignment from Exonerate_protein2genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatacaaagcagggagtaactttaagcacattggcttctcttttccagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga Alignment from Exonerate_coding2genome ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatacaaagcagggagtaactttaagcacattggcttctcttttccagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga Alignment from GeneWise ATGTGCTGAGAGACATTATGACACCGCCAAATTTAACTGCAGAG aaaatacaaagcagggagtaactttaagcacattggcttctcttttccagGTGTGCTGAGAGGCATTATGACACCACCAAATTTAACTGCAGAGgtaagtatcgcatttcaaaataagtacagtaataagacaatgatagagga #### Pten_ID6748_6 --> 0 - 1 Original Alignment GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCa tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCagtgacggctatcctccaaagctgattctaaattgtataagtagatgtata Alignment from CESAR GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCa tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCagtgacggctatcctccaaagctgattctaaattgtataagtagatgtata Alignment from Spaln_aa2Genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCAgtgacggctatcctccaaagctgattctaaattgtataagtagatgtata Alignment from Spaln_nt2Genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCAgtgacggctatcctccaaagctgattctaaattgtataagtagatgtata Alignment from Pairagon GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCAgtgacggctatcctccaaagctgattctaaattgtataagtagatgtata Alignment from Exonerate_protein2genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCAgtgacggctatcctccaaagctgattctaaattgtataagtagatgtata Alignment from Exonerate_coding2genome GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCAgtgacggctatcctccaaagctgattctaaattgtataagtagatgtata Alignment from GeneWise GGAGTCACAATTCCCAGTCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCCGTGGCACTGCTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCA tcctttttttttttaccccccttttcccgtctatgccttcttgtccccagGGAGTCTCAATTCCCAGCCAGAGGCGCTATGTATATTATTATAGCTACCTGCTAAAAAATCACCTGGATTACAGACCTGTGGCACTGCTGTTCCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGTGGAACTTGCAgtgacggctatcctccaaagctgattctaaattgtataagtagatgtata #### Pygm_ID1679_3 --> 0 - 1 Original Alignment CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTAGCAggtaagactactgcttacagaggtgtggtatttgcagcctttaggtttata Alignment from CESAR CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTAGCAggtaagactactgcttacagaggtgtggtatttgcagcctttaggtttata Alignment from Spaln_aa2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTAGCAGgtaagactactgcttacagaggtgtggtatttgcagcctttaggtttata Alignment from Spaln_nt2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTAGCAGgtaagactactgcttacagaggtgtggtatttgcagcctttaggtttata Alignment from Pairagon CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTAGCAGgtaagactactgcttacagaggtgtggtatttgcagcctttaggtttata Alignment from Exonerate_protein2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTAGCAGgtaagactactgcttacagaggtgtggtatttgcagcctttaggtttata Alignment from Exonerate_coding2genome cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagctgggcttggacatggaggagttggaggagattgaggaggatgcagggttgggcaatgggggcctgggacgcctagcaggtaagactactgcttacagaggtgtggtatttgcagcctttaggtttata Alignment from GeneWise CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTG------------------------------------------------------ cggcgtctatgtaagcatttgggttttatgtgtgtgactgttctctctagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTAGCAGGTAAGACTACTGCTTACAGAGGTGTGGTATTTGCAGCCTTTAGGTTTATA #### Pygm_ID1681_5 --> 0 - 0 Original Alignment ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgcttcgagccacccgtcattggcactgtcttccactgtagATGGAAGAAGCAGATGAC---------------------TGGGAAAAAGCTCAGCCTGAATTCATGTTGCCCGTCCACTACTGTGGTCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca Alignment from CESAR ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgcttcgagccacccgtcattggcactgtcttccactgtagATGGAAGAAGCAGATGAC---------------------TGGGAAAAAGCTCAGCCTGAATTCATGTTGCCCGTCCACTACTGTGGTCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca Alignment from Spaln_aa2Genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgcttcgagccacccgtcattggcactgtcttccactgtagATGGAAGAAGCAGATGAC---------------------TGGGAAAAAGCTCAGCCTGAATTCATGTTGCCCGTCCACTACTGTGGTCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca Alignment from Spaln_nt2Genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgcttcgagccacccgtcattggcactgtcttccactgtagATGGAAGAAGCAGATGA---------------------CTGGGAAAAAGCTCAGCCTGAATTCATGTTGCCCGTCCACTACTGTGGTCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca Alignment from Pairagon ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgcttcgagccacccgtcattggcactgtcttccactgtagATGGAAGAAGCAGATGA---------------------CTGGGAAAAAGCTCAGCCTGAATTCATGTTGCCCGTCCACTACTGTGGTCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca Alignment from Exonerate_protein2genome ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgcttcgagccacccgtcatTGGCACTGTCTTCCACTGTAGATGGAAGAAGCAGATGACTGGGAAAAAGCTCAGCCTGAATTCATGTTGCCCGTCCACTACTGTGGTCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca Alignment from Exonerate_coding2genome aacagcaagtgcttcgagccacccgtcattggcactgtcttccactgtagatggaagaagcagatgactgggaaaaagctcagcctgaattcatgttgcccgtccactactgtggtcgagtagaacacaccagccaaggtggcaaatgggtatacacacaggtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca Alignment from GeneWise ATGGAAGAAGCTGATGACTGGCTTCGCTATGGCAACCCCTGGGAGAAGGCCCGCCCAGAGTTCACGCTGCCTGTGCACTTCTATGGCCGAGTGGAGCACACCAGCCAGGGTGCCAAGTGGGTGGACACACAG aacagcaagtgcttcgagccacccgtcattggcactgtcttccactgtagATGGAAGAAGCAGATGACTGG---------------------GAAAAAGCTCAGCCTGAATTCATGTTGCCCGTCCACTACTGTGGTCGAGTAGAACACACCAGCCAAGGTGGCAAATGGGTATACACACAGgtgagtgtcattattggtgtacgtggttagagggcagggggatggtctca #### Pygm_ID1682_6 --> 0 - 1 Original Alignment GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACt ttcagaatttgtagtcctccagtgaaacggtgtcatttcatgtctcccagGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACtgtgagtccatctcttgcagttaacactgagtggggatctccccttcttgc Alignment from CESAR GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACt ttcagaatttgtagtcctccagtgaaacggtgtcatttcatgtctcccagGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACtgtgagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcac Alignment from Spaln_aa2Genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ttcagaatttgtagtcctccagtgaaacggtgtcatttcatgtctcccagGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtgagtccatctcttgcagttaacactgagtggggatctccccttcttgc Alignment from Spaln_nt2Genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ttcagaatttgtagtcctccagtgaaacggtgtcatttcatgtctcccagGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtgagtccatctcttgcagttaacactgagtggggatctccccttcttgc Alignment from Pairagon GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ttcagaatttgtagtcctccagtgaaacggtgtcatttcatgtctcccagGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtgagtccatctcttgcagttaacactgagtggggatctccccttcttgc Alignment from Exonerate_protein2genome GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ttcagaatttgtagtcctccagtgaaacggtgtcatttcatgtctcccagGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtgagtccatctcttgcagttaacactgagtggggatctccccttcttgc Alignment from Exonerate_coding2genome ACCAGCCAGGGTGCCAAGTGGGTGGACACACAGGTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ttcagaatttgtagtccTCCAGTGAAACGGTGTCATTTCATGTCTCCCAGGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtgagtccatctcttgcagttaacactgagtggggatctccccttcttgc Alignment from GeneWise GTAGTGCTGGCTATGCCCTATGACACTCCTGTGCCCGGCTATCGGAACAACGTCGTCAACACCATGCGCCTCTGGTCGGCCAAGGCACCTAACGACTTCAACCTCAAGGACT ttcagaatttgtagtcctccagtgaaacggtgtcatttcatgtctcccagGTAGTACTTGCTATGCCCTATGACACTCCTGTACCAGACTATCGGAACAATGTTGTCAACACCATGCGCCTCTGGTCATCCAAGGCACCTAATGACTTCAACCTCAAGGACTgtgagtccatctcttgcagttaacactgagtggggatctccccttcttgc #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atacccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagtcAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagtcAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atacccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atacccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atacccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atacccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atacccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt Alignment from GeneWise TCAATGTTGGCGGCTACATCCAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT atacccatctcttgcagttaacactgagtgtatgtatgtaatgttcacagTCAATGTTGGTGGCTACATTCTGGCTGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtcagtcaccctccaccagaggcaataaacctagggaaccatgaaggggt #### Pygm_ID1688_12 --> 1 - 0 Original Alignment cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagcTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact Alignment from CESAR cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagcTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact Alignment from Spaln_aa2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagCTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact Alignment from Spaln_nt2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagCTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact Alignment from Pairagon CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagCTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact Alignment from Exonerate_protein2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagCTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact Alignment from Exonerate_coding2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagCTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact Alignment from GeneWise CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gtgacagcactgattatataccaggtacaagaatggaaaatttcccccagCTTCCAAGACTTTTATCAGCTGGAGCCTCACAAGTTCCAAAACAAAACAAACGGCATTACCCCTCGGCGCTGGCTCGTGCTATGTAACCCTGCACTTGTGGAGGTTATTGCAGAGgtgagagttcaaggtgtaattgatactactttctgaagtaatctcagact #### Pygm_ID1693_17 --> 2 - 2 Original Alignment ttATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACC---------GCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAACTTC---------------TTCATCTTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAgg tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagttATTCCTGCA---GATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAgggtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg Alignment from CESAR ttATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACC---------GAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGAGGAGAAC------------TTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAgg tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagttATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAgggtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg Alignment from Spaln_aa2Genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACC---------GCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagTTATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg Alignment from Spaln_nt2Genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACCG---------AGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGGGA---------GGA---GAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagTTATTC---CTGCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg Alignment from Pairagon TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTC---------CACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGG------------GGAGGAGAACTTCTTCAT---CTTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagTTATTC---CTGCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg Alignment from Exonerate_protein2genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCC---------ACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagTTATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg Alignment from Exonerate_coding2genome TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCC---------ACCGCGGGCACCGAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagTTATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg Alignment from GeneWise TTATTCCCGCCGCCGACCTCTCAGAGCAGATCTCCACCGCGGGCACC---------GAGGCCTCGGGCACTGGCAACATGAAGTTCATGCTCAATGGGGCTCTGACCATCGGCACCATGGACGGTGCCAACGTGGAGATGGCAGAGGAGGCGGGG------------GAGGAGAACTTCTTCATC---TTCGGCATGCGAGTGGAGGACGTGGAAAGGCTGGACCAGAGAGG tctaccttgatcatgtctgcatgggacactctctgtcgcctttctggtagTTATTCCT---GCAGATCTATCAGAACAGATCTCCACTGCTGGCACTGCTGGCACTGAGGCCCCAGGTACGGGCAATATGAAGTTCATGCTCAATGGGGCTCTGACCATTGGGACCATGGATGGGGCCAATGTAAAAATGGCTGAGGAGGTTGGGGAAAAGAACTTGGAAAAGAACTTCTTCATCGCCTTTGGCATGCGGGTGGAGGATGTGGAAAGGCTGGATCAGAGAGGgtgggtgggtaggatgccagactggctagagcttgttgggtctactaagg #### Pygm_ID1694_18 --> 1 - 2 Original Alignment gTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACcg ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttaggTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACccgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga Alignment from CESAR gTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACcg ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttaggTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACccgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga Alignment from Spaln_aa2Genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttagGTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACCCgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga Alignment from Spaln_nt2Genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttagGTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACCCgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga Alignment from Pairagon GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttagGTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACCCgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga Alignment from Exonerate_protein2genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttagGTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACCCgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga Alignment from Exonerate_coding2genome GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttagGTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACCCgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga Alignment from GeneWise GTACAATGCCCAGGAGTACTACGACCGAATTCCTGAGCTTCGGCAGATCATCGAACAGCTAAGCAGCGGCTTCTTCTCCCCCAAGCAGCCTGACCTGTTCAAGGACATTGTCAATATGCTCATGCACCATGACCG ctttatgtggggcaggatagtactgtggtgccggtttccttcatgtttagGTACAATGCTAAGGAATACTATGACCCAATACCTGAACTTCGCCAGATCATCAAACATTTAAGCAGTAGCTTCTTCTCCCCCAAACAGCCTGACTTGTTCAAGGACATTGTCAACATGCTTATACGCCATGACCCgtgagttgtattcctggtctgggttagacacagacaatcgggcacataga #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagaTTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagaTTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG aacctaacatttcctcttacagatctgcacttctaaatgtgtatttctagATTTAAAGTGTTTGTGGATCACGAGGAGTATATTAAATGTCAGGACAAAGTCAGTGGGTTATATAATgtgagttagtgttcagtaaccagggatggggaagacccattgctcttggc #### Pyroxd2_ID8603_5 --> 0 - 0 Original Alignment AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from CESAR AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Spaln_aa2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Spaln_nt2Genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Pairagon AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Exonerate_protein2genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from Exonerate_coding2genome AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc Alignment from GeneWise AAACACGGGCTGAAACTTCATCTGAGAGACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACACTGAACAGGCTGCCCAGGTCCCTTCTGCTGGGCACAGATATGGCTGCAAACCAGAAGGAAATCTCTCAGTTCTCACGGAAGGATGCTCAG aaaactaaaacatgggccactcagatgtagtgttgtttccctgtgccaagAAACATGGACTGAAACTTCATTTGCGAGATCCTTACTCTTTCACACCCATGGTGGAGGAGGGCACCCTCAATAGGCTGCCTAGGTCACTGCTACTGGGTACAGACATGGCTGCAAACCAGGAAGAAATCTCTCAGTTCTCACAGAAGGATGCACAGgtgagtaaagtggttacaaaccaaagcttcagtctacacacagccatctc #### R3hcc1l_ID8552_5 --> 2 - 1 Original Alignment agTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAg ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagaaTTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAggtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg Alignment from CESAR agTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAg ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagaaTTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAggtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg Alignment from Spaln_aa2Genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAGgtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg Alignment from Spaln_nt2Genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAGgtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg Alignment from Pairagon AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAGgtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg Alignment from Exonerate_protein2genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAGgtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg Alignment from Exonerate_coding2genome AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAGgtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg Alignment from GeneWise AGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCAGAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAGGAAACTGCAGGAAGCCCGAG ttctcatttaatgcatcaccccccaatccatgacgtcatggtctccacagAATTTCTCCAGCCAGCAAAGGAACGACCCGAGACTTCAGCAGCCTTAGCCAGAAGACTCGTCATCAGTGCTCTTGGGGTTCGAAGCAAGCAGAGCAAAACTGAACATGAAGCAGAGCTCAGGAAACTTCAGGAGGCTCGAGgtcagcaattaagagcctttaaagttcacaatggcctcactatactggtg #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt #### Rab3il1_ID2651_6 --> 0 - 0 Original Alignment GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagtca Alignment from CESAR GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagccc Alignment from Spaln_aa2Genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagtca Alignment from Spaln_nt2Genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagtca Alignment from Pairagon GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagtca Alignment from Exonerate_protein2genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagtca Alignment from Exonerate_coding2genome GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagtca Alignment from GeneWise GTGGATACGACGCTGTTTGCAGAGTTCCAAGCTTGGAGAGCTTCACCTACCCTGGATAAGAGCTGCCCCTTCCTAGAAAGGGTGTACCGGGAGGACGTGGGCCCTTGCCTTGACTTCACAGTGCAGGAG tgccctgtcacacttaggagctataccctttgtgttgtgtcctttaacagGTGGATACATCACTGTTTGCAGAGTTTCAAGCTTGGAGAGCTTCACCTACTCTGGATATGAGTTGCCCCTTCCTAGAAAGGGTTTACCGGGAAGATGTGAGCCCTTGCCTAGACTTCACAGTACAGGAGgtaagtgcagaggatccgatctcgtagtgatctgtcaccctcttaagtca #### Rasgrp2_ID1704_3 --> 1 - 2 Original Alignment cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagcTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCaggtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from CESAR cTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCag agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagcTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCaggtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Spaln_aa2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Spaln_nt2Genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Pairagon CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Exonerate_protein2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Exonerate_coding2genome CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from GeneWise CTATCAGCAATCCCGGAAGGACAACTCCAATTCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt #### Rasgrp2_ID1705_4 --> 1 - 2 Original Alignment gTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTgt cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagaTACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTTA---------GGGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTgtgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa Alignment from CESAR gTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTgt cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagaTACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTTA---------GGGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTgtgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa Alignment from Spaln_aa2Genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTTA---------GGGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTGTgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa Alignment from Spaln_nt2Genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTTAG---------GGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTGTgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa Alignment from Pairagon GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTT---------AGGGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTGTgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa Alignment from Exonerate_protein2genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTTA---------GGGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTGTgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa Alignment from Exonerate_coding2genome GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTTA---------GGGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTGTgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa Alignment from GeneWise GTACTGGATCTCAGCCTTCCCAGCAGAGTTCGACTTGAACCCAGAGCTGGCTGAACAGATCAAGGAGCTGAAGGCTCTGTTAGACCAAGAAGGGAACCGCAGGCACAGCAGCCTCATCGACATCGAGAGTGT cggctgcatgtgagttgagcagactttggagaattttcttactgttgtagATACTGGATCTCATCCTTCCCAGCAGAGTTTGATTTGAACCCAGAGCTGGCAGAGCAAATCAAAGACCTGAAGGCACTTTTA---------GGGAACCATAGGCATAGCAGTCTCATAGACATTGAGAGTGTgtgagaggatggcagcatcacataatgaatggtctgcacgctacacccaa #### Rasgrp2_ID1708_7 --> 0 - 0 Original Alignment AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc Alignment from CESAR AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc Alignment from Spaln_aa2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc Alignment from Spaln_nt2Genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc Alignment from Pairagon AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc Alignment from Exonerate_protein2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc Alignment from Exonerate_coding2genome AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc Alignment from GeneWise AGGCTGCTGCAGCTGCAGAACTTCAACACGCTGATGGCCGTCGTGGGAGGCCTGAGCCACAGCTCCATCTCACGCCTCAAGGAGACCCACAGCCACGTCAGCCCTGACACCATCAAG aagggtgatctgtagtctagggataaggtccttttctgtggcaatgatagAGGCTGCTCCAGCTGCAGAACTTCAACACATTCATGGCAGTTGTGGGAGGCCTGAGCCACAGCTCCATGTCCCGGCTCAAGGAGACTCATAGCCATGTCAGCCCTGACACCATTAAGgtaactaaagttattgggcagtggttgaagattgagtgattggggatatc #### Rasgrp2_ID1713_12 --> 1 - 0 Original Alignment gGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattaggGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACAT---ACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg Alignment from CESAR gGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattaggGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACAT---ACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg Alignment from Spaln_aa2Genome GGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattagGGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACAT---ACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg Alignment from Spaln_nt2Genome GGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattagGGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACA---TACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg Alignment from Pairagon GGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattagGGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACA---TACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg Alignment from Exonerate_protein2genome GGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattagGGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACAT---ACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg Alignment from Exonerate_coding2genome GGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattagGGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACAT---ACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg Alignment from GeneWise GGATGGCTGCATCAGCCGGGAGGAGATGATTTCCTACTTCCTGCGCTCCAGCTCCGTGCTGGGAGGCCGCATGGGCTTCGTACACAACTTCCAGGAGAGTAACTCGCTACGCCCGGTTGCCTGTCGCCACTGCAAAGCTCTG caaagactttactatataatacgggctgctggggcttctctttgtattagGGATGGCTGTATCAGCCGGGAGGAGATGATCTCCTTCTATCTACGCTCCAGTGCTGTGCTGGGCGGACGAATGGGCTTTGTACACAACTTCAAGGAAAGTAACTCACTGCGGCCAGTTGCCTCACGACAT---ACAGCTCTGgtacccactccactggccagaggccaacatttccacttgaccactatctg #### Rbm20_ID11375_2 --> 1 - 0 Original Alignment tGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTA---CCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGCCAG---CCTTATGAGCTCTATGAC------CCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgctggtttatgtttttcaatgcaatagtGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTCCACCGGCTAAAGATGGCGCAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTCTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCGACTGGTGTATCCCGGCAT---GCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACGGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCAAATGCTATGGTAGTTCATATGTTCAGTGGGGTGGCACTCCCGCAGACCCCTGCCCAGCCAGCTGTAATACTTAGCCTGGGGAAGGCTGGACCCACACCAGCTACAACAGGGCTATATGACTATGGCAAAGCCAACTCTGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCGGCCTCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTATAGCCAAACAGGGCAAGATGGCCAGCCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCGGATATCACAGCAAGACCAAGTTTATGGGCTCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCCGAAGAGCCTAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGGAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAGGCTGTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCACTTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtaagttaccaaggaagggcccaggtaagagaacaattcgtcatgtgccc Alignment from CESAR tGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTA---CCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgctggtttatgtttttcaatgcaatagtGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTCCACCGGCTAAAGATGGCGCAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTCTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCGACTGGTGTATCCCGGCATGCA---TCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACGGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCAAATGCTATGGTAGTTCATATGTTCAGTGGGGTGGCACTCCCGCAGACCCCTGCCCAGCCAGCTGTAATACTTAGCCTGGGGAAGGCTGGACCCACACCAGCTACAACAGGGCTATATGACTATGGCAAAGCCAACTCTGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCGGCCTCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTATAGCCAAACAGGGCAAGATGGCCAGCCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCGGATATCACAGCAAGACCAAGTTTATGGGCTCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCCGAAGAGCCTAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGGAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAGGCTGTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCACTTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtaagttaccaaggaagggcccaggtaagagaacaattcgtcatgtgccc Alignment from Spaln_aa2Genome TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTACCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgctggtttatgtttttcaatgcaatagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTCCACCGGCTAAAGATGGCGCAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTCTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCGACTGGTGTATCCCGGCATGCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACGGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCAAATGCTATGGTAGTTCATATGTTCAGTGGGGTGGCACTCCCGCAGACCCCTGCCCAGCCAGCTGTAATACTTAGCCTGGGGAAGGCTGGACCCACACCAGCTACAACAGGGCTATATGACTATGGCAAAGCCAACTCTGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCGGCCTCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTATAGCCAAACAGGGCAAGATGGCCAGCCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCGGATATCACAGCAAGACCAAGTTTATGGGCTCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCCGAAGAGCCTAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGGAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAGGCTGTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCACTTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtaagttaccaaggaagggcccaggtaagagaacaattcgtcatgtgccc Alignment from Spaln_nt2Genome TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTAC---CTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCT---CGGCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGCCA---GCCTTATGAGCTCTATGAC------CCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgctggtttatgtttttcaatgcaatagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTCCACCGGCTAAAGATGGCGCAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTCTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCGACTGGTGTATCCCGGCA---TGCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACGGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCAAATGCTATGGTAGTTCATATGTTCAGTGGGGTGGCACTCCCGCAGACCCCTGCCCAGCCAGCTGTAATACTTAGCCTGGGGAAGGCTGGACCCACACCAGCTACAACAGGGCTATATGACTATGGCAAAGCCAACTCTGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCGGCCTCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTATAGCCAAACAGGGCAAGATGGCCAGCCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCGGATATCACAGCAAGACCAAGTTTATGGGCTCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCCGAAGAGCCTAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGGAAGCAGGGATTTGGCTGCTC---ACGTAGGACAAAGGAAGGACAGGCTGTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCACTTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtaagttaccaaggaagggcccaggtaagagaacaattcgtcatgtgccc Alignment from Pairagon TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTA---CCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCT---CGGCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAG---CCAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgctggtttatgtttttcaatgcaatagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTCCACCGGCTAAAGATGGCGCAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTCTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCGACTGGTGTATCCCGGCA---TGCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACGGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCAAATGCTATGGTAGTTCATATGTTCAGTGGGGTGGCACTCCCGCAGACCCCTGCCCAGCCAGCTGTAATACTTAGCCTGGGGAAGGCTGGACCCACACCAGCTACAACAGGGCTATATGACTATGGCAAAGCCAACTCTGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCGGCCTCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTATAGCCAAACAGGGCAAGATGGCCAGCCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCGGATATCACAGCAAGACCAAGTTTATGGGCTCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCCGAAGAGCCTAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGGAAGCAGGGATTTGGCTGCTC---ACGTAGGACAAAGGAAGGACAGGCTGTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCACTTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtaagttaccaaggaagggcccaggtaagagaacaattcgtcatgtgccc Alignment from Exonerate_protein2genome TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTG---GTACCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgctggtttatgtttttcaatgcaatagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTCCACCGGCTAAAGATGGCGCAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTCTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCGACTGGTGTATCCCGGCAT---GCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACGGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCAAATGCTATGGTAGTTCATATGTTCAGTGGGGTGGCACTCCCGCAGACCCCTGCCCAGCCAGCTGTAATACTTAGCCTGGGGAAGGCTGGACCCACACCAGCTACAACAGGGCTATATGACTATGGCAAAGCCAACTCTGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCGGCCTCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTATAGCCAAACAGGGCAAGATGGCCAGCCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCGGATATCACAGCAAGACCAAGTTTATGGGCTCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCCGAAGAGCCTAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGGAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAGGCTGTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCACTTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtaagttaccaaggaagggcccaggtaagagaacaattcgtcatgtgccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTG---GTACCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACTATGGCAAAGCCAACTCCGGCCAAGCGTATGGTTCTGAAACGGAGGGCCAGCCAGGCTTCTTGCCAGCCTCG---GCCTCAGCCACAGCATCAGGCAGTATGACCTATGAAGGGCACTATAGCCACACAGGGCAGGATGGCCAACCTGCCTTTTCTAAAGACTTCTATGGACCCAATGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGAGACGTTGGTGGGCTGTTGCAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGATTCTCAGGCCAAAACAAGCCCGATATTACAGCGGGACCCAGTTTGTGGGCTCCACCTGCCAGC---CAGCCTTATGAGCTC------TATGACCCTGAAGAGCCTACCTCAGACAGGGCCCCTCCTGCCTTTGGGTCTCGGCTTAACAACAGCAAGCAGGGATTCGGCTGCTCTTGCCGAAGGACAAAGGAGGGACAGGCTGTGCTGTCCGTGAGGCCCCTGCAGGGTCATCAACTGAACGATTTCCGAGGCTTGGCTCCACTCCACCTACCACATATCTGCAGCATCTGTGACAAGAAGGTGTTTGACTTGAAG aaggaatgctggaaatgaggactgctggtttatgtttttcaatgcaatagTGCTGCCAAACTCTTGGATAAGAGCCCTTTCTCTGTCAATAACCAGAATCCCCTGCTGACACTGCCAGCTGATGTTCAACTGGCTCAGATACAGGCTCAACTTACACTCCACCGGCTAAAGATGGCGCAAACTGCTGTTACAAATAACACTGCAGCTGCCACAGTCTTAAATGAAGTGCTCTCCAAAGTTGCCATGTCTCAACCTCTCTTTAACCAGCTCCGTCATCCATCTGTGCTTGGTACAGCACATGGTCCGACTGGTGTATCCCGGCAT---GCATCAGTTCCCAGTGCATATTTTCCCTCTACAACTATTGCCTTTTTACCCCCAAGTCAAACGGGGGGCCCAGGCCTTACAGTGGGCATTCCATGCCAGCGCCCAAATGCTATGGTAGTTCATATGTTCAGTGGGGTGGCACTCCCGCAGACCCCTGCCCAGCCAGCTGTAATACTTAGCCTGGGGAAGGCTGGACCCACACCAGCTACAACAGGGCTATATGACTATGGCAAAGCCAACTCTGGCCAAGCATATGGTTCTGAAATGGAGGGCCAACAGAGCTTCTTGCCAGCCTCAGCGGCCTCAGCTACTGCATCAGGTAGTATGACCTATGAAGGGCACTATAGCCAAACAGGGCAAGATGGCCAGCCAGCATTTTCTAAGGACTTCTATGGACCCAACGCCCAAGGGCCACACATAGCAGGTGGATTTCCAGCTGATCAGACTGGGAGCATGAAGGGACACGTTGGTGGGTTGCTACAAGGCACCAACAGCCAGTGGGAGAGGCCCCCTGGCTTCTCAGGTAAAAATAAGCCGGATATCACAGCAAGACCAAGTTTATGGGCTCCACCTGCAAGCCACCAGCCTTATGGACTCTATGAATATGATCCCGAAGAGCCTAAATCAGACAGGGCCCCCCCTGCCTTTGGCTCTCGCCTTAACAATAGGAAGCAGGGATTTGGCTGCTCA---CGTAGGACAAAGGAAGGACAGGCTGTGTTGTCTGTAAGGCCGTTGCAGAGTTATCAGTTGAATGATTTCCGCAGCTTAGCTCCACTTCACTTACCACATATCTGTAGCATCTGTGGCAAGAAGGTCTTTGACTTTGAGgtaagttaccaaggaagggcccaggtaagagaacaattcgtcatgtgccc #### Rbm20_ID11376_3 --> 0 - 2 Original Alignment GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAag tggctaatgctctacccagtttaatactatcatgcttgcttattttacagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCCTGCTGTTTTCAGAAaggtgagtactttttgggtggtgtcatccttatatggcagatgcgatttagc Alignment from CESAR GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAag tggctaatgctctacccagtttaatactatcatgcttgcttattttacagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCCTGCTGTTTTCAGAAaggtgagtactttttgggtggtgtcatccttatatggcagatgcgatttagc Alignment from Spaln_aa2Genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG tggctaatgctctacccagtttaatactatcatgcttgcttattttacagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCCTGCTGTTTTCAGAAAGgtgagtactttttgggtggtgtcatccttatatggcagatgcgatttagc Alignment from Spaln_nt2Genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG tggctaatgctctacccagtttaatactatcatgcttgcttattttacagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCCTGCTGTTTTCAGAAAGgtgagtactttttgggtggtgtcatccttatatggcagatgcgatttagc Alignment from Pairagon GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG tggctaatgctctacccagtttaatactatcatgcttgcttattttacagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCCTGCTGTTTTCAGAAAGgtgagtactttttgggtggtgtcatccttatatggcagatgcgatttagc Alignment from Exonerate_protein2genome GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG tggctaatgctctacccagtttaatactatcatgcttgcttattttacagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCCTGCTGTTTTCAGAAAGgtgagtactttttgggtggtgtcatccttatatggcagatgcgatttagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACTGGGAGCTACATGTGAAAGGGAAGCTGCATGCCCAGAAATGCCTGCTCTTCTCAGAAAG tggctaatgctctacccagtttaatactatcatgcttgcttattttacagGACTGGGAACTACATTTGAAAGGGAAACTCCATGCCCAGAAATGCCTGCTGTTTTCAGAAAGgtgagtactttttgggtggtgtcatccttatatggcagatgcgatttagc #### Rbm20_ID11378_5 --> 2 - 0 Original Alignment atTATACCTCAAATCTTGGAACATCATATGCAGCCATTCCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGT gagactaacaaacatgccactaaatttttgtttctgtgttttccatccagatTATACTTCAAATCTAGGAACATCA---------ATTCCAACAAGGGCCTTTGCACATTCAAACCCTGTATTCCCTTCAACTTCCTCGGGGACTAGTgtactgttaactttcacacattgtcaatatgtcagctgcaccactgaaac Alignment from CESAR atTATACCTCAAATCTTGGAACATCATATGCAGCCATTCCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGT gagactaacaaacatgccactaaatttttgtttctgtgttttccatccagatTATACTTCAAATCTAGGAACATCA---------ATTCCAACAAGGGCCTTTGCACATTCAAACCCTGTATTCCCTTCAACTTCCTCGGGGACTAGTgtactgttaactttcacacattgtcaatatgtcagctgcaccactgaaac Alignment from Spaln_aa2Genome ATTATACCTCAAATCTTGGAACATCATATGCAGCCATTCCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGT gagactaacaaacatgccactaaatttttgtttctgtgttttccatccagATTATACTTCAAATCTAGGAACATCA---------ATTCCAACAAGGGCCTTTGCACATTCAAACCCTGTATTCCCTTCAACTTCCTCGGGGACTAGTgtactgttaactttcacacattgtcaatatgtcagctgcaccactgaaac Alignment from Spaln_nt2Genome ATTATACCTCAAATCTTGGAACATCATATGCAGCCATTCCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGT gagactaacaaacatgccactaaatttttgtttctgtgttttccatccagATTATACTTCAAATCTAGGAACATCA---------ATTCCAACAAGGGCCTTTGCACATTCAAACCCTGTATTCCCTTCAACTTCCTCGGGGACTAGTgtactgttaactttcacacattgtcaatatgtcagctgcaccactgaaac Alignment from Pairagon ATTATACCTCAAATCTTGGAACATCATATGCAGCCATTCCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGT gagactaacaaacatgccactaaatttttgtttctgtgttttccatccagATTATACTTCAAATCTAGGAACATCA---------ATTCCAACAAGGGCCTTTGCACATTCAAACCCTGTATTCCCTTCAACTTCCTCGGGGACTAGTgtactgttaactttcacacattgtcaatatgtcagctgcaccactgaaac Alignment from Exonerate_protein2genome ATTATACCTCAAATCTTGGAACATCATATGCAGCCATTCCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGT gagactaacaaacatgccactaaatttttgtttctgtgttttccatccagATTATACTTCAAATCTAGGAACATCA---------ATTCCAACAAGGGCCTTTGCACATTCAAACCCTGTATTCCCTTCAACTTCCTCGGGGACTAGTgtactgttaactttcacacattgtcaatatgtcagctgcaccactgaaac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATTATACCTCAAATCTTGGAACATCATATGCAGCCATTCCAACGAGGGCCTTTGCTCAGTCAAACCCCGTGTTTCCTTCAGCTTCCTCTGGGACAAGT gagactaacaaacatgccactaaatttttgtttctgtgttttccatccagATTATACTTCAAATCTAGGAACATCA---------ATTCCAACAAGGGCCTTTGCACATTCAAACCCTGTATTCCCTTCAACTTCCTCGGGGACTAGTgtactgttaactttcacacattgtcaatatgtcagctgcaccactgaaac #### Rbm20_ID11380_7 --> 0 - 0 Original Alignment GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgacagcctatcgaactactatctcacactcctgtcctctacctccacagGTATTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCAATGGTACAATATTATCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagctgccctctcactcatccatttacaaagcattcatctgtttgctg Alignment from CESAR GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgacagcctatcgaactactatctcacactcctgtcctctacctccacagGTATTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCAATGGTACAATATTATCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagctgccctctcactcatccatttacaaagcattcatctgtttgctg Alignment from Spaln_aa2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgacagcctatcgaactactatctcacactcctgtcctctacctccacagGTATTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCAATGGTACAATATTATCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagctgccctctcactcatccatttacaaagcattcatctgtttgctg Alignment from Spaln_nt2Genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgacagcctatcgaactactatctcacactcctgtcctctacctccacagGTATTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCAATGGTACAATATTATCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagctgccctctcactcatccatttacaaagcattcatctgtttgctg Alignment from Pairagon GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgacagcctatcgaactactatctcacactcctgtcctctacctccacagGTATTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCAATGGTACAATATTATCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagctgccctctcactcatccatttacaaagcattcatctgtttgctg Alignment from Exonerate_protein2genome GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgacagcctatcgaactactatctcacactcctgtcctctacctccacagGTATTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCAATGGTACAATATTATCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagctgccctctcactcatccatttacaaagcattcatctgtttgctg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTTTCTTGGAGATGGCTTACACAGAAGCCGCCCAGGCTATGGTCCAGTACTACCAAGAAAAGCCTGCGATTATCAATGGCGAGAAGTTACTCATTCGCATGTCCACCAGATACAAGGAATTGCAGCTGAAG tgacagcctatcgaactactatctcacactcctgtcctctacctccacagGTATTCTTGGAGATGGCTTACACAGAAGCTGCCCAAGCAATGGTACAATATTATCAAGAAAAGCCTGCAATGATAAATGGTGAGAAGCTACTCATTCAAATGTCCACCAGGTTCAAAGAACTGCAGCTGAAGgtgagctgccctctcactcatccatttacaaagcattcatctgtttgctg #### Rbm20_ID11387_12 --> 2 - 1 Original Alignment aaAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATTCCTCTAg tcctaattccttgattcctcattccaacaatctgccttcttcctgcgcagaaAACCCCACATATATGGAGGTGATATTTCTCAATGTGCGCTCACCAGAGTTTACTGAAGCTGAGCTGAGAGAGCCCCTTCCATCACCATCCTGGGAACCAGAGGTATTTAGTGAACTTAGCATCCCTCTAggtaccacaagtccaaaggtcatcttggattttagtcctggccccacattc Alignment from CESAR aaAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATTCCTCTAg tcctaattccttgattcctcattccaacaatctgccttcttcctgcgcagaaAACCCCACATATATGGAGGTGATATTTCTCAATGTGCGCTCACCAGAGTTTACTGAAGCTGAGCTGAGAGAGCCCCTTCCATCACCATCCTGGGAACCAGAGGTATTTAGTGAACTTAGCATCCCTCTAggtaccacaagtccaaaggtcatcttggattttagtcctggccccacattc Alignment from Spaln_aa2Genome AAAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATTCCTCTAG tcctaattccttgattcctcattccaacaatctgccttcttcctgcgcagAAAACCCCACATATATGGAGGTGATATTTCTCAATGTGCGCTCACCAGAGTTTACTGAAGCTGAGCTGAGAGAGCCCCTTCCATCACCATCCTGGGAACCAGAGGTATTTAGTGAACTTAGCATCCCTCTAGgtaccacaagtccaaaggtcatcttggattttagtcctggccccacattc Alignment from Spaln_nt2Genome AAAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATTCCTCTAG tcctaattccttgattcctcattccaacaatctgccttcttcctgcgcagAAAACCCCACATATATGGAGGTGATATTTCTCAATGTGCGCTCACCAGAGTTTACTGAAGCTGAGCTGAGAGAGCCCCTTCCATCACCATCCTGGGAACCAGAGGTATTTAGTGAACTTAGCATCCCTCTAGgtaccacaagtccaaaggtcatcttggattttagtcctggccccacattc Alignment from Pairagon AAAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATTCCTCTAG tcctaattccttgattcctcattccaacaatctgccttcttcctgcgcagAAAACCCCACATATATGGAGGTGATATTTCTCAATGTGCGCTCACCAGAGTTTACTGAAGCTGAGCTGAGAGAGCCCCTTCCATCACCATCCTGGGAACCAGAGGTATTTAGTGAACTTAGCATCCCTCTAGgtaccacaagtccaaaggtcatcttggattttagtcctggccccacattc Alignment from Exonerate_protein2genome AAAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATTCCTCTAG tcctaattccttgattcctcattccaacaatctgccttcttcctgcgcagAAAACCCCACATATATGGAGGTGATATTTCTCAATGTGCGCTCACCAGAGTTTACTGAAGCTGAGCTGAGAGAGCCCCTTCCATCACCATCCTGGGAACCAGAGGTATTTAGTGAACTTAGCATCCCTCTAGgtaccacaagtccaaaggtcatcttggattttagtcctggccccacattc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAAACCCCAGGTACATGGAAGTGAAATCTCTGAACGTGAGATCGCCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCGGAGGTGTTCAGTGAACTTAGCATTCCTCTA- tcctaattccttgattcctcattccaacaatctgccttcttcctgcgcagAAAACCCCACATATATGGAGGTGATATTTCTCAATGTGCGCTCACCAGAGTTTACTGAAGCTGAGCTGAGAGAGCCCCTTCCATCACCATCCTGGGAACCAGAGGTATTTAGTGAACTTAGCATCCCTCTAGgtaccacaagtccaaaggtcatcttggattttagtcctggccccacattc #### Rbp4_ID7523_4 --> 1 - 1 Original Alignment cAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAa gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagcAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAGCC---TTTGTCCAGCGAGGAagtaagtagttggggggtggttgtctagctgtatgagatagtagggataat Alignment from CESAR cAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAa gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagcAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAGCC---TTTGTCCAGCGAGGAagtaagtagttggggggtggttgtctagctgtatgagatagtagggataat Alignment from Spaln_aa2Genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagtagttggggggtggttgtctagctgtatgagatagtagggataat Alignment from Spaln_nt2Genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAG---CCTTTGTCCAGCGAGGAAgtaagtagttggggggtggttgtctagctgtatgagatagtagggataat Alignment from Pairagon CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGTGCAG---CCTTTGTCCAGCGAGGAAgtaagtagttggggggtggttgtctagctgtatgagatagtagggataat Alignment from Exonerate_protein2genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagtagttggggggtggttgtctagctgtatgagatagtagggataat Alignment from Exonerate_coding2genome CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagtagttggggggtggttgtctagctgtatgagatagtagggataat Alignment from GeneWise CAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACTGAAGATCCTGCCAAGTTCAAGATGAAGTACTGGGGTGTAGCCTCCTTTCTCCAGCGAGGAA gtccacttagttaaaaccttttgccagcctcacccagtttctctcctcagCAACTGGGAAGTGTGTGCAGACATGGTGGGCACTTTCACAGACACCGAAGATCCTGCCAAGTTCAAGATGAATTATTGGGGT---GCAGCCTTTGTCCAGCGAGGAAgtaagtagttggggggtggttgtctagctgtatgagatagtagggataat #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGaggttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGaggttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGC---AAAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from Exonerate_coding2genome CGTTTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgCAGTTTTCAGGGCTCTGGTACACTATTGCA---AAGGATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG atcttgcaggtgggaggtgaacctagaccttgctttccattgttttgcagTTTTCAGGGCTCTGGTACACTATTGCAAAG---GATCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCCGTAGATGAGAAGGGTCATATGAGTGCCACTGCCAAGGGACAGGTACGTCTCCTGAGgttggagaccctgagtggaggcagtaccgtcactttagctaaataagaaa #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagcaTTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAggtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagcaTTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAggtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc #### Rcl1_ID6211_2 --> 2 - 1 Original Alignment atTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAg tctaatacatcatggattggggaagattcattctgcctttttcatgacagatTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAggtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct Alignment from CESAR atTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAg tctaatacatcatggattggggaagattcattctgcctttttcatgacagatTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAggtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct Alignment from Spaln_aa2Genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tctaatacatcatggattggggaagattcattctgcctttttcatgacagATTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAGgtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct Alignment from Spaln_nt2Genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tctaatacatcatggattggggaagattcattctgcctttttcatgacagATTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAGgtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct Alignment from Pairagon ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tctaatacatcatggattggggaagattcattctgcctttttcatgacagATTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAGgtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct Alignment from Exonerate_protein2genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tctaatacatcatggattggggaagattcattctgcctttttcatgacagATTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAGgtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct Alignment from Exonerate_coding2genome ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tctaatacatcatggattggggaagattcattctgcctttttcatgacagATTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAGgtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct Alignment from GeneWise ATTTTGAAGCAAGCTTTATAAGGCTATTGGATAAAATAACCAATGGTTCTCGAATTGAAATCAACCAAACAG tctaatacatcatggattggggaagattcattctgcctttttcatgacagATTTTGAGGCAGGCTTTATAAAGCTATTGGACAAAATTACCAATGGCTCTCAAGTTGCAATCAATCAAACAGgtgagtcaagaagtttgtctctgttccagagtagtacccactactgtcct #### Rcl1_ID6214_4 --> 0 - 0 Original Alignment GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta Alignment from CESAR GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta Alignment from Spaln_aa2Genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta Alignment from Spaln_nt2Genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta Alignment from Pairagon GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta Alignment from Exonerate_protein2genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta Alignment from Exonerate_coding2genome GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta Alignment from GeneWise GTTGATGTTCTTAAAGCGACAGCGCTCCCTCTACTGAAACAGTTTGGGATCGATGGAGAATCATTTGAGCTAAAG gttcacttttaatttaatgtcccaaggctcttgtcttccatctattgcagGCTGATGTTATTAAAGCAACAGCTCTCCCTTTACTCAAACAGTTTGGGATTGACAGAGACTCATTTAAGCTTAAGgtatgaatgttttgagataaatccaaacatgggacagattcagttcatta #### Rcl1_ID6218_7 --> 1 - 0 Original Alignment gTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagaTCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca Alignment from CESAR gTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagaTCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca Alignment from Spaln_aa2Genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagATCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca Alignment from Spaln_nt2Genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagATCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca Alignment from Pairagon GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagATCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca Alignment from Exonerate_protein2genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagATCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca Alignment from Exonerate_coding2genome GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagATCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca Alignment from GeneWise GTCTCCAGGCTTTGGGCTGTCGCTGGTTGCAGAGACTACCAACGGTACCTTCCTGAGTGCGGAACTGGCCTCCAATCCCCAGGGCCAGGGAGCAGCAGTGCTTCCCGAGGACCTCGGCAGGAACTGTGCAAAGCTGCTACTTGAAGAGATCTACAGG gtgttcttcatgttgtccagctttgcatccgaatttctgttcacttaaagATCTCCTGGCTTTGGGCTATCACTGGTTGCAGAGTCTACTAATGGGATCTTCTTGAGTACAGAATTGGCGTCCAACCCCCAGGGCCAGGGAGCAGCGGTCCTTCCTGAGGATCTTGGTAGGAACTGTGCAAAGCTACTACTCGAAGAGATCTACAGGgtaagtccctaggctttgttgtgcaatggaagggtcaatcataaacatca #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATaggtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATaggtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGGAACTTCTAGCAGTTCAAggtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGGAACTTCTAGCAGTTCAAggtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Exonerate_coding2genome cttcccccattttttgctttcattgatggctccacatcttgtccttgcaggctaataccaagttcaactcccgctggaccactgatgaggaacttctagcagttcaaggtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagcTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATggtacggagaagagaggaaagggattccatcttaatatggaccataaatct Alignment from CESAR cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagcTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATggtacggagaagagaggaaagggattccatcttaatatggaccataaatct Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagCTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATGgtacggagaagagaggaaagggattccatcttaatatggaccataaatct Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagCTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATGgtacggagaagagaggaaagggattccatcttaatatggaccataaatct Alignment from Pairagon CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagCTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATGgtacggagaagagaggaaagggattccatcttaatatggaccataaatct Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagCTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATGgtacggagaagagaggaaagggattccatcttaatatggaccataaatct Alignment from Exonerate_coding2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagCTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATGgtacggagaagagaggaaagggattccatcttaatatggaccataaatct Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTAGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG aaagcaaaactctccttagcaaatgtaattttttttgtctgttctcacagCTTTCAGAACCTAGGCATACAGTGTGTGAAGAAGCGAGACCTGGCACAAGCGATAAGTCAGCGAATTCAGACCAACAATAACCCATTTCATGgtacggagaagagaggaaagggattccatcttaatatggaccataaatct #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagggGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGggtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagggGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGggtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg #### Rfk_ID4225_3 --> 0 - 1 Original Alignment GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAggtatggattatatattaaacttaggcattatgagagctggtcctgcaaga Alignment from CESAR GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAg aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAggtatggattatatattaaacttaggcattatgagagctggtcctgcaaga Alignment from Spaln_aa2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtatggattatatattaaacttaggcattatgagagctggtcctgcaaga Alignment from Spaln_nt2Genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtatggattatatattaaacttaggcattatgagagctggtcctgcaaga Alignment from Pairagon GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtatggattatatattaaacttaggcattatgagagctggtcctgcaaga Alignment from Exonerate_protein2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtatggattatatattaaacttaggcattatgagagctggtcctgcaaga Alignment from Exonerate_coding2genome GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtatggattatatattaaacttaggcattatgagagctggtcctgcaaga Alignment from GeneWise GAAACACACATCATCCATACCTTCAAAGAGGACTTCTATGGGGAAATTCTCAATGTGGCCATTGTTGGCTATCTCAGACCTGAAAAGAACTTTGATTCTTTAG aaaaatcccgcctaggccatctgaatatatttttctccttccccttccagGAAACACACATCATCCATACCTTCAAGGAGGATTTCTATGGGGAGATTCTCAATGTGGCTATCGTTGGCTATTTGAAACCGGAAAAGAACTTTGATTCTTTAGgtatggattatatattaaacttaggcattatgagagctggtcctgcaaga #### Rfx3_ID5881_13 --> 0 - 2 Original Alignment GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACag cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACaggtaagaaacatttataggaatcatgatttttaccacttcctagatttggc Alignment from CESAR GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACag cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACaggtaagaaacatttataggaatcatgatttttaccacttcctagatttggc Alignment from Spaln_aa2Genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtaagaaacatttataggaatcatgatttttaccacttcctagatttggc Alignment from Spaln_nt2Genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtaagaaacatttataggaatcatgatttttaccacttcctagatttggc Alignment from Pairagon GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtaagaaacatttataggaatcatgatttttaccacttcctagatttggc Alignment from Exonerate_protein2genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtaagaaacatttataggaatcatgatttttaccacttcctagatttggc Alignment from Exonerate_coding2genome GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtaagaaacatttataggaatcatgatttttaccacttcctagatttggc Alignment from GeneWise GAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGCTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGGCAGTTTCTGCTCAAGTGGTCTTTCTACAG cagagtaggcagctgtgtgatctatgctgagactttccccttctttttagGAGCAGGCTTCCTGGGTGTGCCAGTGTGATGACAACATGGTTCAGAGACTAGAAACAGACTTCAAGATGACCCTGCAGCAGCAGAGCACTCTGGAGCAGTGGGCTGCTTGGCTGGACAATGTGATGATGCAAGCGTTGAAGCCCTATGAAGGAAGGCCCAGCTTCCCGAAGGCTGCTCGACAGTTTCTGCTCAAGTGGTCTTTCTACAGgtaagaaacatttataggaatcatgatttttaccacttcctagatttggc #### Rfx3_ID5905_2 --> 0 - 2 Original Alignment GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAat ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAatgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc Alignment from CESAR GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAat ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAatgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc Alignment from Spaln_aa2Genome GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAAT ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAATgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc Alignment from Spaln_nt2Genome GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAAT ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAATgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc Alignment from Pairagon GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAAT ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAATgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc Alignment from Exonerate_protein2genome GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAAT ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAATgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc Alignment from Exonerate_coding2genome GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAAT ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAATgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc Alignment from GeneWise GTGCAGCAGGTACAGACAGTTCAGCAGGTCCAACATGTCTACCCAGCTCAGGTGCAGTATGTGGAAGGAAGTGATACTGTCTATACCAATGGAGCAAT ggtctcatgtctacgggttccaaactttatattttattgttgttctttagGTGCAGCAGGTACAAACAGTTCAGCAGGTCCAGCATGTCTATCCAGCTCAGGTGCAGTATGTGGAAGGCAGTGATACTGTGTATACCAATGGAGCAATgtaagtttacatgtttgttgataatgtgtattccaggtcccttgcatgtc #### Rhod_ID527_4 --> 0 - 0 Original Alignment TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca Alignment from CESAR TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca Alignment from Spaln_aa2Genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca Alignment from Spaln_nt2Genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca Alignment from Pairagon TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca Alignment from Exonerate_protein2genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca Alignment from Exonerate_coding2genome TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca Alignment from GeneWise TGGTACCCAGAGGTGACACATTTCTGCAAGGGAGTGCCCATCATTGTTGTGGGCTGCAAGATAGACCTGCGTAAGGACAAGGTGCTGGTGAACAACCTGCGGAAGAAAAGACTGGAGCCCGTGACCTACCACAGG gtactaaggattccctaactgagaaggtgacagctgaattggttccatagTGGTATCCAGAGGTGACATATTTCTGTAAGGGAGTGCCAATAATTGTTGTTGGCTGCAAGATGGACCTGAGGAAGGACAAGGTGCTGGTTATTAACCTACGGAAAAAACGACTGGAGCCCGTGACCTATCACCGGgtaccaaggaagccagttatccttggtatcttcctgctctgacagtgtca #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagagTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCagtgagacacttcaaaagtatgatttcacaccaactcccctggggtgagtc Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagagTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCagtgagacacttcaaaagtatgatttcacaccaactcccctggatctcctt Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggggtgagtc Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCC---CGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGG---GCCCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggggtgagtc Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTACCCC---GACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGG---GCCCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggggtgagtc Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggggtgagtc Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggggtgagtc Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG gctagaatcaactatgggcacccctcccttgtgtgacttttgtgttaaagAGTGCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTCCTGAAGCCTCACCTATCCCTCAGCTAAAGGCTCGCTCCCCGCAGGACCTGGCCCAGGGGTCTGGAGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGAGATCTAGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCTACTGATACCTCCAGCCCCTTGTCCCTACCTGCTGTACCTCCTCCTCCTGTCCATGTGCTCCCAGGGACATCTTCAAGCCAAACTGAACGACTA---CCCCGACAGTTGCAACAGAGGGAAGGCTCAGTGGGATATCATGTTCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCACTGCCATCCCTCCAGGAAGTGGACTGCTGCTCTCCTAGCAGTTCAGAGGAGGAAGGCTCCTCGGGC---CCTACAACCTCACCATGTCTGAGCCGCCCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTCGGCTGGGCTGCCACAACACTGATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACTCAAGTTCAGGCAGGACCTGAGCCCAGGGAATTCCAGGGCATCCAAGAGGCCCTAAGTCGGGCACGAGCTATGCTAAGTGCAGAGCTGGGGCCAGAAGAGCTACTGCTACCAGAGTGGCTCAgtgagacacttcaaaagtatgatttcacaccaactcccctggggtgagtc #### Rin1_ID814_9 --> 2 - 0 Original Alignment gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgcaggaGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCAC---CTA---ACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt Alignment from CESAR gtGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgcaggaGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCACCTA------ACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt Alignment from Spaln_aa2Genome GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgcagGAGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCACCTA------ACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt Alignment from Spaln_nt2Genome AGGGTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgcag---GAGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCACCT------AACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt Alignment from Pairagon AGGGTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgcag---GAGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCACCTA------ACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt Alignment from Exonerate_protein2genome AGGGTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgCAGGAGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCACCTA------ACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt Alignment from Exonerate_coding2genome AGGGTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgCAGGAGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCACCTA------ACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt Alignment from GeneWise GTGGCTACTACCTGACCAGCCTCTCAGCCAGCCTGGCCTTGTTGAGTGGCCTAAGCCAGGCCCGAGCACTGCCACTCAGCCCAGCACAGGAGCTCCAGCGCTCCCTGGCCCTCTGGGAACAGCGCCGCCTGCCGGCCACCCACAGCTTCCAG aatccctgataaaccagccttagcaggattttctctctttgtacctgcagGAGGCTACTATCTAACCAGCCTCTCAGCCAGACTCGCCTTGCTGAGTGGTCTAAGCCAAGCTCGAGCACTGCCTCTCAGCCCTGCACAAAAGCTCCAGCCCTCCCTTGCCCTCTGGGAACAACGGCACCTA------ACCCCCAGCTTTAAAgtaagaacttcttcccaaccagttacccccacttactgaccagtatgggt #### Rnls_ID6799_4 --> 2 - 1 Original Alignment taATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAg tacccttaattatttcaaagttgaccatcagacttctttctgccctacagtaATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAggtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg Alignment from CESAR taATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAg tacccttaattatttcaaagttgaccatcagacttctttctgccctacagtaATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAggtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg Alignment from Spaln_aa2Genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaattatttcaaagttgaccatcagacttctttctgccctacagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg Alignment from Spaln_nt2Genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaattatttcaaagttgaccatcagacttctttctgccctacagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg Alignment from Pairagon TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaattatttcaaagttgaccatcagacttctttctgccctacagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg Alignment from Exonerate_protein2genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaattatttcaaagttgaccatcagacttctttctgccctacagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg Alignment from Exonerate_coding2genome TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaattatttcaaagttgaccatcagacttctttctgccctacagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg Alignment from GeneWise TAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGAGCTACTCCTCTCGCTATGCTCTGGGCCTCTTTTATGAAGTAGGCATGAAGATTGGTGTCCCTTGGTCCTGCCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAGAAGCGCAATATAG tacccttaattatttcaaagttgaccatcagacttctttctgccctacagTAATTAGTGAACGCCAGAGGGAGCAACTGAAATCTGTGACCTACTCCTCTCGCTATGCTTTAGGCCTCTTTTATGAAGTAGGCATGAAGAATGGTGTCCCTTGGTCATGTCGCTACCTCAGCAGTCACCCCTGCATATGCTTCATCTCCATTGATAATAAAAAGCGCAATATAGgtaggcctcccacaatgatgaacaatgtaggttgaggaaaatggtgtttg #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagtCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCT---TCCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCA------CCATGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG ttcagtcctccttcactacatctcattttgtctcacctttgcattttcagTCAGATTCCAAGCAATATAGAAGGATTATACCTGATTGATGGGGTTCCTTTCTCCTGCTGTAATCCCCACTCACCA------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCTCATCCACTTCTT---CCTCAGCAGCCAAACCTAAACCTGTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACGCCTGCAGGGTTTATCTGGGACATTGGGGACAATTCTGGTGATTACTTTATTGTTGCAGgtaccacatcaaggtccctaacttccatactctatttttagacctaaaac #### Rorb_ID4545_3 --> 0 - 1 Original Alignment GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATg cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATggtgaacctttccttttttgctggatgggaactgcacaatggattgatttg Alignment from CESAR GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATg cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATggtgaacctttccttttttgctggatgggaactgcacaatggattgatttg Alignment from Spaln_aa2Genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATGgtgaacctttccttttttgctggatgggaactgcacaatggattgatttg Alignment from Spaln_nt2Genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATGgtgaacctttccttttttgctggatgggaactgcacaatggattgatttg Alignment from Pairagon GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATGgtgaacctttccttttttgctggatgggaactgcacaatggattgatttg Alignment from Exonerate_protein2genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATGgtgaacctttccttttttgctggatgggaactgcacaatggattgatttg Alignment from Exonerate_coding2genome GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATGgtgaacctttccttttttgctggatgggaactgcacaatggattgatttg Alignment from GeneWise GGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGAATGTCAAGAGATG cacactcccaaattgactacacttgctttctcacttaatttccactctagGGCTTTGTCAGGAGGAGTCAGCAAAATATTACCTCTTACTTCTGCCCAAGGCAGAGAAACTGTTTAATTGACAGAACCAACCGGAACCGTTGCCAACACTGCCGCCTGCAAAAGTGTCTTGCCCTCGGAATGTCAAGAGATGgtgaacctttccttttttgctggatgggaactgcacaatggattgatttg #### Rpp30_ID7083_5 --> 0 - 0 Original Alignment AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac Alignment from CESAR AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac Alignment from Spaln_aa2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac Alignment from Spaln_nt2Genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac Alignment from Pairagon AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac Alignment from Exonerate_protein2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac Alignment from Exonerate_coding2genome AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac Alignment from GeneWise AGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCAT cattttttgataacaacattgtcgctctgtttcaaatgtcttatatatagCGAGCAACTTCATCAAGGGTCCGGCTGTATGATATCGTTGCCGTCTTTCCCAAAACAAAAAGACTTTTCCGTgtgagtagtaaatggggtggagcaccatataaggatgtatgtaggataac #### Rpp30_ID7084_6 --> 0 - 0 Original Alignment GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc Alignment from CESAR GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc Alignment from Spaln_aa2Genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc Alignment from Spaln_nt2Genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc Alignment from Pairagon GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc Alignment from Exonerate_protein2genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc Alignment from Exonerate_coding2genome GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc Alignment from GeneWise GTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTTAATGTG acagcaagtagttacttcaatactgttgtcttatcttttataatgttcagGTTGCTTGTACACATTTAGATGTGGATTTAGTCTGTATTGCTGTAACAGAGAAATTACCATTTTACTTCAAAAGACCCCCTGTGAATGTGgtaagtcttacacttagttgctttaaggctcctaggtaatttagttccgc #### Rpp30_ID7090_10 --> 1 - 1 Original Alignment aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagaGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAggtgagcaatatgttgttttcagcagcattcttatccacataacacccagt Alignment from CESAR aGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAg gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagaGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAggtgagcaatatgttgttttcagcagcattcttatccacataacacccagt Alignment from Spaln_aa2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgagcaatatgttgttttcagcagcattcttatccacataacacccagt Alignment from Spaln_nt2Genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgagcaatatgttgttttcagcagcattcttatccacataacacccagt Alignment from Pairagon AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgagcaatatgttgttttcagcagcattcttatccacataacacccagt Alignment from Exonerate_protein2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgagcaatatgttgttttcagcagcattcttatccacataacacccagt Alignment from Exonerate_coding2genome AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgagcaatatgttgttttcagcagcattcttatccacataacacccagt Alignment from GeneWise AGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAATTGCAGAGCTGTATTTCTCCATGGAG gtttcatatgctcataaactttgtgtgtccctgctcctgttgtcgctcagAGGACTGCTCTTTGGGCTTTCTGAAAATGATGGGAAGGCAGCTGTGTCCACAAATTGCAGAGCTGTATTTCTTCATGGAGgtgagcaatatgttgttttcagcagcattcttatccacataacacccagt #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCaggtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG gcaaggggttgtgacacttggcattactttgattgatttttttttttcagGGTTTTATGTATGTGGCACCTTTCGTCCTAGACAGCATCAAAGAAGGTTTCTCATTCCAGCCCAAGCTGCGTTCTCCACGATGCCTTAACAGCAGTCCCCGCACACCTATCAGgtaaggggcagggcagataaatgtctagtccatcactcccaaaaatgcac #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG cctggcctccctttgtttgctttcaccctgctgactcggccctggtacagTTACTGAAGCGAAATCCCACTCAGCAAATTGGGGGTGATTTGGGAGATGCTGCTGATGTCCAGgtaagaagatctgttgcttaacctgatggagaacacagagataacaagcg #### Rps6kb2_ID374_8 --> 2 - 2 Original Alignment gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACat ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacaggtCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACatgtaagttttgggaggggtaccacaaagggactacaactatgtgatatttt Alignment from CESAR gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACat ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacaggtCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACatgtaagttttgggaggggtaccacaaagggactacaactatgtgggcttgg Alignment from Spaln_aa2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgatatttt Alignment from Spaln_nt2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgatatttt Alignment from Pairagon GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgatatttt Alignment from Exonerate_protein2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgatatttt Alignment from Exonerate_coding2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgatatttt Alignment from GeneWise GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGTGGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgatatttt #### Rps6kb2_ID377_5 --> 0 - 1 Original Alignment GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTg gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTggtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca Alignment from CESAR GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTg gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTggtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca Alignment from Spaln_aa2Genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTGgtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca Alignment from Spaln_nt2Genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTGgtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca Alignment from Pairagon GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTGgtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca Alignment from Exonerate_protein2genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTGgtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca Alignment from Exonerate_coding2genome GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTGgtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca Alignment from GeneWise GCCAAGATTGTATGCAGTGCCAAGGACACAGCCCATACCCGGGCTGAGAGGAACATTCTAGAATCTGTGAAGCATCCCTTCATTGTAGAACTGGCCTATGCTTTCCAGACAGGTGGCAAACTCTACCTCATCCTGGAGTGCCTCAGTG gagttagtaatctggctttcccctcccacagttgtctttgtctctctcagGCCAAGATCATATGCAGTGCCAAGGACACAGCCCACACTCGGGCTGAAAGGAATATTTTGGACTCTGTGAAGCATCCCTTCATTGTAGAACTGGCTTATGCATTCCAGACAGGTGGCAAACTCTACCTCATCCTAGAGTGCCTCAGTGgtacgggaaagatggtggtgtgtacatccatgcttgtgtgatgccatcca #### Rps6kb2_ID378_4 --> 0 - 0 Original Alignment GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc Alignment from CESAR GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc Alignment from Spaln_aa2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc Alignment from Spaln_nt2Genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc Alignment from Pairagon GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc Alignment from Exonerate_protein2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc Alignment from Exonerate_coding2genome GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc Alignment from GeneWise GTGTTCCAGGTGAGAAAAGTGCAAGGCACCAACTTGGGAAAAATATATGCCATGAAGGTCTTAAGGAAG tgcgggataagggaaaagaagctattcattcacactgtctctggttctagGTCTTCCAGGTGAGAAAAGTCCAAGGCACAAACTTGGGGAAAATATATGCCATGAAGGTGTTAAGGAAGgtaagttgtttgcttagacaataaaaaaagtaaccaatgacgcccagacc #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG aatggttaaggcaaatagccaggggggccagtggctctgctctcccctagCCCCGATTAAAATGTCTCATACATATTGTGAAAACACTGTTAGCTGAACATGAAGAATTCATAGCTGCTTTGATCCCTGAGgtaagttggtaggtcagactctggattcccgagcccaaacctgaggaggg #### Rrp12_ID8307_16 --> 2 - 0 Original Alignment caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCTAAGATT---GATACACTCCAGTGGCAAgtaagggtcaactggggattgacaagggccaagcatatctgtgaagcatt Alignment from CESAR caATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagcaATGGATCTAGCTCAAGCC------ACAGTGGAGTCTAAGATT---GATACACTCCAGTGGCAAgtaagggtcaactggggattgacaagggccaagcatatctgtgaagcatt Alignment from Spaln_aa2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCTAAGATT---GATACACTCCAGTGGCAAgtaagggtcaactggggattgacaagggccaagcatatctgtgaagcatt Alignment from Spaln_nt2Genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCTAAGATTG---ATACACTCCAGTGGCAAgtaagggtcaactggggattgacaagggccaagcatatctgtgaagcatt Alignment from Pairagon CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagCAATGGATCTAGCTCAAGC------CACAGTGGAGTCTAAGAT---TGATACACTCCAGTGGCAAgtaagggtcaactggggattgacaagggccaagcatatctgtgaagcatt Alignment from Exonerate_protein2genome CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCTAAGATT---GATACACTCCAGTGGCAAgtaagggtcaactggggattgacaagggccaagcatatctgtgaagcatt Alignment from Exonerate_coding2genome tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagcaatggatctagctcaagccacagtggagtctaagattgatacactccagtggcaagtaagggtcaactggggattgacaagggccaagcatatctgtgaagcatt Alignment from GeneWise CAATGGACCTGGCTCAGGCAGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAG-------------------------------------------------- tgacaagatgctcatcatcactacctattttgtttttgtttgttaaacagCAATGGATCTAGCTCAAGCC------ACAGTGGAGTCTAAGATT---GATACACTCCAGTGGCAAGTAAGGGTCAACTGGGGATTGACAAGGGCCAAGCATATCTGTGAAGCATT #### Rrp12_ID8313_10 --> 0 - 2 Original Alignment GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag ccatagatgtgggatcctgctgactatactcccctaccctccactcccagGCATTATATGACTATGTTCCCAGTGAGAATGATCTGCAGTCCCTATTAGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACTTGGAAaggtgagtcttgtgggtgccactgtaggatccccctataggctatttgtggg Alignment from CESAR GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCag ccatagatgtgggatcctgctgactatactcccctaccctccactcccagGCATTATATGACTATGTTCCCAGTGAGAATGATCTGCAGTCCCTATTAGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACTTGGAAaggtgagtcttgtgggtgccactgtaggatccccctataggctatttgtggg Alignment from Spaln_aa2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccatagatgtgggatcctgctgactatactcccctaccctccactcccagGCATTATATGACTATGTTCCCAGTGAGAATGATCTGCAGTCCCTATTAGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACTTGGAAAGgtgagtcttgtgggtgccactgtaggatccccctataggctatttgtggg Alignment from Spaln_nt2Genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccatagatgtgggatcctgctgactatactcccctaccctccactcccagGCATTATATGACTATGTTCCCAGTGAGAATGATCTGCAGTCCCTATTAGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACTTGGAAAGgtgagtcttgtgggtgccactgtaggatccccctataggctatttgtggg Alignment from Pairagon GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccatagatgtgggatcctgctgactatactcccctaccctccactcccagGCATTATATGACTATGTTCCCAGTGAGAATGATCTGCAGTCCCTATTAGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACTTGGAAAGgtgagtcttgtgggtgccactgtaggatccccctataggctatttgtggg Alignment from Exonerate_protein2genome GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccatagatgtgggatcctgctgactatactcccctaccctccactcccagGCATTATATGACTATGTTCCCAGTGAGAATGATCTGCAGTCCCTATTAGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACTTGGAAAGgtgagtcttgtgggtgccactgtaggatccccctataggctatttgtggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACCTGGTCAG ccatagatgtgggatcctgctgactatactcccctaccctccactcccagGCATTATATGACTATGTTCCCAGTGAGAATGATCTGCAGTCCCTATTAGCCTGGCTTAAGGTCATGGAGAAAGCCCACATCAACTTGGAAAGgtgagtcttgtgggtgccactgtaggatccccctataggctatttgtggg #### Rrp12_ID8316_7 --> 0 - 1 Original Alignment ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg ctcttttgggcagttaatgatggtggaggtctagagagacatttcagcagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAggtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag Alignment from CESAR ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAg ctcttttgggcagttaatgatggtggaggtctagagagacatttcagcagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAggtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag Alignment from Spaln_aa2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ctcttttgggcagttaatgatggtggaggtctagagagacatttcagcagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag Alignment from Spaln_nt2Genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ctcttttgggcagttaatgatggtggaggtctagagagacatttcagcagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag Alignment from Pairagon ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ctcttttgggcagttaatgatggtggaggtctagagagacatttcagcagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag Alignment from Exonerate_protein2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ctcttttgggcagttaatgatggtggaggtctagagagacatttcagcagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag Alignment from Exonerate_coding2genome ATCCGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ctcttttgggcagttaatgatggtggaggtctagagagacatttcagcagATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag Alignment from GeneWise -----------------CGTAAGGCTGCTCAGCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCTGCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAG ctcttttgggcagttaatgatggtggaggtctagagAGACATTTCAGCAGATCCATAAGGCTGCTCAGCATGGTGTGAGTTCAGTTCTCAAGGGGAGTGACTTTATGTTTGGTGAAAAAGCCCTAGCCCATCATCCTGCTGCTGTCTCCACCGCTAAGTTTTGCATCCAGGAAATTGAGAAGTCTGGAGgtaagtttaccaagggccaagagtgagtgggaaacaagagtagccgtaag #### Rrp12_ID8317_6 --> 0 - 0 Original Alignment GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa Alignment from CESAR GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa Alignment from Spaln_aa2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa Alignment from Spaln_nt2Genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa Alignment from Pairagon GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa Alignment from Exonerate_protein2genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa Alignment from Exonerate_coding2genome GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa Alignment from GeneWise GTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCACCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAG gtggctgatgaccatattgactttagtagcttttaccctcttttcttcagGTCCTCTCCTGCCTGGCCATCTTCCTTCGACAGCAAGACCTTGAGGCCTGGGGCTATCCAATCACTCTTCAGGTGTACCATGGACTGCTGAGCTTCACAGTGCATGCCAAGCCAAAGgtgagtctcaagatgctttaatcccaacacacccatctgagctggaaaaa #### Rrp12_ID8320_3 --> 0 - 0 Original Alignment ATCTGCGCTGTGCTGGCTGCT---GTTACAGAGGTGATTCGATCC---CAGGGAGGCAAGGAGACGGAGACCGAGTACTTTGCTGCTCTG agagtcacaactggttttacagctaccttggtgatgtttctccttttcagATCTGTGCTGTCTTGGTTGCTGAGGTTGCAGAAGTAATCCGATCCCAGCAAGGGGGTGAGGAGACAGAGACTGAATATTTTGTGGCTCTTgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca Alignment from CESAR ATCTGCGCTGTGCTGGCTGCT---GTTACAGAGGTGATTCGATCCCAG---GGAGGCAAGGAGACGGAGACCGAGTACTTTGCTGCTCTG agagtcacaactggttttacagctaccttggtgatgtttctccttttcagATCTGTGCTGTCTTGGTTGCTGAGGTTGCAGAAGTAATCCGATCCCAGCAAGGGGGTGAGGAGACAGAGACTGAATATTTTGTGGCTCTTgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca Alignment from Spaln_aa2Genome ATCTGCGCTGTGCTGGCTGCT---GTTACAGAGGTGATTCGATCC---CAGGGAGGCAAGGAGACGGAGACCGAGTACTTTGCTGCTCTG agagtcacaactggttttacagctaccttggtgatgtttctccttttcagATCTGTGCTGTCTTGGTTGCTGAGGTTGCAGAAGTAATCCGATCCCAGCAAGGGGGTGAGGAGACAGAGACTGAATATTTTGTGGCTCTTgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca Alignment from Spaln_nt2Genome ATCTGCGCTGTGCTGGCTGCTG---TTACAGAGGTGATTCGATCCCAG---GGAGGCAAGGAGACGGAGACCGAGTACTTTGCTGCTCTG agagtcacaactggttttacagctaccttggtgatgtttctccttttcagATCTGTGCTGTCTTGGTTGCTGAGGTTGCAGAAGTAATCCGATCCCAGCAAGGGGGTGAGGAGACAGAGACTGAATATTTTGTGGCTCTTgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca Alignment from Pairagon ATCTGCGCTGTGCTGGCTGCT---GTTACAGAGGTGATTCGATCCCAG---GGAGGCAAGGAGACGGAGACCGAGTACTTTGCTGCTCTG agagtcacaactggttttacagctaccttggtgatgtttctccttttcagATCTGTGCTGTCTTGGTTGCTGAGGTTGCAGAAGTAATCCGATCCCAGCAAGGGGGTGAGGAGACAGAGACTGAATATTTTGTGGCTCTTgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca Alignment from Exonerate_protein2genome ATCTGCGCTGTGCTGGCTGCT---GTTACAGAGGTGATTCGATCC---CAGGGAGGCAAGGAGACGGAGACCGAGTACTTTGCTGCTCTG agagtcacaactggttttacagctaccttggtgatgtttctccttttcagATCTGTGCTGTCTTGGTTGCTGAGGTTGCAGAAGTAATCCGATCCCAGCAAGGGGGTGAGGAGACAGAGACTGAATATTTTGTGGCTCTTgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca Alignment from Exonerate_coding2genome agagtcacaactggttttacagctaccttggtgatgtttctccttttcagatctgtgctgtcttggttgctgaggttgcagaagtaatccgatcccagcaagggggtgaggagacagagactgaatattttgtggctcttgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca Alignment from GeneWise ATCTGCGCTGTGCTGGCTGCT---GTTACAGAGGTGATTCGATCC---CAGGGAGGCAAGGAGACGGAGACCGAGTACTTTGCTGCTCTG agagtcacaactggttttacagctaccttggtgatgtttctccttttcagATCTGTGCTGTCTTGGTTGCTGAGGTTGCAGAAGTAATCCGATCCCAGCAAGGGGGTGAGGAGACAGAGACTGAATATTTTGTGGCTCTTgtgtgggtgtctgctgactgagtggattccatgttctggacagccagtca #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gatgcaagaagtcttcagaggacctgatgccccactgtctgtacttctagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAGAGACGGGTATAAGCCTGACGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtgagttgagactctggaaataatcaatccacttgcaacagtgtatggga #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAaggtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAaggtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttagtcatcacattggtgcttgggaggcttctaactattcttctatttagGTGACCTTCAAAAAGTCCAAGCGGAGAGTGAAAAAAACCAGGAAGAAGGAGCAGGAGGTGATAATGCGGGCTGACGACTTACTGCCTCTGGGTGATCAGACACAGGATGGG---TTTGGATCAAGgtgaggatggctgcagtagtaggtatgaggtggagaaattcaaaagacat #### Scd1_ID9002_5 --> 1 - 1 Original Alignment gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGg tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGggtacagtgctgaattatttattttgttccaacaatctgctttctcagatc Alignment from CESAR gTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGg tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacaggTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGggtacagtgctgaattatttattttgttccaacaatctgctttctcagatc Alignment from Spaln_aa2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGGgtacagtgctgaattatttattttgttccaacaatctgctttctcagatc Alignment from Spaln_nt2Genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGGgtacagtgctgaattatttattttgttccaacaatctgctttctcagatc Alignment from Pairagon GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGGgtacagtgctgaattatttattttgttccaacaatctgctttctcagatc Alignment from Exonerate_protein2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGGgtacagtgctgaattatttattttgttccaacaatctgctttctcagatc Alignment from Exonerate_coding2genome GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGGgtacagtgctgaattatttattttgttccaacaatctgctttctcagatc Alignment from GeneWise GTACTACAAGCCCGGCCTCCTGCTGATGTGCTTCATCCTGCCCACGCTGGTGCCCTGGTACTGCTGGGGCGAGACTTTTGTAAACAGCCTGTTCGTTAGCACCTTCTTGCGATACACTCTGGTGCTCAACGCCACCTGGCTGGTGAACAGTGCCGCGCATCTCTATGGATATCGCCCCTACGACAAGAACATTCAATCCCGGGAGAATATCCTGGTTTCCCTGGGTGCCGTGG tttcaattcatgaactgttgatccagacctgaatgaaatcttgtttacagGTACTACAGGCCCAGCCTCCTACTGATGTGCTTCATCCTGCCCACACTCGTACCTTGGTACTGCTGGGATGAAACTTTTGTAAACAGCCTATTTGTTAGTACCTTCTCTCGCTATACTTTGGTACTTAATGCTACTTGGCTGGTGAATAGTGCTGCACATCTCTACGGATACCGTCCTTATGTCAAGAACATTGAATCTCAGGAGAATATTCTTGTTCCCCTAGGTGCTGTGGgtacagtgctgaattatttattttgttccaacaatctgctttctcagatc #### Scd2_ID8988_4 --> 0 - 2 Original Alignment AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGaggtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga Alignment from CESAR AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGag cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGaggtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga Alignment from Spaln_aa2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGAGgtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga Alignment from Spaln_nt2Genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGAGgtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga Alignment from Pairagon AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGAGgtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga Alignment from Exonerate_protein2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGAGgtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga Alignment from Exonerate_coding2genome AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGAGgtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga Alignment from GeneWise AATGACGTGTATGAATGGGCCCGAGATCACCGCGCCCACCACAAGTTCTCAGAAACACACGCCGACCCTCACAATTCCCGCCGTGGCTTCTTTTTCTCTCACGTGGGTTGGCTGCTTGTGCGCAAACACCCGGCTGTCAAAGAGAAGGGCGGAAAACTGGACATGTCTGACCTGAAAGCCGAGAAGCTGGTGATGTTCCAGAGGAG cttcccctttgtaactcctagcccccataagacactggctctttcttcagAATGATGTCTATGAATGGGCACGAGATCATTGTGACCACCACAAGTTCTCCGAAACACATGCTGACCCTCACAATTCACACCGGGGCTTCTTTTACTCTCATGTGGGTTGGCTGCTTGTCCGCAAACACCCAGCTGTCAAAGAGAAGGGTGGAAAGCTGGATATGTCTGCCCTGAAGGCTGCAGAACTAGTGATGTTCCAGAGGAGgtgagttgaagccaaagctaatgctatgaaaatgaaaaggtactagggga #### Scd3_ID8974_3 --> 2 - 0 Original Alignment cgTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagcaTCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc Alignment from CESAR cgTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagcaTCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc Alignment from Spaln_aa2Genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagCATCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc Alignment from Spaln_nt2Genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagCATCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAAC------AGCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc Alignment from Pairagon CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagCATCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAAC------AGCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc Alignment from Exonerate_protein2genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagCATCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc Alignment from Exonerate_coding2genome CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagCATCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc Alignment from GeneWise CGTTTGTCTACTATGTGATCAGTATTGAGGGCATTGGAGCCGGAGTCCATCGCCTGTGGAGCCACAGAACGTACAAGGCACGCCTGCCCCTGCGGATCTTCCTCATCATTGCCAACACCATGGCGTTCCAG ttgcaagcaatttttattctttaatcaatcctgtcctggtacctctgcagCATCTATTCACTATGTGATAACTGTTGAGGGTATTGGAACCAGACTCCATCATCTCTGGAGTCACAGAACA------GCACACCTGCCACTGGAGATCTTCCTCATCATTGCTAATACAATGGCATTTCAAgtagggagatgatgttttgtttctatgtctttgctttatacatgatcccc #### Sec31b_ID9036_16 --> 2 - 0 Original Alignment acATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagacATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga Alignment from CESAR acATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagacATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga Alignment from Spaln_aa2Genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga Alignment from Spaln_nt2Genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga Alignment from Pairagon ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga Alignment from Exonerate_protein2genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga Alignment from Exonerate_coding2genome ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga Alignment from GeneWise ACATGCTGGGAACTCGAATGGAGCAGGAGGGAGGCAGGGCACTCACCTCTGAAGCCAGACTCTGCTACGTGTGCTCAGGGAGTGTGGAGCGGCTGGTAGAGAGCTGGGCAAAATTCCAGCAAGCCTCGAGCCCCATGGCTCTGCAG atttaagattcccccccaaagatggtaaactattccttctttcccctcagACATGCTGGGAACTCGAATGGAACGGGAGGGAGGCAGGGCACTCACATCTGAAGCTAGGCTCTGCTACATTTGCTCAGGAAGTGTAGAGCGGTTGGTAGAGAGCTGGGCGAAATTCCAACAAGCCTCAAGCCCGATGGCTTTGCAAgtaagactctctacaaagttctagtcactcgctaagctcctcgaatgaga #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG cgcaggccacttgggtgatccagctggttaacagtgctctcattttcaagGTAGACACCTGCCTAAAAAGTGACTCAAAATCACAGGAGAGCCCTCAGCTTGAGGCAGTTGACCTCAAAAGTGACAGAGCACATAGCCCTTGTGCTCAGgtgggtttgaagtccttgcttcttgcttttgggagccaacatgttcccta #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG agttttacctcccagatttctgaactgataccatgcctctacacttatagGGAGATCTGGCTGGGGAAGAAATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCGCAGTATGAGACATTACGGGGAGTCTGCAGTCTTAATGCTGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtaagactggagaatgggcacagacagcgggtaaggacaaaagagctgat #### Sf1_ID1656_2 --> 2 - 1 Original Alignment acTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAg tcagcaggcaagagccagcctggcagaagtctatctggtctccactccagatTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAggtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt Alignment from CESAR acTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAg tcagcaggcaagagccagcctggcagaagtctatctggtctccactccagatTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAggtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt Alignment from Spaln_aa2Genome ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG tcagcaggcaagagccagcctggcagaagtctatctggtctccactccagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAGgtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt Alignment from Spaln_nt2Genome ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG tcagcaggcaagagccagcctggcagaagtctatctggtctccactccagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAGgtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt Alignment from Pairagon ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG tcagcaggcaagagccagcctggcagaagtctatctggtctccactccagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAGgtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt Alignment from Exonerate_protein2genome ACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG tcagcaggcaagagccagcctggcagaagtctatctggtctccactccagATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAGgtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt Alignment from Exonerate_coding2genome GACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG tcagcaggcaagagccagcctggcagaagtctatctggtctccactccaGATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAGgtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt Alignment from GeneWise GCGACCGGAGCGAACGCCACGCCGCTGGACTTCCCAAGTAAGAAGAGGAAGAGGAGCCGATGGAACCAAGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCCCCTGGACTGACTCGGGAACAGGAAAGAGCTTACATAG cctggcagaagtctatctggtc---------------TCCACTCCA---GATTTCCCAAGTAAAAAGAGAAAAAGGAGCCGATGGAATCAGGACACAATGGAGCAGAAGACAGTGATTCCAGGCATGCCTACAGTTATACCTCCTGGGCAAACTCGGAAACAGGAGAGAGCTTACATAGgtagtgagatttaatatgataccatgtgaacttacaaaaaggtattcctt #### Sf1_ID1668_9 --> 1 - 0 Original Alignment gCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttaggCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg Alignment from CESAR gCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttaggCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg Alignment from Spaln_aa2Genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttagGCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg Alignment from Spaln_nt2Genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttagGCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg Alignment from Pairagon GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttagGCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg Alignment from Exonerate_protein2genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttagGCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg Alignment from Exonerate_coding2genome GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttagGCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg Alignment from GeneWise GCCTGGCGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAATATTTGTCCCTTATGGCTGAGCTAGGGGAAGCTCCTGTCCCTGCATCTGTGGGCTCTACCTCTGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCG tagaaactggaacacagatcaactaatcccctttctcttcctgtccttagGCCTGGTGACCCTCAGTCAGCTCAGGATAAAGCACGGATGGATAAAAAATATTTGTCCCTTATGGCGGAGCTAGGAGAAGCTCCTGTCCCTGCGTCTGTGGGCTCTACCTCCGGGCCTGCCACCACGCCCCTGGCTAGTGCACCAAGACCTGCTGCTCCTGCCAGCAACCCACCACCACCTgtgagctctaaaaatcttatggtctatctcccacattcattcctgagagg #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gggctcagacttgtctctgttaagacaggattctttgttgatctctgcagTCTCTCATGTCTACAACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGTATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaagatgaccaagaacatatagggcttgaataaatgggcatggac #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGAC gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc #### Sf3b2_ID902_16 --> 0 - 0 Original Alignment AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca Alignment from CESAR AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca Alignment from Spaln_aa2Genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca Alignment from Spaln_nt2Genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca Alignment from Pairagon AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca Alignment from Exonerate_protein2genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca Alignment from Exonerate_coding2genome AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca Alignment from GeneWise AGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGCAAACCCCCAGTGGATGAGACTGGGAAGCCGCTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAG taatgtagccctaaacacctggctctatagttgtggtttctggttcacagAGCTGCTCCTTTGGATACCATGCTGGTGGCTGGGGTAGACCCCCAGTGGATGAGACTGGGAAGCCACTCTATGGGGACGTGTTTGGAACCAATGCTGCTGAGTTTCAGgtgagtgcagtcttgttggtctgagttaaaggataggacaggacagctca #### Sfr1_ID10328_2 --> 2 - 0 Original Alignment gaAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggatgacctgaacatcctagggcatgtggatttctgtttcaggaAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGATGCTCCTCAGCCAAGTGAGAATCCCCCATCCCCACCAACGTCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa Alignment from CESAR gaAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggatgacctgaacatcctagggcatgtggatttctgtttcaggaAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGATGCTCCTCAGCCAAGTGAGAATCCCCCATCCCCACCAACGTCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa Alignment from Spaln_aa2Genome GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTG ATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAG cttatttaggatgacctgaacatcctagggcatgtggatttctgtttcagGAAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGatgctcctcagccaagtgagaatcccccatccccaccaacgtcaccagCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa Alignment from Spaln_nt2Genome GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGAT --GCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAG cttatttaggatgacctgaacatcctagggcatgtggatttctgtttcagGAAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGATgctcctcagccaagtgagaatcccccatccccaccaacgtcaccagCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa Alignment from Pairagon GAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggatgacctgaacatcctagggcatgtggatttctgtttcagGAAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGATGCTCCTCAGCCAAGTGAGAATCCCCCATCCCCACCAACGTCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa Alignment from Exonerate_protein2genome GAAGGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggatgacctgaacatcctagggcatgtggatttctgttTCAGGAAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGATGCTCCTCAGCCAAGTGAGAATCCCCCATCCCCACCAACGTCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa Alignment from Exonerate_coding2genome GAAGGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggatgacctgaacatcctagggcatgtggatttctgttTCAGGAAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGATGCTCCTCAGCCAAGTGAGAATCCCCCATCCCCACCAACGTCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa Alignment from GeneWise GCTGAGGAAGGAAATCAGGAGTTCACTTCCAAGATGGAAAACTCATCAGATTCAGCATCGACTTCACCTGATGCTCCTCAGCCCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGACCAGTGAGAATCCACCATCACCACCGACTTCACCTGCCGTTCCTCAGACCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCACCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCCGACTTCACCTGCCGCTCCTCAGCCCAGGGAGAATCCACCATCACCCCATTCGAATAGTTCAGGAAAACAA cttatttaggatgacctgaacatcctagggcatgtggattTCTGTTTCAGGAAAACAAGAGTTTACTTCCAAGATGGACAATTCATCAGATTCAGCATCAGCTTCACCTGATGCTCCTCAGCCAAGTGAGAATCCCCCATCCCCACCAACGTCACCAGCTGCTCCTCAGACCAGTGAAAATCCAACATCACCACCTACTTCTCCTGCAATTCCTCAGACAAGGGAGAATCCACCATCACCACCAACGTCACCTGCAGCTCCTCAACCCAGGGAGAACCCTCCTTCACCACCAATCTCACCTGCTGCTTCTCAGCCAAGGGAGAACCCACCATCACCTCCAACCTCACATGCTGCTCCTCAGCCCAGGGAGAATCCACCATCACCTCATTCGAATAGTTCTGGTAAACAGgtaagaatacctgatttgttccagagtattctgaggaagccaggatctaa #### Sfxn2_ID9964_2 --> 1 - 2 Original Alignment gATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACag gccccttggagtaagggttgggtcagctattttttttcctttgcaaataggATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACaggtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg Alignment from CESAR gATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACag gccccttggagtaagggttgggtcagctattttttttcctttgcaaataggATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACaggtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg Alignment from Spaln_aa2Genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG gccccttggagtaagggttgggtcagctattttttttcctttgcaaatagGATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACAGgtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg Alignment from Spaln_nt2Genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG gccccttggagtaagggttgggtcagctattttttttcctttgcaaatagGATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACAGgtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg Alignment from Pairagon GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG gccccttggagtaagggttgggtcagctattttttttcctttgcaaatagGATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACAGgtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg Alignment from Exonerate_protein2genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG gccccttggagtaagggttgggtcagctattttttttcctttgcaaatagGATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACAGgtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg Alignment from Exonerate_coding2genome GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG gccccttggagtaagggttgggtcagctattttttttcctttgcaaatagGATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACAGgtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg Alignment from GeneWise GATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCGAAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCTTCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAG gccccttggagtaagggttgggtcagctattttttttcctttgcaaatagGATGGGCCTTGTACCCCCTGGTACCCAGATGGAGCAGCTGCTGTATGCAAAAAAGCTTTTTGACTCAGCATTCCACCCAGACATGGGGGAGAAAATGAATGTCATTGGACGTATGACCTTTCAGGTTCCTGGTGGCATGCTGATTACAGGCTTCATGCTCCAGTTCTACAGgtatcctacagcgcttgaagtaattaaatgggcctacattccgataagtg #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCaggtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCaggtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Pairagon GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc #### Sgms1_ID6687_2 --> 1 - 0 Original Alignment gTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacaggTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg Alignment from CESAR gTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacaggTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg Alignment from Spaln_aa2Genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacagGTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg Alignment from Spaln_nt2Genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacagGTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg Alignment from Pairagon GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacagGTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg Alignment from Exonerate_protein2genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacagGTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg Alignment from Exonerate_coding2genome GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacagGTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg Alignment from GeneWise GTCTATTATTAGCAGAAGATTTTTCTGCATAGTTGGCACGCTGTACCTGTATCGGTGTATTACAATGTATGTAACTACACTCCCAGTACCTGGCATGCATTTCAACTGTTCTCCGAAG gaaagttgcagtggggtccctcaattagctgtgttgtgtcgatgccacagGTCTATTACTAGCCGCAGGTTTTTCTGCATAGTTGGCACATTGCACCTGTATCAGTGCATAACAATG---GTAACTACACTCCCAGTACCCGGCATGCATTTCAACTGTTCCTCAAAGgtgagttgctctaccaagtgatgtcgtatatttacagccttgctcagggg #### Sh3pxd2a_ID10167_14 --> 0 - 0 Original Alignment GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata Alignment from CESAR GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata Alignment from Spaln_aa2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata Alignment from Spaln_nt2Genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata Alignment from Pairagon GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata Alignment from Exonerate_protein2genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata Alignment from Exonerate_coding2genome GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata Alignment from GeneWise GGGTTCCAGCTGCCAAAGCCGCCAGAGCCCCCTTCTGTTGAGGTAGAATACTACACCATTGCTGAATTCCAGTCCTGCATTTCTGACGGGATCAGCTTTCGAGGCGGACAGAAGGCAGAG catcataaagcctagagccagggaaatagctgtcttgttcacccccgcagGGGTTCCAGCTGCCGAAGCCACCAGAGCCCCCCTCTGTTGAAGTAGAGTACTACACCATTGCTGAGTTCCAGTCCTGCATTTCAGATGGGATCAGCCTGCGAGGTGGACAAAAGGCAGAGgtgaggctctctagaatttaatcagcactctccactttgactagactata #### Sh3pxd2a_ID10204_3 --> 0 - 1 Original Alignment ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAg aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAggttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat Alignment from CESAR ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAg aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAggttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat Alignment from Spaln_aa2Genome ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAG aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAGgttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat Alignment from Spaln_nt2Genome ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAG aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAGgttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat Alignment from Pairagon ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAG aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAGgttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat Alignment from Exonerate_protein2genome ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAG aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAGgttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat Alignment from Exonerate_coding2genome ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAG aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAGgttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat Alignment from GeneWise ATGCAGCTTCTGGATAAGTTTCCTATTGAAGGTGGCCAGAAGGATCCGAAGCAAAGGATTATTCCCTTTCTTCCAG aatggcttgactggtgtccatctatctgagctcttaccctctgtccacagATGCAGCTTCTGGATAAGTTTCCTATTGGAGGTGGCCAGAAGGATCCAAAGCAAAGGATTATTCCCTTTCTTCCAGgttaagtcctgtggcagcatgaaaccttagaggagaggattctcccagat #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment g gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggtgagtgtgccagttggatattagccatttctgttgctgccttgtgtagggCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTgagtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from CESAR g gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTga ggtaagtgtgccagttggatattagccatttctgttgctgccttgtgtagggCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTgagtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Spaln_aa2Genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtgagtgtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Spaln_nt2Genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtgagtgtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Pairagon G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtgagtgtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Exonerate_protein2genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtgagtgtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Exonerate_coding2genome G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtgagtgtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from GeneWise G GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtgagtgtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc #### Sipa1_ID1143_9 --> 1 - 2 Original Alignment gAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAag atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcaggAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCaggtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc Alignment from CESAR gAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAag atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcaggAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCaggtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc Alignment from Spaln_aa2Genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc Alignment from Spaln_nt2Genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc Alignment from Pairagon GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc Alignment from Exonerate_protein2genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc Alignment from Exonerate_coding2genome GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc Alignment from GeneWise GAGCTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAACCCAGCCGGCGGGGGGGTCCAGAGCCAGTACAGGATGAAACTGGGAAGTTGGTCATATTGCCTCCCACCAAGCAGCTGCTACATTTTTGCCTGAAAGACAGCAGCAGTCCTCCGGGGCCTGGGGATCTGACTGAGGAGAGGACAGAGTTCCTGCGCAGCCACAACTCCCTGTCATCTGGAAG atatcgcatcatttaatgcctatccacctctgtctttccctcctcctcagGAGTTTTTCGGAGCTCTATATGCTCTCTCTGAAGGAGCCCAGCCGACGAGGGGGTCCAGAGCCTGTACAGGATCAAACTGGAAAGCTGGTCATACTGCCTCCCACCAAACAGCTATTGCATTTTTGTTTAAAAGACAGCAGCAGCCCCCTGGGGCCTGGGGACCTGACTGAGGAGAGGACAGAGTTCCTGCGTAGCCACAACTCCCTCTCATCTGGCAGgtgagttactagaggtggccttagggtctttaaccaagggaaatgctacc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACaggtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACaggtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat #### Sipa1_ID1148_4 --> 0 - 1 Original Alignment CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAa gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGtgtgagttctatgaagctgactaatgtgtagggataggccattttgagact Alignment from CESAR CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAa gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGtgtgagttctatgaagctgactaatgtgtagggataggccattttgagact Alignment from Spaln_aa2Genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGTgtgagttctatgaagctgactaatgtgtagggataggccattttgagact Alignment from Spaln_nt2Genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGTgtgagttctatgaagctgactaatgtgtagggataggccattttgagact Alignment from Pairagon CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGTgtgagttctatgaagctgactaatgtgtagggataggccattttgagact Alignment from Exonerate_protein2genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGTgtgagttctatgaagctgactaatgtgtagggataggccattttgagact Alignment from Exonerate_coding2genome CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGTgtgagttctatgaagctgactaatgtgtagggataggccattttgagact Alignment from GeneWise CTGAGCTTCCAACGCAAGGTGGGCATCCTGTACTGCCGCGCAGGCCAGGGCTCTGAGGAAGAGATGTACAACAACCAGGAGGCCGGAGCAGCCTTTATGCAGTTCCTTACCTTGCTGGGTGATGTGGTGCGACTCAAAGGCTTTGAAAGTTACCGGGCCCAGCTGGATACCAAAA gctcttcccatgctttagggcagctaggttattttctttttcttgtctagCTGAGCTACCAACGTAAAGTGGGCATCCTATACTGTCGTGCAGATCAAGGTTCCGAGGAAGAGATGTATAACAACCAGGAGGCGAGAGCAGCCTTTATGCGACTGATCACCTCACTAGGTGATGTAGTGCGCCTCAAGGGGTTTGAGAGTTACCGGGCCCAATTAGAGACCAAGTgtgagttctatgaagctgactaatgtgtagggataggccattttgagact #### Slc15a3_ID3027_2 --> 0 - 2 Original Alignment GTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGT---GCCATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTG---GGCCTGGCATTCTTC---ATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCag ttgaagtaggctagtcccctgagtcctctttaattactctttttttaaagGTGATGGATCTTGGGGATGATGCCACCCACCGTTTCTTTAACTGGGTCTACTGGAGCAACAACCTAGCTGCCGCCATCCTGTCTCTGTTG---GTGGCTTTTATTGAGCAGAACATTGGCTTTATATGTGATTATAGCATCATTGTTGGCCTTGTGGGCCGCCTAGCATTCTTCTTCATTTTTCTT---GCCACACCAGTCTTCATCACCAAGCCCCCAACAGGTAGCCAAGTTTCATCTATGCTGAAGCTTGCATTCCAGAATTGTTGTCTCTGCCGAATATCCTACTCTcggtaagtatgggctgtggtctcttgcgcttcaatgaggattgccagtatat Alignment from CESAR GTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGT---GCCATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTGGGC---CTGGCATTC---TTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCag ttgaagtaggctagtcccctgagtcctctttaattactctttttttaaagGTGATGGATCTTGGGGATGATGCCACCCACCGTTTCTTTAACTGGGTCTACTGGAGCAACAACCTAGCTGCCGCCATCCTGTCTCTGTTG---GTGGCTTTTATTGAGCAGAACATTGGCTTTATATGTGATTATAGCATCATTGTTGGCCTTGTGGGCCGCCTAGCATTCTTCTTCATTTTTCTT---GCCACACCAGTCTTCATCACCAAGCCCCCAACAGGTAGCCAAGTTTCATCTATGCTGAAGCTTGCATTCCAGAATTGTTGTCTCTGCCGAATATCCTACTCTcggtaagtatgggctgtggtctcttgcgcttcaatgaggattgccagtatat Alignment from Spaln_aa2Genome GTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGTGCCATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTGGGC---CTGGCATTCTTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCAG ttgaagtaggctagtcccctgagtcctctttaattactctttttttaaagGTGATGGATCTTGGGGATGATGCCACCCACCGTTTCTTTAACTGGGTCTACTGGAGCAACAACCTAGCTGCCGCCATCCTGTCTCTGTTGGTGGCTTTTATTGAGCAGAACATTGGCTTTATATGTGATTATAGCATCATTGTTGGCCTTGTGGGCCGCCTAGCATTCTTCTTCATTTTTCTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGTAGCCAAGTTTCATCTATGCTGAAGCTTGCATTCCAGAATTGTTGTCTCTGCCGAATATCCTACTCTCGgtaagtatgggctgtggtctcttgcgcttcaatgaggattgccagtatat Alignment from Spaln_nt2Genome GTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGTGCC---ATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTGGGCC---TGGCATTCTTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCAG ttgaagtaggctagtcccctgagtcctctttaattactctttttttaaagGTGATGGATCTTGGGGATGATGCCACCCACCGTTTCTTTAACTGGGTCTACTGGAGCAACAACCTAGCTGCCGCCATCCTGTCTCTGT---TGGTGGCTTTTATTGAGCAGAACATTGGCTTTATATGTGATTATAGCATCATTGTTGGCCTTGTGGGCCGCCTAGCATTCTTCTTCATTTTTCTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGTAGCCAAGTTTCATCTATGCTGAAGCTTGCATTCCAGAATTGTTGTCTCTGCCGAATATCCTACTCTCGgtaagtatgggctgtggtctcttgcgcttcaatgaggattgccagtatat Alignment from Pairagon GTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGT---GCCATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTGG---GCCTGGCATTCTTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCAG ttgaagtaggctagtcccctgagtcctctttaattactctttttttaaagGTGATGGATCTTGGGGATGATGCCACCCACCGTTTCTTTAACTGGGTCTACTGGAGCAACAACCTAGCTGCCGCCATCCTGTCTCTGT---TGGTGGCTTTTATTGAGCAGAACATTGGCTTTATATGTGATTATAGCATCATTGTTGGCCTTGTGGGCCGCCTAGCATTCTTCTTCATTTTTCTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGTAGCCAAGTTTCATCTATGCTGAAGCTTGCATTCCAGAATTGTTGTCTCTGCCGAATATCCTACTCTCGgtaagtatgggctgtggtctcttgcgcttcaatgaggattgccagtatat Alignment from Exonerate_protein2genome GTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGTGCCATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTGGGC---CTGGCATTCTTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCAG ttgaagtaggctagtcccctgagtcctctttaattactctttttttaaagGTGATGGATCTTGGGGATGATGCCACCCACCGTTTCTTTAACTGGGTCTACTGGAGCAACAACCTAGCTGCCGCCATCCTGTCTCTGTTGGTGGCTTTTATTGAGCAGAACATTGGCTTTATATGTGATTATAGCATCATTGTTGGCCTTGTGGGCCGCCTAGCATTCTTCTTCATTTTTCTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGTAGCCAAGTTTCATCTATGCTGAAGCTTGCATTCCAGAATTGTTGTCTCTGCCGAATATCCTACTCTCGgtaagtatgggctgtggtctcttgcgcttcaatgaggattgccagtatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGATGGATCTCGGGCGCGATGCCACCCGCCGCTTCTTCAACTGGTTCTATTGGAGCATCAACCTGGGTGCCATATTGTCCCTGTTGGTGGTGGCTTTCATCGAGCAGAACATCAGCTTCCTATGGGGCTACAGCATCATCGTGGGCCTCGTGGGC---CTGGCATTCTTCATTTTTCTCTTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGCAGCCAAGTGTCATCTATGCTGAAGCTTGCGTTCCAAAACTGCTGTCCCTGCCGGAGGTCCTCTTCCAG ttgaagtaggctagtcccctgagtcctctttaattactctttttttaaagGTGATGGATCTTGGGGATGATGCCACCCACCGTTTCTTTAACTGGGTCTACTGGAGCAACAACCTAGCTGCCGCCATCCTGTCTCTGTTGGTGGCTTTTATTGAGCAGAACATTGGCTTTATATGTGATTATAGCATCATTGTTGGCCTTGTGGGCCGCCTAGCATTCTTCTTCATTTTTCTTGCCACACCAGTCTTCATCACCAAGCCCCCAACAGGTAGCCAAGTTTCATCTATGCTGAAGCTTGCATTCCAGAATTGTTGTCTCTGCCGAATATCCTACTCTCGgtaagtatgggctgtggtctcttgcgcttcaatgaggattgccagtatat #### Slc15a3_ID3030_5 --> 0 - 1 Original Alignment ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg atgatgtgggcttcctcctgtgcagcttcattttctttattatctttcagGTCCCGGAAGCATGGCTTCTATCGGCCAATGTAGTAGCTGTGATCCTGATACTTATTCCCGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGTAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATCGTTGCAggtaagagatataatttgtgcatccaacatgtgtcagggcttcccaactta Alignment from CESAR ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAg atgatgtgggcttcctcctgtgcagcttcattttctttattatctttcagGTCCCGGAAGCATGGCTTCTATCGGCCAATGTAGTAGCTGTGATCCTGATACTTATTCCCGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGTAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATCGTTGCAggtaagagatataatttgtgcatccaacatgtgtcagggcttcccaactta Alignment from Spaln_aa2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG atgatgtgggcttcctcctgtgcagcttcattttctttattatctttcagGTCCCGGAAGCATGGCTTCTATCGGCCAATGTAGTAGCTGTGATCCTGATACTTATTCCCGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGTAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATCGTTGCAGgtaagagatataatttgtgcatccaacatgtgtcagggcttcccaactta Alignment from Spaln_nt2Genome ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTTG---CGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG atgatgtgggcttcctcctgtgcagcttcattttctttattatctttcagGTCCCGGAAGCATGGCTTCTATCGGCCAATGTAGTAGCTGTGATCCTGATACTTATTCCCGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGTAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATCGTTGCAGgtaagagatataatttgtgcatccaacatgtgtcagggcttcccaactta Alignment from Pairagon ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGA---TCCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG atgatgtgggcttcctcctgtgcagcttcattttctttattatctttcagGTCCCGGAAGCATGGCTTCTATCGGCCAATGTAGTAGCTGTGATCCTGATACTTATTCCCGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGTAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATCGTTGCAGgtaagagatataatttgtgcatccaacatgtgtcagggcttcccaactta Alignment from Exonerate_protein2genome ATCCCAGAAGCCTGGCTCCTACTGGCCAAT---GTTGCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG atgatgtgggcttcctcctgtgcagcttcattttctttattatctttcagGTCCCGGAAGCATGGCTTCTATCGGCCAATGTAGTAGCTGTGATCCTGATACTTATTCCCGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGTAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATCGTTGCAGgtaagagatataatttgtgcatccaacatgtgtcagggcttcccaactta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCCCAGAAGCCTGGCTCCTACTGGCCAATGTT---GCGGTGATCCTGATTCTGATCCCTGTCAAGGATCACTTGATTGAT---CCTCTGCTGCTGCGGTGCAAGCTGCTGCCCTCATCTCTGCAGAAAATGGCCCTGGGCATGTTCTTTGGGTTCACCTCCATCATTGTGGCAG atgatgtgggcttcctcctgtgcagcttcattttctttattatctttcagGTCCCGGAAGCATGGCTTCTATCGGCCAATGTAGTAGCTGTGATCCTGATACTTATTCCCGTGAAGGAACACCTGATAGATACTCCTCTGGTGCTGAGGTGTAAACTATTGCCTTCATCTCTACAGAAAGCAGCCCTAGGCATGTTTTTTGGTTTCGTCTCCATCATCGTTGCAGgtaagagatataatttgtgcatccaacatgtgtcagggcttcccaactta #### Slc16a12_ID6973_5 --> 1 - 1 Original Alignment gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg agaggcacttgctttgcaaaggggggaggccaccctcatgtgctgcctaggTGTCTGAAAAATTACCGATATGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACGTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTCTATTTCCTTCATGCGGTACCTTACTTAGTGAGTCCACCCATTGCAggtcagacatgagtatctactacctgtggttgagatctggaaagtacacta Alignment from CESAR gTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAg agaggcacttgctttgcaaaggggggaggccaccctcatgtgctgcctaggTGTCTGAAAAATTACCGATATGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACGTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTCTATTTCCTTCATGCGGTACCTTACTTAGTGAGTCCACCCATTGCAggtcagacatgagtatctactacctgtggttgagatctggaaagtacacta Alignment from Spaln_aa2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgctttgcaaaggggggaggccaccctcatgtgctgcctagGTGTCTGAAAAATTACCGATATGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACGTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTCTATTTCCTTCATGCGGTACCTTACTTAGTGAGTCCACCCATTGCAGgtcagacatgagtatctactacctgtggttgagatctggaaagtacacta Alignment from Spaln_nt2Genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgctttgcaaaggggggaggccaccctcatgtgctgcctagGTGTCTGAAAAATTACCGATATGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACGTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTCTATTTCCTTCATGCGGTACCTTACTTAGTGAGTCCACCCATTGCAGgtcagacatgagtatctactacctgtggttgagatctggaaagtacacta Alignment from Pairagon GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgctttgcaaaggggggaggccaccctcatgtgctgcctagGTGTCTGAAAAATTACCGATATGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACGTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTCTATTTCCTTCATGCGGTACCTTACTTAGTGAGTCCACCCATTGCAGgtcagacatgagtatctactacctgtggttgagatctggaaagtacacta Alignment from Exonerate_protein2genome GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgctttgcaaaggggggaggccaccctcatgtgctgcctagGTGTCTGAAAAATTACCGATATGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACGTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTCTATTTCCTTCATGCGGTACCTTACTTAGTGAGTCCACCCATTGCAGgtcagacatgagtatctactacctgtggttgagatctggaaagtacacta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCTGAAGAATTACCGATATGTTTGCTACCTCTTTGCCGTGGCACTAGATGGGCTGTGCTATCTGTGTCTTCCAATGCTTCAAACCTTCCCCCTTCTTGTGCCTTTCTCTTGTACCTTTGGCTACTTTGATGGAGCCTACGTTACCTTGATCCCGGTCGTGACTGCAGAGATAGTAGGGACCACCTCTTTGTCTTCAGCACTTGGCGTGGTCTACTTCCTTCATGCAGTGCCATACTTGGTGAGCCCACCCATTGCAG agaggcacttgctttgcaaaggggggaggccaccctcatgtgctgcctagGTGTCTGAAAAATTACCGATATGTTTGCTACTTTCTTGCTGTAGCACTAGATGGATTATGCTGTTTGTGTCTTCCTATGCTTCAATCCTTCCTCCTTCTTGTGCCATTCTCTTGTACTTTTGGTTACGTTGATGGAGCTTATGTAACTTTGATCCCAGTTGTGACTGCAGAAATAGTAGGGACTACCTCTTTGTCATCAGCACTTGGAGTAGTCTATTTCCTTCATGCGGTACCTTACTTAGTGAGTCCACCCATTGCAGgtcagacatgagtatctactacctgtggttgagatctggaaagtacacta #### Slc18a2_ID12931_2 --> 2 - 2 Original Alignment ttCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACag attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagtgCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACaagtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg Alignment from CESAR ttCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACag attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagtgCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACaagtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg Alignment from Spaln_aa2Genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAAC---TCAGTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg Alignment from Spaln_nt2Genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACT---CAGTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg Alignment from Pairagon TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACT---CAGTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg Alignment from Exonerate_protein2genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg Alignment from Exonerate_coding2genome TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg Alignment from GeneWise TTCCCATCATTCCCAGCTACCTGTACAGCATTAAGCACGAGAAAAATACTACGGAAATCCAGACTGCCAGGCCAGCGCTCACAGCCTCCACTTCCGAAAGCTTCCACAGCATCTTCTCTTACTATAACAACTCTACTGTGTTCACGGGGAATGCCACGGGGGGCCTCCCAGGAGGGGAGTCACCCAAGGCTACCACCACACAGCACACTGTGACCAACACGACTGTCCCTCCCGACTGCCCCAGTGAAGACAAAGACCTTCTAAATGAGAATGTGCAAGTTGGGCTGCTGTTTGCCTCCAAAGCCACTGTCCAGCTCCTCACCAACCCATTCATAGGACTTCTAACCAACAG attgctctgggggactctgtttagtgtttctttcatttcctgctccaaagTGCCCATTATTCCCAGTTACCTGTACAGCATTAAGCATGAGGAAAACACTATGGAAAACCAGATTGCTAGGCCAGCACTCACAGCCTCCACTTCTGAAAGCTTCCACAGCATTTGCTCATACTACAACAACTCA---GTGTTCACAGGAAATGCCACTGGAGGCCTTCCGGGGGGGGAGTCATCTAAGGCAACCACTACACACCACAGTGTGACCAACACAACTGTCCCTCCGGATTGCGCAAGTGAAGACAAAGATCTTCTTAATGAGAAGGTACAAGTTGGGTTGCTGTTTGCCTCCAAAGCCACTGTTCAGCTCCTTACTAACCCATTCCTAGGGATTCTCAGCAACAAgtgagttgatggtgatggatgtcttggaaccctgttagctctagtttcgg #### Slc18a2_ID12937_5 --> 2 - 1 Original Alignment ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagggATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGggtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg Alignment from CESAR ggATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAg ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagggATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGggtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg Alignment from Spaln_aa2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagGGATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGGgtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg Alignment from Spaln_nt2Genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagGGATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGGgtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg Alignment from Pairagon GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagGGATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGGgtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg Alignment from Exonerate_protein2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagGGATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGGgtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg Alignment from Exonerate_coding2genome GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagGGATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGGgtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg Alignment from GeneWise GGATGGGCATGCTGGCCAGCGTGTACACAGATGATGAAGAGAGGGGTAACGCCATGGGGATTGCTCTGGGGGGCCTGGCCATGGGGGTCTTAG ttagtactcccttgatcatagatgatttgtttctgttttcttacttccagGGATGGGGATGTTAGCAAGTGTGTACACAGATGATGAGGAGAGGGATAATGCAATGGGCATTGCTCTTGTGGGTTTGGCCATGGGGGTTTTGGgtcagtgtgggaaaattgtggtgactgcattggggggcctgggtgtcagg #### Slc1a1_ID6165_4 --> 2 - 2 Original Alignment gtATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCag ccgcttgttttagactttagccctctggttgtcttttcaattctttttaggtATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCaggtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca Alignment from CESAR gtATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCag ccgcttgttttagactttagccctctggttgtcttttcaattctttttaggtATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCaggtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca Alignment from Spaln_aa2Genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ccgcttgttttagactttagccctctggttgtcttttcaattctttttagGTATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCAGgtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca Alignment from Spaln_nt2Genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ccgcttgttttagactttagccctctggttgtcttttcaattctttttagGTATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCAGgtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca Alignment from Pairagon GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ccgcttgttttagactttagccctctggttgtcttttcaattctttttagGTATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCAGgtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca Alignment from Exonerate_protein2genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ccgcttgttttagactttagccctctggttgtcttttcaattctttttagGTATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCAGgtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca Alignment from Exonerate_coding2genome GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ccgcttgttttagactttagccctctggttgtcttttcaattctttttagGTATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCAGgtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca Alignment from GeneWise GTATTGTGTTAGTTGTGAGTATCAAGCCTGGTGTCACTCAGAAAGTGAATGACATCAACAGGACGGGTAAAACCCCTGAAGTCAGCACCATGGATGCCATGTTGGACCTGATCAG ccgcttgttttagactttagccctctggttgtcttttcaattctttttagGTATTGTATTGGTTGTGAGTGCAAAGCCTGGTGTCACTGAGAAAGTGAATGACATCAACAGAACGGGTAAAACCCCTGAAGTCAGCAGCATGGATGCCATGTTGGACCTGATCAGgtaccgtcttgctcatgtgtgactttagcacactccacatgtttttgcca #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggagaggagtttacctaggctatcttacagattagttcttttcaatagtTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATggtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggagaggagtttacctaggctatcttacagattagttcttttcaatagtTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATggtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGA---------CCTTGGGAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGA---------CCTTGGGAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGG---TCCCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGAC---------CTTGGGAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggagaggagtttacctaggctatcttacagattagttcttttcaatagTTTTTCCGTTGGCTTTACCTTTTATGGATTAGCCATTGACCTT---------GGGAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTTCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGCTTGGGCCAACACCTATGTCAGGTCAGTTTTCTGGTC---CCTGGACTATGTATACTTTCCAATATATTGGTGCCCCATGgtgagtcaatctcttgctgggggtgagtgttcaacagaaaactagtagtg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCATTATCTCTATGCTGTGCctgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCATTATCTCTATGCTGTGCctgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctctctcc Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggctgtgtgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctctctcc Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctctctcc Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctctctcc Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctctctcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggtctctctcc #### Slc22a12_ID1795_2 --> 0 - 2 Original Alignment TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATag tgcagggtagattggagaacaacttttcttgagtacatcttgtgttgcagTGGGATCTAGTACATAACTCCCAGGCCCTGAGGCCAATGGCCCAGTCCATCGTGCTGGCTGGAATTTTGGTAGGTGCTGCAGTTTGTGGCCATGCTGCAGATcggtaagactcagagccaaaactgccaggcccaatggaaccggttgatgtag Alignment from CESAR TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATag tgcagggtagattggagaacaacttttcttgagtacatcttgtgttgcagTGGGATCTAGTACATAACTCCCAGGCCCTGAGGCCAATGGCCCAGTCCATCGTGCTGGCTGGAATTTTGGTAGGTGCTGCAGTTTGTGGCCATGCTGCAGATcggtaagactcagagccaaaactgccaggcccaatggaaccggttgatgtag Alignment from Spaln_aa2Genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggagaacaacttttcttgagtacatcttgtgttgcagTGGGATCTAGTACATAACTCCCAGGCCCTGAGGCCAATGGCCCAGTCCATCGTGCTGGCTGGAATTTTGGTAGGTGCTGCAGTTTGTGGCCATGCTGCAGATCGgtaagactcagagccaaaactgccaggcccaatggaaccggttgatgtag Alignment from Spaln_nt2Genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggagaacaacttttcttgagtacatcttgtgttgcagTGGGATCTAGTACATAACTCCCAGGCCCTGAGGCCAATGGCCCAGTCCATCGTGCTGGCTGGAATTTTGGTAGGTGCTGCAGTTTGTGGCCATGCTGCAGATCGgtaagactcagagccaaaactgccaggcccaatggaaccggttgatgtag Alignment from Pairagon TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggagaacaacttttcttgagtacatcttgtgttgcagTGGGATCTAGTACATAACTCCCAGGCCCTGAGGCCAATGGCCCAGTCCATCGTGCTGGCTGGAATTTTGGTAGGTGCTGCAGTTTGTGGCCATGCTGCAGATCGgtaagactcagagccaaaactgccaggcccaatggaaccggttgatgtag Alignment from Exonerate_protein2genome TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggagaacaacttttcttgagtacatcttgtgttgcagTGGGATCTAGTACATAACTCCCAGGCCCTGAGGCCAATGGCCCAGTCCATCGTGCTGGCTGGAATTTTGGTAGGTGCTGCAGTTTGTGGCCATGCTGCAGATCGgtaagactcagagccaaaactgccaggcccaatggaaccggttgatgtag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGGGACCTGGTATGTAACTCCCAGGCCCTGAGACCCATGGCCCAGTCCATCTTCCTGGCTGGAATCCTGGTAGGAGCCGCAGTGTGTGGCCATGCCTCAGATAG tgcagggtagattggagaacaacttttcttgagtacatcttgtgttgcagTGGGATCTAGTACATAACTCCCAGGCCCTGAGGCCAATGGCCCAGTCCATCGTGCTGGCTGGAATTTTGGTAGGTGCTGCAGTTTGTGGCCATGCTGCAGATCGgtaagactcagagccaaaactgccaggcccaatggaaccggttgatgtag #### Slc22a19_ID2210_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCa cctaaccaagttcctgactacagagcctaatgcctctggtccttttccaggTTTGGG------CTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCagtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg Alignment from CESAR gTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCa cctaaccaagttcctgactacagagcctaatgcctctggtccttttccaggTTTGGG------CTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCagtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg Alignment from Spaln_aa2Genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA cctaaccaagttcctgactacagagcctaatgcctctggtccttttccagGTTTGGG------CTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCAgtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg Alignment from Spaln_nt2Genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA cctaaccaagttcctgactacagagcctaatgcctctggtccttttccagGTTTGG------GCTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCAgtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg Alignment from Pairagon GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA cctaaccaagttcctgactacagagcctaatgcctctggtccttttccagGTTTGG------GCTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCAgtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg Alignment from Exonerate_protein2genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA cctaaccaagttcctgactacagagcctaatgcctctggtccttttccagGTTTGGG------CTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCAgtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg Alignment from Exonerate_coding2genome GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA cctaaccaagttcctgactacagagcctaatgcctctggtccttttccagGTTTGGG------CTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCAgtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg Alignment from GeneWise GTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGAAACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCCTCAACCCTGAGGACAAACAGTGCTTTGCTCA cctaaccaagttcctgactacagagcctaatgcctctggtccttttccagGTTTGGG------CTTATTTTCACTTGCTCATTACTGAGAATGGCAATTACTGGAAATTGTGTAGCCTTTGCCCCCTCCTTTCTCATTTACTGCTCTCTCAGATTTCTGTCAGGCATTTTTTTATCAACCCTGAGAACAAATAGTGCTCTACTCAgtgaggtaaagaagggcttttttactgggtggagggcatttacttttacg #### Slc22a19_ID2211_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACaagtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca Alignment from CESAR TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACaa tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACaagtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca Alignment from Pairagon TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca Alignment from GeneWise TGGGACCTGGTGTGTGGATCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTGGCCACTTATCAGACAA tccattttgttattaaatctgatatatgtcagttgttcctggttctgcagTGGTATCTGGTGTGTGGATCCCAGCCACTTAACTCAGTGGCTAAATTCATATATATGACCGGCATTTTTATAGGATATATCATGAGTGGCCACCTATTGGACAAgtgagtacctgtatcttacaattgctctacagtttcttaatttctcacca #### Slc22a20_ID1347_6 --> 0 - 2 Original Alignment GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCtg aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCtggtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct Alignment from CESAR GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCtg aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCtggtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct Alignment from Spaln_aa2Genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCTGgtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct Alignment from Spaln_nt2Genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCTGgtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct Alignment from Pairagon GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCTGgtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct Alignment from Exonerate_protein2genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCTGgtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct Alignment from Exonerate_coding2genome GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCTGgtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct Alignment from GeneWise GTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTCCATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTG aatcagagcatcctgttccatgtgaatattctcaattctcttggttctagGTCCTTAGCTCTTTTATCCAGGACAAATTTGCAAGTGTCTGCACAACTAATTCTATCTTGGACCTTTTCAGAACTCCTGCCATCAGGAGGGTAATGTGCTGCCTCATGGGGGTCTGgtgagtgattgcttatcccttcagtgagagaagaccagatacttcatgct #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACaggtgaggtgcttggatggcaacatctattccctcactctttattgtcattt Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACaggtgaggtgcttggatggcaacatctattccctcactctttattgtcattt Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgaggtgcttggatggcaacatctattccctcactctttattgtcattt Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgaggtgcttggatggcaacatctattccctcactctttattgtcattt Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgaggtgcttggatggcaacatctattccctcactctttattgtcattt Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgaggtgcttggatggcaacatctattccctcactctttattgtcattt Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgaggtgcttggatggcaacatctattccctcactctttattgtcattt Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtagtaaccgcacaatcaaagcccatcttattctgctttttctccagTGGGACCTGGTTTGTGAAACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTCGGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtgaggtgcttggatggcaacatctattccctcactctttattgtcattt #### Slc22a26_ID2218_7 --> 1 - 1 Original Alignment aTTTCTACAAATATCACCTACTGTAGGG---ATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATC------TTCCTTCTGAGCATAGTGTCTGTGCCTCAAg agaaatatggatatcggacctataatgtatttggccatttggtttcttagaTTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAggtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa Alignment from CESAR aTTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTT------CTGAGCATAGTGTCTGTGCCTCAAg agaaatatggatatcggacctataatgtatttggccatttggtttcttagaTTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAggtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa Alignment from Spaln_aa2Genome ATTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTC------CTTCTGAGCATAGTGTCTGTGCCTCAAG agaaatatggatatcggacctataatgtatttggccatttggtttcttagATTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAGgtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa Alignment from Spaln_nt2Genome ATTTCTACAAATATCACCTACTGT---AGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCT------GAGCATAGTGTCTGTGCCTCAAG agaaatatggatatcggacctataatgtatttggccatttggtttcttagATTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAGgtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa Alignment from Pairagon ATTTCTACAAATATCACCTACTGT---AGGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCT------TCCTTCTGAGCATAGTGTCTGTGCCTCAAG agaaatatggatatcggacctataatgtatttggccatttggtttcttagATTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAGgtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa Alignment from Exonerate_protein2genome ATTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTC------CTTCTGAGCATAGTGTCTGTGCCTCAAG agaaatatggatatcggacctataatgtatttggccatttggtttcttagATTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAGgtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa Alignment from Exonerate_coding2genome ATTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTC------CTTCTGAGCATAGTGTCTGTGCCTCAAG agaaatatggatatcggacctataatgtatttggccatttggtttcttagATTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAGgtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa Alignment from GeneWise -TTTCTACAAATATCACCTACTGTA---GGGATCAACATGAACCTCCAACACTTGAAAGGCAATGTCTTCCTAACCCAAAGTCTTACTTCTGCATTCTCAATCCCAGCCACTGCTCTTGGAGGGTTTTTACTGAATTACATTGGCCGTAGAATAAGTCAACTCTTGCCCTGTTTGCTGTTTGGAATCTTCCTTCTG------AGCATAGTGTCTGTGCCTCAAG agaaatatggatatcggacctataatgtatttggccatttggtttcttagATTCCTACAAATTTCTCCTACTTTGAGAGGGCTTAACATGAACTTCCGACATTTGAGAGGCAATGTATTCCTAACCCAGAGTCTAACTTCTGCATTCTCACTGCCAGCCACAGCTCTGGGAGGGTTCTTACCCAACTACATTGGTCGTAGAATAAGTCAACTCTTACCCTGCCTATTATTTGGAATTTTCCTTCTCCTTCTGGGAATAGTGTATGTGCCCCAAGgtaaggagtgaccttttaccttgagacaggtagacatgttgtcttacaaa #### Slc22a26_ID2222_3 --> 1 - 1 Original Alignment gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagaTTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGagtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc Alignment from CESAR gTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCa tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagaTTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGagtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc Alignment from Spaln_aa2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGAgtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc Alignment from Spaln_nt2Genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagATTTG---GCAAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGAgtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc Alignment from Pairagon GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagATTTG---GCAAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGAgtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc Alignment from Exonerate_protein2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGAgtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc Alignment from Exonerate_coding2genome GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGAgtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc Alignment from GeneWise GTTTGGGAGGAAGTTACTTTTCAGATGTGCTTTGTTGCAAATGGCCATCACTGGGACCTGTACAGCCTTGGCTCCCACCTTCTTCATCTACTGCTTACTTCGCTTCCTGACAGGGCTTTGTATCATACCCATAAACACAAATAGTGTTTTGCTCA tattttaaacaggtgacctatttccctgctcctgccccgttctcttccagATTTGGC---AAATTACTCTTCAGGTGTGCCTTGTTGCAAATGGCCATCACTGGGACATGTACAGTCTTAGAACCGTCCTTCTTTATCTACTGCTTACTACGTTTTCTGACAGGGATTTGCATTATACCCATAAATATAAACAGCGTCTTGTTGAgtaagtcaaaacttccacagttcaaaactcccacagttcttgcaattttc #### Slc22a27_ID2231_7 --> 1 - 1 Original Alignment aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagaCTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGagtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt Alignment from CESAR aCTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAg ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagaCTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGagtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt Alignment from Spaln_aa2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagACTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGAgtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt Alignment from Spaln_nt2Genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagACTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGAgtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt Alignment from Pairagon ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagACTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGAgtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt Alignment from Exonerate_protein2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagACTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGAgtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt Alignment from Exonerate_coding2genome ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagACTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGAgtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt Alignment from GeneWise ACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTGATTGCTGTATTTGTACCTCAAG ataatggaactgagtctgagtacgtagaccctgcctgttctggttcacagACTTTTATTTACAGTATCAATTTTTGGTCTTGCAGTCCACCTCCAATACCTAAGTTCTAATATCATACTGTTGCAGTTTCTCACTAGTGCATTGGCAATACTAGTTGGTGTTATCGGATCTTTTGTAGTCAACCACATTGGCCGTCGAGTAACCTACCTAGTTCTTACCTCCTTGAGGGGTATCTACATTCTCATTGCTGTATTTGTACCACAGAgtgaggaaagagttacagcataaaaaagggttgctgatttttaggatggt #### Slc22a28_ID2247_4 --> 2 - 2 Original Alignment ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagtaTTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTG---GTTCTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAaggtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct Alignment from CESAR ttTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAag ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagtaTTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAaggtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct Alignment from Spaln_aa2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagTATTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAAGgtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct Alignment from Spaln_nt2Genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagTATTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTGG---TTCTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAAGgtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct Alignment from Pairagon TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagTATTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTGG---TTCTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAAGgtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct Alignment from Exonerate_protein2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagTATTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAAGgtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct Alignment from Exonerate_coding2genome TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagTATTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAAGgtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct Alignment from GeneWise TTTTAGAATGGACAAACCCTAAATTCCTAGGCATGGTGGCAGTGCTTACATCTTGTGCTGCTAGTATTGGATACATGATATTGGCAGGCCTGGCTTTTCTATTTAGAATCTGGCATCACCTCCAGCTAGCAATGTCTGTGCCAATATTCTTCTTCTTTATACTCACAAG ctgatttctcctgtcaaagcccatccaggactttgcccctctctctgcagTATTAGAATGGACAAACCCAAAATTCCTTGGCATGGTGGCAGTTCTTACATCTTGTGCTGCTAGTGTGGGGTACATGATATTGGCAAGCCTGGTT---CTGTTTAAAATTTGGCATCATCTCCAGCTTGCAATGCCTGTGCCAATCTACTTCTTCTTTATTTTGACAAGgtgagttgaacaggttccaaaatgtggaaggtgccatctctttaatctct #### Slc22a29_ID2256_7 --> 1 - 1 Original Alignment aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata Alignment from CESAR aCTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAg ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagaCTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAggtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata Alignment from Spaln_aa2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata Alignment from Spaln_nt2Genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata Alignment from Pairagon ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata Alignment from Exonerate_protein2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata Alignment from Exonerate_coding2genome ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata Alignment from GeneWise ACTTTTCTTTACAGTATCAATTATTGGCCTGGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAG ctgcttgtatggttcaaaatgctgggttgtaagggacatgttctctacagACTTTTCTTTACAGTATCAATTATTGGCCTAGCAGTTCACCTCCAGCACCTGAGTTCTAATATTATCCTGTTGCAGTTTCTTATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTTTGTACTTAATCATATTGGCCGTAGAGTAACCTATCTGGTCCTCATGTCCCTGAGGGGAATCTTCATTATGATTGCTGTATTTGTACCTCAAGgtgagcaaagcatgtggataaagaaaaagaattaaaatgatggcgcaata #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from Exonerate_coding2genome attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaaggtgcgcttacaaacccaaagcacatatcggggcattgttgactgtgttgctaagacatatcgtcatcagtcagtgaggcccacccttgctataacactattgttgcccttaagagtgtctga Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgtaggagcactaccggcacttctccctgtttgtgtttcaagGTGCGCTTACAAACCCAAAGCACATATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATCAGTCAgtgaggcccacccttgctataacactattgttgcccttaagagtgtctga #### Slc29a2_ID790_4 --> 1 - 1 Original Alignment cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagcATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATtgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc Alignment from CESAR cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagcATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATtgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc Alignment from Spaln_aa2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagCATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATTgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc Alignment from Spaln_nt2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagCATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATTgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc Alignment from Pairagon CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagCATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATTgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc Alignment from Exonerate_protein2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagCATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATTgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc Alignment from Exonerate_coding2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagCATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATTgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc Alignment from GeneWise CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ctgatatgtgctcattatcttcctgtccctcatcgttggcccactcatagCATCCCTGAATCAGTGCAGGTTCTAGGTAGTTTGCTTCCCATATTACTACTGTTTGCCCTGACAGCTGCATTGGTGAAGGAGGACTTGAGCCCTGGGCCATTTTTCTCCGTTACCATGGCATCTGTCTGGTTCATCAATTgttggtcacagatcctggctccatccatcatgcagcaacaccaagcagcc #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagccTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCagtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagccTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCagtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagCCTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagCCTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagCCTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagCCTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa Alignment from Exonerate_coding2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagCCTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcagtaataaactatattgcaccatacattctcttcctcattccgtgcagCCTTCTGTGCCGTTCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGTACCCTTTTTCTCAGTGGCCATGGCCTGGCTGGGATCTTTGCTGCCCTTGCTATGCTCAAATCTTTGGCCAgtaagcatatatggttacctaaagagttgcaaaatgagctaataaagtaa #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgggcactggtgatagttcacagcatggaacaggggagccagcctgctt Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgggcactggtgatagttcacagcatggaacaggggagccagacttaag Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagcctgctt Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagcctgctt Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagcctgctt Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagcctgctt Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagcctgctt Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagcctgctt #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGGAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG gtaacaagaccagttatttttttgttaacgctcacccactctcttcccagCCTGTGAAGGCCCCACTGATGCCTTGGAATGAATCAAGCATCTTTTACATCCCAAGACCTGTAAGTCTTAACATGACGGTGAAGgtaagtagatgcaggttgctccttaaagtagtcaagttagctaaagaggg #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg #### Slc3a2_ID2305_4 --> 2 - 0 Original Alignment gcATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccaggcATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGCA---------CCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga Alignment from CESAR gcATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccaggcATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGCA---------CCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga Alignment from Spaln_aa2Genome GCATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccagGCATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGCA---------CCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga Alignment from Spaln_nt2Genome GCATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccagGCATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGC---------ACCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga Alignment from Pairagon GCATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccagGCATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGCA---------CCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga Alignment from Exonerate_protein2genome GCATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccagGCATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGCA---------CCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga Alignment from Exonerate_coding2genome GCATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccagGCATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGCA---------CCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga Alignment from GeneWise GCATTCACATCATTTTGGACCTCACTCCCAACTACCAGGGCCAGAATGCGTGGTTCCTCCCTGCTCAGGCTGACATTGTAGCCACCAAAATGAAG tcatatcctcttttgtgctggggaagttactgtggccttcttacttccagGCATCCACATCATTTTGGACTTCACTCACAACTACCAGGGCCAGAATGCA---------CCTGCTCAGGCTTACATTGTGGCCACAAAAATGAAAgtaagtttctataaaggagggccggtgagctgatctactaatgcaagtga #### Slc3a2_ID2307_2 --> 2 - 1 Original Alignment gcACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTg agagagctgtctcattcattcagagatgatgatattctctggcccatcaggcACAAAGAGCCAGGAGACTCAAGTGGACATGAAAGATGTAAAGCTGAATGAGCTAGAACCGCAGAAGCAGCCTATGAATGCAGCAGACAGTGCAGCGGCTGGCGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCTAAAGAGGAGCTTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGCTGGGCACTG---------------------------TGTATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTggtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg Alignment from CESAR gcACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTg agagagctgtctcattcattcagagatgatgatattctctggcccatcaggcACAAAGAGCCAGGAGACTCAAGTGGACATGAAAGATGTAAAGCTGAATGAGCTAGAACCGCAGAAGCAGCCTATGAATGCAGCAGACAGTGCAGCGGCTGGCGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCTAAAGAGGAGCTTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGCTGGGCA---------------------------CTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTggtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg Alignment from Spaln_aa2Genome GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agagagctgtctcattcattcagagatgatgatattctctggcccatcagGCACAAAGAGCCAGGAGACTCAAGTGGACATGAAAGATGTAAAGCTGAATGAGCTAGAACCGCAGAAGCAGCCTATGAATGCAGCAGACAGTGCAGCGGCTGGCGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCTAAAGAGGAGCTTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGCTGGGCA---------------------------CTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg Alignment from Spaln_nt2Genome GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agagagctgtctcattcattcagagatgatgatattctctggcccatcagGCACAAAGAGCCAGGAGACTCAAGTGGACATGAAAGATGTAAAGCTGAATGAGCTAGAACCGCAGAAGCAGCCTATGAATGCAGCAGACAGTGCAGCGGCTGGCGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCTAAAGAGGAGCTTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGCTGGGC---------------------------ACTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg Alignment from Pairagon GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agagagctgtctcattcattcagagatgatgatattctctggcccatcagGCACAAAGAGCCAGGAGACTCAAGTGGACATGAAAGATGTAAAGCTGAATGAGCTAGAACCGCAGAAGCAGCCTATGAATGCAGCAGACAGTGCAGCGGCTGGCGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCTAAAGAGGAGCTTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGCTGGGCACTGT---------------------------GTATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg Alignment from Exonerate_protein2genome CTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agagagctgtctcattcattcagagatgatgatattctctggcccatcaggcacaaagagccaggagactcaagtggacatgaaagatgtaaagctgaatgagctagaaccgcagaagcagcctatgaatgcagcagacagtgcagcggctggcgagaagaatggtctggtaacgattaaaattgctgaagatgagacagaggctagtgttaagtttactggcctatctaaagaggagcttttgaaagtagctggcagcccaggctgggtatgcacctgctgggcaCTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg Alignment from Exonerate_coding2genome CTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agagagctgtctcattcattcagagatgatgatattctctggcccatcaggcacaaagagccaggagactcaagtggacatgaaagatgtaaagctgaatgagctagaaccgcagaagcagcctatgaatgcagcagacagtgcagcggctggcgagaagaatggtctggtaacgattaaaattgctgaagatgagacagaggctagtgttaagtttactggcctatctaaagaggagcttttgaaagtagctggcagcccaggctgggtatgcacctgctgggcaCTGTGTATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg Alignment from GeneWise GCACCATGAGCCAGGACACCGAAGTGGACATGAAAGATGTGGAGCTGAACGAGCTAGAACCGGAGAAGCAGCCCATGAATGCAGCGGACGGGGCGGCGGCCGGGGAGAAGAACGGTCTGGTGAAGATCAAGGTGGCGGAGGACGAGACGGAGGCCGGGGTCAAGTTCACCGGCTTATCCAAGGAGGAGCTACTGAAGGTAGCGGGCAGCCCTGGCTGGGTGCGCACCCGCTGGGCGCTGCTGCTGCTCTTCTGGCTCGGTTGGCTGGGCATGCTGGCGGGCGCCGTGGTTATCATCGTTCGGGCGCCGCGCTGCCGTGAGCTGCCTGTACAGAGGTGGTGGCACAAGGGCGCCCTCTACCGCATCGGCGACCTTCAGGCCTTTGTAGGCCGGGATGCGGGAGGCATAGCTG agagagctgtctcattcattcagagatgatgatattctctggcccatcagGCACAAAGAGCCAGGAGACTCAAGTGGACATGAAAGATGTAAAGCTGAATGAGCTAGAACCGCAGAAGCAGCCTATGAATGCAGCAGACAGTGCAGCGGCTGGCGAGAAGAATGGTCTGGTAACGATTAAAATTGCTGAAGATGAGACAGAGGCTAGTGTTAAGTTTACTGGCCTATCTAAAGAGGAGCTTTTGAAAGTAGCTGGCAGCCCAGGCTGGGTATGCACCTGCTGGGCACTGTGT---------------------------ATGCTTGCCGGCACTGTGGTAATCATAGTTCGGGTTCCACGATGTTGTGACCTGCCTGTTCAGAAGTGGTGGCACAGGAGCGTTCTCTACAGTATCAGTGATCTACAAGCATTTGTGGGGCGGGATGTGGGTGGCATAGCTGgtaagttcatgatgcagcatcttcctttatgcccatgagtccatacctcg #### Slit1_ID8208_30 --> 2 - 2 Original Alignment gaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcaggaCGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCaggtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc Alignment from CESAR gaAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCag cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcaggaCGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCaggtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc Alignment from Spaln_aa2Genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcagGACGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCAGgtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc Alignment from Spaln_nt2Genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcagGACGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCAGgtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc Alignment from Pairagon GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcagGACGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCAGgtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc Alignment from Exonerate_protein2genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcagGACGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCAGgtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc Alignment from Exonerate_coding2genome GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcagGACGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCAGgtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc Alignment from GeneWise GAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCAATGTGTTGGCACCCCGGATGGGCCCAG cccaaatgggaacaatatctggtttgctgttgatctttctctcctttcagGACGGGCCTGTGAACAGCTGGTTGACTTCTGCTCCCCAGACATGAACCCATGTCAACATGAGGCTCAATGTGTTGGCACCCCAGATGGACCCAGgtaagagttgctgccagtgatggtcatttgtctggttgcttccattcatc #### Slit1_ID8215_24 --> 1 - 2 Original Alignment gATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGct agagatggtcattgggccctgtatataagatgatctttttctttccccaggATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTACACCTGctgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat Alignment from CESAR gATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGct agagatggtcattgggccctgtatataagatgatctttttctttccccaggATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTACACCTGctgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat Alignment from Spaln_aa2Genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT agagatggtcattgggccctgtatataagatgatctttttctttccccagGATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTACACCTGCTgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat Alignment from Spaln_nt2Genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT agagatggtcattgggccctgtatataagatgatctttttctttccccagGATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCT---CTTTCAAGGGCTACGTTCACTACACCTGCTgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat Alignment from Pairagon GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT agagatggtcattgggccctgtatataagatgatctttttctttccccagGATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCT---CTTTCAAGGGCTACGTTCACTACACCTGCTgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat Alignment from Exonerate_protein2genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT agagatggtcattgggccctgtatataagatgatctttttctttccccagGATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTACACCTGCTgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat Alignment from Exonerate_coding2genome GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT agagatggtcattgggccctgtatataagatgatctttttctttccccagGATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTACACCTGCTgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat Alignment from GeneWise GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT agagatggtcattgggccctgtatataagatgatctttttctttccccagGATCCTCAGCCACAATGCCCTACAGTGCATCCCTCCTCTC---TTTCAAGGGCTACGTTCACTACACCTGCTgtatgcgtacctctgctctttccgtttggaggttaattatggtaagtgat #### Slit1_ID8216_23 --> 1 - 2 Original Alignment gGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGct ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtaggGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACActgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg Alignment from CESAR gGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGct ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtaggGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACActgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg Alignment from Spaln_aa2Genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtagGGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACACTgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg Alignment from Spaln_nt2Genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtagGGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACACTgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg Alignment from Pairagon GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtagGGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACACTgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg Alignment from Exonerate_protein2genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtagGGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACACTgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg Alignment from Exonerate_coding2genome GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtagGGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACACTgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg Alignment from GeneWise GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT ctgaagtagtttctttgcatacaaataattattttcttctgtctgtgtagGGACTTGAGCAACAACAAGATTAGTTCCTTGACTAATTCTTCCTTCACCAACATGAGCCAGCTGACCACACTgtgagcccttgtcagccaggcaatgtgggcacaaattcgatcccaggctg #### Slit1_ID8220_19 --> 1 - 2 Original Alignment gATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACAct gtgcagtgtttttatggagtgccttttctgttattatttttatctcacaggATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTctgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg Alignment from CESAR gATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACAct gtgcagtgtttttatggagtgccttttctgttattatttttatctcacaggATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTctgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg Alignment from Spaln_aa2Genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT gtgcagtgtttttatggagtgccttttctgttattatttttatctcacagGATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTCTgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg Alignment from Spaln_nt2Genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT gtgcagtgtttttatggagtgccttttctgttattatttttatctcacagGATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTCTgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg Alignment from Pairagon GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT gtgcagtgtttttatggagtgccttttctgttattatttttatctcacagGATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTCTgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg Alignment from Exonerate_protein2genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT gtgcagtgtttttatggagtgccttttctgttattatttttatctcacagGATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTCTgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg Alignment from Exonerate_coding2genome GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT gtgcagtgtttttatggagtgccttttctgttattatttttatctcacagGATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTCTgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg Alignment from GeneWise GATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGTGCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCCCTGTCCACACT gtgcagtgtttttatggagtgccttttctgttattatttttatctcacagGATGTTGAGGAACAATCGCATCAGCTGTATCCACAATGACAGCTTCACTGGGCTGCGCAATGTGTGGCTCCTGTCACTCTATGAGATCTACATAACCACCATCTCCCCCGGAACCTTTGACACTCTCCAGGCCCTGTCCACTCTgtatgtcccagcacacaaggaattgatgacatcatcatattctggtagtg #### Slit1_ID8221_18 --> 1 - 2 Original Alignment CACATCTGAAGAAAat aAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCct CACATCTGGAGAAAatgtgagcaactgtctgataccccaatgctccccagaAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACActgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca Alignment from CESAR CACATCTGAAGAAAat aAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCct CACATCTGGAGAAAatgtaagtaactgtctgataccccaatgctccccagaAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACActgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca Alignment from Spaln_aa2Genome CACATCTGAAGAAAAT AAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCCT CACATCTGGAGAAAATgtgagcaactgtctgataccccaatgctccccagAAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACACTgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca Alignment from Spaln_nt2Genome CACATCTGAAGAAAAT AAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCCT CACATCTGGAGAAAATgtgagcaactgtctgataccccaatgctccccagAAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACACTgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca Alignment from Pairagon CACATCTGAAGAAAAT AAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCCT CACATCTGGAGAAAATgtgagcaactgtctgataccccaatgctccccagAAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACACTgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca Alignment from Exonerate_protein2genome CACATCTGAAGAAAAT AAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCCT CACATCTGGAGAAAATgtgagcaactgtctgataccccaatgctccccagAAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACACTgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca Alignment from Exonerate_coding2genome CACATCTGAAGAAAAT AAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCCT CACATCTGGAGAAAATgtgagcaactgtctgataccccaatgctccccagAAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACACTgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca Alignment from GeneWise CACATCTGAAGAAAAT AAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGTGAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGCGGACCCT CACATCTGGAGAAAATgtgagcaactgtctgataccccaatgctccccagAAACCTCTGTAATAACAAAGTATCTGAAATTGAAGATGGCACATTTGAGGGGGCAACAACTGTCAGTGAGTTGCACATCACTGCTAACCAACTTGAGTCTATTAGGAGTGGCATGTTCCGGGGTCTAGATGGATTGCGGACACTgtgagtgggcaaaactgctgtagtgcagtctgagtaaaagtatgtgcgca #### Slit1_ID8225_14 --> 1 - 1 Original Alignment gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gacaggacacccagactgagtttgcaattcaccagctcctcttcccacaggCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtggagtgcattgcctatccctgagggatatggaatacataattaacata Alignment from CESAR gCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAg gacaggacacccagactgagtttgcaattcaccagctcctcttcccacaggCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAggtggagtgcattgcctatccctgagggatatggaatacataattaacata Alignment from Spaln_aa2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccagactgagtttgcaattcaccagctcctcttcccacagGCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtggagtgcattgcctatccctgagggatatggaatacataattaacata Alignment from Spaln_nt2Genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccagactgagtttgcaattcaccagctcctcttcccacagGCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtggagtgcattgcctatccctgagggatatggaatacataattaacata Alignment from Pairagon GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccagactgagtttgcaattcaccagctcctcttcccacagGCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtggagtgcattgcctatccctgagggatatggaatacataattaacata Alignment from Exonerate_protein2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccagactgagtttgcaattcaccagctcctcttcccacagGCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtggagtgcattgcctatccctgagggatatggaatacataattaacata Alignment from Exonerate_coding2genome GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGCCAAAGAGCAGTACTTCATTCCAGGGACAGAGGACTACCACCTGAACAG gacaggacacccagactgagtttgcaattcaccagctcctcttcccacagGCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGGTGGAGTGCATTGCCTATCCCTGAGGGATATGGAATACATAATTAACATa Alignment from GeneWise GCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGACTTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGCGTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAG gacaggacacccagactgagtttgcaattcaccagctcctcttcccacagGCATTTGGCACAGAATCCTTTTATCTGTGATAGTAACCTTAAGTGGCTGGCAGATTTCCTACACACAAACCCCATGAAGACAACTGGTGCTCGATGTGACAGCCCCTGGCGCCTCTCGAACAAGCGTATTGGGCAGATCAAAAGCAATAAATTTCGGTGCTCAGgtggagtgcattgcctatccctgagggatatggaatacataattaacata #### Slk_ID10263_15 --> 2 - 0 Original Alignment ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagctCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat Alignment from CESAR ctCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagctCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat Alignment from Spaln_aa2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat Alignment from Spaln_nt2Genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat Alignment from Pairagon CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat Alignment from Exonerate_protein2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat Alignment from Exonerate_coding2genome CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat Alignment from GeneWise CTCGAGAAGCCGCAATTTGGGAGCTTGAAGAGCGACATTTACAAGAGAAGCACCAGCTGCTTAAACAGCAGCTTAAAGATCAGTATTTCATGCAGAGACATCAGCTGCTAAAACGCCATGAGAAG ttggacatgagttaatacaaagagaaatatgtttaatgtttttccctcagCTCGAGAAGCTGCAATTTGGGAGCTTGAAGAGCGACATTTACAGGAAAAGCATCAGCTGCTTAAACAGCAGCTTAAAGATCAGTACTTCATGCAGAGACATCAGCTGTTAAAACGCTATGAGAAGgtgagtgtaagggatttctccactttggacacctctagactttattttat #### Smarca2_ID5724_8 --> 0 - 0 Original Alignment GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg Alignment from CESAR GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg Alignment from Spaln_aa2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg Alignment from Spaln_nt2Genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg Alignment from Pairagon GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg Alignment from Exonerate_protein2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg Alignment from Exonerate_coding2genome GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg Alignment from GeneWise GCCGAAGATGAAGAGGGCTACAGGAAGCTTATTGACCAAAAGAAAGACAGACGTCTCGCCTACCTATTGCAGCAGACCGATGAGTATGTCGCCAATCTGACCAACCTGGTGTGGGAGCACAAGCAGGCCCAAGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG atgccggtatatgtttagtagcatactgggcactttgctcatttcaacagGCTGAAGATGAAGAGGGGTACAGGAAGCTAATTGACCAAAAGAAAGACAGACGTCTCGCATACCTCTTGCAACAGACTGATGAGTATGTTGCCAATCTCACAAACCTGGTGTGGGAGCACAAACAAGCCCAAGCAGCCAAAGAGAAGAAGAAAAGGAGGAGGAGGAAGAAGgtaagattcaaaggagaacctgtatctatgttccacagactttatgtttg #### Smarca2_ID5727_9 --> 0 - 0 Original Alignment AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga Alignment from CESAR AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga Alignment from Spaln_aa2Genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga Alignment from Spaln_nt2Genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga Alignment from Pairagon AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga Alignment from Exonerate_protein2genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga Alignment from Exonerate_coding2genome AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga Alignment from GeneWise AAGGCTGAAGAGAATGCAGAGGGAGGGGAACCTGCCCTGGGACCAGATGGAGAG acccatggagtctcagtggtcttggtgtctccaccccctctgctctccagAAGGCTGAGGAGAATGCAAAAGGGGGGAAACCTGTGCTAGGATCAGATGGTGAAgtaaaaccatgctggtcattctgttacacctaaactaacttgactttaga #### Smarca2_ID5728_10 --> 0 - 2 Original Alignment CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAgggtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt Alignment from CESAR CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTgg ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAgggtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt Alignment from Spaln_aa2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt Alignment from Spaln_nt2Genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt Alignment from Pairagon CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt Alignment from Exonerate_protein2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt Alignment from Exonerate_coding2genome CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt Alignment from GeneWise CCAATAGATGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACACACACAGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGATGCCTGGCTGGAGATGAATCCTGG ttgaatattgctccctccttcactttcattcttatttctgctttgctcagCCCATAGCCAAGAGCAGCCAGACAAGTGACCTACCCGTCAAAGTGACACACACAGGAAATGGAAAAGTACTCTTTGGACCAGAAGCACCCAAAGCAAGTAAGCTGGACACTTGGGTGGAAATGAATCCAGGgtggactgatgaaattttgttgttggacttgtcacaggtcaggccagagt #### Smarca2_ID5729_11 --> 1 - 0 Original Alignment tTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagtTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg Alignment from CESAR tTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagtTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg Alignment from Spaln_aa2Genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagTTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg Alignment from Spaln_nt2Genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagTTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg Alignment from Pairagon TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagTTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg Alignment from Exonerate_protein2genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagTTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg Alignment from Exonerate_coding2genome TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagTTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg Alignment from GeneWise TTACGAAGTTGCACCCAGATCTGACAGTGAAGAGAGTGAATCGGACTACGAGGAGGAG aggttaccccccatcttttgtcccctcgactattgtttattatactgtagTTTCCGAGTTGCACCCAGATCAGATAGTGAAGAGAGTGAATCAGACTACGAGGAGGAGgtaagaagtactgttttcaaggggtaaatgaagcaaaagtcaagagctgg #### Smarca2_ID5742_19 --> 0 - 0 Original Alignment GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt Alignment from CESAR GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt Alignment from Spaln_aa2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt Alignment from Spaln_nt2Genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt Alignment from Pairagon GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt Alignment from Exonerate_protein2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt Alignment from Exonerate_coding2genome GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt Alignment from GeneWise GTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGTCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAG taaaatggtaacaaatcagtccttctatatgttttgaattgtgcaagcagGTTGAGTATGTGATCAAGTGTGACATGTCAGCTCTGCAGAAGATTCTGTACCGCCACATGCAAGCCAAGGGGATCCTCCTCACGGACGGGTCTGAGAAAGATAAGAAGgtgagttttggatgtacaataacttcaaattagtttactctaagcattgt #### Smarca2_ID5743_20 --> 0 - 0 Original Alignment GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg Alignment from CESAR GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg Alignment from Spaln_aa2Genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg Alignment from Spaln_nt2Genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg Alignment from Pairagon GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg Alignment from Exonerate_protein2genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg Alignment from Exonerate_coding2genome GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg Alignment from GeneWise GGGAAAGGAGGTGCCAAGACACTTATGAACACCATCATGCAGCTGAGAAAAATATGCAACCACCCATATATGTTTCAGCACATTGAG agggaataggaaatacttaacaatgagttatttaattttgattccattagGGGAAGGGAGGAACCAAAACACTTATGAACACCATTACACAGCTCAGAAAAATCTGCAACCACCCATATATGTTCCAACACATTGAAgtaagactgctgcgagtactctgcttcagcatattaccaaatatcaggcg #### Smarca2_ID5744_21 --> 0 - 2 Original Alignment GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATgg aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATgggtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt Alignment from CESAR GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATgg aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATgggtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt Alignment from Spaln_aa2Genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATGGgtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt Alignment from Spaln_nt2Genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATGGgtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt Alignment from Pairagon GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATGGgtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt Alignment from Exonerate_protein2genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATGGgtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt Alignment from Exonerate_coding2genome GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATGGgtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt Alignment from GeneWise GAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGG aatatcttgatgttatacttgattcttatacacctcagtgtctcttgcagGAGTCCTTTGCTGAACATCTGGGGTACTCTAATGGTGTCATTAATGGgtgagtctactttttccttatcccagatatgggtaattaaaatggtcatt #### Smarca2_ID5745_22 --> 1 - 1 Original Alignment gGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACg tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcaggGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATggtaagcatctgaaactctttactcaaactacattcccatgagaggataca Alignment from CESAR gGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACg tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcaggGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATggtaagcatctgaaactctttactcaaactacattcccatgagaggataca Alignment from Spaln_aa2Genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcagGGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATGgtaagcatctgaaactctttactcaaactacattcccatgagaggataca Alignment from Spaln_nt2Genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcagGGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATGgtaagcatctgaaactctttactcaaactacattcccatgagaggataca Alignment from Pairagon GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcagGGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATGgtaagcatctgaaactctttactcaaactacattcccatgagaggataca Alignment from Exonerate_protein2genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcagGGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATGgtaagcatctgaaactctttactcaaactacattcccatgagaggataca Alignment from Exonerate_coding2genome GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcagGGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATGgtaagcatctgaaactctttactcaaactacattcccatgagaggataca Alignment from GeneWise GGCTGAGCTGTATCGGGCCTCGGGAAAGTTTGAGCTGCTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATTATGGAGGATTACTTTGCTTTTCGGAACTTCCTGTACCTGCGCCTTGACG tcactactgtaggcaatgctggctcttcaagtctgactgttggttttcagGGCTGAGCTGTATCGGGCGCCAGGAACGTTTGAGCTGCTTGATTGTATTTTACCCCAATTAAGGGCAACTAATCATCGTGTGTTACTCTTTTGCCAGATGACCTCACTGATGACTATCATGGAAGATTACTTTGCTTTTCAAAATTTTCTATATCTTCGGCTTGATGgtaagcatctgaaactctttactcaaactacattcccatgagaggataca #### Smarca2_ID5746_23 --> 2 - 0 Original Alignment gcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcaggcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat Alignment from CESAR gcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcaggcACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat Alignment from Spaln_aa2Genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat Alignment from Spaln_nt2Genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat Alignment from Pairagon GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat Alignment from Exonerate_protein2genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat Alignment from Exonerate_coding2genome GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat Alignment from GeneWise GCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACAAGAGCAGGGGGCCTGGGCTTAAATCTTCAGGCGGCAGACACGGTGGTCATATTTGACAGCGACTGGAATCCTCACCAG ctccagatgaaataaattaacaagattcattatctggtaatctctttcagGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTAAATAAATTCAATGAACCTGGATCCCAATATTTCATTTTCTTGCTGAGCACAAGAACAGGGGGCCTGGGATTAAATCTTCAGGTGGCAGACACAGTGGTCATATTTGACAGCGACTGGAATCCTCACCAGgtaccctgccaggtctgctgccaagaaggagtggagactgccatgtacat #### Smarca2_ID5748_25 --> 0 - 0 Original Alignment GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta Alignment from CESAR GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta Alignment from Spaln_aa2Genome GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta Alignment from Spaln_nt2Genome GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta Alignment from Pairagon GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta Alignment from Exonerate_protein2genome GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta Alignment from Exonerate_coding2genome GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta Alignment from GeneWise GAAGAAGATGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATG acttcagagttttgcgtggatcattctgttcttaccttttgcctccacagGAAGAAGATGAGGTACCAGACGACGAGACCCTGAATCAGATGATTGCTCGCCGGGAGGAAGAATTTGATCTTTTTATGgtgaggctgtgcacttgggggaaaatcaaacctactttcccaagaattta #### Smarca2_ID5758_27 --> 0 - 2 Original Alignment GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt Alignment from CESAR GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACag tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACaggtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt Alignment from Spaln_aa2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt Alignment from Spaln_nt2Genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt Alignment from Pairagon GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt Alignment from Exonerate_protein2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt Alignment from Exonerate_coding2genome GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt Alignment from GeneWise GCCATCGAAGACGGCAATTTGGAAGAAATGGAAGAGGAGGTACGGCTTAAGAAGAGAAAAAGACGAAGAAATGTGGATAAAGACCCCGTGAAGGAAGATGTGGAAAAAGCGAAGAAAAGAAGAGGCCGCCCTCCGGCTGAGAAGTTGTCACCAAATCCCCCAAAACTAACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAAGACAG tctggcttactgacctccttgtttttttcgtggtgtttcttcttgcccagGCAATTGAAGATGGCAATTTGGAAGAAATGGAAGAAGAGGTACGGCTTAAGAAAAGGAAACGACGAAGAAATGTGGATAAAGACCCAGTGAAGGAAGATGTGGAAAAAGCAAAGGAAAGAAGAGGTCGCCCTCCGGCTGAGAAGTTATCACCAAATCCCCCAAAACTAACAAAGCAAATGAATGCCATCATTGATACTGTGATAAACTACAAAGACAGgtaagaccttgactccttctttgctaccaagtctagagcaaacctagctt #### Smarca2_ID5762_29 --> 0 - 0 Original Alignment GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt Alignment from CESAR GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt Alignment from Spaln_aa2Genome GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt Alignment from Spaln_nt2Genome GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt Alignment from Pairagon GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt Alignment from Exonerate_protein2genome GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt Alignment from Exonerate_coding2genome GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt Alignment from GeneWise GAGCGAATCCGTAATCATAAGTATCGGAGCCTGGGAGACCTGGAGAAAGACGTCATGCTTCTCTGTCACAACGCACAGACATTCAACTTGGAAGGATCCCAG gacataaaaacatggatctctactaatgcagttatttattcttatttcagGAGCGACTACGCAATCATAAATATCGAAGCCTAGGAGACCTGGGGAAAGATGTCATGCTCCTCTGTCATAATGCACAGACATTCAATCTGGAAGGATCTCAGgtaactgacaagaggacacagagagttaccttcacttccatccttgggtt #### Smc3_ID11314_2 --> 0 - 1 Original Alignment GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCg tgagttgtgctattactttttcttttttccccttctcttctcacctccagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTggtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac Alignment from CESAR GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCg tgagttgtgctattactttttcttttttccccttctcttctcacctccagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTggtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac Alignment from Spaln_aa2Genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tgagttgtgctattactttttcttttttccccttctcttctcacctccagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTGgtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac Alignment from Spaln_nt2Genome GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tgagttgtgctattactttttcttttttccccttctcttctcacctccagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTGgtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac Alignment from Pairagon GTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tgagttgtgctattactttttcttttttccccttctcttctcacctccagGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTGgtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac Alignment from Exonerate_protein2genome CAGGTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tgagttgtgctattactttttcttttttccccttctcttctcacctcCAGGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTGgtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac Alignment from Exonerate_coding2genome CAGGTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG tgagttgtgctattactttttcttttttccccttctcttctcacctcCAGGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTGgtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac Alignment from GeneWise TACATCAAGCAGGTGATCATCCAGGGCTTCCGAAGTTACCGAGACCAAACAATTGTAGATCCCTTCAGCTCCAAACATAATGTCATCG ctattactttttcttttttccccttctcttctcacctc---------CAGGTAATCATCCAGGGCTTCCAAAGTTACCAAGACCAAACAATTGTAGATCCCTTTAGCTCAAAACACAATGTCATTGgtgagtacatttatagtgtcgtatgtgcacttaatcctacattgttagac #### Smc3_ID11316_4 --> 2 - 0 Original Alignment caATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagccATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc Alignment from CESAR caATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagccATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc Alignment from Spaln_aa2Genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagCCATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc Alignment from Spaln_nt2Genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagCCATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc Alignment from Pairagon CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagCCATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc Alignment from Exonerate_protein2genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagCCATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc Alignment from Exonerate_coding2genome CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagCCATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc Alignment from GeneWise CAATCCAGTTTGTTCTCAGTGATGAATTCAGCCATCTTCGTCCAGAGCAGCGATTGGCTTTGTTGCAT gggccacaaaaattagagggaggctgatgatggctggctttctgttctagCCATCCAGTTTGTTCTTAGTGATGAATTCAGCCATCTTCATCCAGAGCAAGGATTGGCTCTGTTACGTgtgatggagtttcctcattagttgagatcttcacactctggaattgaacc #### Smc3_ID11322_10 --> 0 - 0 Original Alignment CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga Alignment from CESAR CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga Alignment from Spaln_aa2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga Alignment from Spaln_nt2Genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga Alignment from Pairagon CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga Alignment from Exonerate_protein2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga Alignment from Exonerate_coding2genome CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga Alignment from GeneWise CTTTCTGCTAAGCGAGAAACGAGTGGAGAGAAATCCAGACAACTAAGGGATGCCCAGCAGGATGCAAGAGACAAAATGGAG gtttttacccaatgtttaaagtggatagagctctgcttttgtcttctcagCTTTCAGCTAAGCAGGAAACAAGTGGAGAGAAATCAAGACAACTAAGGGATGCCCAGCAGGATACAAGAGATAAAATGGAGgtatgttcatacctaaagtcatacctagctcccaatattacttgtactga #### Smc3_ID11333_21 --> 0 - 0 Original Alignment CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCA---CAAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg Alignment from CESAR CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCA---CAAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg Alignment from Spaln_aa2Genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCA---CAAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg Alignment from Spaln_nt2Genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCAC---AAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg Alignment from Pairagon CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCAC---AAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg Alignment from Exonerate_protein2genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCA---CAAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg Alignment from Exonerate_coding2genome CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCA---CAAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg Alignment from GeneWise CAACGTAGCTTACAAAGCTTGGAGGCAAGTCTGCATGCTATGGAGTCCACCAGAGAGTCACTGAAAGCGGAGCTAGGAACGGATTTGCTTTCTCAACTCAGTCTGGAAGATCAGAAAAGAGTCGACGCTCTGAATGATGAAATCCGTCAGCTGCAGCAG tgttttttagcaacatacctaaatggcatgacctttgccttgccttgcagCAACGTAGCCTGCAAAGCTTGGAGGCAAGGCTGCATGCGATGGAGTCCCCCAGAGGTTCA---CAAGCAGAGCCAGGAACAGATCTGCTTTCTCAGCTTAGTCTAGAAGATCAAAAAAGGGTGGATGCTCTTAATGATGAGATC---CAATTGCAGCAGgtaaggctttttatgggtcctagttgtgtttatgtatgtctccatatctg #### Smc5_ID5119_14 --> 0 - 0 Original Alignment GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc Alignment from CESAR GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc Alignment from Spaln_aa2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc Alignment from Spaln_nt2Genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc Alignment from Pairagon GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc Alignment from Exonerate_protein2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc Alignment from Exonerate_coding2genome GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc Alignment from GeneWise GTAATACAAGAAACTCGATTAAAACAAATTTATACAGCAGAAGAAAAGTATGTGTTAAAAACTTCTGTGTATTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTTACTGTGGATCTAGAGCAAAGAAGACACTTGGAAGAGCAGCTAAAG atctgtaatgctttgaagcactatatcagttaacttgttttgtcatttagGTAATTCAAGAAACACGATTTAAACAAATTTATACAGCGGAAGAAAAGTATGTGTTAAAAACATCTGTGTACTCAAATAAAGTTATTTCTAGTAATACATCCCTGAAAGTAGCCCAGTTCCTCACTGTAACTGTGGATCTAGAACAACGGAGACACTTAGAAGAACAGCTGAACgtaagagaattagactgggttcctaaaatgattgagctgtgttttgaatc #### Smc5_ID5121_12 --> 0 - 2 Original Alignment GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAaa tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAaagtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac Alignment from CESAR GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAaa tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAaagtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac Alignment from Spaln_aa2Genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac Alignment from Spaln_nt2Genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac Alignment from Pairagon GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac Alignment from Exonerate_protein2genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac Alignment from Exonerate_coding2genome GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac Alignment from GeneWise GTTCGTGACAACAAGAAGTTAAGAGTAAATGCTGTTATTGCCCCCAAGATCTCATATGCAGACAAAGCCCCTTCAAGATCTCTGAATGACTTAAA tgaggccaacagatggtatatactacatagggatttgcttccttccttagGTTCGAGATAATGAAAAGCTAAGAGTTAATGCTGTCATTGCACCTAAGATTTCATATGCTGACAAAGCCCCAGCAAGCTCTCTAAATGACTTAAAgtatagtctagtttaagaactaagtgttgtttagtggctgggagctgcac #### Smc5_ID5122_11 --> 0 - 0 Original Alignment ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct Alignment from CESAR ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct Alignment from Spaln_aa2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct Alignment from Spaln_nt2Genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct Alignment from Pairagon ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct Alignment from Exonerate_protein2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct Alignment from Exonerate_coding2genome ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct Alignment from GeneWise ATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCAAATGACTTAAGAGCCTTTGTGTTTGAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAG agaaagtacctttcaaggaaagtatctaactaatcttctaattcctctagATTAATATGAAAGATAATAAAAATGCAAAATATGTTGAAAATCATATTTCATCGAATGACTTAAGAGCCTTTGTGTTTCAAAGTCAAGAAGATATGGAGATTTTCCTCAGAGAGgtgcagactaactatgttgataatcaattgatttgccaccttccccccct #### Smc5_ID5123_10 --> 2 - 0 Original Alignment gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctaggtGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat Alignment from CESAR gtGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctaggtGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat Alignment from Spaln_aa2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat Alignment from Spaln_nt2Genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat Alignment from Pairagon GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat Alignment from Exonerate_protein2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat Alignment from Exonerate_coding2genome GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat Alignment from GeneWise GTGTGAGTGATCATATTACACGGTTTGACAATCTTATGAATCAGAAGGAAGATAAGCTGAGACAGCGGTACCGGGATACGTATGATGCAGTCTTGTGGCTGAGAAATAACAGAGACAGGTTTAAACAAAGAGTCTGTGAACCCATAATGCTCACG atacttcactgtctaggacatgctgagtcattttcttatgatcaatctagGTGTGAGTGATCATATTACACGATTTGACAATCTAAAGAATCAGAAGGAAGATAAACTGAGACAGCGGTACCGGGATACATATGATGCAGTTTTGTGGCTGAGAAATAACAGAGACAGGTTCAAACAAAGAGTCTGTGAACCCATAATGCTCACAgtacataaccatgctcacagcatatgtactcaaccatatttctgtcctat #### Smc5_ID5130_4 --> 1 - 0 Original Alignment gTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtaggTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag Alignment from CESAR gTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtaggTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag Alignment from Spaln_aa2Genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtagGTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag Alignment from Spaln_nt2Genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtagGTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag Alignment from Pairagon GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtagGTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag Alignment from Exonerate_protein2genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtagGTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag Alignment from Exonerate_coding2genome GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtagGTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag Alignment from GeneWise GTTCAGGACTTCTGGAAATCTTATAATCACCCGCGAGATTGATGTGATAAAAAATCAGTCCTTTTGGTTCATCAACAAAAAGCCTGTAACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCTTAAACATCCAAGTGGGCAATCTGTGCCAGTTCTTGCCTCAG tcagcacaaccttttatgggcccaggagagagtggtttctattattgtagGTTCAGGACTTCTGGAAATCTTATGATCACCCGTGAGATTGATGGGATAAACAATCACTCATTTTGGTTCATCAACAAAAAGCCGGTTACCCAGAAGATAGTGGAAGAACAGGTTGCAGCCCTCAACATCCAGGTTGGTAATCTGTGCCAGTTCTTGCCTCAAgtgagagcctgatcagtgaacacagggcattaccttgctgtttcatgtag #### Smndc1_ID11280_2 --> 0 - 2 Original Alignment GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGAca cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGAcagtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga Alignment from CESAR GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGAca cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGAcagtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga Alignment from Spaln_aa2Genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGACAgtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga Alignment from Spaln_nt2Genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGACAgtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga Alignment from Pairagon GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGACAgtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga Alignment from Exonerate_protein2genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGACAgtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga Alignment from Exonerate_coding2genome GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGACAgtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga Alignment from GeneWise GAAGTAATAGAACTGACCAAAGACCTTCTGTCAACTCAGCCTTCGGAGACGCTCGCAAGCTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGGGACAAGTGCATGGCCGTGTGGAGTGAAGACGGACA cagtattacactgcaaatgccatgactttttgactccctctctcctgcagGAAGTGATAGAACTGACTAAAGACCTTCTGTCAACTCAATCTTCAGAGACACTTGCAAGTTCAGACAAGTTTGCTCCCACTCAACCCACTCATTCATGGAAGGTTGCTGACAAGTGTATGGCTGTATGGAGTGATGATGGACAgtaaggattggaattcactcgatgtagcatgataagcagatgtagcatga #### Snx15_ID1470_2 --> 0 - 0 Original Alignment TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagTTCATTTCAAAAAAAGACCCAGGAGATACTAAGGATgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta Alignment from CESAR TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagTTCATTTCAAAAAAAGACCCAGGAGATACTAAGGATgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta Alignment from Spaln_aa2Genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagTTCATTTCAAAAAAAGACCCAGGAGATACTAAGGATgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta Alignment from Spaln_nt2Genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagTTCATTTCAAAAAAAGACCCAGGAGATACTAAGGATgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta Alignment from Pairagon TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagTTCATTTCAAAAAAAGACCCAGGAGATACTAAGGATgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta Alignment from Exonerate_protein2genome TTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAG gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagTTCATTTCAAAAAAAGACCCAGGAGATACTAAGGATgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta Alignment from Exonerate_coding2genome gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagttcatttcaaaaaaagacccaggagatactaaggatgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta Alignment from GeneWise gtcagccacccttactctgtggtcactccatgttctcccctttcccgcagttcatttcaaaaaaagacccaggagatactaaggatgtaagtgtggcacaaatacatggcaaattacatccactgtggtacattta #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg #### Sorbs1_ID7896_23 --> 0 - 2 Original Alignment CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATtt tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATttgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta Alignment from CESAR CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATtt tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATttgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta Alignment from Spaln_aa2Genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta Alignment from Spaln_nt2Genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta Alignment from Pairagon CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta Alignment from Exonerate_protein2genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta Alignment from Exonerate_coding2genome CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta Alignment from GeneWise CAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTT tgataactgtagtgttattcatccccagtaatcttgtttttaaatgaaagCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTgtaagtattctgttcctagctgcaggcctgctttgaaaatcaacatatta #### Sorbs1_ID7901_21 --> 0 - 0 Original Alignment CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgcgagccacctgacgtcatcatgggactacttgactgactttgctgtagt Alignment from CESAR CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgcgagccacctgacgtcatcatgggactacttgactgactttgctgtagt Alignment from Spaln_aa2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgcgagccacctgacgtcatcatgggactacttgactgactttgctgtagt Alignment from Spaln_nt2Genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgcgagccacctgacgtcatcatgggactacttgactgactttgctgtagt Alignment from Pairagon CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgcgagccacctgacgtcatcatgggactacttgactgactttgctgtagt Alignment from Exonerate_protein2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgcgagccacctgacgtcatcatgggactacttgactgactttgctgtagt Alignment from Exonerate_coding2genome CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAG tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGgcgagccacctgacgtcatcatgggactacttgactgactttgctgtagt Alignment from GeneWise CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATC-- tcctccttctgctctggatgctttttctcaaattctctctcctactgcagCTTCTTCCTCCAGCAGAGAAGGCTCAGCCCAGAAAATTGGCACCTGTACAAGTTTTGGAATATGGAGAAGCCATTGCAAAGTTTAACTTTAACGGGGATACACAAGTGGAAATGTCTTTCCGAAAGGCGAGCCACCTGACgtcatcatgggactacttgactgactttgctgtagt #### Sorbs1_ID7933_3 --> 2 - 1 Original Alignment acATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAg ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagacATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAggtgagtcatcatacagcctgtccggatggagatcattagatgtgatggat Alignment from CESAR acATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAg ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagacATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAggtgagtcatcatacagcctgtccggatggagatcattagatgtgatggat Alignment from Spaln_aa2Genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagACATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAGgtgagtcatcatacagcctgtccggatggagatcattagatgtgatggat Alignment from Spaln_nt2Genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagACATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAGgtgagtcatcatacagcctgtccggatggagatcattagatgtgatggat Alignment from Pairagon ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagACATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAGgtgagtcatcatacagcctgtccggatggagatcattagatgtgatggat Alignment from Exonerate_protein2genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagACATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAGgtgagtcatcatacagcctgtccggatggagatcattagatgtgatggat Alignment from Exonerate_coding2genome ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAG ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagACATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAGgtgagtcatcatacagcctgtccggatggagatcattagatgtgatggat Alignment from GeneWise ACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGGC---------------------------------CTGGAG ctgtgttcacttcaagcttggacccaacatgtcttttctgcccctggtagACATGGACCCTACCAAAATCTGCACTGGGATTGGAACAGTGACTCTTCAGGCTTCATCTTCATACAGGGGAACCCCCAGCAGTAGCCCTGTGAGCCCTCAAGAGTCTCCTAAGCATGATAGGAAATCAGGTGAGTCATCATACAGCCTGTCCGGATGGAGATCATTAGATgtgatggat #### Sorcs3_ID10604_10 --> 0 - 0 Original Alignment GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg Alignment from CESAR GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg Alignment from Spaln_aa2Genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg Alignment from Spaln_nt2Genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg Alignment from Pairagon GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg Alignment from Exonerate_protein2genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg Alignment from Exonerate_coding2genome GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg Alignment from GeneWise GTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCACTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCACTGTTTACTG accccacacccaaggctaactgtttccttgtccattcctgggccttgcagGTGGCAGGTATTAAGGGGATATTTCTAGCCAACAAGAAGGTGGATGAGCAGGTGAAGACATATATTGCCTACAACAAGGGTAGGGATTGGCGGCTCCTACAAGCTCCA---------CTGAGGGGGGGTCCGGTGCATTGCATACTAgtacgctttgtaatgttgtcagattcagagaagcatgaagcttccctgcg #### Sorcs3_ID10608_12 --> 2 - 0 Original Alignment gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaaggtAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg Alignment from CESAR gtAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaaggtAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg Alignment from Spaln_aa2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg Alignment from Spaln_nt2Genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg Alignment from Pairagon GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg Alignment from Exonerate_protein2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg Alignment from Exonerate_coding2genome GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg Alignment from GeneWise GTAATATTGGCTCCGAACTCTCCTATACGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAG gatcaaaacccaacttccagatgacttttcatttttctttgtctttaaagGTAATATTGGCTCTGAACTCTCCTATACAGATATCAGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAAgttagcagaagattccaaagaaagctgtcggccctagtatgataggtagg #### Sorcs3_ID10621_15 --> 1 - 0 Original Alignment aGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagtGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact Alignment from CESAR aGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagtGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact Alignment from Spaln_aa2Genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact Alignment from Spaln_nt2Genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact Alignment from Pairagon AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact Alignment from Exonerate_protein2genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact Alignment from Exonerate_coding2genome AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact Alignment from GeneWise AGTTTTTGGCCACTTCAGCCTGCGCTCCGAATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACTTGGCACCTGCTCAATCAG acaatctccagttttagctgtttcatctttgtcaactttctttcctttagTGTTCTTGGCCACTTTAGCTTGCGATCAGAATGGCAGTTGGTGAAAGTAGACTACAAGTCTATCTTCAGCAGGCGATGCACGCGGGAGGACTTTAAGACTTGGCACCTGCTCAACCAGgtaagtcagtatacattgtataaaatactggtggctccagaagcatgact #### Sorcs3_ID10622_16 --> 0 - 2 Original Alignment GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAAtg tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAAtggtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga Alignment from CESAR GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAAtg tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAAtggtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga Alignment from Spaln_aa2Genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga Alignment from Spaln_nt2Genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga Alignment from Pairagon GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga Alignment from Exonerate_protein2genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga Alignment from Exonerate_coding2genome GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga Alignment from GeneWise GGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAGGCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTGGGACTTCGAATG tttacaggagttcttgtgttgtctgcatttctctgtctgcatccccacagGGGGAGCCTTGTGTCATAGGCGAAAGAAAAATTTTCAAAAAACGCAAGCCAGGCACCCAGTGTGCCCTTGGCAGAGGGTACTCAGGGTTGGTTGTACCAGAACCCTGTGTCTGTGCAGATTGGGACTTTGAATGgtaccaaaagcattaccaggcccttaatctccttgtgtaattgctgtgga #### Sorcs3_ID10632_21 --> 0 - 1 Original Alignment CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCTT---GCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATggtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata Alignment from CESAR CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATg agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATggtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata Alignment from Spaln_aa2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata Alignment from Spaln_nt2Genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTCCT---TGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata Alignment from Pairagon CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACAT---TCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata Alignment from Exonerate_protein2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata Alignment from Exonerate_coding2genome CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata Alignment from GeneWise CCCCTCATCACCTTGGACAGCAGCATCTCTTTCACATTC---CTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCTGGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATG agatctgtcaggcatttaaccattataggtgtttctatcctttgttccagCCCCTCATCACCCTGGACAGCAGTATCTCTTTTAGTTTCCTCCTTGCAGATGGAACCAACACAATTGCTGTCCAGGTTGCAGCTGGAAATGCATTCATCCAGGACACAAAAGAGATTGCAGTACATGgtaagtgctgaggtgcaagacctcacttgagatggaagtttcagattata #### Sorcs3_ID10636_24 --> 0 - 1 Original Alignment ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAg actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAggtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa Alignment from CESAR ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAg actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAggtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa Alignment from Spaln_aa2Genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAGgtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa Alignment from Spaln_nt2Genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAGgtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa Alignment from Pairagon ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAGgtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa Alignment from Exonerate_protein2genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAGgtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa Alignment from Exonerate_coding2genome ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAGgtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa Alignment from GeneWise ATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGGTGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAG actagactcacctatctataatctttcatgagaagaactctatcctgcagGCTGTAGAGACACAGTTTAATTCACTTAACCAAAACTTAGTGCAATTTGAACTAAAGCCAGGTGTCCAGGTACTAATTTTTGTCACACAGCTTGCGTTAGgtgagttgcacaagaacccagaaatgaaacaagcatgctatctcaggaaa #### Sorcs3_ID10638_26 --> 1 - 1 Original Alignment gAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAg atatgtattcttattaccctcacctagcgggttgttgactgtttacacaggAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAggtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag Alignment from CESAR gAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAg atatgtattcttattaccctcacctagcgggttgttgactgtttacacaggAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAggtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag Alignment from Spaln_aa2Genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atatgtattcttattaccctcacctagcgggttgttgactgtttacacagGAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAGgtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag Alignment from Spaln_nt2Genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atatgtattcttattaccctcacctagcgggttgttgactgtttacacagGAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAGgtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag Alignment from Pairagon GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atatgtattcttattaccctcacctagcgggttgttgactgtttacacagGAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAGgtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag Alignment from Exonerate_protein2genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atatgtattcttattaccctcacctagcgggttgttgactgtttacacagGAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAGgtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag Alignment from Exonerate_coding2genome GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atatgtattcttattaccctcacctagcgggttgttgactgtttacacagGAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAGgtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag Alignment from GeneWise GAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTCAGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGACAAAGAGCTGGACACGCGGGTCATAG atatgtattcttattaccctcacctagcgggttgttgactgtttacacagGAAAATCCCATGGATTAACATCTATGCCCAGGTCCAGCATGACAGGGAACATGACATGATAGAATCAGTGATACAGAGTGAGAATGCACCCAAAATCACACTTGGTGACTTTACTGAACCTGAACAGCTGCTGGACAAAGAGCTAGACACACGAGTGATAGgtaagggtgcactaccatatagcattggcgagtaccagtgatttgctcag #### Sptbn2_ID613_8 --> 0 - 2 Original Alignment GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCaa ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccagGTTCTAGACCACACAATGGAGGCAGAACATCTGGTAGAGAGATATGAGTCCCTGGCCTCTGAACTGCTACAGTGGATTGAGCAAACAATTGTAACCCTCAATGACCAACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAATTGCAGTCCTTCAACTCCTATCGTACTGTGGAGAAGCCACCAaagtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa Alignment from CESAR GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCaa ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccagGTTCTAGACCACACAATGGAGGCAGAACATCTGGTAGAGAGATATGAGTCCCTGGCCTCTGAACTGCTACAGTGGATTGAGCAAACAATTGTAACCCTCAATGACCAACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAATTGCAGTCCTTCAACTCCTATCGTACTGTGGAGAAGCCACCAaagtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa Alignment from Spaln_aa2Genome GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccagGTTCTAGACCACACAATGGAGGCAGAACATCTGGTAGAGAGATATGAGTCCCTGGCCTCTGAACTGCTACAGTGGATTGAGCAAACAATTGTAACCCTCAATGACCAACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAATTGCAGTCCTTCAACTCCTATCGTACTGTGGAGAAGCCACCAAAgtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa Alignment from Spaln_nt2Genome GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccagGTTCTAGACCACACAATGGAGGCAGAACATCTGGTAGAGAGATATGAGTCCCTGGCCTCTGAACTGCTACAGTGGATTGAGCAAACAATTGTAACCCTCAATGACCAACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAATTGCAGTCCTTCAACTCCTATCGTACTGTGGAGAAGCCACCAAAgtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa Alignment from Pairagon GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccagGTTCTAGACCACACAATGGAGGCAGAACATCTGGTAGAGAGATATGAGTCCCTGGCCTCTGAACTGCTACAGTGGATTGAGCAAACAATTGTAACCCTCAATGACCAACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAATTGCAGTCCTTCAACTCCTATCGTACTGTGGAGAAGCCACCAAAgtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa Alignment from Exonerate_protein2genome ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccaggttctagaccacacaatggaggcagaacatctggtagagagatatgagtccctggcctctgaactgctacagtggattgagcaaacaattgtaaccctcaatgaccaacagctggccaactccctgagtggagtccagaaccaattgcagtccttcaactcctatcgtactgtggagaagccaccaaagtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa Alignment from Exonerate_coding2genome ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccaggttctagaccacacaatggaggcagaacatctggtagagagatatgagtccctggcctctgaactgctacagtggattgagcaaacaattgtaaccctcaatgaccaacagctggccaactccctgagtggagtccagaaccaattgcagtccttcaactcctatcgtactgtggagaagccaccaaagtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa Alignment from GeneWise GTCCTAGACCATGCCATGGAGGCAGAACACCTGGTAGAGAAATACGAGTCCCTGGCCTCTGAACTGCTGCAGTGGATTGAGCAAACGATCGTGACCCTCAATGACCGACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAGCTGCAGTCTTTCAACTCCTATCGCACTGTGGAGAAGCCACCCAA ctgcattaattgggaccagagagtcaacgtcttgcctccccatgccccagGTTCTAGACCACACAATGGAGGCAGAACATCTGGTAGAGAGATATGAGTCCCTGGCCTCTGAACTGCTACAGTGGATTGAGCAAACAATTGTAACCCTCAATGACCAACAGCTGGCCAACTCCCTGAGTGGAGTCCAGAACCAATTGCAGTCCTTCAACTCCTATCGTACTGTGGAGAAGCCACCAAAgtaggagtgccaggggccctgaccagcctggagatgccaaatgaataaaa #### Sptbn2_ID614_9 --> 1 - 0 Original Alignment gTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG aaggtcacctatgggcctcatctgccttgagtttttccattatttttcaggTTCACAGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATACAGAGTAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt Alignment from CESAR gTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG aaggtcacctatgggcctcatctgccttgagtttttccattatttttcaggTTCACAGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATACAGAGTAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt Alignment from Spaln_aa2Genome GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG aaggtcacctatgggcctcatctgccttgagtttttccattatttttcagGTTCACAGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATACAGAGTAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt Alignment from Spaln_nt2Genome GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG aaggtcacctatgggcctcatctgccttgagtttttccattatttttcagGTTCACAGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATACAGAGTAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt Alignment from Pairagon GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG aaggtcacctatgggcctcatctgccttgagtttttccattatttttcagGTTCACAGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATACAGAGTAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt Alignment from Exonerate_protein2genome aaggtcacctatgggcctcatctgccttgagtttttccattatttttcaggttcacagagaaagggaacttggaggtgttgctcttcaccatacagagtaagctacgggccaacaaccagaaggtctacacaccccgagaaggccgtcacatttcagacatcaacaaggtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt Alignment from Exonerate_coding2genome aaggtcacctatgggcctcatctgccttgagtttttccattatttttcaggttcacagagaaagggaacttggaggtgttgctcttcaccatacagagtaagctacgggccaacaaccagaaggtctacacaccccgagaaggccgtcacatttcagacatcaacaaggtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt Alignment from GeneWise GTTCACGGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATCCAGAGCAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGGGAAGGCCGGCTCATCTCGGACATCAACAAG aaggtcacctatgggcctcatctgccttgagtttttccattatttttcagGTTCACAGAGAAAGGGAACTTGGAGGTGTTGCTCTTCACCATACAGAGTAAGCTACGGGCCAACAACCAGAAGGTCTACACACCCCGAGAAGGCCGTCACATTTCAGACATCAACAAGgtaaaagttttgctgtttatctgaacatccacagaggtcatgttagcatt #### Sptbn2_ID631_26 --> 0 - 2 Original Alignment GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag Alignment from CESAR GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCcg tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCcggtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag Alignment from Spaln_aa2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag Alignment from Spaln_nt2Genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag Alignment from Pairagon GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag Alignment from Exonerate_protein2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag Alignment from Exonerate_coding2genome GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag Alignment from GeneWise GTCCAGCAAGTTCAAGATGATGGCCAAAGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGAAATTGGCCGTCACATGCAGGCAGTGGCTGAGGCCTGGGCCCAGCTCCAGGGAAGTTCTGCTGCCCGCCGACAGCTGTTACTGGATACCACGGACAAATTCCGATTCTTTAAGGCTGTCCGAGAGTTGATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCCCAGGAGCGGCCCCG tctgtgatctaccagctcttcctgtcctggctgtctcctctaacctccagGTCCAGCAAGTTCATGATGATGGCCCACGGCTACAGAAGGCCTATGCTGGAGACAAGGCTGAGGCAATTGGTCGTCATATGCAGGCAGTAGCTGAGGCCTGGGCCCAGCTCCAAGGAAGTTCTGCTGCCCGCCGACAGCTGCTACTTGATACAACGGATAAATTTCGATTCTTTAAGGCTGTCCGAGAGTTAATGCTGTGGATGGATGGGATTAACCTGCAGATGGATGCTCAGGAGCAACCCCGgtaagtctcatggtggctggcttcctccaaaagttacatggtgctactag #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACaggtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaggaggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACaggtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Spaln_aa2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Exonerate_coding2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtaggtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGGTAGGTGGTCCTTTTATTCATCATTATGTTTTACAGGGCTCTGAATGGAATGCTGCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtcctttgctacatgtcctatctccacagGGCTCTGAATGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattcatcattatgttttacagGGCTCTGAATGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtcctttgctacatgtcctatctccacagGGCTCTGAATGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtcctttgctacatgtcctatctccacagGGCTCTGAATGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtcctttgctacatgtcctatctccacagGGCTCTGAATGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtcctttgctacatgtcctatctccacagGGCTCTGAATGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtcctttgctacatgtcctatctccacagGGCTCTGAATGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGGTAGGAGGTCCTTTGCTACATGTCCTATCTCCACAGGGCTCTGAATGGAA #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttaggGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttaggGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttagGGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttagGGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttagGGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttagGGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttagGGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG tttgttgctactaactaagtgacaggtatttttgtgtttttcatttttagGGCCTCAGAGCAGGAAAAGACAGAGCAGGCAATCCTGGTAGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTAACTTCCAAAGAGgtatgtaatcaagcaggctggctgccgattgccttcctttgtgactctcc #### Ssh3_ID452_4 --> 0 - 2 Original Alignment GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCaggtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga Alignment from CESAR GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCag tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCaggtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga Alignment from Spaln_aa2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga Alignment from Spaln_nt2Genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTTG------ACTTCCCTGACAGCAGgtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga Alignment from Pairagon GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga Alignment from Exonerate_protein2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga Alignment from Exonerate_coding2genome GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga Alignment from GeneWise GCAGCCCAGCTGGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAG tgatgcccattgattgcccatttgatgcgagtccctggttgtccccacagGTTGCCCAATTGGAGGCAGCCCAACCTCCCAGAATTCAGTACCCACTGGTAGTATCCATGGGAGAAGAGCTGAGTGAAGAGGCTATTTTGCTT------GACTTCCCTGACAGCAGgtgagtagccaacaagaaaaggttaagttgaggctccaatgtgctggtga #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from CESAR ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Pairagon CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG cagactgctccttcttcctaaatttcgttatatatatctttcttttctagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTAGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtacaatacatatgtgcttggttatagtctaagtatactgctatggacct #### Stx3_ID3303_3 --> 0 - 1 Original Alignment ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAa ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAagtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg Alignment from CESAR ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAa ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAagtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg Alignment from Spaln_aa2Genome ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAAgtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg Alignment from Spaln_nt2Genome ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAAgtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg Alignment from Pairagon ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAAgtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg Alignment from Exonerate_protein2genome ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAAgtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg Alignment from Exonerate_coding2genome ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAAgtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg Alignment from GeneWise ATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAA ctttcgttttatttagtgcagtgcagaacacaactagcctctttcctcagATTGAGGAGACACACCTCAACATTGACAAGATTTCAGAGCATGTGGAGGAAGCTAAGAAACTCTATAGTATCATTCTCTCTGCACCAATCCCAGAGCCAAgtaagtgcttactaacctgagtggtgcatggacaactgaccatgggatgg #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gagtggctgggcaaaggtgactacatcaacatttctgaactttccattagAATGGAATCCAAACAAGCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtaggctgtaggggtcttggagggtggaaggttttttgaaatttgtaagg #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCtgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from CESAR gCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCtgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Spaln_aa2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Spaln_nt2Genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Pairagon GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Exonerate_protein2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Exonerate_coding2genome GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from GeneWise GCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAAGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg #### Stx5a_ID2332_4 --> 2 - 0 Original Alignment tgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagtgGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg Alignment from CESAR tgGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagtgGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg Alignment from Spaln_aa2Genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagTGGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg Alignment from Spaln_nt2Genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagTGGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg Alignment from Pairagon TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagTGGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg Alignment from Exonerate_protein2genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagTGGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg Alignment from Exonerate_coding2genome TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagTGGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg Alignment from GeneWise TGGCAAAGCGCAAGTCCCTCTTTGATGATAAAGCAGTAGAAATTGAGGAGCTAACATACATCATCAAACAG agacttaaatccctgcaccctggcaggacccgtggtgatttttcttccagTGGCAAACCGCAAGTCCCTCTTTGATGATAAAGCGGTAGAGATTGAGGAGCTGACCTACATCATCAAGCAGgtaggatgttgattgtcctgacactgagcatcactgcggcacgctagatg #### Sufu_ID9896_4 --> 2 - 0 Original Alignment agAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagagAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca Alignment from CESAR agAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagagAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca Alignment from Spaln_aa2Genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagAGAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca Alignment from Spaln_nt2Genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagAGAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca Alignment from Pairagon AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagAGAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca Alignment from Exonerate_protein2genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagAGAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca Alignment from Exonerate_coding2genome AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagAGAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca Alignment from GeneWise AGAACACCTTCTGTAGCGGGGACCATGTGTCTTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACGGAGGACCCACAGATGCAGCCTGTGCGGACACCCTTTGGGGTAGTGACTTTCCTCCAG gcatagtatcaagcctgtgttccctgccccaccatgtctgtgctctgcagAGAACACCATCTGTAGTGGGGACCATGTATCTTGGCACAGCCCTTTGGATAACAGTGAGTCCAGAATTCAGCACATGCTGCTGATGGATGACCCACAAATGCAACCTGTGCAGACTCCCTTTGGGGTAGTGACTTTTCTCCAGgtaaggtttattggatgcccaaaacatttaaggtcaacagtttaggaaca #### Sufu_ID9914_11 --> 0 - 0 Original Alignment ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt Alignment from CESAR ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt Alignment from Spaln_aa2Genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt Alignment from Spaln_nt2Genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt Alignment from Pairagon ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt Alignment from Exonerate_protein2genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt Alignment from Exonerate_coding2genome ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt Alignment from GeneWise ATTCTGTTGACAGAAGAGTTTGTAGAGAAGATGTTGGAGGACTTAGAAGATCTAACCTCTCCAGAGGAA aatagaccctgtatctaatatcaaaaaatcttgcttccctttctacacagATTCTATTGACAGAAGAGTTTGTAGAGAGGATGCTGGAGGACTTAGAAGATCTAACCTCCCCAGAGGAAgtaaggatattctgcttgccttaaaacaactgtgcattaatttcagatgt #### Suv420h1_ID147_9 --> 1 - 1 Original Alignment aCGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAa tggccatttttccttttctctgttttgctgtgttttctttacccctacagaCGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAagtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg Alignment from CESAR aCGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAa tggccatttttccttttctctgttttgctgtgttttctttacccctacagaCGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAagtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg Alignment from Spaln_aa2Genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA tggccatttttccttttctctgttttgctgtgttttctttacccctacagACGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg Alignment from Spaln_nt2Genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA tggccatttttccttttctctgttttgctgtgttttctttacccctacagACGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGA---CAGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg Alignment from Pairagon ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA tggccatttttccttttctctgttttgctgtgttttctttacccctacagACGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGA---CAGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg Alignment from Exonerate_protein2genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA tggccatttttccttttctctgttttgctgtgttttctttacccctacagACGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg Alignment from Exonerate_coding2genome ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA tggccatttttccttttctctgttttgctgtgttttctttacccctacagACGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGAC---AGCAAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg Alignment from GeneWise ACGGGGAACTGGTGCTTTTAAATCACGAGTAGGACTGCCTGCGCCTGCTCCTGTTATCAATAGCAAATACGGACTTAGAGAAACAGATAAACGCTTAAATAGGCTTAAAAAGTTAGGTGACAGCAGCAAAAACTCAGACAGTCAGTCTGTCAGCTCTAACACAGATGCAGACACCACTCAGGAAAAAGACAATGCAA tggccatttttccttttctctgttttgctgtgttttctttacccctacagACGCGGAACTGGTGCCTTTAAATCTCGAGTAGGAGTGCTTGCACCTGCTCCAGTTATCAATAGCAAATATGGACTTAGAGAAACAGATAAGCACTTAAATAGGCTCAAAAAGTTAGGTGACAGC---AAAAACTCTGATAGTCAGTCTGTTAGCTCTAACACAGATGCTGACACCACTCAAGAAAAAGATAATGCAAgtgactggtacagcaacaccaacatgacaatagtgcgactcaagaacttg #### Syt7_ID2810_3 --> 0 - 2 Original Alignment GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCaa tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCaagtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct Alignment from CESAR GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCaa tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCaagtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct Alignment from Spaln_aa2Genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCAAgtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct Alignment from Spaln_nt2Genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCAAgtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct Alignment from Pairagon GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCAAgtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct Alignment from Exonerate_protein2genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCAAgtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct Alignment from Exonerate_coding2genome GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCAAgtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct Alignment from GeneWise GGCAAACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCCATCAA tccttggattcacccaactgtagttatcttctcacctttttacacttcagGGCAAACGCTATAAGAATTCCTCAGAGATGGTTGGCACACCAGACTCAGGTCGTGGACGTGGCGAGAAGAAAGCCATCAAgtaaggccaggcttctagtgtgggtcagatatagatattgagaaccccct #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCtgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCtgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc Alignment from GeneWise ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT atctcctgatgaacatgtgggtgtctcttgttctgtgcctccctctctagATGGAGCGTAGTCCCAACATTTCCTGGCTCTTCCACTGCAGGATTGTCTgtaaacgaaacttcataaattagagggtattttgtgtgagggagatcagc #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagctCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac #### Taf5_ID10096_4 --> 0 - 2 Original Alignment GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACaggtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc Alignment from CESAR GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACaggtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc Alignment from Spaln_aa2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACAGgtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc Alignment from Spaln_nt2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACAGgtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc Alignment from Pairagon GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACAGgtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc Alignment from Exonerate_protein2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACAGgtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc Alignment from Exonerate_coding2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACAGgtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc Alignment from GeneWise GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaacatgaaccagtttaggattgttttttgttttctctgtagGTGTTTTTTGGGTTACTAAAAGAACCGGACATTGAGGTTCCCTTGGATGACAAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCAAAAAAAAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGGTCCCAATGCCCCACCTCAAAACAGgtgaggagcgtataaaggttaaagccatggctaaaggagtgaagtgggtc #### Taf5_ID10101_9 --> 1 - 0 Original Alignment gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcaggCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa Alignment from CESAR gCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcaggCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa Alignment from Spaln_aa2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa Alignment from Spaln_nt2Genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa Alignment from Pairagon GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa Alignment from Exonerate_protein2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa Alignment from Exonerate_coding2genome GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa Alignment from GeneWise GCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGATGTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGCTCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAG atttgatgttcatcgaaactccctgtctactgacgttttctttctttcagGCTTTGGACTACCGATCACTATCAACCTTTAAGGATATTTGCTGTTCATCTTGCTGATGTTAACTGCACTAGATTTCATCCTAATTCAAACTGTGTCTCTACAGGCTCAGCAGACAGGACTGCGCGCCTCTGGGACGTGCTGAATGGTAACTCTGTAAGAATATACACTGGGCATAAGgtagaactcaccttcaatattattttactgtacataaatgtttttcagaa #### Tbc1d10c_ID396_8 --> 2 - 0 Original Alignment ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcaggtGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat Alignment from CESAR ggGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcaggtGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat Alignment from Spaln_aa2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcagGTGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat Alignment from Spaln_nt2Genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcagGTGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat Alignment from Pairagon GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcagGTGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat Alignment from Exonerate_protein2genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcagGTGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat Alignment from Exonerate_coding2genome GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcagGTGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat Alignment from GeneWise GGGCTAAGGTACTGTTCCGCGTGGGGCTGACACTGATGCGCCTGGCACTGGGCACTGTAGAACAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGGGCCCTACGAGCCATTCCCCCTACCCAGCTGCAGGAAGAGGTCTTCATGTCCCAG cctgaggcaaatgtgacttatttttgcacattgtcttctttattgttcagGTGCTAAAGTGTTGTTCCGTGTAGGCCTTTCACTAATGCGCCTGGCTTTGGGCACTGTAGAGAAGCGCACAGCATGCCCAGGGCTCCTGGAGACATTGGGCGCACTACGGGCCATTCCACCCACCCAACTACAAGAAGAGGTCTTTATGACTCAGgtatccatccctctctgcaaagcatcagtggtcctgcctgtgctgcatat #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtcagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATgggtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from CESAR TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACgg TATCAGgtgagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATgggtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Spaln_aa2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtcagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Spaln_nt2Genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtcagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Pairagon TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtcagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Exonerate_protein2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtcagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from Exonerate_coding2genome TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtcagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata Alignment from GeneWise TACCAG GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG TATCAGgtcagtaggctaggaagtgccctattatcgctttgctgccctagGAACTGGCATCAGCCCCCGGGGACCCTCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCTTTGCATGAGATGTTTGTCTTGCCTCAAGGACATGGgtaaccgttcaggaaggagcctattcagacaacaatctccattgtccata #### Tbc1d12_ID7683_6 --> 1 - 1 Original Alignment gCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTg actttgtggtacatggtgcataatgggtatatttttcttcattattttaggCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTggtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa Alignment from CESAR gCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTg actttgtggtacatggtgcataatgggtatatttttcttcattattttaggCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTggtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa Alignment from Spaln_aa2Genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggtatatttttcttcattattttagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTGgtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa Alignment from Spaln_nt2Genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggtatatttttcttcattattttagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTGgtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa Alignment from Pairagon GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggtatatttttcttcattattttagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTGgtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa Alignment from Exonerate_protein2genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggtatatttttcttcattattttagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTGgtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa Alignment from Exonerate_coding2genome GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggtatatttttcttcattattttagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTGgtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa Alignment from GeneWise GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG actttgtggtacatggtgcataatgggtatatttttcttcattattttagGCGTAGTACCAGAAGAGTTAGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTCAGCAATGAACTAAATATAACTCCTGgtcagtcttcccatgtttagatattcccttcataaaagtccatttcttaa #### Tbc1d12_ID7688_11 --> 0 - 2 Original Alignment ATGTTGAAGTATTTTGCAACA------TTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTtggtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag Alignment from CESAR ATGTTGAAGTATTTTGCA------ACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTG---ATAGATtg tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTtggtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag Alignment from Spaln_aa2Genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTTGgtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag Alignment from Spaln_nt2Genome ATGTTGAAGTATTTTGCAAC------ATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGATA---GATTG tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTTGgtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag Alignment from Pairagon ATGTTGAAGTATTT------TGCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGATA---GATTG tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTTGgtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag Alignment from Exonerate_protein2genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTTGgtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag Alignment from Exonerate_coding2genome ATGTTGAAGTATTTT------GCAACATTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTTGgtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag Alignment from GeneWise ATGTTGAAGTATTTTGCAACA------TTTGAAGTATTCTTTGAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATAT---TTGATAGATTG tggttttgatggactcctttacaattcttcatgttttctgctttatcaagATGCTGAAGTATTTTGCAACTGCAACATTTGAAGTGTTCTTTGAGGAGAACCTATCTAAATTGTTTCTTCATTTTAAGTCATACAATCTGACACCAGATATATATTCAACAATTGTTTGgtaacgcactacaaaccatttaatatgttcaaatacaaatgtgaggcaag #### Tbc1d12_ID7689_12 --> 1 - 0 Original Alignment gATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctaggATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat Alignment from CESAR gATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctaggATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat Alignment from Spaln_aa2Genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat Alignment from Spaln_nt2Genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat Alignment from Pairagon GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat Alignment from Exonerate_protein2genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat Alignment from Exonerate_coding2genome GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat Alignment from GeneWise GATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAG gctacttatctggaaaggaaccttatatgtgatctgctactctttcctagGATCTTCACATTGTACAGCGTATCATTGCCACTTGATTTGGCTTGTCGAGTCTGGGATGTGTTTTGTAGAGATGGGGAGGAGTTCTTATTTCGGACTGGATTGGGGATCCTCCGGCTATATGAAGATATACTCCTACAGATGGACTTTATTCATATAGTACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTTTCAGCTGCATCGCAGCCATCCAGATGCGGAATAGCACCAAGAAATGGACTCAGgtgagttctgttctgaaccctaaacaatgttttaagattcctcacaggat #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgttggttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgtgtggtcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgttggttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgttggttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgttggttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgttggttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgttggttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AAGAGgttggttcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtaactgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATtggtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from CESAR CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CAGTGGCAgtgagtgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATtggtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Spaln_aa2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaactgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Spaln_nt2Genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaactgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Pairagon CAGTGAC------------------------------------------GGGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAGTAACTGTAAAGGCAGGACTTCATGTCTCTTTGTCACTGTAGGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Exonerate_protein2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaactgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from Exonerate_coding2genome CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaactgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc Alignment from GeneWise CAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CAGTGGCAgtaactgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCCTGCAACCTGGATGACCTTTATCATATCCTACTGGGGTGAGCAGATTGGTCAGAAGATCCGAAAGATCACAGATTGgtaagtaggtatcctcattgcccagtacaagtagcagtcaattcgctgtc #### Tctn3_ID7991_10 --> 0 - 0 Original Alignment GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt Alignment from CESAR GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt Alignment from Spaln_aa2Genome GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt Alignment from Spaln_nt2Genome GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt Alignment from Pairagon GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt Alignment from Exonerate_protein2genome GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt Alignment from Exonerate_coding2genome GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt Alignment from GeneWise GCATTTCAACAGAGAAAGGCCGCTGCTCCTGCTGCTCCGAGAAGTGGGAATCCTGGCTACCTCACTGGGAAGCCACTCTTAGTGCTAACTGGTGACACAAGTCACTCG ctttactttataagttagtgtggcacagcccgccacagtttatcggacagGCATTTCAACAGAGGAAGGCTGCCGCATCTGCGGCCCCTAGGAGTGGAAATCCTGGCTACCTTACAGGGAAACCACTCTTGGTACTAACTGGTGACACAAGTCATTCTgtataaattggtagtggtattcattgttgcatcatgatacaaaagtagtt #### Tctn3_ID7994_7 --> 0 - 0 Original Alignment GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga Alignment from CESAR GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga Alignment from Spaln_aa2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga Alignment from Spaln_nt2Genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga Alignment from Pairagon GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga Alignment from Exonerate_protein2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga Alignment from Exonerate_coding2genome GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga Alignment from GeneWise GTTCCAAGAGGTGTGACTGATCTTCAGAATATGAAG tttagtgataatttgcaagctacccctaacaaatgagctttctttcttagGTTCCAAGAGGTGTTACTGATCTTCAGAATATGAAGgtaaggtgctacataacaacaagtagcctggagatgcaccccagtggtga #### Tdrd1_ID12202_3 --> 0 - 1 Original Alignment AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAA------TCTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTg tatttcataggaaccaagcagtatttctctgccatgtccacctggtgaagAAACCAAGCAGTAATGTAACTCCAGGGATGTCTAAAAAATCCCACCCCCACCAGTTGTTTGAGAATGCTTTATCTGTAAATAACCCAGCACTCTTCAACTCATTGGGCCCACCCCTTCGTTTAACAACCTGCCACTGCTGTGGCCTGTTTggtatccaagcttgatttagatggcttcatgccaatacttcaaggaaatat Alignment from CESAR AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCAC------AAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTg tatttcataggaaccaagcagtatttctctgccatgtccacctggtgaagAAACCAAGCAGTAATGTAACTCCAGGGATGTCTAAAAAATCCCACCCCCACCAGTTGTTTGAGAATGCTTTATCTGTAAATAACCCAGCACTCTTCAACTCATTGGGCCCACCCCTTCGTTTAACAACCTGCCACTGCTGTGGCCTGTTTggtatccaagcttgatttagatggcttcatgccaatacttcaaggaaatat Alignment from Spaln_aa2Genome AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCT------CACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG tatttcataggaaccaagcagtatttctctgccatgtccacctggtgaagAAACCAAGCAGTAATGTAACTCCAGGGATGTCTAAAAAATCCCACCCCCACCAGTTGTTTGAGAATGCTTTATCTGTAAATAACCCAGCACTCTTCAACTCATTGGGCCCACCCCTTCGTTTAACAACCTGCCACTGCTGTGGCCTGTTTGgtatccaagcttgatttagatggcttcatgccaatacttcaaggaaatat Alignment from Spaln_nt2Genome AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCACA------AGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG tatttcataggaaccaagcagtatttctctgccatgtccacctggtgaagAAACCAAGCAGTAATGTAACTCCAGGGATGTCTAAAAAATCCCACCCCCACCAGTTGTTTGAGAATGCTTTATCTGTAAATAACCCAGCACTCTTCAACTCATTGGGCCCACCCCTTCGTTTAACAACCTGCCACTGCTGTGGCCTGTTTGgtatccaagcttgatttagatggcttcatgccaatacttcaaggaaatat Alignment from Pairagon AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAAT------CTCACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG tatttcataggaaccaagcagtatttctctgccatgtccacctggtgaagAAACCAAGCAGTAATGTAACTCCAGGGATGTCTAAAAAATCCCACCCCCACCAGTTGTTTGAGAATGCTTTATCTGTAAATAACCCAGCACTCTTCAACTCATTGGGCCCACCCCTTCGTTTAACAACCTGCCACTGCTGTGGCCTGTTTGgtatccaagcttgatttagatggcttcatgccaatacttcaaggaaatat Alignment from Exonerate_protein2genome AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCT------CACAAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG tatttcataggaaccaagcagtatttctctgccatgtccacctggtgaagAAACCAAGCAGTAATGTAACTCCAGGGATGTCTAAAAAATCCCACCCCCACCAGTTGTTTGAGAATGCTTTATCTGTAAATAACCCAGCACTCTTCAACTCATTGGGCCCACCCCTTCGTTTAACAACCTGCCACTGCTGTGGCCTGTTTGgtatccaagcttgatttagatggcttcatgccaatacttcaaggaaatat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAGCCCAGCAGTAATGTGACTCCTGAAAAATCAAAAAAATCTCAC------AAGTTGTTTGAGAATGCCTTGTCCGTAAATAATCCAGCACTCTTCAACTCGTTAGGACCGCCCCTTCGGTCAACAACCTGCCACCGCTGTGGCCTGTTTG tatttcataggaaccaagcagtatttctctgccatgtccacctggtgaagAAACCAAGCAGTAATGTAACTCCAGGGATGTCTAAAAAATCCCACCCCCACCAGTTGTTTGAGAATGCTTTATCTGTAAATAACCCAGCACTCTTCAACTCATTGGGCCCACCCCTTCGTTTAACAACCTGCCACTGCTGTGGCCTGTTTGgtatccaagcttgatttagatggcttcatgccaatacttcaaggaaatat #### Tdrd1_ID12203_4 --> 2 - 2 Original Alignment ggTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAag atgcataagtctgacaggtacactgttctcctcctcctggtgtcttgcagggTCATTAAGGTGCTCCCAATGCAAGCAAATGTACTACTGCTCCACAGCCTGCCACAGGAGAGACTGGTCTTCACACACCACGATCTGTAGGCCTGTACAACAAaggtattaactggtttattcaactaaggctcagctctggttatcatattgta Alignment from CESAR ggTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAag atgcataagtctgacaggtacactgttctcctcctcctggtgtcttgcagggTCATTAAGGTGCTCCCAATGCAAGCAAATGTACTACTGCTCCACAGCCTGCCACAGGAGAGACTGGTCTTCACACACCACGATCTGTAGGCCTGTACAACAAaggtattaactggtttattcaactaaggctcagctctggttatcatattgta Alignment from Spaln_aa2Genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG atgcataagtctgacaggtacactgttctcctcctcctggtgtcttgcagGGTCATTAAGGTGCTCCCAATGCAAGCAAATGTACTACTGCTCCACAGCCTGCCACAGGAGAGACTGGTCTTCACACACCACGATCTGTAGGCCTGTACAACAAAGgtattaactggtttattcaactaaggctcagctctggttatcatattgta Alignment from Spaln_nt2Genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG atgcataagtctgacaggtacactgttctcctcctcctggtgtcttgcagGGTCATTAAGGTGCTCCCAATGCAAGCAAATGTACTACTGCTCCACAGCCTGCCACAGGAGAGACTGGTCTTCACACACCACGATCTGTAGGCCTGTACAACAAAGgtattaactggtttattcaactaaggctcagctctggttatcatattgta Alignment from Pairagon GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG atgcataagtctgacaggtacactgttctcctcctcctggtgtcttgcagGGTCATTAAGGTGCTCCCAATGCAAGCAAATGTACTACTGCTCCACAGCCTGCCACAGGAGAGACTGGTCTTCACACACCACGATCTGTAGGCCTGTACAACAAAGgtattaactggtttattcaactaaggctcagctctggttatcatattgta Alignment from Exonerate_protein2genome GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG atgcataagtctgacaggtacactgttctcctcctcctggtgtcttgcagGGTCATTAAGGTGCTCCCAATGCAAGCAAATGTACTACTGCTCCACAGCCTGCCACAGGAGAGACTGGTCTTCACACACCACGATCTGTAGGCCTGTACAACAAAGgtattaactggtttattcaactaaggctcagctctggttatcatattgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGTCGCTGAGGTGCTCCCAGTGCAAGCAGACGTACTACTGCTCCACGGCCTGCCAGAGGAGAGACTGGTCTTCCCACAGCACCATCTGTAGGCCTGTACAGCAAAG atgcataagtctgacaggtacactgttctcctcctcctggtgtcttgcagGGTCATTAAGGTGCTCCCAATGCAAGCAAATGTACTACTGCTCCACAGCCTGCCACAGGAGAGACTGGTCTTCACACACCACGATCTGTAGGCCTGTACAACAAAGgtattaactggtttattcaactaaggctcagctctggttatcatattgta #### Tdrd1_ID12208_9 --> 0 - 1 Original Alignment GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg atgtgacaaattcttttcagttacacacattattttcccttcttttctagGCCTTAAAGTGCTGTGTGTCAGGTGTCATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAggtaagagaatgaaataccttttatcccttcttaactatctagttcactct Alignment from CESAR GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAg atgtgacaaattcttttcagttacacacattattttcccttcttttctagGCCTTAAAGTGCTGTGTGTCAGGTGTCATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAggtaagagaatgaaataccttttatcccttcttaactatctagttcactct Alignment from Spaln_aa2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG atgtgacaaattcttttcagttacacacattattttcccttcttttctagGCCTTAAAGTGCTGTGTGTCAGGTGTCATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagagaatgaaataccttttatcccttcttaactatctagttcactct Alignment from Spaln_nt2Genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG atgtgacaaattcttttcagttacacacattattttcccttcttttctagGCCTTAAAGTGCTGTGTGTCAGGTGTCATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagagaatgaaataccttttatcccttcttaactatctagttcactct Alignment from Pairagon GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG atgtgacaaattcttttcagttacacacattattttcccttcttttctagGCCTTAAAGTGCTGTGTGTCAGGTGTCATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagagaatgaaataccttttatcccttcttaactatctagttcactct Alignment from Exonerate_protein2genome GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG atgtgacaaattcttttcagttacacacattattttcccttcttttctagGCCTTAAAGTGCTGTGTGTCAGGTGTCATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagagaatgaaataccttttatcccttcttaactatctagttcactct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCCATAAAGTGCTGTGTGTCAGGCGTCATTCCCACTGCGGGCGAGTGGAGTGAAGGCTGTGTTGCAGCTGTCAAGGCCCTTCTGTTTGAGCAGTTCTGCTCTGTCAAGGTCATGGACATCTTAGAGGAGGAGGTACTCACCTGTGCCGTTGACCTTGTTCTACAGAGCTCAG atgtgacaaattcttttcagttacacacattattttcccttcttttctagGCCTTAAAGTGCTGTGTGTCAGGTGTCATTCCCTCTGCAGGTGAGTGGAGTGAAGGCTGTGTTACAGCTGTGAAGGCCCTTCTGTTTGAGCAATTCTGCTCTGTCAAGGTCATGGTAATCATAGAGGAGGAGGTACTCACGTGTGCTGTTGATCTTGTCTTACAGAGTTCAGgtaagagaatgaaataccttttatcccttcttaactatctagttcactct #### Tdrd1_ID12212_13 --> 2 - 1 Original Alignment agGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAg gcgctatgatgggctaatagggcacagacacaccctcttctttgtggtagagGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAggtaagctaaagcaggtattcaaagagtgcagggtgcagattatttgaggg Alignment from CESAR agGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAg gcgctatgatgggctaatagggcacagacacaccctcttctttgtggtagagGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAggtaagctaaagcaggtattcaaagagtgcagggtgcagattatttgaggg Alignment from Spaln_aa2Genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctatgatgggctaatagggcacagacacaccctcttctttgtggtagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagctaaagcaggtattcaaagagtgcagggtgcagattatttgaggg Alignment from Spaln_nt2Genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctatgatgggctaatagggcacagacacaccctcttctttgtggtagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagctaaagcaggtattcaaagagtgcagggtgcagattatttgaggg Alignment from Pairagon AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctatgatgggctaatagggcacagacacaccctcttctttgtggtagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagctaaagcaggtattcaaagagtgcagggtgcagattatttgaggg Alignment from Exonerate_protein2genome AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctatgatgggctaatagggcacagacacaccctcttctttgtggtagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagctaaagcaggtattcaaagagtgcagggtgcagattatttgaggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGGATGATCAGTGGTACCGCGCCTCGGTTCTGGCCTACGCTTCTGAAGAATCTGTCCTGGTTGGATATGTCGATTATGGGAACTTTGAGATTCTCAGTCTGAAAAGACTTTGTCCCATAATTCCAAAGTTGTTGGATTTGCCGATGCAAGCTCTAAATTGTGTGCTGGCAG gcgctatgatgggctaatagggcacagacacaccctcttctttgtggtagAGGATGATCAATGGTACTGCACCACAGTGCTGGCCTATGCTTCTCAAGAATCTGTTCTGGTAGGATATGTTGATTATGGGAACTTTGAGATTCTAAGCTTGAAACGTCTTTGTCCCATTATTCCAAAGTTGTTGGATTTGCCGATGCAAGCCCTGAATTGTGTGCTGGCAGgtaagctaaagcaggtattcaaagagtgcagggtgcagattatttgaggg #### Tdrd1_ID12213_14 --> 2 - 1 Original Alignment gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg tgactgccaatgcccaaagtatggtttccaccccttttctttctcaacaggtGTAGAGCCATCACTAGGATTTTGGACTCCAGAGGCTGTGTGTGTTATGAAAGAGATGGTGCAAAACAGGATGGTTGCAGTGAGAGTG------GTTCTGGGCACCAGGGCTTTGGTGAAGCTCGTTGACAAGACTGTGGCTCCCCATGTGAGTGCTTCTAAAGCCCTCATTGACTCAGGCTTCACCATTAAAGAGAAGGATGTGGCCGACAAG---GGCAGCACACACACATCCAGTggtactggtgatctagtgccaaagcagagatccaggtgttaggagagctgt Alignment from CESAR gcGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTg tgactgccaatgcccaaagtatggtttccaccccttttctttctcaacaggtGTAGAGCCATCACTAGGATTTTGGACTCCAGAGGCTGTGTGTGTTATGAAAGAGATGGTGCAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTGGTGAAGCTCGTTGACAAGACTGTGGCTCCCCATGTGAGTGCTTCTAAAGCCCTCATTGACTCAGGCTTCACCATTAAAGAGAAGGATGTGGCCGACAAGGGCAGC---ACACACACATCCAGTggtactggtgatctagtgccaaagcagagatccaggtgttaggagagctgt Alignment from Spaln_aa2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG tgactgccaatgcccaaagtatggtttccaccccttttctttctcaacagGTGTAGAGCCATCACTAGGATTTTGGACTCCAGAGGCTGTGTGTGTTATGAAAGAGATGGTGCAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTGGTGAAGCTCGTTGACAAGACTGTGGCTCCCCATGTGAGTGCTTCTAAAGCCCTCATTGACTCAGGCTTCACCATTAAAGAGAAGGATGTGGCCGACAAGGGCAGCACA---CACACATCCAGTGgtactggtgatctagtgccaaagcagagatccaggtgttaggagagctgt Alignment from Spaln_nt2Genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG tgactgccaatgcccaaagtatggtttccaccccttttctttctcaacagGTGTAGAGCCATCACTAGGATTTTGGACTCCAGAGGCTGTGTGTGTTATGAAAGAGATGGTGCAAAACAGGATGGTTGCAGTGAGAGTGG------TTCTGGGCACCAGGGCTTTGGTGAAGCTCGTTGACAAGACTGTGGCTCCCCATGTGAGTGCTTCTAAAGCCCTCATTGACTCAGGCTTCACCATTAAAGAGAAGGATGTGGCCGACAAGGGCAGC---ACACACACATCCAGTGgtactggtgatctagtgccaaagcagagatccaggtgttaggagagctgt Alignment from Pairagon GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG tgactgccaatgcccaaagtatggtttccaccccttttctttctcaacagGTGTAGAGCCATCACTAGGATTTTGGACTCCAGAGGCTGTGTGTGTTATGAAAGAGATGGTGCAAAACAGGATGGTTGCAGTGAGAGTGG------TTCTGGGCACCAGGGCTTTGGTGAAGCTCGTTGACAAGACTGTGGCTCCCCATGTGAGTGCTTCTAAAGCCCTCATTGACTCAGGCTTCACCATTAAAGAGAAGGATGTGGCCGACAAGGGCAGC---ACACACACATCCAGTGgtactggtgatctagtgccaaagcagagatccaggtgttaggagagctgt Alignment from Exonerate_protein2genome GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTGTTCCCT tgactgccaatgcccaaagtatggtttccaccccttttctttctcaacagGTGTAGAGCCATCACTAGGATTTTGGACTCCAGAGGCTGTGTGTGTTATGAAAGAGATGGTGCAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTGGTGAAGCTCGTTGACAAGACTGTGGCTCCCCATGTGAGTGCTTCTAAAGCCCTCATTGACTCAGGCTTCACCATTAAAGAGAAGGATGTGGCCGACAAGGGCAGCACA---CACACATCCAGTGGTACTGgtgatctagtgccaaagcagagatccaggtgttaggagagctgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCGTGAAGCCATCATTAGGAATTTGGACTCCAGAAGCTGTGTGTGTCATGAAAGAGATGGTACAGAACAGGATGGTCACAGTGAGAGTGGTGGGCATGCTGGGGACCAGGGCCCTGGTGGAGCTCATCGACAAGTCGGTGGCTCCTCACGTCAGCGCTTCTAAAGCTCTCATAGACTCGGGCTTTGCCATCAAAGAAAAGGACGTGGCAGATAAAGGCAGCAGTATGCACACAGCCAGTG tgactgccaatgcccaaagtatggtttccaccccttttctttctcaacagGTGTAGAGCCATCACTAGGATTTTGGACTCCAGAGGCTGTGTGTGTTATGAAAGAGATGGTGCAAAACAGGATGGTTGCAGTGAGAGTGGTT------CTGGGCACCAGGGCTTTGGTGAAGCTCGTTGACAAGACTGTGGCTCCCCATGTGAGTGCTTCTAAAGCCCTCATTGACTCAGGCTTCACCATTAAAGAGAAGGATGTGGCCGACAAGGGCAGCACA---CACACATCCAGTGgtactggtgatctagtgccaaagcagagatccaggtgttaggagagctgt #### Tdrd1_ID12215_16 --> 2 - 1 Original Alignment ccTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAg gtgacaaatcattgatcttgaataggctcagtggtgctatgtacctgcagcaTTGGATAAGCTCGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACGGATTTAAAGCAGAAATGGGGCGTCCTTGTTGTGCATTCTTTTCAggtgaggtcaactttcagttcgcatttatgtgtggcccattatcccagggg Alignment from CESAR ccTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAg gtgacaaatcattgatcttgaataggctcagtggtgctatgtacctgcagcaTTGGATAAGCTCGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACGGATTTAAAGCAGAAATGGGGCGTCCTTGTTGTGCATTCTTTTCAggtgaggtcaactttcagttcgcatttatgtgtggcccattatcccagggg Alignment from Spaln_aa2Genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtgacaaatcattgatcttgaataggctcagtggtgctatgtacctgcagCATTGGATAAGCTCGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACGGATTTAAAGCAGAAATGGGGCGTCCTTGTTGTGCATTCTTTTCAGgtgaggtcaactttcagttcgcatttatgtgtggcccattatcccagggg Alignment from Spaln_nt2Genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtgacaaatcattgatcttgaataggctcagtggtgctatgtacctgcagCATTGGATAAGCTCGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACGGATTTAAAGCAGAAATGGGGCGTCCTTGTTGTGCATTCTTTTCAGgtgaggtcaactttcagttcgcatttatgtgtggcccattatcccagggg Alignment from Pairagon CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtgacaaatcattgatcttgaataggctcagtggtgctatgtacctgcagCATTGGATAAGCTCGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACGGATTTAAAGCAGAAATGGGGCGTCCTTGTTGTGCATTCTTTTCAGgtgaggtcaactttcagttcgcatttatgtgtggcccattatcccagggg Alignment from Exonerate_protein2genome CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtgacaaatcattgatcttgaataggctcagtggtgctatgtacctgcagCATTGGATAAGCTCGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACGGATTTAAAGCAGAAATGGGGCGTCCTTGTTGTGCATTCTTTTCAGgtgaggtcaactttcagttcgcatttatgtgtggcccattatcccagggg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCTTAGAGAAGCTCGATGACTTGAATCAGTCCTTAGCAGACTACTGTGCACAAAAGCCGCCCAATGGCTTTAAGGCAGAGATAGGGCGGCCTTGCTGTGCCTTTTTTTCAG gtgacaaatcattgatcttgaataggctcagtggtgctatgtacctgcagCATTGGATAAGCTCGATGACTTGAATCAGTCTTTAGCAGACTACTGTGCACAAAAGCCACCCAACGGATTTAAAGCAGAAATGGGGCGTCCTTGTTGTGCATTCTTTTCAGgtgaggtcaactttcagttcgcatttatgtgtggcccattatcccagggg #### Tdrd1_ID12218_19 --> 2 - 1 Original Alignment ccAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg gtcgcaagcactgtttggtgtatgaggacggtttctctcttaacttacagctAGACCCTCGGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAACGAGAACATAGCAGCAAATGTGCTAGAAACCATAAGCCCAGCCTTGTTGTATGCTATCCCCAGTGAAATGGCAggtaagtagggagtttactgctgccacacacctctcctggtcatctgtgta Alignment from CESAR ccAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAg gtcgcaagcactgtttggtgtatgaggacggtttctctcttaacttacagctAGACCCTCGGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAACGAGAACATAGCAGCAAATGTGCTAGAAACCATAAGCCCAGCCTTGTTGTATGCTATCCCCAGTGAAATGGCAggtaagtagggagtttactgctgccacacacctctcctggtcatctgtgta Alignment from Spaln_aa2Genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gtcgcaagcactgtttggtgtatgaggacggtttctctcttaacttacagCTAGACCCTCGGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAACGAGAACATAGCAGCAAATGTGCTAGAAACCATAAGCCCAGCCTTGTTGTATGCTATCCCCAGTGAAATGGCAGgtaagtagggagtttactgctgccacacacctctcctggtcatctgtgta Alignment from Spaln_nt2Genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gtcgcaagcactgtttggtgtatgaggacggtttctctcttaacttacagCTAGACCCTCGGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAACGAGAACATAGCAGCAAATGTGCTAGAAACCATAAGCCCAGCCTTGTTGTATGCTATCCCCAGTGAAATGGCAGgtaagtagggagtttactgctgccacacacctctcctggtcatctgtgta Alignment from Pairagon CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gtcgcaagcactgtttggtgtatgaggacggtttctctcttaacttacagCTAGACCCTCGGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAACGAGAACATAGCAGCAAATGTGCTAGAAACCATAAGCCCAGCCTTGTTGTATGCTATCCCCAGTGAAATGGCAGgtaagtagggagtttactgctgccacacacctctcctggtcatctgtgta Alignment from Exonerate_protein2genome CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gtcgcaagcactgtttggtgtatgaggacggtttctctcttaacttacagCTAGACCCTCGGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAACGAGAACATAGCAGCAAATGTGCTAGAAACCATAAGCCCAGCCTTGTTGTATGCTATCCCCAGTGAAATGGCAGgtaagtagggagtttactgctgccacacacctctcctggtcatctgtgta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCAGCCCTTCAGCAGAGCAGTGGAAGACAATGGAATTGCCAGTTAACAAGACTATAGCAGCAAATGTACTAGAGATCATAAGCCCAGCCTTGTTCTACGCCATCCCCAGTGAAATGTCAG gtcgcaagcactgtttggtgtatgaggacggtttctctcttaacttacagCTAGACCCTCGGCAGAACAGTGGAAAACAATGGAGTTGCCAGTGAACGAGAACATAGCAGCAAATGTGCTAGAAACCATAAGCCCAGCCTTGTTGTATGCTATCCCCAGTGAAATGGCAGgtaagtagggagtttactgctgccacacacctctcctggtcatctgtgta #### Tdrd1_ID12221_22 --> 2 - 1 Original Alignment ggCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCTGAGAACGGAATGATCAATATAGCTGAGAATCTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCTAAAAGGAAAAGTGCTTCCACTAAAg cattcagaaagaaggactgcaatcaaaataattcctctttcttcttgcaggaCCAATGGAGTCGAATGGTAGCTGTTCACAGTTAGTCATGGAGCTACTAAGAAATGCCATGCTGAACCACAGTGTGGTTCTCTCTGTGAAGGCCATTTCAAACAATGTACATGCAGTCCTAGTTGAAAGATGTACCGAAAATGGAATGATTAATATAGCAGAGAATCTTGTGATGTGTAGTCTGGCT------CTCACCTCTAAGAGGAAATGGGCTTCCACTAAAggtgaggttcaaggctcttaaagataagacatagaaataagttgtagctct Alignment from CESAR ggCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCTGAGAACGGAATGATCAATATAGCTGAGAATCTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCTAAAAGGAAAAGTGCTTCCACTAAAg cattcagaaagaaggactgcaatcaaaataattcctctttcttcttgcaggaCCAATGGAGTCGAATGGTAGCTGTTCACAGTTAGTCATGGAGCTACTAAGAAATGCCATGCTGAACCACAGTGTGGTTCTCTCTGTGAAGGCCATTTCAAACAATGTACATGCAGTCCTAGTTGAAAGATGTACCGAAAATGGAATGATTAATATAGCAGAGAATCTTGTGATGTGTAGTCTGGCT------CTCACCTCTAAGAGGAAATGGGCTTCCACTAAAggtgaggttcaaggctcttaaagataagacatagaaataagttgtagctct Alignment from Spaln_aa2Genome GGCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCTGAGAACGGAATGATCAATATAGCTGAGAATCTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCTAAAAGGAAAAGTGCTTCCACTAAAG cattcagaaagaaggactgcaatcaaaataattcctctttcttcttgcagGACCAATGGAGTCGAATGGTAGCTGTTCACAGTTAGTCATGGAGCTACTAAGAAATGCCATGCTGAACCACAGTGTGGTTCTCTCTGTGAAGGCCATTTCAAACAATGTACATGCAGTCCTAGTTGAAAGATGTACCGAAAATGGAATGATTAATATAGCAGAGAATCTTGTGATGTGTAGTCTGGCT------CTCACCTCTAAGAGGAAATGGGCTTCCACTAAAGgtgaggttcaaggctcttaaagataagacatagaaataagttgtagctct Alignment from Spaln_nt2Genome GGCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCTGAGAACGGAATGATCAATATAGCTGAGAATCTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCTAAAAGGAAAAGTGCTTCCACTAAAG cattcagaaagaaggactgcaatcaaaataattcctctttcttcttgcagGACCAATGGAGTCGAATGGTAGCTGTTCACAGTTAGTCATGGAGCTACTAAGAAATGCCATGCTGAACCACAGTGTGGTTCTCTCTGTGAAGGCCATTTCAAACAATGTACATGCAGTCCTAGTTGAAAGATGTACCGAAAATGGAATGATTAATATAGCAGAGAATCTTGTGATGTGTAGTCTGGC------TCTCACCTCTAAGAGGAAATGGGCTTCCACTAAAGgtgaggttcaaggctcttaaagataagacatagaaataagttgtagctct Alignment from Pairagon GGCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCTGAGAACGGAATGATCAATATAGCTGAGAATCTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCTAAAAGGAAAAGTGCTTCCACTAAAG cattcagaaagaaggactgcaatcaaaataattcctctttcttcttgcagGACCAATGGAGTCGAATGGTAGCTGTTCACAGTTAGTCATGGAGCTACTAAGAAATGCCATGCTGAACCACAGTGTGGTTCTCTCTGTGAAGGCCATTTCAAACAATGTACATGCAGTCCTAGTTGAAAGATGTACCGAAAATGGAATGATTAATATAGCAGAGAATCTTGTGATGTGTAGTCTGGC------TCTCACCTCTAAGAGGAAATGGGCTTCCACTAAAGgtgaggttcaaggctcttaaagataagacatagaaataagttgtagctct Alignment from Exonerate_protein2genome GGCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCTGAGAACGGAATGATCAATATAGCTGAGAATCTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCTAAAAGGAAAAGTGCTTCCACTAAAG cattcagaaagaaggactgcaatcaaaataattcctctttcttcttgcagGACCAATGGAGTCGAATGGTAGCTGTTCACAGTTAGTCATGGAGCTACTAAGAAATGCCATGCTGAACCACAGTGTGGTTCTCTCTGTGAAGGCCATTTCAAACAATGTACATGCAGTCCTAGTTGAAAGATGTACCGAAAATGGAATGATTAATATAGCAGAGAATCTTGTGATGTGTAGTCTGGCT------CTCACCTCTAAGAGGAAATGGGCTTCCACTAAAGgtgaggttcaaggctcttaaagataagacatagaaataagttgtagctct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCGATGGAGCTGAATGGAAGCTGTTCGCAGTTAGTGATGGAGCTGCTGAGAAATGCCATGCTGAACCAGAGTGTGGTTCTCTCTGTGAAAGCCATTTCAAAGAATGTCCACGCAGTGTCAGTTGAAAAATGTTCTGAGAACGGAATGATCAATATAGCTGAGAATCTGGTGATGTGTGGCCTGGCAGAAAACCTCACTTCTAAAAGGAAAAGTGCTTCCACTAAAG cattcagaaagaaggactgcaatcaaaataattcctctttcttcttgcagGACCAATGGAGTCGAATGGTAGCTGTTCACAGTTAGTCATGGAGCTACTAAGAAATGCCATGCTGAACCACAGTGTGGTTCTCTCTGTGAAGGCCATTTCAAACAATGTACATGCAGTCCTAGTTGAAAGATGTACCGAAAATGGAATGATTAATATAGCAGAGAATCTTGTGATGTGTAGTCTGGCT------CTCACCTCTAAGAGGAAATGGGCTTCCACTAAAGgtgaggttcaaggctcttaaagataagacatagaaataagttgtagctct #### Tectb_ID11558_2 --> 2 - 0 Original Alignment atGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagatGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga Alignment from CESAR atGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagatGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga Alignment from Spaln_aa2Genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga Alignment from Spaln_nt2Genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga Alignment from Pairagon ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga Alignment from Exonerate_protein2genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga Alignment from Exonerate_coding2genome ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga Alignment from GeneWise ATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGGATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAGTTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAG cacagcaacagcatcaagcaaacctaaaagtggcgtctttgtcttcacagATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACCAAAATCCCTGAGTGTCCCTATGGATGGGAGGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAATGGGGTCCATGAAGGTGGCTATTACCAGTTCGTCATCCCTGATCTGTCACTCAAGAACAAGTCCTACTGTGGAACTCAGTCAGAGgtaagtttatgccctgtagttgctggagacatgttcaaggcacatagaga #### Tectb_ID11562_5 --> 0 - 2 Original Alignment AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCcggtacttactgtatgagtagccttatgacatattttagacaccaccattgt Alignment from CESAR AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTcg aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCcggtacttactgtatgagtagccttatgacatattttagacaccaccattgt Alignment from Spaln_aa2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCCGgtacttactgtatgagtagccttatgacatattttagacaccaccattgt Alignment from Spaln_nt2Genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCCGgtacttactgtatgagtagccttatgacatattttagacaccaccattgt Alignment from Pairagon AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCCGgtacttactgtatgagtagccttatgacatattttagacaccaccattgt Alignment from Exonerate_protein2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCCGgtacttactgtatgagtagccttatgacatattttagacaccaccattgt Alignment from Exonerate_coding2genome AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCCGgtacttactgtatgagtagccttatgacatattttagacaccaccattgt Alignment from GeneWise AATGCCAAGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGGAGTAGAAGCCAAAGGCCTAAGCGTTCG aatttgaaatgttacaaataagtctctacgtgataatccttctgttctagAACGCCAAGTTCTCCACTAAGAAAGAAGCTCCCTTTGTACTGGAAACAGCTGAAATTGGCTCAGATTTATTTGCAGGCGTAGAGGCTAAGGGCCTTAGCAGCCGgtacttactgtatgagtagccttatgacatattttagacaccaccattgt #### Tex40_ID1870_2 --> 0 - 1 Original Alignment CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAg ctctgctatacctgaatgtccttactgcatttgtttattctcaattttagCCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAggtgagaatagctatccctaggcaatgagcataccaggtataggttgctat Alignment from CESAR CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAg ctctgctatacctgaatgtccttactgcatttgtttattctcaattttagCCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAggtgagaatagctatccctaggcaatgagcataccaggtataggttgctat Alignment from Spaln_aa2Genome CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG ctctgctatacctgaatgtccttactgcatttgtttattctcaattttagCCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAGgtgagaatagctatccctaggcaatgagcataccaggtataggttgctat Alignment from Spaln_nt2Genome CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG ctctgctatacctgaatgtccttactgcatttgtttattctcaattttagCCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAGgtgagaatagctatccctaggcaatgagcataccaggtataggttgctat Alignment from Pairagon CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG ctctgctatacctgaatgtccttactgcatttgtttattctcaattttagCCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAGgtgagaatagctatccctaggcaatgagcataccaggtataggttgctat Alignment from Exonerate_protein2genome CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG ctctgctatacctgaatgtccttactgcatttgtttattctcaattttagCCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAGgtgagaatagctatccctaggcaatgagcataccaggtataggttgctat Alignment from Exonerate_coding2genome CCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG ctctgctatacctgaatgtccttactgcatttgtttattctcaattttagCCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAGgtgagaatagctatccctaggcaatgagcataccaggtataggttgctat Alignment from GeneWise GAGGAAAGCGTCAAACCGGTGCCCAAACACGCAAACCATCGCCGCAGCTCGGTCAGATCCAGCCTGTACGGAGATGTTCGTGACCTATGGAGCACGGCCACGATGTCCACAGCGAATGTGTCGGTATCCGACGTCTGCGAGGACTTCGACGAAGAGGGCAAATCTGTAAGAAACAGGATTCGCAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTCGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAACTGTGCCATGGCAGGTCCTTGGAGCATGGGGAGGACCACGAAGAATCTGAGACCTCCTTAG ctctgctatacctgaatgtccttactgcatttgtttattctcaattttag---------------CCTGTGCCTAAACATGCAAACCATCGCCATAGCTCAGTCAGATCAAGCCTGTATGGACATGTCCGTGACCTGTGGAGCACAGCCACAATGTCCACAGCGAATGTGTCGGTATCCGATGTCTGTGAGGACTTCGATGAAGAGGGCAAATCTGTAAGAAACAGGATTCACAAGTACAGCCAGACCATTTCTATTAGGGACAGCCTCAACCTTGAGCCAGAGGAGATCCAGCAGCAAGCACGTCGAGAGCTTGAGCTGTGTCATGGCAGGTCCCTGGAGCATGGAGAGGACCATGAAGAATCCGAGACCTCCTTAGgtgagaatagctatccctaggcaatgagcataccaggtataggttgctat #### Tjp2_ID5264_22 --> 0 - 2 Original Alignment ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGaggtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc Alignment from CESAR ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGag ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGaggtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc Alignment from Spaln_aa2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc Alignment from Spaln_nt2Genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc Alignment from Pairagon ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc Alignment from Exonerate_protein2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc Alignment from Exonerate_coding2genome ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc Alignment from GeneWise ATCGAAATAGCTCAGAAGCACCCTGACATCTATGCGGTTCCAATCAAGGCCCCCAAGCCAGATGCTGGCCTCCCCCCGCACATGAG ttgcctcagcattgccctaaatttctaaaactctttattcttctttgtagATTGAAATAGCTCAGAAGCACCCTGACATATGTGCAGTCCCAATCAAGTCCCCCAAGCCAGATGCAGGCCTTCCCCCACACATGAGgtttgtgttgtttggctaccagccaatgcatttggaaccagtggagtacc #### Tjp2_ID5270_17 --> 0 - 1 Original Alignment GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAggtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat Alignment from CESAR GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAg ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAggtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat Alignment from Spaln_aa2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat Alignment from Spaln_nt2Genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat Alignment from Pairagon GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat Alignment from Exonerate_protein2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat Alignment from Exonerate_coding2genome GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat Alignment from GeneWise GACAAGCACGCCCTGCTCGACGTTACCCCCAAAGCTGTGGACCTGCTCAACTACACTCAGTGGTTCCCTATCGTGATTTTCTTCAACCCGGATTCCAGACAAGGTGTTAAAACCATAAGGCAGAGGTTGAGTCCAACATCCAATAAAAGTTCTCGCAAGTTATTTGATCAAGCCAACAAGCTCAAAAAGACCTGTTCTCATCTTTTTACAG ccagcccctctgatttgtgacattaacatgcagtctgtccttgcctccagGACAAGCATGCCCTGCTTGGTGTTACCCCCAAAGCAGCGGACCTGCTCAACTACACTCAGTGGTTTCCTATTGTCATTTTCTTCAATCCAGACACCAGACACGGGGTTAAAACAATAAGGCAACGCCTGAGCCCAACGTCAAACAAGAGTTCTCGGAAATTATTTGATCAAGCTAACAAGCTTAAGAAGACCTGTTCTCATCTTTTTACAGgtgagtgaaaccttgaataagccctatgcccaccttgaaccatgagaaat #### Tjp2_ID5277_10 --> 2 - 2 Original Alignment ttCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATgg gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagttCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATgggtagagagcctacctttgtgactttgttgcctctccagccatccccaata Alignment from CESAR ttCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATgg gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagttCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATgggtagagagcctacctttgtgactttgttgcctctccagccatccccaata Alignment from Spaln_aa2Genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagTTCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtagagagcctacctttgtgactttgttgcctctccagccatccccaata Alignment from Spaln_nt2Genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagTTCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtagagagcctacctttgtgactttgttgcctctccagccatccccaata Alignment from Pairagon TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagTTCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtagagagcctacctttgtgactttgttgcctctccagccatccccaata Alignment from Exonerate_protein2genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagTTCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtagagagcctacctttgtgactttgttgcctctccagccatccccaata Alignment from Exonerate_coding2genome TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagTTCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtagagagcctacctttgtgactttgttgcctctccagccatccccaata Alignment from GeneWise TTCCTCAACCCAGAACAGCTCCAAGAGTTTTTCTTCGTCCTAGTCCCGAAGATGAAGCAATATATGG gcatacacatgggttgaacatggttgcaacacttttctctttgaaaacagTTCCTCAACCCAGGACAGCACCTAGAGTTTTTCTTCGTCCTAGTCCTGAGGATGAAGCCATTTATGGgtagagagcctacctttgtgactttgttgcctctccagccatccccaata #### Tjp2_ID5278_9 --> 1 - 1 Original Alignment cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg gattaagattttgttattccgtaaaccatgtactttattttacccttcagcTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAggtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta Alignment from CESAR cTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAg gattaagattttgttattccgtaaaccatgtactttattttacccttcagcTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAggtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta Alignment from Spaln_aa2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccgtaaaccatgtactttattttacccttcagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta Alignment from Spaln_nt2Genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccgtaaaccatgtactttattttacccttcagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTA---TGGCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta Alignment from Pairagon CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccgtaaaccatgtactttattttacccttcagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTAT---GGCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta Alignment from Exonerate_protein2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccgtaaaccatgtactttattttacccttcagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta Alignment from Exonerate_coding2genome CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccgtaaaccatgtactttattttacccttcagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta Alignment from GeneWise CTCAAGAGAGGAGACCTCAGGCAGACTATCCAGGATGGGTGCCACTCCCACGCCGTTCAAGTCCACGGGGGACATCACAGCTGCGGGGGTCACAGAGGCCAGCAGGGAGCCCAGGTACCAGGAAGAAGGCCCAG gattaagattttgttattccgtaaaccatgtactttattttacccttcagCTCTAAAGAAGAGACCTCGGGCAGACTATCAAGGATGGGTGCCATGCCCACACCATTCAAGTATACAGGTGACCTCACAGCTGCTGGAGTTATG---GCCAGTAAAGAGCCCAGGTACCAGGAAAAAGGCCCAGgtaaagtgttatgctattcttttccatgtatcttaaacacaggctggcta #### Tjp2_ID5279_8 --> 2 - 2 Original Alignment atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagatATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAaggtgagtttgggtttggatgattaagattttgttattccgtaaaccattaa Alignment from CESAR atATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGag ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagatATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAaggtgagtttgggtttggatgattaagattttgttattccgtaaaccatgta Alignment from Spaln_aa2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAAGgtgagtttgggtttggatgattaagattttgttattccgtaaaccattaa Alignment from Spaln_nt2Genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAAGgtgagtttgggtttggatgattaagattttgttattccgtaaaccattaa Alignment from Pairagon ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAAGgtgagtttgggtttggatgattaagattttgttattccgtaaaccattaa Alignment from Exonerate_protein2genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAAGgtgagtttgggtttggatgattaagattttgttattccgtaaaccattaa Alignment from Exonerate_coding2genome ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAAGgtgagtttgggtttggatgattaagattttgttattccgtaaaccattaa Alignment from GeneWise ATATCTCGGAAATAGAGTCCAACCGGTCTTTCTCTCCAGAGGAGAGACGCCAGCAGTATTCTGATCAGGATTACCATTCCTCCACTGAGAAGCTGAAGGAGAGGCCGAG ttgttctgatatatttcaccaaaccagagggcatcctttgtcatccacagATATTTCAGAAATAGAGTCCAATCGGTCTTTTTCTCCAGAGGAGAGGCGCCAGCAGTATTCTGGTCAAGATTACCACCCTTCTACTGAGAAGCTGAAGAAGAGGCCAAGgtgagtttgggtttggatgattaagattttgttattccgtaaaccattaa #### Tjp2_ID5283_4 --> 1 - 0 Original Alignment aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagaGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc Alignment from CESAR aGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagaGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc Alignment from Spaln_aa2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagAGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc Alignment from Spaln_nt2Genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagAGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc Alignment from Pairagon AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagAGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc Alignment from Exonerate_protein2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagAGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc Alignment from Exonerate_coding2genome AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagAGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc Alignment from GeneWise AGAAAATGACAGGGTGGTCATGGTCAATGGCACCCCCATGGAAGATGTGCTCCATTCGTTTGCCGTTCAGCAGCTTAGGAAAAGTGGGAAGATAGCAGCCATC atttgcagccctcattgccgccttagagacccgcatttgcctttgcctagAGAGAATGACAGAGTGGTCATGGTCAATGGTAGTCCCATGGAAGATTTGCTGCATTCGTTTGCTGTTCAGCAGCTTAGGAAGAGTGGGAAGATAGCTGCCATTgtaagtctaggtcaatattacaattgggtgagctgaatgtgcttatattc #### Tle4_ID3621_16 --> 0 - 2 Original Alignment AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACATC------TGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGA------GGTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTaggtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct Alignment from CESAR AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCC---------CCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGag ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACATC------TGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGA------GGTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTaggtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct Alignment from Spaln_aa2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACATC------TGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGA------GGTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTAGgtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct Alignment from Spaln_nt2Genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCCCCT---------GCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACAT------CTGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGAG------GTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTAGgtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct Alignment from Pairagon AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCC---------CCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACAT------CTGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGAG------GTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTAGgtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct Alignment from Exonerate_protein2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACATC------TGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGA------GGTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTAGgtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct Alignment from Exonerate_coding2genome AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCA---------GCCCCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACATC------TGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGA------GGTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTAGgtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct Alignment from GeneWise AACAGGGATAACTACATCCGTTCCTGCAGATTGCTCCCTGATGGTCGCACCTTAATTGTTGGAGGGGAAGCCAGCACACTGTCCATCTGGGACCTGGCAGCTCCAACTCCACGCATCAAGGCAGAGCTGACATCCTCAGCC---------CCTGCCTGCTATGCTCTGGCCATCAGCCCCGACTCCAAGGTCTGCTTCTCATGCTGCAGCGACGGTAACATCGCAGTGTGGGATCTGCACAACCAGACTCTGGTGAG ctgattcattactgttctgaacaggcttagccttgtcaccttgtcaccagAATCGGGATAATTACATC------TGCAGGTTACTCCCTGATGGACGAACCCTAGTTGTTGGGGGA------GGTACACTTTCAACCTGGGACCTGGCTGCACCACCTTCACGTATCAAGGCGGAACTGACATCCTCAGCCCCAGCTGCACCTGCATGCTATGCCCTGGCTATCACCCCTCATTCTAAGGTCTGCTTTTCATGCTGCAGTGATGGCAATATTGTGGTGTGGGACCTGCACAACCAGACACTTGTTAGgtaaactagctgaatatacttctttctggaaaagtagtatcaaaaaagct #### Tle4_ID3623_15 --> 1 - 0 Original Alignment aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagaGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta Alignment from CESAR aGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagaGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta Alignment from Spaln_aa2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagAGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta Alignment from Spaln_nt2Genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagAGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta Alignment from Pairagon AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagAGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta Alignment from Exonerate_protein2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagAGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta Alignment from Exonerate_coding2genome AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagAGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta Alignment from GeneWise AGCATACTCCTTTCACGTCAGTGCCGATGGCCAGATGCAGCCTGTCCCTTTCCCCCCTGATGCCCTCATTGGACCAGGGATCCCCCGACACGCTCGACAGATCAACACCCTCAACCATGGGGAGGTGGTGTGTGCAGTGACCATCAGCAACCCCACAAGGCACGTGTACACAGGTGGCAAGGGCTGTGTTAAGGTCTGGGACATCAGCCACCCTGGCAACAAGAGCCCAGTCTCTCAGCTGGACTGTCTG tattcattgccaccttctgttatacgctccaatgtctccatctctttcagAGCATACTCCTTTCACGTGAGTGCTGATGGCCAGATGCAGCAGGTCCCTTTTCCCCCTGATGCCCTCATTGGTCCTGGAATACCTCGACATGCGCGGCTGATAAACACCCTCAACCATGGGGAAGTAGTGTGTGCAGTGGCCATAAGCAACCCAACAAGGCATGTATACACTGGTGGTAAAGGTTGTGTTAAGGTCTGGGATATCAGTTACCCTGGCAACAAAGGCCCTTTGTCTCAGCTAGCCTGTTTGgtcagtcaacagagaaatatacctcacagtggtaaagattagcattatta #### Tle4_ID3629_10 --> 0 - 0 Original Alignment GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg Alignment from CESAR GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg Alignment from Spaln_aa2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg Alignment from Spaln_nt2Genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg Alignment from Pairagon GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg Alignment from Exonerate_protein2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg Alignment from Exonerate_coding2genome GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg Alignment from GeneWise GACAGTGATGGTGAGAAGAGTGATGACAACTTGGTAGTTGATGTGTCCAATGAG cagtatctgataatgcaccctcctgctaaatgtttctaaatactttctagGACAGTGATGGTGAGAAGACTGATGATAACCTGGTAGTTGAGGTCTCTAATGAGgtgggatttttacaagttgttacttagttgggtggctgcggtatgaattg #### Tle4_ID3684_4 --> 0 - 0 Original Alignment TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa Alignment from CESAR TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa Alignment from Spaln_aa2Genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa Alignment from Spaln_nt2Genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa Alignment from Pairagon TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa Alignment from Exonerate_protein2genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa Alignment from Exonerate_coding2genome TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa Alignment from GeneWise TATTATGAAATGTCCTATGGGTTGAACATAGAAATGCACAAGCAG cctagatcctccaagaaatacaagctaactgccctcttgttctcttgtagTATTATGAAATGTCCTATGGTTTAAACATAGAAATGCATAAGCAGgtactttcattgtaggagttccacatgataatcagactgctgcacttcaa #### Tle4_ID3688_3 --> 1 - 0 Original Alignment tCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagtCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct Alignment from CESAR tCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagtCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct Alignment from Spaln_aa2Genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct Alignment from Spaln_nt2Genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct Alignment from Pairagon TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct Alignment from Exonerate_protein2genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct Alignment from Exonerate_coding2genome TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct Alignment from GeneWise TCTGAAGCTGGAATGTGAGAAGCTCGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATG ttattgcctacactttattacactttactgctgttctttctcttctatagTCTGAAGTTGGAATGTGAGAAGCTTGCCAGCGAGAAGACAGAGATGCAGCGGCATTATGTCATGgttagtaaagctctgtgattggataaaggtgctcactaacttcagatgct #### Tll2_ID8099_20 --> 2 - 0 Original Alignment agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagagTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct Alignment from CESAR agTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagagTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct Alignment from Spaln_aa2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct Alignment from Spaln_nt2Genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct Alignment from Pairagon AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct Alignment from Exonerate_protein2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct Alignment from Exonerate_coding2genome AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct Alignment from GeneWise AGTGTGGGGGCAGGCTGAAGGCTGAAGTACAGACCAAAGAGCTCTATTCCCATGCCCAGTTTGGGGACAACAACTACCCGAGCCAGGCCCGCTGTGACTGGGTGATAGTGGCAGAAGACGGTTATGGCGTGGAGCTGATATTCCGGACCTTTGAAGTTGAGGAGGAAGCTGACTGTGGCTACGACTTCATGGAGGCTTATGATGGGTACGACAGCTCGGCACCCAGGCTCGGCCGCTTCTGTGGCTCAGGG actttggctgtgcaggaatagtatgacccctgcgtggggttttctttcagAGTGTGGAGGCAGGCTGAAAGCTGAAGTGCAGACCAAAGACCTCTATTCTCATGCGCAGTTTGGAGACAACAACTACCCAAGCCATGCCCGATGTGACTGGGTGGTAGTGGCAGAAGATGGTTATGGTGTTAAGTTAATATTCCGAACATTCGAAGTTGAGGAGGAGGCTGATTGTGGCTATGACTTCATGGAAGCTTATGATGGCTATGTCAGCTCAGCACCAAGGCTTGGCCGCTTCTGTGGCTCAGGGgtgagtctgtaaaatgtcatgtccttgccagcttagattgcagttcatct #### Tll2_ID8100_19 --> 0 - 1 Original Alignment ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAg tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAggtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg Alignment from CESAR ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAg tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAggtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg Alignment from Spaln_aa2Genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg Alignment from Spaln_nt2Genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg Alignment from Pairagon ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg Alignment from Exonerate_protein2genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg Alignment from Exonerate_coding2genome ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg Alignment from GeneWise ACATTCAGTGAGTTCGAGATTGAGCAGCACCAGGAATGTGCCTATGACCACCTGGAACTGTACGATGGGACAGACAGCTTGGCCCCCATCCTTGGCCGCTTCTGCGGCAGCAAGAAGCCGGATCCCGTGGTGGCGACAGGCAGCAGCCTATTCCTCAGGTTTTACTCGGACGCCTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAG tgtccagttcatgtcttcctgggcaatccctgtgttgtcccggcttctagACATTCAGTGAGTTTGAGATTGAACAGCACCAGGAATGTGCTTATGAGCATCTGGAGCTGTATGATGGGACAGACAGTTTGGCCCCCATTCTTGGTCACTTCTGTGGCAGCAAGAAACTGGATCCTGCAGTGGCAACGGGCAGCAGCCTATTCCTCACGTTCTATTCAGATGCTTCAGTGCAGCGGAAAGGCTTCCAGGCTGTGCACAGCACAGgtaacaaacctaatagctaacgtggggccatgcttcaggcctttttggtg #### Tll2_ID8101_18 --> 2 - 0 Original Alignment ctGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagctGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc Alignment from CESAR ctGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagctGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc Alignment from Spaln_aa2Genome CTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagCTGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc Alignment from Spaln_nt2Genome CTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagCTGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc Alignment from Pairagon CTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagCTGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc Alignment from Exonerate_protein2genome CTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagCTGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc Alignment from Exonerate_coding2genome CTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagCTGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc Alignment from GeneWise CTGGCTGCGCCTACAAGATCAGCAGTGCAGAGGGGACCCTGATGAGTCCTAACTGGCCAGACAAATACCCCAGCCGGAAGGAATGTACCTGGAACATTTCATCAACCGCAGGCCACAGGGTGAAAATT atatccagacaagatttcccctactgagagccagtcttcctctgttgcagCTGGTTGTGCTTACAAGTCCAGTAGTGCAGAGGGGACTCAGATGAGTCCTAACTGGCCAGACAAATATCCTAGCCGTAAAGAATGTACCTGGAACATCTCATTGACTGCTGGCCACAGGGTGAAAATTgtgagacgaatccccacataatacacttcttcagactgcatcttggcatc #### Tll2_ID8103_16 --> 0 - 1 Original Alignment GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAg aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAA------GAAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAggtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt Alignment from CESAR GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAg aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAA------GAAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAggtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt Alignment from Spaln_aa2Genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAA------GAAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAGgtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt Alignment from Spaln_nt2Genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAAG------AAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAGgtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt Alignment from Pairagon GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAAG------AAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAGgtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt Alignment from Exonerate_protein2genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAA------GAAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAGgtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt Alignment from Exonerate_coding2genome GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAA------GAAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAGgtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt Alignment from GeneWise GTCTGTAAGTATGACTTCGTAGAGGTGCGCAGTGGCCTGTCCCCAGATGCCAAGCTTCACGGCAAATTCTGTGGCTCCGAGACCCCGGAGGTCATCACATCGCAGAGCAACAACATGCGAGTGGAATTCAAGTCTGACAACACCGTCTCCAAGCGAGGCTTCAGGGCTCACTTCTTCTCAG aagtaataattagatgggtgcatattgctgtcttccccttgccaccacagGTCTGTAAATATGACTGTGTAGAA------GAAGGCCTCTCCCCAGATGCTAAGCTTCATGGCAAGTTCTGTGGCTCAGAAACACCAGAGGTTATCACATCGCAGAGTAACAATATGAGAGTAGAATTCAAGTCAGACAACACTGTCTCTGAGCGAGGTTTCAGTGCTCACTTCTTCTCAGgtaagtggggttagcctggagcaagtcttagggcgaagggagcagagagt #### Tll2_ID8111_10 --> 0 - 1 Original Alignment ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGggtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc Alignment from CESAR ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGg gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGggtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc Alignment from Spaln_aa2Genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGGgtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc Alignment from Spaln_nt2Genome ATCATCCTAAATTTCACCTCCATGGATTTGT---TTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGGgtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc Alignment from Pairagon ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGGgtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc Alignment from Exonerate_protein2genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGGgtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc Alignment from Exonerate_coding2genome ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGGgtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc Alignment from GeneWise ATCATCCTAAATTTCACCTCCATGGATTTG---TTTAAGAGCCGCCTGTGCTGGTACGATTACGTGGAGATCCGGGATGGTTACTGGAGAAAGGCCCCCCTGTTGG gaaagcttacatataggctagcctccattgtctttctctgtgatcaatagATCATCCTAAATTTCACCTCTATGGATCTGTCATTTAAGAGCCGTCTGTGCTGGTATGATTATGTGGAAATACGGGATGGTTACTGGAGGAAGGCTTCACTGTTGGgtgagggtacttaagccctcacagccttgatggctaatgtgtgttccacc #### Tll2_ID8121_5 --> 2 - 2 Original Alignment gtACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTgg acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcaggtACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTgggtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa Alignment from CESAR gtACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTgg acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcaggtACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTgggtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa Alignment from Spaln_aa2Genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcagGTACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTGGgtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa Alignment from Spaln_nt2Genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcagGTACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTGGgtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa Alignment from Pairagon GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcagGTACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTGGgtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa Alignment from Exonerate_protein2genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcagGTACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTGGgtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa Alignment from Exonerate_coding2genome GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcagGTACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTGGgtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa Alignment from GeneWise GTACCCAGAGGGCCATTTTCAAACAGGCCATGAGGCACTGGGAGAAGCACACCTGTGTGACCTTCGTAGAGAGGACAGATGAGGAAAGCTTCATTGTATTCAGTTACAGGACCTGTGG acatacagaaaatgagtccagaattgttgtgctttctcctgtttccgcagGTACACAAAGGGCCATTTTCAAGCAGGCCATGAGGCACTGGGAGGAGCACACCTGTGTGACCTTTGTTGAGAGAACACACGAACAAAGTTTTACTGTATTCAGCTACAGGACCTGTGGgtaagcagggcagtagcacagtaggactgtttctgcatggtatgagcgaa #### Tll2_ID8125_3 --> 2 - 1 Original Alignment gaGGCCTTGAGGAGACATCTGCAAGGTGGCCAAAC---GATACAGCCTCT---AACGCCAGCATCCAGGCACCAAGAAAGg ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcaggtGGACTTAAGGAGACACCAGCAAGGTGGCTCAATGACAATACAGCCTCAACATATGCAAGCATCAAGGCTCCACGAAAGggtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt Alignment from CESAR gaGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGAT---ACAGCCTCTAAC---GCCAGCATCCAGGCACCAAGAAAGg ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcaggtGGACTTAAGGAGACACCAGCAAGGTGGCTCAATGACAATACAGCCTCAACATATGCAAGCATCAAGGCTCCACGAAAGggtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt Alignment from Spaln_aa2Genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGATACAGCCTCTAAC------GCCAGCATCCAGGCACCAAGAAAGG ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcagGTGGACTTAAGGAGACACCAGCAAGGTGGCTCAATGACAATACAGCCTCAACATATGCAAGCATCAAGGCTCCACGAAAGGgtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt Alignment from Spaln_nt2Genome GAGGCCTTGAGGAGACATCTGCAAGGTGGC-CAA--ACGATACAGCCTCTA---ACGCCAGCATCCAGGCACCAAGAAAGG ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcagGTGGACTTAAGGAGACACCAGCAAGGTGGCTCAATGACAATACAGCCTCAACATATGCAAGCATCAAGGCTCCACGAAAGGgtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt Alignment from Pairagon GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACG---ATACAGCCTCTA---ACGCCAGCATCCAGGCACCAAGAAAGG ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcagGTGGACTTAAGGAGACACCAGCAAGGTGGCTCAATGACAATACAGCCTCAACATATGCAAGCATCAAGGCTCCACGAAAGGgtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt Alignment from Exonerate_protein2genome GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGAT---ACAGCCTCTAAC---GCCAGCATCCAGGCACCAAGAAAGG ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcagGTGGACTTAAGGAGACACCAGCAAGGTGGCTCAATGACAATACAGCCTCAACATATGCAAGCATCAAGGCTCCACGAAAGGgtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt Alignment from Exonerate_coding2genome ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcaggtggacttaaggagacaccagcaaggtggctcaatgacaatacagcctcaacatatgcaagcatcaaggctccacgaaagggtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt Alignment from GeneWise GAGGCCTTGAGGAGACATCTGCAAGGTGGCCAAACGAT---ACAGCCTCTAAC---GCCAGCATCCAGGCACCAAGAAAGG ccacacccaccttgctcctaaaggtatcacgttcttttcctcccctgcagGTGGACTTAAGGAGACACCAGCAAGGTGGCTCAATGACAATACAGCCTCAACATATGCAAGCATCAAGGCTCCACGAAAGGgtatgttacgtgagggcaaagccagactttcttcgtcccctatatccctt #### Tlx1_ID9330_2 --> 2 - 2 Original Alignment gtCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGag gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagggCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGC---ACATTCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGaggtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt Alignment from CESAR gtCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGag gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagggCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGCACA---TTCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGaggtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt Alignment from Spaln_aa2Genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagGGCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGCACA---TTCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGAGgtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt Alignment from Spaln_nt2Genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagGGCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGCACA---TTCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGAGgtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt Alignment from Pairagon GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagGGCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGCACAT---TCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGAGgtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt Alignment from Exonerate_protein2genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagGGCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGCACA---TTCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGAGgtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt Alignment from Exonerate_coding2genome GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagGGCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGCACA---TTCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGAGgtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt Alignment from GeneWise GTCACCCCTATCAGAACCGGACGCCCCCTAAGAAGAAGAAGCCGCGCACATCCTTCACGCGCCTGCAGATCTGTGAGCTGGAAAAGCGCTTCCACCGCCAGAAGTACTTGGCTTCGGCGGAGCGCGCTGCTCTGGCCAAGGCGCTCAAAATGACCGATGCGCAAGTAAAAACCTGGTTCCAGAACCGGAGGACGAAATGGAG gtctgtgactctagatgccttctcatcgttctatcaattttgcatcttagGGCACCCCTATCAGAACCGGACACCCCCTAAGAAGAAAAAGCCACGCACA---TTCACATGCTCTCAGATCTGTGAGCTGGAAAAGCAATTCCACCACCAGGAGTACTTGGCTTCAGCAGAGCGCGCTGCCCTCACCAAGGCACTTCAGATGACTGATGCACAAGTAAAAACCTGGTTCCAGAACCGAAGGACGAAGTGGAGgtgagctcatgagccaggtctaaggatgagcagggggcccctctctctgt #### Tm7sf2_ID1414_6 --> 0 - 0 Original Alignment GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATT---------CTGCTGATGCAGGAG---GAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGGT---GCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaag Alignment from CESAR GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATT---------CTGCTGATGCAGGAG---GAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGGT---GCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaaa Alignment from Spaln_aa2Genome GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATT---------CTGCTGATGCAGGAG---GAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGGT---GCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaag Alignment from Spaln_nt2Genome GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATT---------CTGCTGATGCAGGAG---GAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGG---TGCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaag Alignment from Pairagon GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATT---------CTGCTGATGCAGGAG---GAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGG---TGCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaag Alignment from Exonerate_protein2genome CTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATTCTGCTGATGCAGGAGGAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGGT---GCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaag Alignment from Exonerate_coding2genome CTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATTCTGCTGATGCAGGAGGAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGGT---GCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaag Alignment from GeneWise GTTTTCATTAACCTGGCCCTGCTGATGCAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAG accacagaaaatgacttaccagaaaatgatttataattcttctcttttagGTTTTCATT---------CTGCTGATGCAGGAG---GAGCTGCGGGGGAGTCCTTCCCTGGCCATGTGGCTGGTAAATGGCTTCCAGCTGTTGTATATAGGT---GCCCTCTGGTATGAAgtatgtcgcctaaggaggcaatgtgatgacatcaactgtactatctcaag #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATggtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATggtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Pairagon ------------------------------------------------AGGTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG TATGCTGTGATATGATCCATGTCCTGTGACTTGTAATTATTTATGACTAGGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from GeneWise ---GCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgaagtaatgtgttgaacgagccagattatagcctcttccctgcttccagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCTGCTCACTCAGGGCCAGCACGACTACTGGCCCTACCAGCTTATCTACCTGGCCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTCCTGTTCATCTGGCTTGGTCTGCAGGTGGCGCTCTATTTGCTGCCTGCATGCAGGgtgagagatctctcgcatcataggggacatatgctgtgatatgatccatg #### Tm9sf3_ID8140_10 --> 0 - 2 Original Alignment GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAAtg tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAAtggtatgaagagactttgtcctaagctatattgaatatggattagttctccg Alignment from CESAR GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAAtg tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAAtggtatgaagagactttgtcctaagctatattgaatatggattagttctccg Alignment from Spaln_aa2Genome GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAATG tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAATGgtatgaagagactttgtcctaagctatattgaatatggattagttctccg Alignment from Spaln_nt2Genome GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAATG tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAATGgtatgaagagactttgtcctaagctatattgaatatggattagttctccg Alignment from Pairagon GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAATG tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAATGgtatgaagagactttgtcctaagctatattgaatatggattagttctccg Alignment from Exonerate_protein2genome GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAATG tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAATGgtatgaagagactttgtcctaagctatattgaatatggattagttctccg Alignment from Exonerate_coding2genome GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAATG tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAATGgtatgaagagactttgtcctaagctatattgaatatggattagttctccg Alignment from GeneWise GTGGCCGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTCGTTGGTACAATACTGGGTCGAAATCTGTCGGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCCGTGCCTCGTCCCATCCCGGAGAAAAAATG tgcttcagtttcctatatataaaaggtgggcagggctctggtttttgtagGTGGCTGTTTGTTGCATCTGTTTCTTTGTTATCCTTCCTCTAAATCTTGTTGGTACAATCCTGGGTCGAAATCTGTTAGGTCAGCCCAACTTCCCTTGTCGTGTCAATGCTGTGCCTCGTCCCATCCCAGAGAAAAAATGgtatgaagagactttgtcctaagctatattgaatatggattagttctccg #### Tm9sf3_ID8142_8 --> 1 - 1 Original Alignment gAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAg ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttaggAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTggtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc Alignment from CESAR gAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAg ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttaggAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTggtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc Alignment from Spaln_aa2Genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttagGAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTGgtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc Alignment from Spaln_nt2Genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttagGAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTGgtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc Alignment from Pairagon GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttagGAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTGgtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc Alignment from Exonerate_protein2genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttagGAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTGgtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc Alignment from Exonerate_coding2genome GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttagGAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTGgtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc Alignment from GeneWise GAGGGGGTCAATGCTCAGCACAGCCATATTTGTCTATGCTGCTACATCGCCAGTGAACGGGTACTTTGGAGGAAGTCTGTATGCTAGACAAGGAG ctggtcactaggtgcctggtttgagacatcctcctgccttcttttgttagGAGGGGGTCGATGCTCAGTACAGCCATATTCATCTACGCTGCCACAGCACCTGTGAATGGGTACTTTGGGGGAAGTCTGTATGCTAGACAAGGTGgtactcagtatagacaaagcaattttgcatctgtacatgcgtgtaggtgc #### Tm9sf3_ID8148_2 --> 0 - 1 Original Alignment TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg Alignment from CESAR TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAg gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAggtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg Alignment from Spaln_aa2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg Alignment from Spaln_nt2Genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg Alignment from Pairagon TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGA---AGATTTTAGTGGCCTAGACATAAAATTTAAAGgtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg Alignment from Exonerate_protein2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg Alignment from Exonerate_coding2genome TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg Alignment from GeneWise TATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGGCCCTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTCTGTGTGGGGTCAAAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTAGAATTTAGTGGCCTGGACATTAAATTTAAAG gatgtagacatattaacttgaaattacagacacctccattgtctccgtagTATCAAGATAAAGAAAAAGTTGTTCTATGGATGAATACTGTTGGGCCCTATCACAATCGCCAAGAGACACATAAATACTTTTCACTTTTATTCTGTGTGGGCTCAAAGAAAAGTATTAGTCATTACCATGAAACTTTGGGAGATGCACTTCAACGAGTAGAA---GATTTTAGTGGCCTAGACATAAAATTTAAAGgtatgtgcacattagtaatgcccatacatgttgaggtttgtgagtttctg #### Tmc1_ID4830_13 --> 0 - 0 Original Alignment ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAA------GCCAACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTT---TTTCATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat Alignment from CESAR ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAAC------ATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat Alignment from Spaln_aa2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCC------AACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat Alignment from Spaln_nt2Genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAACA------TGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTTTT---TCATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat Alignment from Pairagon ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCC------AACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTTT---TTCATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat Alignment from Exonerate_protein2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCC------AACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat Alignment from Exonerate_coding2genome ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCC------AACATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat Alignment from GeneWise ATTGAAGAGGAGAAGCTTGTGAAGGCCAATATTACCCTGTGGGAAGCCAAC------ATGATTAAGGCTTACAATGAATCTCTCTCTGGGCTCTCTGGGAACACCACAGGAGCACCCTTTTTCGTTCATCCTGCAGATGTCCCTCGCGGTCCCTGCTGGGAAACAATGGTGGGGCAG ttttggtgatctatgatagccatttctagtgtctcgtttgcctccctaagATTGAAGATGAGAAACTTGTCAAGGCCAACATTACCTTGTGGGATGCCAACACTAACATGATTAAAGCTTATAATGAATCTCTGTCTGGGCTCTCTGGAAACCCCATGGGAGCACCCTTTTTT---CATCCTGTAGATGTACCTCGTGGTCCTTGTTGGGAAATCATGGTGGGCCAGgtagatgtatagagaggagtacctatcccaatgggctgtctacttgatat #### Tmc1_ID4835_8 --> 0 - 0 Original Alignment TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga Alignment from CESAR TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga Alignment from Spaln_aa2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga Alignment from Spaln_nt2Genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga Alignment from Pairagon TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga Alignment from Exonerate_protein2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga Alignment from Exonerate_coding2genome TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga Alignment from GeneWise TACCTCTGGGGTTTACCGTACGGCAGCTTACCTAGGAAAACAGTCCCAAGAGCTGAAGAAGCATCTGCAGCCAACTTTGGTGTGTTGTATGACTTCAAT cacctgcagtcttcaggtgttgatagctacagactctacttctttgacagTACTTGTGGGGTCTCCCATATGGCAGCTCACCTAGAAAAACAGTCCCAAGAGCTGAGGAAGCTTCTGCCCCCAACTTTGGTGTGTTATATGATTTCAATgtaggtttgccagactgccctttttaatgaacctcttggggtcaaggaga #### Tmc1_ID4839_6 --> 0 - 1 Original Alignment AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAa tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAagtatggggttgccctatctagctctatacaaagtttcctatttcagtagt Alignment from CESAR AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAa tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAagtatggggttgccctatctagctctatacaaagtttcctatttcagtagt Alignment from Spaln_aa2Genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtatggggttgccctatctagctctatacaaagtttcctatttcagtagt Alignment from Spaln_nt2Genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtatggggttgccctatctagctctatacaaagtttcctatttcagtagt Alignment from Pairagon AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtatggggttgccctatctagctctatacaaagtttcctatttcagtagt Alignment from Exonerate_protein2genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtatggggttgccctatctagctctatacaaagtttcctatttcagtagt Alignment from Exonerate_coding2genome AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtatggggttgccctatctagctctatacaaagtttcctatttcagtagt Alignment from GeneWise AAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCTTGCGTCCCATGGGAAAACAAAATCAAGGCAATTGAAA tctagaaaaatgagatgataatattcatcccaggatgctgtgttttccagAAATGGGCAAAATTCCTCCGAGATTTTGAGAACTTCAAAGCGGCCTGCATCCCATGGGAAAACAAAATCAAGGCAATTGAAAgtatggggttgccctatctagctctatacaaagtttcctatttcagtagt #### Tmc1_ID4840_5 --> 1 - 0 Original Alignment gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctaggGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca Alignment from CESAR gGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctaggGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca Alignment from Spaln_aa2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca Alignment from Spaln_nt2Genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca Alignment from Pairagon GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca Alignment from Exonerate_protein2genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca Alignment from Exonerate_coding2genome GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca Alignment from GeneWise GGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCTCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAG aaaaactacaagcatcactgtgtctaactttgtgtttgtttgttttctagGGAAGCAAAGAAATTTGTGAGTGAGAATGAAGGCGCCCTTGGGAAAGGAAAGGGAAAGAAGTGGTTTGCATTTAAGATGATGATGGCCAAGgtgagggtactcttcactgaatataaaggtaattgttctggcagtaagca #### Tmem138_ID2881_2 --> 1 - 0 Original Alignment cATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagcATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat Alignment from CESAR cATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagcATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat Alignment from Spaln_aa2Genome CATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagCATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat Alignment from Spaln_nt2Genome CATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagCATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat Alignment from Pairagon CATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagCATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat Alignment from Exonerate_protein2genome CATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagCATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat Alignment from Exonerate_coding2genome CATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagCATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat Alignment from GeneWise CATCCAGGATATTGCAATCCTCTTCAACATCATCATAATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACCATCATTCTGACATCTGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATG ctcccagactgccattgaaattatctacaatgagtctcttacaatttcagCATCCAGGATATTGCTATCCTCTTCAACATAATCATAATTTTCCTCATGTTCTTTAACACCTTTGTCTTCCAGGCTGGCCTGGTCAACCTCCTTTTCCATAAGTTCAAAGGGACTATCATTCTGGCATCCGTGTACCTTGCCCTCAGCATCTCCCTACATGTCTGGGTCATGgtaagaagaacagtgtgctgagaagaaagagaaaggatcctgcatgtaat #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA acccatccctgccattcttcttacactttgacatctgtgtctccatccagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCAGCTTTACTCCAACCTACACACTGCTGAAgtaaggtgcaggtatccataaagataaatcaacaagcttgattttgctca #### Tmem180_ID9864_6 --> 2 - 2 Original Alignment gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag cctgttgagatttaaccattcctcaagtactgttctctttcaacccttaggcATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCaggtaagtccaacctggtcttgatcctgtacctctatagccacttattacct Alignment from CESAR gcATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCag cctgttgagatttaaccattcctcaagtactgttctctttcaacccttaggcATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCaggtaagtccaacctggtcttgatcctgtacctctatagccacttattcctt Alignment from Spaln_aa2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTG---------------CCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgagatttaaccattcctcaagtactgttctctttcaacccttagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtaagtccaacctggtcttgatcctgtacctctatagccacttattacct Alignment from Spaln_nt2Genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCC---------------CCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgagatttaaccattcctcaagtactgttctctttcaacccttagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtaagtccaacctggtcttgatcctgtacctctatagccacttattacct Alignment from Pairagon GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCT---------------GCCCCTGTGCCGGCGCTGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgagatttaaccattcctcaagtactgttctctttcaacccttagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtaagtccaacctggtcttgatcctgtacctctatagccacttattacct Alignment from Exonerate_protein2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgagatttaaccattcctcaagtactgttctctttcaacccttagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtaagtccaacctggtcttgatcctgtacctctatagccacttattacct Alignment from Exonerate_coding2genome GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgagatttaaccattcctcaagtactgttctctttcaacccttagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtaagtccaacctggtcttgatcctgtacctctatagccacttattacct Alignment from GeneWise GCATCTCCTATGTCGCTCCTCATCTCAACAACCTGTACTTCCTGCCCCTGTGCCGGCGC---------------TGGGGTGTCTATGCAGTGGTGCGGGGGCTCTTCCTGCTCAAGCTGAGCCTTAGCCTCCTCATGCTGTTGGCTGGCCCAGACCACCCTGGCCTGCTTTGCTTCTTCATTGCCAG cctgttgagatttaaccattcctcaagtactgttctctttcaacccttagGCATTTCCTATGTTGCCCCTCATCTTAACAACCTCTATTTCCTGCCTCTATGCCGAAGGCCCCTGTGCAGACACTGGGGTATCTATGCAGTAGTACGAGGGCTTTTTTTGCTCAAGCTGAGCCTTAGTCTTCTAATGCTGCTGGCTGGGCCAGACCACCCTGGCCTGCTTTGCTCCTTCATTGCCAGgtaagtccaacctggtcttgatcctgtacctctatagccacttattacct #### Tmem258_ID2706_2 --> 0 - 2 Original Alignment GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttatagGAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt Alignment from CESAR GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCgt ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttatagGAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTgtgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt Alignment from Spaln_aa2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttatagGAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt Alignment from Spaln_nt2Genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttatagGAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt Alignment from Pairagon ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttaTAGGAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt Alignment from Exonerate_protein2genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttatagGAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt Alignment from Exonerate_coding2genome GAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttatagGAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt Alignment from GeneWise ATGGAGCTCGAAGCCATGAGTAGGTACACCAGCCCAGTGAACCCGGCTGTCTTCCCTCACCTGACTGTGGTACTTCTGGCCATCGGCATGTTCTTCACTGCCTGGTTCTTCGT ctccatgatctgcctaagttgaacctgagtgttttggcttttgtttatag---GAGCTGGAAGCAATGAGTAGGTATACCAGCCCAGTGAACCTGGCTGTCTTCCCTCACCTGACTGTGTTACTGCTTGCCATTGGCATGTTCTTCACTGCCTGGTTCTTTGTgtaggctttatatgatagcataaggcttcttttaggacttctttcctagt #### Tmem2_ID4947_9 --> 1 - 0 Original Alignment gGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccaggGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca Alignment from CESAR gGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccaggGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca Alignment from Spaln_aa2Genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccagGGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca Alignment from Spaln_nt2Genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccagGGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca Alignment from Pairagon GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccagGGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca Alignment from Exonerate_protein2genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccagGGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca Alignment from Exonerate_coding2genome GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccagGGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca Alignment from GeneWise GGCTGTTTCAACTTTCTGGATTGCCCACCCCAACAACCACCTGATCAATAACGCAGCTGCAGGCTCACAG cagtggttgtttaaagagtgagtgaagtatgtgttttcttcacctcccagGGCAGTTTCAACTTTCTGGATCGCTCACCCCAACAACCACCTAATCAATAATACAGCTGCAGGTTCACAGgtaagactcccatgttttagtttttcacacacttgcgaggtctgcaatca #### Tmem2_ID4953_14 --> 1 - 2 Original Alignment tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagtGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta Alignment from CESAR tGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACag tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagtGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATaggtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta Alignment from Spaln_aa2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta Alignment from Spaln_nt2Genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta Alignment from Pairagon TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta Alignment from Exonerate_protein2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta Alignment from Exonerate_coding2genome TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta Alignment from GeneWise TGATGGGAGCTTCCCAAGCGATGAAGGGTCCAGTCAGGAGGTGACAGAGTCCCTCTTTGTCGGGGAGAGTAGGAATTACGGCTTTCAAGGTGGCCAAAACAAGTACATGGGCACAGGGGGAATCGATCAGAAGCCTCGGACGCTACCCAGGAACAG tgtgtgcctgctacttttgaacacttactattttgttttgtttttgctagTGATGGGAGCTTTGCAACTGATGAAGGGTCCAGTCAGGAGGTAACAGAGTCCCTCTTTGTTGGGGAAAGTAGGATATATGGCTTTCAAGAAGGTCAAAACAAGTACATGGGCTCAGGCGGAATTGACCAGAAACCTCGCAGTCTACCCAGAAATAGgtaagatggatgtgggtagtggagtagttcacctgtatggcttttctgta #### Tmem2_ID4962_19 --> 1 - 0 Original Alignment gTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaaggTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATAT---CAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta Alignment from CESAR gTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaaggTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATAT---CAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta Alignment from Spaln_aa2Genome GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaagGTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATAT---CAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta Alignment from Spaln_nt2Genome GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaagGTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATA---TCAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta Alignment from Pairagon GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaagGTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATAT---CAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta Alignment from Exonerate_protein2genome GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaagGTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATAT---CAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta Alignment from Exonerate_coding2genome GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaagGTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATAT---CAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta Alignment from GeneWise GTTATTGTTTCTGTATCTCAGAGCCCACAGCCACAGAGATGGCCACAGTTACTGTTCATCTCAGGGATGTGAAAGAGTCAAGATTCAGGCAGCAACAGACTCCAAAGATATCAGTAACTGCATGGCCAAAGCGTACCCGCAGTATTACAAGAAGCCCTCGGCGGTCAAGCGCATGCCGGCCATGCTCACGGGGCTCTGTCAAGGCTGTGGAACCCACCAG gaatactgagtgaacaacctatatcaccggttggtttgtttttaataaagGTTATTGTTTTTATATCTCAGGGCCCACAGCCATAGAGATGGTCACAGTTACTGTTCATCACAGGGATGTGAAAGAGTTAGGATTCAGACAGCGACAGACTCTAGAGACATCACTAATTGCATGGCAAAAGCATAT---CAGTATTACAGAAAGCCCTCAGCAGTCAAGCATATGCCAGCCATGCTAACAGGACTCTGTCAAGGTTGTGGAACCCACCAAgtgagtagtgaagtaggagcaggtcattggtaaagtaattacctattcta #### Tmem2_ID4964_21 --> 0 - 2 Original Alignment GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAaggtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt Alignment from CESAR GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAag agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAaggtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt Alignment from Spaln_aa2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAAGgtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt Alignment from Spaln_nt2Genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAAGgtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt Alignment from Pairagon GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAAGgtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt Alignment from Exonerate_protein2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAAGgtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt Alignment from Exonerate_coding2genome GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAAGgtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt Alignment from GeneWise GTCAATGGTACTGACTTTACCTTCCGGAGTGCGGGTGCCCTCCTCCTCATTGTGGATGCCTGCAGTGTGCCCTTCCGGGTGAAGGAAAAGCGGATGTTCCTTTCTGCAGACGTCAGTCACATGGAAGAATATTTCAAGGCTAGCATCCCCCCAAG agtgatgtcaataaatatgacatggtttatgctttgggggattcccgcagGTCAATGGTACTGACTTTACCTCCCGAAGTGCAGGAGCCCTCCTTCTTATTGTGGATGTGTGTAGTGTACCCTCCCTTGTGAAGGAAAAACATATGTTCCTTTCTTCTGATGTCAGTCATATGGAGGAATACTTTAAAGCTCATATCCCCCCAAGgtaaggctgcctcaccccttgatgaggcacttataatcagaagtgtactt #### Tnks2_ID7181_2 --> 2 - 1 Original Alignment gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg tcatttctttacattgtgataatcatctgttttgatttttgttttttaaggcTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTggtagggctatattttttggattttctgcaagctgtaagtatcctgagatg Alignment from CESAR gtTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTg tcatttctttacattgtgataatcatctgttttgatttttgttttttaaggcTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTggtagggctatattttttggattttctgcaagctgtaagtatcctgagatg Alignment from Spaln_aa2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttctttacattgtgataatcatctgttttgatttttgttttttaagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTGgtagggctatattttttggattttctgcaagctgtaagtatcctgagatg Alignment from Spaln_nt2Genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttctttacattgtgataatcatctgttttgatttttgttttttaagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTGgtagggctatattttttggattttctgcaagctgtaagtatcctgagatg Alignment from Pairagon GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttctttacattgtgataatcatctgttttgatttttgttttttaagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTGgtagggctatattttttggattttctgcaagctgtaagtatcctgagatg Alignment from Exonerate_protein2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttctttacattgtgataatcatctgttttgatttttgttttttaagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTGgtagggctatattttttggattttctgcaagctgtaagtatcctgagatg Alignment from Exonerate_coding2genome GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttctttacattgtgataatcatctgttttgatttttgttttttaagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTGgtagggctatattttttggattttctgcaagctgtaagtatcctgagatg Alignment from GeneWise GTTTTGGACGGAAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTCCTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCCAAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGCATTG tcatttctttacattgtgataatcatctgttttgatttttgttttttaagGCTTTGGGCGGAAGGATGTGGTTGAGTATCTTCTTCGAAACAGTGCAAATGTCCAGACACATGATGATGGGGGTCTTATTCCTCTTCATAATGCTTGCTCTTTTAGTCATACTGAAGTTATTAATCTTCTCTTACAACATGGTGCAGATCCAAATGCTCGAGATAATTGGAATCATACTCCTCTCCACAAAGCTGCAATAAAAGGCAAAATTGACGTGTGCATTGgtagggctatattttttggattttctgcaagctgtaagtatcctgagatg #### Tnks2_ID7190_11 --> 1 - 0 Original Alignment aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagaTTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag Alignment from CESAR aTTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagaTTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag Alignment from Spaln_aa2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag Alignment from Spaln_nt2Genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag Alignment from Pairagon ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag Alignment from Exonerate_protein2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag Alignment from Exonerate_coding2genome ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag Alignment from GeneWise ATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTGAAACATGAAGCAAAG tatgttttttctccacaaaaatgatacctcttctccctttatgtgcctagATTCTTGACACCTCTGCATGTGGCTTCTGAAAATGCTCATAATGACATTGTTGAAGTAGTTGTGAAACATGAAGCGAAGgtgagtgctatatccaacttctaagcatttagtcggtaatatttgttcag #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_coding2genome CAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccaCAGGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg #### Trpm3_ID5039_5 --> 2 - 0 Original Alignment gtGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT cttctgccaggggacctagcattctagctgttgcacattttctcttttaggtGTAATCCACCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCCCGAGGGAAGATATGTACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAATCAGGAAGACCTGATTGGAAGAGATgtaagtcttgggggatgctggattgtctgacatctctcactggcttatgt Alignment from CESAR gtGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT cttctgccaggggacctagcattctagctgttgcacattttctcttttaggtGTAATCCACCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCCCGAGGGAAGATATGTACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAATCAGGAAGACCTGATTGGAAGAGATgtaagtcttgggggatgctggattgtctgacatctctcactggcttatgt Alignment from Spaln_aa2Genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT cttctgccaggggacctagcattctagctgttgcacattttctcttttagGTGTAATCCACCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCCCGAGGGAAGATATGTACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAATCAGGAAGACCTGATTGGAAGAGATgtaagtcttgggggatgctggattgtctgacatctctcactggcttatgt Alignment from Spaln_nt2Genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT cttctgccaggggacctagcattctagctgttgcacattttctcttttagGTGTAATCCACCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCCCGAGGGAAGATATGTACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAATCAGGAAGACCTGATTGGAAGAGATgtaagtcttgggggatgctggattgtctgacatctctcactggcttatgt Alignment from Pairagon GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT cttctgccaggggacctagcattctagctgttgcacattttctcttttagGTGTAATCCACCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCCCGAGGGAAGATATGTACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAATCAGGAAGACCTGATTGGAAGAGATgtaagtcttgggggatgctggattgtctgacatctctcactggcttatgt Alignment from Exonerate_protein2genome GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT cttctgccaggggacctagcattctagctgttgcacattttctcttttagGTGTAATCCACCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCCCGAGGGAAGATATGTACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAATCAGGAAGACCTGATTGGAAGAGATgtaagtcttgggggatgctggattgtctgacatctctcactggcttatgt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGTCATTCGTCATGTTGGAGATGCCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGTGGAAAACCAGGAAGACCTGATTGGAAGAGAT cttctgccaggggacctagcattctagctgttgcacattttctcttttagGTGTAATCCACCATGTTGGAGATGCCCTAAAAGACCATGCATCGAAGGCCCGAGGGAAGATATGTACCATAGGTATAGCCCCCTGGGGAATTGTGGAAAATCAGGAAGACCTGATTGGAAGAGATgtaagtcttgggggatgctggattgtctgacatctctcactggcttatgt #### Trpm3_ID5041_6 --> 0 - 1 Original Alignment GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAa tgtgcgttctactttcacctctctgcatttatgtttctttttgcttctagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATCCTGGCAGACAATGGGACCACAGGGAAATATGGTGCTGAGGTGAAACTGCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAagtctgttaagttgtgtatcagggcaaggaagagtagataggaacactgtg Alignment from CESAR GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAa tgtgcgttctactttcacctctctgcatttatgtttctttttgcttctagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATCCTGGCAGACAATGGGACCACAGGGAAATATGGTGCTGAGGTGAAACTGCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAagtctgttaagttgtgtatcagggcaaggaagagtagataggaacactgtg Alignment from Spaln_aa2Genome GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA tgtgcgttctactttcacctctctgcatttatgtttctttttgcttctagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATCCTGGCAGACAATGGGACCACAGGGAAATATGGTGCTGAGGTGAAACTGCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtctgttaagttgtgtatcagggcaaggaagagtagataggaacactgtg Alignment from Spaln_nt2Genome GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA tgtgcgttctactttcacctctctgcatttatgtttctttttgcttctagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATCCTGGCAGACAATGGGACCACAGGGAAATATGGTGCTGAGGTGAAACTGCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtctgttaagttgtgtatcagggcaaggaagagtagataggaacactgtg Alignment from Pairagon GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA tgtgcgttctactttcacctctctgcatttatgtttctttttgcttctagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATCCTGGCAGACAATGGGACCACAGGGAAATATGGTGCTGAGGTGAAACTGCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtctgttaagttgtgtatcagggcaaggaagagtagataggaacactgtg Alignment from Exonerate_protein2genome GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA tgtgcgttctactttcacctctctgcatttatgtttctttttgcttctagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATCCTGGCAGACAATGGGACCACAGGGAAATATGGTGCTGAGGTGAAACTGCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtctgttaagttgtgtatcagggcaaggaagagtagataggaacactgtg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGCAAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACGGAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAA tgtgcgttctactttcacctctctgcatttatgtttctttttgcttctagGTAGTCCGACCGTACCAGACCATGTCCAATCCTATGAGCAAGCTCACTGTTCTCAATAGTATGCACTCCCACTTCATCCTGGCAGACAATGGGACCACAGGGAAATATGGTGCTGAGGTGAAACTGCGTAGACAACTGGAAAAGCACATTTCACTCCAGAATATAAACACAAgtctgttaagttgtgtatcagggcaaggaagagtagataggaacactgtg #### Trpm3_ID5054_10 --> 2 - 0 Original Alignment gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgtttatcatttttgacgctgcctccttcccagcaggtGCTAATCCATCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtgagtgaggaatttaaggtgttactggtgacaaggttatcaaaggtagg Alignment from CESAR gtGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgtttatcatttttgacgctgcctccttcccagcaggtGCTAATCCATCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtgagtgaggaatttaaggtgttactggtgacaaggttatcaaaggtagg Alignment from Spaln_aa2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgtttatcatttttgacgctgcctccttcccagcagGTGCTAATCCATCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtgagtgaggaatttaaggtgttactggtgacaaggttatcaaaggtagg Alignment from Spaln_nt2Genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgtttatcatttttgacgctgcctccttcccagcagGTGCTAATCCATCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtgagtgaggaatttaaggtgttactggtgacaaggttatcaaaggtagg Alignment from Pairagon GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgtttatcatttttgacgctgcctccttcccagcagGTGCTAATCCATCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtgagtgaggaatttaaggtgttactggtgacaaggttatcaaaggtagg Alignment from Exonerate_protein2genome GTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgtttatcatttttgacgctgcctccttcccagcagGTGCTAATCCATCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtgagtgaggaatttaaggtgttactggtgacaaggttatcaaaggtagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --GGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGTTGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCG ttttcaatattctgtgtttatcatttttgacgctgcctccttcccagCAGGTGCTAATCCATCTGCCCCAGACCAACTAAGCTTAGCTTTAGCTTGGAACAGAGTTGACATTGCTCGCAGCCAGATCTTTATTTATGGGCAGCAGTGGCCAgtgagtgaggaatttaaggtgttactggtgacaaggttatcaaaggtagg #### Trpm3_ID5061_17 --> 0 - 0 Original Alignment GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA aatacactggcatttaatgagattactaatacgattttaatcactgttagGTAATTCTGGGAATTTTAGTTACCCCTTCAATTCTCAGTTTAGAGCTCAAGAATAAAGATGACATGCCCCATATGACCCAAGCTCAAGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAGGAGAAAGATGAAGAAGACATGGAACTAAGTgttgtggaagcattcacatttatctttgcagatgagacttttgttagaga Alignment from CESAR GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA aatacactggcatttaatgagattactaatacgattttaatcactgttagGTAATTCTGGGAATTTTAGTTACCCCTTCAATTCTCAGTTTAGAGCTCAAGAATAAAGATGACATGCCCCATATGACCCAAGCTCAAGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAGGAGAAAGATGAAGAAGACATGGAACTAAGTgttgtggaagcattcacatttatctttgcagatgagacttttgttagaga Alignment from Spaln_aa2Genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA aatacactggcatttaatgagattactaatacgattttaatcactgttagGTAATTCTGGGAATTTTAGTTACCCCTTCAATTCTCAGTTTAGAGCTCAAGAATAAAGATGACATGCCCCATATGACCCAAGCTCAAGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAGGAGAAAGATGAAGAAGACATGGAACTAAGTgttgtggaagcattcacatttatctttgcagatgagacttttgttagaga Alignment from Spaln_nt2Genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA aatacactggcatttaatgagattactaatacgattttaatcactgttagGTAATTCTGGGAATTTTAGTTACCCCTTCAATTCTCAGTTTAGAGCTCAAGAATAAAGATGACATGCCCCATATGACCCAAGCTCAAGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAGGAGAAAGATGAAGAAGACATGGAACTAAGTgttgtggaagcattcacatttatctttgcagatgagacttttgttagaga Alignment from Pairagon GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAA aatacactggcatttaatgagattactaatacgattttaatcactgttagGTAATTCTGGGAATTTTAGTTACCCCTTCAATTCTCAGTTTAGAGCTCAAGAATAAAGATGACATGCCCCATATGACCCAAGCTCAAGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAGGAGAAAGATGAAGAAGACATGGAACTAAgtgttgtggaagcattcacatttatctttgcagatgagacttttgttagaga Alignment from Exonerate_protein2genome GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA aatacactggcatttaatgagattactaatacgattttaatcactgttagGTAATTCTGGGAATTTTAGTTACCCCTTCAATTCTCAGTTTAGAGCTCAAGAATAAAGATGACATGCCCCATATGACCCAAGCTCAAGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAGGAGAAAGATGAAGAAGACATGGAACTAAGTgttgtggaagcattcacatttatctttgcagatgagacttttgttagaga Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGCCGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA aatacactggcatttaatgagattactaatacgattttaatcactgttagGTAATTCTGGGAATTTTAGTTACCCCTTCAATTCTCAGTTTAGAGCTCAAGAATAAAGATGACATGCCCCATATGACCCAAGCTCAAGAAATTCATCTCCAAGAGAAGGAGCCAGAGGAGCCAGAGAAGCCAACCAAGGAGAAAGATGAAGAAGACATGGAACTAAGTgttgtggaagcattcacatttatctttgcagatgagacttttgttagaga #### Trpm3_ID5079_23 --> 1 - 1 Original Alignment cAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGa ccttgaataatctatacttgttggttcacatccatctgtctattacgtagtAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGagtaagttccaagcagtccaatagctacaataaccatccaagcaggtccat Alignment from CESAR cAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGa ccttgaataatctatacttgttggttcacatccatctgtctattacgtagtAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGagtaagttccaagcagtccaatagctacaataaccatccaagcaggtccat Alignment from Spaln_aa2Genome CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcacatccatctgtctattacgtagTAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttccaagcagtccaatagctacaataaccatccaagcaggtccat Alignment from Spaln_nt2Genome CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcacatccatctgtctattacgtagTAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttccaagcagtccaatagctacaataaccatccaagcaggtccat Alignment from Pairagon CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcacatccatctgtctattacgtagTAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttccaagcagtccaatagctacaataaccatccaagcaggtccat Alignment from Exonerate_protein2genome CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcacatccatctgtctattacgtagTAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttccaagcagtccaatagctacaataaccatccaagcaggtccat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CAATACATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGA ccttgaataatctatacttgttggttcacatccatctgtctattacgtagTAATACATTTTTTGAGGTCAAGTTGATATCCAACCAGGTGTGGAAATTTCAGAGGTACCAGCTCATCATGACTTTCCATGAGAGGCCAGTTCTGCCCCCGCCACTCATTATCTTCAGTCACATGACCATGATCTTCCAGCATGTGTGCTGCCGGTGGAGGAAGCAGGAGAGTGACCAGGACGAAAGGGATTACAGCTTGAgtaagttccaagcagtccaatagctacaataaccatccaagcaggtccat #### Trpm6_ID4473_11 --> 2 - 0 Original Alignment gtACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagggTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg Alignment from CESAR gtACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagggTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg Alignment from Spaln_aa2Genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagGGTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg Alignment from Spaln_nt2Genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagGGTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg Alignment from Pairagon GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagGGTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg Alignment from Exonerate_protein2genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagGGTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg Alignment from Exonerate_coding2genome GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagGGTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg Alignment from GeneWise GTACAAGCTTATCAATATCAGAACAATTAAATCTGGCAATGGCTTGGGATAGAATGGACATTGCCAAGAAACATATCCTAACTTATGGACAACATTGGAAG tcttgtaccttcgactgaaacagctctgaagggtgagctttctcttctagGGTCAAGCTTGTCAATATCAGAACGATTCAATCTAGCAATGGCTTGGGACAGAATGGACATTGCCAAAAAACAGATCCTGAAATATGGACAACATTGGAAAgtaagctaagaatgacattaatcagtgatgaatgctcttgtcttcatagg #### Trpm6_ID4480_17 --> 1 - 0 Original Alignment gCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacaggCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct Alignment from CESAR gCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacaggCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct Alignment from Spaln_aa2Genome GCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacagGCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct Alignment from Spaln_nt2Genome GCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacagGCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct Alignment from Pairagon GCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacagGCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct Alignment from Exonerate_protein2genome GCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacagGCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct Alignment from Exonerate_coding2genome GCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacagGCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct Alignment from GeneWise GCAGTTTGGCCAGCTCGCCCTGGATGTATTAGAGAAAGCCTTCAAGCAGAACGAGCCGATGGCCATGAAGCTGCTGACCTATGAGCTCAAGAATTGGAGTAATTCCACCTGCTTGAAACTGGCGGTCTCTGGAGGTCTGCGCCCTTTTGTGTCGCATTCTTGTACCCAAATGCTGCTAACAGACATGTGGATGGGGCGTCTGAAAATGAGAAAAAATTCCTGGCTGAAG gaggctttagactgatctgctttttctttctacaaatctattcttaacagGCAGTTTGGCCAGCTTGCTCTGGATGTATTAGAGAAAGCCTTTAAGCAGAATGAGCCAATGGCCATGAAGCTATTGACTTATGAGCTCAAGAATTGGAGTAACTCCACATGCTTGAAACTAGCAGTATCTGGAGGTCTGTGGCCTTTTGTATCCCACTCTTGCACCCAAATGCTGCTCACAGACATGTGGATGGGGCGTCTCAAAATGAGAAAAAATTCCTGGCTGAGGgtaagggaatccgaggagggaaatacttttgaggttctagtttgggtgct #### Trpm6_ID4481_18 --> 0 - 0 Original Alignment ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa Alignment from CESAR ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa Alignment from Spaln_aa2Genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa Alignment from Spaln_nt2Genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa Alignment from Pairagon ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa Alignment from Exonerate_protein2genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa Alignment from Exonerate_coding2genome ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa Alignment from GeneWise ATAATCATCAGTATCCTCTTACCACCCATGATTTTGACATTGGAATTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTTCCAGTTTACATGGAATTACAGTGACCAGGGCCTGAGTAACACCAAAGAAAGTGCTTGTGTG tcaataccacctgtcccccctgttcaacacccaccctcactctcttccagATAATTATCAGTATTCTCTTGCCACCCATGATCTTAACATTGGAGTTTAAAAGCAAAGCAGAGATGTCACATGTCCCACAGTCCCAGGATTATCAGTTTACATGGAATTATAGTGACCAGGGCCTGACTAACACCAAAGATAGTGCTTGTGTGgtgagttcccaaccataggaggcctgttgtatgaatgtactcagagataa #### Trpm6_ID4483_20 --> 0 - 0 Original Alignment ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa Alignment from CESAR ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa Alignment from Spaln_aa2Genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa Alignment from Spaln_nt2Genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa Alignment from Pairagon ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa Alignment from Exonerate_protein2genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa Alignment from Exonerate_coding2genome ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa Alignment from GeneWise ATGGCTTATTTGGCATTCCTCATGCTGTTCACTTACACAGTGTTGGTGGAGATGCAGCCCCAACCCAGCGTGCACGAATGGCTTGTCATCATCTACATCTTCACCAATGCTATTGAGAAGGTCAGGGAG agaatagtgttgataaatttggagactcatgcttctctactctcttgcagATGGCTTATTTGGCATTCCTCATGTTGTTCACTTATACAGTCTTAGTGGAAATGCAGCCCCAACCCAGTGTACATGAATGGCTTGTAATCATCTATATCTTCATTAAGGCCATTGAGAAGGTCAGAGAGgtgaggggggtgagctagtgatcaggtggcaagttattaataaatgtaaa #### Trpm6_ID4488_25 --> 2 - 2 Original Alignment agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagaaCTATACCTCACACGGGATGACTTACAAAAGCTT------------CAGCAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATcagtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca Alignment from CESAR agCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAag catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagaaCTATACCTCACACGGGATGACTTACAAAAGCTTCAG------------CAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATcagtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca Alignment from Spaln_aa2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagAACTATACCTCACACGGGATGACTTACAAAAGCTTCAG------------CAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca Alignment from Spaln_nt2Genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagAACTATACCTCACACGGGATGACTTACAAAAGCTTC------------AGCAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca Alignment from Pairagon AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagAACTATACCTCACACGGGATGACTTACAAAAGCTTC------------AGCAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca Alignment from Exonerate_protein2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagAACTATACCTCACACGGGATGACTTACAAAAGCTT------------CAGCAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca Alignment from Exonerate_coding2genome AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagAACTATACCTCACACGGGATGACTTACAAAAGCTT------------CAGCAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca Alignment from GeneWise AGCTCTATCTCACTAAGGATGACTTGAAAAAGCTTCATGATTTTGAAGAGCAGTGTGTGGAAAAATATTTCCACGAGAAGACGGAAGGTCTGAATTGTAGTTTTGAGGAACAAATTCGAATGACATCAGAAAG catttaggcaatggaatagaagaaatgcaagtctgtgccccacattgcagAACTATACCTCACACGGGATGACTTACAAAAGCTT------------CAGCAATGTGTGGGAGAGTATTTCCACAAGAAAACAGAAGGTCTAAACTGTAGTTTTGAGGAACAGATTCGAATGACATCAGATCAgtaagctacaccttgatccatcaaattcctaaaattgctctacaacctca #### Trpm6_ID4496_31 --> 1 - 1 Original Alignment aACAAGAAGTCCAAATGAAGTTCACa agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagaACAAGGAGTTCAAATGAAGTTCACagtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca Alignment from CESAR aACAAGAAGTCCAAATGAAGTTCACa agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagaACAAGGAGTTCAAATGAAGTTCACagtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca Alignment from Spaln_aa2Genome AACAAGAAGTCCAAATGAAGTTCACA agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagAACAAGGAGTTCAAATGAAGTTCACAgtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca Alignment from Spaln_nt2Genome AACAAGAAGTCCAAATGAAGTTCACA agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagAACAAGGAGTTCAAATGAAGTTCACAgtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca Alignment from Pairagon AACAAGAAGTCCAAATGAAGTTCACA agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagAACAAGGAGTTCAAATGAAGTTCACAgtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca Alignment from Exonerate_protein2genome agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagaacaaggagttcaaatgaagttcacagtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca Alignment from Exonerate_coding2genome agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagaacaaggagttcaaatgaagttcacagtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca Alignment from GeneWise AACAAGAAGTCCAAATGAAGTTCACA agtttttggatgtccagaaaacctaacatattcatctatctcttctcaagAACAAGGAGTTCAAATGAAGTTCACAgtgagttatgagattgaaatggtgatccatcttcatcactcacacaggca #### Trpm6_ID4507_36 --> 1 - 1 Original Alignment gTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAg ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttaggTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAggtactgaattgtagatgacaatataaaaataatagaacaccatcacaata Alignment from CESAR gTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAg ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttaggTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAggtactgaattgtagatgacaatataaaaataatagaacaccatcacaata Alignment from Spaln_aa2Genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttagGTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAGgtactgaattgtagatgacaatataaaaataatagaacaccatcacaata Alignment from Spaln_nt2Genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttagGTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAGgtactgaattgtagatgacaatataaaaataatagaacaccatcacaata Alignment from Pairagon GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttagGTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAGgtactgaattgtagatgacaatataaaaataatagaacaccatcacaata Alignment from Exonerate_protein2genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttagGTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAGgtactgaattgtagatgacaatataaaaataatagaacaccatcacaata Alignment from Exonerate_coding2genome GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttagGTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAGgtactgaattgtagatgacaatataaaaataatagaacaccatcacaata Alignment from GeneWise GTTTCTCGAGGTTTCCTTGGTCTACTGCCATTCAGCCAACCAATGGTTAACCATTGAGAAGTACATGACAGGGGAGTTCCGGAAATACAATAACAACAATGGTGATGAAATAGCTCCCACCAATACCCTGGAAGAACTGATGTTGGCTTTCTCTCACTGGACCTATGAATATACCCGGGGAGAGCTGCTGGTTTTAGATTTGCAAG ccatagatatcgtcaggggctcagaactgtttgttgttccctttccttagGTTTCTTGAGGTTCCTTTAGTCTACTGTCATTCAGCTAAACAATGGGTGACCATTGAGAAGTATATGACTGGAGAGTTTCGAAAATACAATAACAACAATGGGGACCAAATAGCTCCCACCAATACCCTGGTAGAACTGATGCTGGCTTTCTCT---TGGACCTACAAATACACACGGGGAGAGTTATTGGTTTTAGATTTACAAGgtactgaattgtagatgacaatataaaaataatagaacaccatcacaata #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg gggagacagagcctcattccagctgttctgcctgttccctggactctcaggcATTCGCCCAAAT------GTAACAGTGTTTATTGATGGGCCACTAGCCCTCGCAggtatctatcaccccccagggctggctgcatcacactcacagagaatgtga Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAg gggagacagagcctcattccagctgttctgcctgttccctggactctcaggcATTCGCCCAAAT------GTAACAGTGTTTATTGATGGGCCACTAGCCCTCGCAggtatctatcaccccccagggctggctgcatcacactcacagagaatgtga Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG gggagacagagcctcattccagctgttctgcctgttccctggactctcagGCATTCGCCCAAAT------GTAACAGTGTTTATTGATGGGCCACTAGCCCTCGCAGgtatctatcaccccccagggctggctgcatcacactcacagagaatgtga Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG gggagacagagcctcattccagctgttctgcctgttccctggactctcagGCATTCGCCCAAAT------GTAACAGTGTTTATTGATGGGCCACTAGCCCTCGCAGgtatctatcaccccccagggctggctgcatcacactcacagagaatgtga Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG gggagacagagcctcattccagctgttctgcctgttccctggactctcagGCATTCGCCCAAAT------GTAACAGTGTTTATTGATGGGCCACTAGCCCTCGCAGgtatctatcaccccccagggctggctgcatcacactcacagagaatgtga Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG gggagacagagcctcattccagctgttctgcctgttccctggactctcagGCATTCGCCCAAAT------GTAACAGTGTTTATTGATGGGCCACTAGCCCTCGCAGgtatctatcaccccccagggctggctgcatcacactcacagagaatgtga Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGTG gggagacagagcctcattccagctgttctgcctgttccctggactctcaggcattcgcccaaatgtaacagtgtttattgatgggccactagccctcgcaggtatctatcaccccccagggctggctgcatcaCACTCACAGAGAATGTGA Alignment from GeneWise GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCCCTAGCCCTCACAG gggagacagagcctcattccagctgttctgcctgttccctggactctcagGCATTCGCCCAAAT------GTAACAGTGTTTATTGATGGGCCACTAGCCCTCGCAGgtatctatcaccccccagggctggctgcatcacactcacagagaatgtga #### Trub1_ID12384_4 --> 0 - 1 Original Alignment AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagAGATACATCACCATTGGAGAACTGGGTAAGGCTACAGACACCTTGGATGGTACAGGAAAGGTAACAAAAGAGAAACCATATggtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt Alignment from CESAR AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATg tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagAGATACATCACCATTGGAGAACTGGGTAAGGCTACAGACACCTTGGATGGTACAGGAAAGGTAACAAAAGAGAAACCATATggtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt Alignment from Spaln_aa2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagAGATACATCACCATTGGAGAACTGGGTAAGGCTACAGACACCTTGGATGGTACAGGAAAGGTAACAAAAGAGAAACCATATGgtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt Alignment from Spaln_nt2Genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagAGATACATCACCATTGGAGAACTGGGTAAGGCTACAGACACCTTGGATGGTACAGGAAAGGTAACAAAAGAGAAACCATATGgtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt Alignment from Pairagon AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagAGATACATCACCATTGGAGAACTGGGTAAGGCTACAGACACCTTGGATGGTACAGGAAAGGTAACAAAAGAGAAACCATATGgtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt Alignment from Exonerate_protein2genome AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagAGATACATCACCATTGGAGAACTGGGTAAGGCTACAGACACCTTGGATGGTACAGGAAAGGTAACAAAAGAGAAACCATATGgtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt Alignment from Exonerate_coding2genome tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagagatacatcaccattggagaactgggtaaggctacagacaccttggatggtacaggaaaggtaacaaaagagaaaccatatggtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt Alignment from GeneWise AGGTATATCACCATCGGAGAACTGGGGAAAGCCACGGACACCCTGGATTCTACTGGGAAGGTAACGGAAGAGAAGCCGTATG tgttcggagaaaaaatgctcaccatcacctctctccattgctgtctctagAGATACATCACCATTGGAGAACTGGGTAAGGCTACAGACACCTTGGATGGTACAGGAAAGGTAACAAAAGAGAAACCATATGgtgagtcacctcagtgtataagaatctgttgcccagcccggcacctcagt #### Tut1_ID2551_4 --> 2 - 0 Original Alignment gcTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacaggcTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from CESAR gcTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacaggcTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Spaln_aa2Genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Spaln_nt2Genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Pairagon GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Exonerate_protein2genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from Exonerate_coding2genome GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca Alignment from GeneWise GCTGTGTGGTCCATCCTTTTGGCTCTACTGTAAATAGCTTTGATGTTCATGGCTGTGATCTCGACCTCTTCTTGGACATGGGTGATATGGAAGAGACCGAG ttccacttatgctcctagttcctttgtatttgctctactcacgtccacagGCTGTGTGGTCCATCCTTTTGGATCTACTGTGAACAGCTTTGATGTTCATGGCTGTGATCTAGACCTCTTCTTGGACATGGGAGATATGGAAGAGACTGAGgtaagtgggaaaagtgtgtctgtcgtgtaattccagacaagtattgaaca #### Tut1_ID2555_8 --> 2 - 1 Original Alignment gtGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcaggtGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCagtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg Alignment from CESAR gtGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcaggtGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCagtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg Alignment from Spaln_aa2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCAgtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg Alignment from Spaln_nt2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCAgtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg Alignment from Pairagon GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCAgtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg Alignment from Exonerate_protein2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCAgtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg Alignment from Exonerate_coding2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCAgtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg Alignment from GeneWise GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctagagtaactaagtctacaatgatgtccctgcttcttcctttcagGTGAAGGGGAACAGGTTGAAGTTGATGGTTGGGATTGTAGCTTCCCAAAGGATGCCTCAATATTGGAACCTAGTACCAATGTTGAGCATCTCAgtaagtttagaacatattagtacataaaaggttgaagagtaggggaagtg #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg agggtaattatggttttaggtacaacattgttcttcatttgtacatgtaggGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTtggtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg agggtaattatggttttaggtacaacattgttcttcatttgtacatgtaggGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTtggtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from GeneWise GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat #### Uhrf2_ID6371_2 --> 0 - 0 Original Alignment TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgcagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg Alignment from CESAR TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgcagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg Alignment from Spaln_aa2Genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgcagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg Alignment from Spaln_nt2Genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgcagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg Alignment from Pairagon TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgcagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCAT---CAACAGCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg Alignment from Exonerate_protein2genome TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgcagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg Alignment from Exonerate_coding2genome CAGTTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgCAGCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg Alignment from GeneWise TTGGAAAATGGATATACTTTATTTGACTACGACGTTGGACTGAATGATATAATTCAGCTGCTAGTTCGTCCAGACTCCAGTCTTCCTAGCACATCTAAGCAGAATGATGCTCAGGTTAAACCCTCTTCTCATAATCCGCCTAAAGTAAAGAAAACAGCAAGAGGGGGATCTTCCAGTCAGCCATCTACATCAGCTCGCACTTGTCTTATTGACCCTGGCTTTGGACTATATAAG cgcaatctgagattgcctcccaaagatatatctatcccttttgtttgcagCTGGAAAATGGATATACATTATTTGACTATGATGTTGGACTAAATGATATTCTTCAGTTACTAGTTCGCCCAGACTCTAGCCTTCCTAGTACATCCAAGCAGAATGATGCTCAGGTTAAACCCTCTTCACACAATCCACCTAAGGTAAAGAAAGCAGTAAGGGGAGGATCTTCCAGCCAGCCATCAACA---GCTCGCACTTGCATTATTGACCCTGGCTCTGCTCTCTATAGGgtaaggggtccccaaagaaatcaattataaagttaaaggtctattctctg #### Uhrf2_ID6385_15 --> 0 - 0 Original Alignment AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct Alignment from CESAR AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct Alignment from Spaln_aa2Genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct Alignment from Spaln_nt2Genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct Alignment from Pairagon AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct Alignment from Exonerate_protein2genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct Alignment from Exonerate_coding2genome AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct Alignment from GeneWise AATTTTCTGAAGAAATTGGAACAATCTTTTATGTGTGTGTGCTGCCAAGAACTAGTTTACCAGCCTGTCACAACTGAATGCTTTCACAACGTCTGTAAG cctgatgacacaggtaaatctaaacatgacactgtcctttccacttgcagAATTTCCTGAAAAAACTTGAACAGTCTTTTATGTGTGTGTGCTGCAAAGAACTGGTTTACCAACCTGTCACTGCTGAATGCTTCCACAACATCTGTAAGgtaactttagacccagggcccctttagaggacttgcagagggaacatgct #### Unc93b1_ID216_7 --> 2 - 0 Original Alignment gtACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccaggtACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac Alignment from CESAR gtACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccaggtACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac Alignment from Spaln_aa2Genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac Alignment from Spaln_nt2Genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac Alignment from Pairagon GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac Alignment from Exonerate_protein2genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac Alignment from Exonerate_coding2genome GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac Alignment from GeneWise GTACTAAGAGCCAAGGCATTCTGAATGGCTTCAACAAGACGGTCCTTCGGACGCTGCCGCGCAGCAAAAACCTTATTGTTGTAGAGAGCGTGCTCATGGCGGTGGCCTTCTTGGCCATGCTGATG attcaatgcagtctgttggtaccatactcacagccgtctgcctggcccagGTACTCGGAGCCAAGGTATTCTAAATGGCTTTAACAAGACACTCCTCTGTACATTGCCACGCAGCAAAAACCTTATTATTGTGGCAAGCGTGCTCATGACAGTGGCCTTCTTAACCATCCTGATGgtatgtcttgggtcagtgaagagggggtaataaattgcaggagattgtac #### Vldlr_ID5808_7 --> 2 - 1 Original Alignment tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagttAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCcgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat Alignment from CESAR tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagttAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCcgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat Alignment from Spaln_aa2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat Alignment from Spaln_nt2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat Alignment from Pairagon TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat Alignment from Exonerate_protein2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat Alignment from Exonerate_coding2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat Alignment from GeneWise TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC tgccagaagagtgataactttaaactttcacccgtgtctcctttctccagTTAATCAGTGCTTGGGCCCTGGAAAATTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAGTATGTGATCAGGAACAAGACTGCAGAGACTGGAGTGATGAACCCCTGAAGGAATGCCgtaagggagaggaagggctggcgccagaggtttccttcaggataagtgat #### Vldlr_ID5813_12 --> 1 - 1 Original Alignment cTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCg ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagaTTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAGG---------GTGACAGAGGATATTAAATGGCCTAATGGAATTACA---ggtacaaatgttgttccttgttatgaattagtcaagcacctttacaccttt Alignment from CESAR cTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCg ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagaTTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAGG---------GTGACAGAGGATATTAAATGGCCTAATGGAATTACA---ggtacaaatgttgttccttgttatgaattagtcaagcacctttacaccttt Alignment from Spaln_aa2Genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagATTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAGG---------GTGACAGAGGATATTAAATGGCCTAATGGAATTACA---Ggtacaaatgttgttccttgttatgaattagtcaagcacctttacaccttt Alignment from Spaln_nt2Genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG----- ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagATTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAG---------GGTGACAGAGGATATTAAATGGCCTAATGGAATTACAGGTACAAATgttgttccttgttatgaattagtcaagcacctttacaccttt Alignment from Pairagon CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACA--------------------------------------------------- ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagATTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAG---------GGTGACAGAGGATATTAAATGGCCTAATGGAATTACAGGTACAAATGTTGTTCCTTGTTATGAATTAGTCAAGCACCTTTACACCTTT Alignment from Exonerate_protein2genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagATTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAGG---------GTGACAGAGGATATTAAATGGCCTAATGGAATTACA---Ggtacaaatgttgttccttgttatgaattagtcaagcacctttacaccttt Alignment from Exonerate_coding2genome CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACACTCG ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagATTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAGG---------GTGACAGAGGATATTAAATGGCCTAATGGAATTACA---Ggtacaaatgttgttccttgttatgaattagtcaagcacctttacaccttt Alignment from GeneWise CTTTGTTTACTGGTCAGACTGGGGCGAGCCAGCTAAAATAGAAAAAGCAGGAATGAATGGATTTGATAGACGTCCTCTGGTGACGGAGGACATCCAATGGCCTAATGGAATTACA- ttgagtattcttcaagctctagatcaggcttttttttcttcttctctaagATTTGTTTTTTGGTCAGATTGGGGCCAGCCAGCCAGAATTGAAAAAGCAGTAATGAATGGATTTGATAGG---------GTGACAGAGGATATTAAATGGCCTAATGGAATTACAGgtacaaatgttgttccttgttatgaattagtcaagcacctttacaccttt #### Vps13a_ID4055_68 --> 1 - 0 Original Alignment aGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctaggGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct Alignment from CESAR aGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctaggGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct Alignment from Spaln_aa2Genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctagGGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct Alignment from Spaln_nt2Genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctagGGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct Alignment from Pairagon AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctagGGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct Alignment from Exonerate_protein2genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctagGGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct Alignment from Exonerate_coding2genome AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctagGGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct Alignment from GeneWise AGCTACAGAGACTTCTGAAGTAGAGAGTTTACGACCTCCCAGATTCTTTAATGAAGATGGAGTCATCAGACCTTACAGGTTGCGCGATGGTTCAGGAAATCAAATGTTACAG atatataatagtgtgactacatatctaaccatctgttgactttcttctagGGCTACAGAGACTTCTGATGTAGAGAGTTTACGACCTCCCAAGTTCTTTAATGAAGATGGACTCATCAGACCTTACAGGTTGCGTGATGGTTCAGGAAATCAGATGTTACAGgtgagataagtaacaagctacaaattcccatcaattttaaaaaataatct #### Vps13a_ID4066_57 --> 0 - 1 Original Alignment ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAg gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAggtgagagttaaagttattttgtggcatatgccagcatcagagacatttat Alignment from CESAR ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAg gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAggtgagagttaaagttattttgtggcatatgccagcatcagagacatttat Alignment from Spaln_aa2Genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAGgtgagagttaaagttattttgtggcatatgccagcatcagagacatttat Alignment from Spaln_nt2Genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAGgtgagagttaaagttattttgtggcatatgccagcatcagagacatttat Alignment from Pairagon ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAGgtgagagttaaagttattttgtggcatatgccagcatcagagacatttat Alignment from Exonerate_protein2genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAGgtgagagttaaagttattttgtggcatatgccagcatcagagacatttat Alignment from Exonerate_coding2genome ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAGgtgagagttaaagttattttgtggcatatgccagcatcagagacatttat Alignment from GeneWise ATCCAAAATCAGATTCATGGTGCTATTTTCCCTTTCGTGTTTTATCCTATTAAACCTCCAAGATCTGTCACCATGGACTCAG gtacaagaaggtctaacatttagatagatcctactcttgagaaatttcagATTGAAAATCAGATCCATGGTGCTATTTTTCCTTTTGTGTTTTATCCAATCAAGACCCCAAGATCAGTCACAATAGACTCAGgtgagagttaaagttattttgtggcatatgccagcatcagagacatttat #### Vps13a_ID4067_56 --> 0 - 0 Original Alignment GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccagGTTCATTTAACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc Alignment from CESAR GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccagGTTCATTTAACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc Alignment from Spaln_aa2Genome GTTCGTTTAACACCTAGT---------GGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccagGTTCATTTAACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc Alignment from Spaln_nt2Genome GTTCGTTTAACAC---------CTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccagGTTCATTTAACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc Alignment from Pairagon GTT---------CGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccagGTTCATTTAACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc Alignment from Exonerate_protein2genome GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccaggttcatttaACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc Alignment from Exonerate_coding2genome GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccaggttcatttaACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc Alignment from GeneWise ---------GTTCGTTTAACACCTAGTGGCAATGACATGAAAATTCTGCAACCACATGTGATACCTGTCCGGAGAAATTACCTGCCAGCACTAAAAGTAGAATATAACACATCTGCACATCAGTCGTCATTCAGAATTCAGATTTATAGAATACAG taaattaaaatctgtaaatgacttctcttcgccttggtttgaatttccagGTTCATTTAACACGTCTAACACCTAGTGGCAATGATATGAGAATTTTGCAAACTCACCTGATACCTGTTCGTAGAAACTATCTTCCAGCACTAAAGGTAGCGTACAATACAACAGTACATCAGTGGTCGTTTAGAATTCAGATTTATAGGATTCAGgtacctttgagaatgaaaggaggacaagaaaaaccccatgaatccttatc #### Vps13a_ID4072_51 --> 0 - 0 Original Alignment AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc Alignment from CESAR AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc Alignment from Spaln_aa2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc Alignment from Spaln_nt2Genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTC---------TTGAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc Alignment from Pairagon AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTC---------TTGAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc Alignment from Exonerate_protein2genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc Alignment from Exonerate_coding2genome AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc Alignment from GeneWise AGTATCCCCTTTTGGCCTGAGAATGCCTCCAATATTCTTCTTATTCAAGTTGAGAGGAGTGAAGATCCTCCAAAAAGGATATATTTTAACAAGCAAGATAATTGTATTTTATTGAGACTGAATAATGAG catgcaatccaaaaaacacatgaaaaaagctctgtcctgctctgctacagAGCATCCCATTCTGGCCAGAGAATGCCTTGAATATCCTTCTT---------GAGAGGAGTGAGGACCCACCAAAAAGAATCTATTTCAATAAGCAAGATAATTGCACTTTACTGAGACTGAATAATGATgtttgtgcttgaacaattattaccttataatattacagataaattgatcc #### Vps13a_ID4073_50 --> 0 - 0 Original Alignment GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat Alignment from CESAR GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat Alignment from Spaln_aa2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat Alignment from Spaln_nt2Genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat Alignment from Pairagon GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat Alignment from Exonerate_protein2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat Alignment from Exonerate_coding2genome GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat Alignment from GeneWise GTTGGTGTCACTATAAATCTCAGCAGTTTTAACATTACCAGAATTGTGACATTTATTCCGTTTTATATGATTAAAAACAAAAGCAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTTCTCTTGACTTAGAGCAG tgtagcgaccgagtacttcatcctattattattctcttttgtaattttagGTTGGTGTCACTATAAACCTGGGCAGTTTTAACATTACAAGAATTGCAACATTTATTCCATTTTACATGATCAAGAACAAAAGTAAATACCATATATCAGTAGCAGAAGAAGGAAGTGATAAATGGCTTACTCTTGACTTAGAGCAGgtaagtaaacggcaacccatgatagattctgtgccttatgaagataatat #### Vps13a_ID4075_48 --> 0 - 0 Original Alignment GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa Alignment from CESAR GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa Alignment from Spaln_aa2Genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa Alignment from Spaln_nt2Genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa Alignment from Pairagon GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa Alignment from Exonerate_protein2genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa Alignment from Exonerate_coding2genome GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa Alignment from GeneWise GGCATTGAGAACACTGTTGTTACTCTAAGTGAAGGACATTCATCACAGATCTATAATGTAGAAATGGACCAAGCCAAGCTACACTTAAAATTACTCGACTATCTTAATCATGATTGGAAAAGTGAATTTTATATAAGATCTAGTCAACAAGACATCAATTTCATCAACTTTACCTGTCTCACAGAAATGGAAAAGAGTGACTTGGATATTGCTATCCATATGACTTACAACACTGGTCAGACAGTTGTGGCATTTCATAGTCCGTATTGGATGGTCAATAAAACCAATCGGATGCTACAGTACAAAGCAGATGGAATTCACCGAAAGCATCCACCTAATTATACAAAACCAGTTCTCTTTTCCTTTCAGCCAAATCACTTTTTTAACAACAATAAG agctgactgctgactgcaaatagaagtgagtctgtaacttttccttgtagGGAATTGAGAATACTGTTGTTACTTTAAGTGAAGGACATTCGTCACAGATATATAATGTAAAAATGGACCAAGCCAAGCTACACCTAAAATTGCTTTATTACCTTAACCATGACTGGAAGAGTGAGTTTTATATAAGATCTAGTCAACAAGACATCAATTTTATCAATTTTACTTGCTTGACGGAAATGGAAAAGAGTGATTTGGATATTGCTATTCACATGACTTACAACACTGGACAGACTGTTGTGGCTTTCCATAGTCCTTATTGGATGGCCAACAAAACGAATAGAATGCTACGATACAAGGCAGATGGCATTCACCGAAAACAT---CCCAATTATACAAAACCAGTTCTTTTTTCCTTTCAAACAAACCACTTTTTTAACAACAATAAAgtgagcgacgtttttctactcaagaaacataatctgataactcataaaaa #### Vps13a_ID4079_44 --> 0 - 1 Original Alignment GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTa atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTagtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct Alignment from CESAR GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTa atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTagtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct Alignment from Spaln_aa2Genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTAgtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct Alignment from Spaln_nt2Genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTAgtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct Alignment from Pairagon GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTAgtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct Alignment from Exonerate_protein2genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTAgtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct Alignment from Exonerate_coding2genome GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTAgtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct Alignment from GeneWise GCGTTTACTGAAGCTGCTACTGGATCGTCATCTGTCTTCCTAAGAGATCTAGCACCATTCATGATTTTCAATTCTCTTGGACTTACTGTCTCTGTCTCACCAAGCGATTCTTTTAGCGTTCTCAACGTTCCTTTGGCAAAATCATATGAACTGAAAAATGATGAGAGTTTAAGTATGGATTATGTACGAACGAAGGACAATGATCATTTCAATGCAATGACCAGCCTAAGCAGCAAGCTCTTCTTCATTCTCCTTA atgaagtgaagcaaggagagaaacagatcccaattgtctcttgtccccagGCATTTATCGAAGCTGCTACTGGGTCATTATCTGTCTTCCTGAGAGACCTAGCACCATTCATGATTTTCAACCCCTTTGGCCTCACACTTTCAGTCTCACCAAGTGATTCATTTAGTGTTCATAATGTTGCTCTGGCAAAAACATATGAACTGAAAAATGATGAGAGCTTAAGTATGGATTATGTGCGAACAAAGCAGAATGATCACTTCAATGCGGTAACAAGCCTAAGCAGCAAGCTGTTCTTCATTCTTCTTAgtacatgagattgtcacagaaaaaagtagtgatcttgattttccatgtct #### Vps13a_ID4082_41 --> 0 - 0 Original Alignment GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCACT---GAAGTGATG---CGTGGGGAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta Alignment from CESAR GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCACT---GAAGTGATGCGT---GGGGAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta Alignment from Spaln_aa2Genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCACT---GAAGTGATG---CGTGGGGAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta Alignment from Spaln_nt2Genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCAC---TGAAGTGATGC---GTGGGGAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta Alignment from Pairagon GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCAC---TGAAGTGATGC---GTGGGGAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta Alignment from Exonerate_protein2genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCACT---GAAGTGATG---CGTGGGGAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta Alignment from Exonerate_coding2genome GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCACT---GAAGTGATG---CGTGGGGAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta Alignment from GeneWise GTTTCACCAGTTATCATAAATACCATAATAACTATTACTTCAGCACTTTACACAACTAAGGAAACTGTCCCAGAAGAAAACACTTCTAATATAGCACATTTATGGGACAAGAAGGATACAAAGAATCTAAAAATGTGGTTTCTTGAAGAATCAAATGAAAGTGAAAAAGTAGTTCCCACGAATGAAGTGATGCCGGGAGGAGAGACACTGAACTTGCGTATTGATTCTATTTTTATTGTTCTGGAGGCTGGAATCGGTCATAGAACAGTGCCGATGCTGTTGGCAAAGGCGTGCTTCTCGGGGGAAAGCAAAAACTGGCTCTCTCTAATCAATCTTCACTGTCACCTGGAACTGGAA agtataggattatagtgttcctagaataacccctggccccctcattccagGTTTCACCAGTTATCATGAATACCATGATAACGATCACTTCAGCACTATATACAACTAAGGAATCTGTCCCAGAAGAGAACACTTCTAATATAGCACATTTGTGGGACAAGAAGGATACAAAAAACCTAAAGATGTGGTTTCTTGATGAATCAAATGAAAGTGAAAAAGTAGTTCCCACT---GAAGTGATGCGTGGG---GAAACCTTAAATTTGCGTATTGATTCTATTTTCATTGTTCTGGAGGCTGGAATTGGTCATAGAACTGTGCCAATGCTGTTGGCAAAGGCATGTTTCTCTGGGGAGAGTAAGAACTGGTTGTTTCTAATCAATCTGCATTGTCATGTTGAATTAGAGgtaagtggtcttgaatggttgagatgccaattgaatgactaactgtctta #### Vps13a_ID4089_34 --> 1 - 0 Original Alignment gTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGG---TACAAGGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagtTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAA---GTTGTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag Alignment from CESAR gTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGGTAC---AAGGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagtTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAAGTT---GTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag Alignment from Spaln_aa2Genome GTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGGTACAAGGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagTTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAAGTTGTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag Alignment from Spaln_nt2Genome GTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGGTACAA---GGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagTTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAAG---TTGTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag Alignment from Pairagon GTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGGT---ACAAGGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagTTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAAG---TTGTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag Alignment from Exonerate_protein2genome GTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGGTAC---AAGGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagTTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAAGTT---GTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag Alignment from Exonerate_coding2genome GTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGGTAC---AAGGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagTTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAAGTT---GTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag Alignment from GeneWise GTCTCAGTTTAGGAATGATACATACCAGGAAGTGCTGGACCTGCTACTACCTTTGAACTTGGAAGTGATTGTCGAACGGAACTTATCCTGGGAATGGTAC---AAGGAAGTCCCTTGTTTTAATATAAAAGCTCAGCTAAAGCCCATGGAG gttgatcaccagcttgccatttagtttggcctttctgcctctttccccagTTCTCAATTAAGGAATGATACATACCAGGAAGTTCTGGATTTGCTGCTGCCTTTAAACTTGGAAGTT---GTCAAACGGACTTTATACTGGGAATGGTACAACAAGGAGGTCCCTTGTTTTAATATAAAAGCCCAATTACAGTCCATGGAGgtaggtatttcactagatcttgtatcttgatatgattgggatgtttgtag #### Vps13a_ID4090_33 --> 0 - 2 Original Alignment GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACag gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACaggtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg Alignment from CESAR GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACag gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACaggtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg Alignment from Spaln_aa2Genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACAGgtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg Alignment from Spaln_nt2Genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACAGgtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg Alignment from Pairagon GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACAGgtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg Alignment from Exonerate_protein2genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACAGgtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg Alignment from Exonerate_coding2genome GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACAGgtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg Alignment from GeneWise GCATTTATAGATAATTTTCAAGCAGTTAAAGATGCCTTGGCTGAAGCAACTGTTCAAGCAGCAGAGATGGCTGCTGATGGTGTAAAGGAACTGGCTCGAAAGAGCTCTAGGTTTGCATTGGATGTTAACATCAAGGCTCCAGTTGTGCTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGATTAATTACAATGAAAAATATATTTGTTACTGTAACAGAGACCCAGAGTAATATCCCACCTGTAATTGATTTGATAACAATAAAGTTGAGTAAAATGAGACTATACAG gagagaaggttcattatggagtgatgtgtcctttctgggctcaatcacagGCATTCATAGACAATTTCCAAGCAGTTAAGGATGCCTTGGCTGAAGCAACTGTACAAGCAGCAGAAATGGCTGCTGATGGTGTAAAAGAACTGGCTCGGAAAAGCTCTCGATTTGCATTAGATGTTAATATTAAGTCTCCAGTTGTACTCATTCCACAGTCTCCAGTGTCTCAGAACGTTTTTGTTGCTGATTTTGGGTTAATTACCATGAAGAACACATTTGTTACTGTGACAGAGACCCAGAGTAACATACCACCTGTAATTGATTTGACAACGATAAAGTTGAGCAAAATGCGACTATACAGgtaagttaactttatgatatataaagtccatcttgttttcattgtgtatg #### Vps13a_ID4099_24 --> 0 - 1 Original Alignment ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagATT---GCATCTACTTTACCGGTGTCACATCATGTTTCTAAAGAACTAATACCTTCACTCAAACAGCCTGTTATGGAAGATggtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc Alignment from CESAR ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATg cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagATT---GCATCTACTTTACCGGTGTCACATCATGTTTCTAAAGAACTAATACCTTCACTCAAACAGCCTGTTATGGAAGATggtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc Alignment from Spaln_aa2Genome ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagATT---GCATCTACTTTACCGGTGTCACATCATGTTTCTAAAGAACTAATACCTTCACTCAAACAGCCTGTTATGGAAGATGgtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc Alignment from Spaln_nt2Genome ATTCAAGCATCTGCTTTGCCAGTATCACA-CATTTCTCAGAAGT--TAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagATT---GCATCTACTTTACCGGTGTCACATCATGTTTCTAAAGAACTAATACCTTCACTCAAACAGCCTGTTATGGAAGATGgtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc Alignment from Pairagon ATTCAAGCATCTGCTTTGCCAGTATCA---CACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagATT---GCATCTACTTTACCGGTGTCACATCATGTTTCTAAAGAACTAATACCTTCACTCAAACAGCCTGTTATGGAAGATGgtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc Alignment from Exonerate_protein2genome ATTCAAGCATCTGCTTTGCCAGTATCACACATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagATTGCATCTACTTTACCGGTGTCACATCATGTTTCTAAAGAACTAATACCTTCACTCAAACAGCCTGTTATGGAAGATGgtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc Alignment from Exonerate_coding2genome cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagattgcatctactttaccggtgtcacatcatgtttctaaagaactaataccttcactcaaacagcctgttatggaagatggtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc Alignment from GeneWise ATTCAAGCATCTGCTTTGCCAGTATCACAC---ATTTCTCAGAAGTTAATCCCTTTATTGGAACAGCCTGTTACTGAAGATG cagaattcgtaaagaagtcttctccatgctggtccccacttttcctccagATT---GCATCTACTTTACCGGTGTCACATCATGTTTCTAAAGAACTAATACCTTCACTCAAACAGCCTGTTATGGAAGATGgtaagcataaactcattaccaggacactttatgtaggtccaccctaaatc #### Vps13a_ID4100_23 --> 1 - 0 Original Alignment aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagaCACAAAATTTCTGGC------CCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt Alignment from CESAR aTTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagaCACAAAATTTCTGGC------CCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt Alignment from Spaln_aa2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagACACAAAATTTCTGGC------CCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt Alignment from Spaln_nt2Genome ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagACACAAAATTTCTGG------CCCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt Alignment from Pairagon ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagACACAAAATTTCTGG------CCCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt Alignment from Exonerate_protein2genome GATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagACACAAAATTTCTGGCCCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt Alignment from Exonerate_coding2genome GATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagACACAAAATTTCTGGCCCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt Alignment from GeneWise ATTCAAGATTTCTGGAAAGTTACCTCTTGTTTCATTACGAATTTCGGATAAAAAACTGCAAGGCATTATGGAGTTGTTGGGAAGCATTCCAAAGCCTGAACCTGTAACTGATGTATCTGCCCCTGCCAGATCATTCCAG aatgagaatgtgaaattaatctactttactctctatcctccctctcctagACACAAAATTTCTGGC------CCACTTGTCTCGTTGCAAATATCTGATATAAAATTACAAGGTAATATGGAGTTGTTTGGCAGCATTCCTAAGCCCGAACCCGTTACTGATGTATCTGCTCCTGCCAGATCATACCAAgtaggcccaccccttagaattaatgagacacaactttgaatagtgtgttt #### Vps13a_ID4101_22 --> 2 - 2 Original Alignment gtGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGAT------ATCAAGATGCCCaa atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacaggtGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTaagtaagtatacactgtatcctttataggttggccagttttgatcttttcat Alignment from CESAR gtGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAG------ATGCCCaa atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacaggtGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTaagtaagtatacactgtatcctttataggttggccagttttgatcttttcat Alignment from Spaln_aa2Genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGAT------ATCAAGATGCCCAA atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTAAgtaagtatacactgtatcctttataggttggccagttttgatcttttcat Alignment from Spaln_nt2Genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGG------ATATCAAGATGCCCAA atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTAAgtaagtatacactgtatcctttataggttggccagttttgatcttttcat Alignment from Pairagon GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGG------ATATCAAGATGCCCAA atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTAAgtaagtatacactgtatcctttataggttggccagttttgatcttttcat Alignment from Exonerate_protein2genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAAATTCAA atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTAAgtaagtatacactgtatcctttataggttggccagttttgatcttttcat Alignment from Exonerate_coding2genome GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAGATGCCCAAATTCAA atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTAAgtaagtatacactgtatcctttataggttggccagttttgatcttttcat Alignment from GeneWise GTGATAATTGGAAAGAGGCACGAAAGCTCAATGTATCTACACAGCATATTTTGATACCTATGCATGTCAATGTGGAGCTCTCTAAAGCCATGGTTTTCATGGATATCAAG------ATGCCCAA atctagaaaagcatatgaatgctcaataatgggtggaaaattcattacagGTGATAATTGGAAAGAGGCACGGAAG---AATGTATCTACACAGTATATTCTGAAACCTATGCATGTCAATGTTGAGCTCTCTAAGGCCATGGTTTTTATGGGCATCAAGATCAAGATGCCTAAgtaagtatacactgtatcctttataggttggccagttttgatcttttcat #### Vps13a_ID4106_17 --> 0 - 2 Original Alignment TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAaa cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAaagtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat Alignment from CESAR TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAaa cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAaagtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat Alignment from Spaln_aa2Genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat Alignment from Spaln_nt2Genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat Alignment from Pairagon TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat Alignment from Exonerate_protein2genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat Alignment from Exonerate_coding2genome TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat Alignment from GeneWise TTTGAAGCCTTGAAGTTTTTTGTTCACTTGAAAAGCATGTCTATTGTTCTAAGAGAAAATCACCAAAAGCCGGAGCTGTTAAACGTTGTAGTGGAAGGACTTAGTACTTCTGTTGTGCAAAGACCAGGAGCACAAGCCATAAA cccctattcttcttccaaaccacctctttgtgtgtaccttctcttttcagTTTGAGACCTTCAAGTTTTTTGTTCATTTGAAAAGCATGTCTATTGTTTTGAGAGAGAATCACCAAAAGCTGGAGCTGTTAAATGTTGTAGTGGAAGGACTGAGTACTTCTGTGGTGCAATGGCCAGGGGCACAAGCTAGAAAgtgcgcatgcatactagtccctttacacacgaaaggcaaaagactaaaat #### Vps13a_ID4109_14 --> 0 - 0 Original Alignment GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATGTTTTGAATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from CESAR GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATGTTTTGAATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Spaln_aa2Genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATGTTTTGAATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Spaln_nt2Genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATGTTTTGAATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Pairagon GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATGTTTTGAATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Exonerate_protein2genome GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATGTTTTGAATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Exonerate_coding2genome ttattatcaggagggttttatctatgaacctaacagatgccctcttacaggagttagaaaaaactttggatgttttgaatatacccataactagacagcaagcagaggttgaggtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc Alignment from GeneWise GAGTTGGAGAAAACTTTGGATGTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG ttattatcaggagggttttatctatgaacctaacagatgccctcttacagGAGTTAGAAAAAACTTTGGATGTTTTGAATATACCCATAACTAGACAGCAAGCAGAGGTTGAGgtaagtccacactatcattaaaataaatcatgagaagttatatttcttcc #### Vps13a_ID4111_12 --> 0 - 2 Original Alignment TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGtggtgagcatcagctgccccccagatctacttaaggtactttggcttatgct Alignment from CESAR TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGtggtgagcatcagctgccccccagatctacttaaggtactttggcttatgct Alignment from Spaln_aa2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGTGgtgagcatcagctgccccccagatctacttaaggtactttggcttatgct Alignment from Spaln_nt2Genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGTGgtgagcatcagctgccccccagatctacttaaggtactttggcttatgct Alignment from Pairagon TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGTGgtgagcatcagctgccccccagatctacttaaggtactttggcttatgct Alignment from Exonerate_protein2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGTGgtgagcatcagctgccccccagatctacttaaggtactttggcttatgct Alignment from Exonerate_coding2genome TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGTGgtgagcatcagctgccccccagatctacttaaggtactttggcttatgct Alignment from GeneWise TATTTCAGCCTCATGGAGCTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG caaatcctcttgtaaagaatgtaaaaaccctttgtgctttcccctggcagTACTTCAGCCTCATGGAGCTCCTTAAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCGTCTTCACCTCCATGCCAAGGAGTGgtgagcatcagctgccccccagatctacttaaggtactttggcttatgct #### Vps13a_ID4112_11 --> 2 - 0 Original Alignment ttTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagttTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata Alignment from CESAR ttTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagttTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata Alignment from Spaln_aa2Genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagTTTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata Alignment from Spaln_nt2Genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagTTTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata Alignment from Pairagon TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagTTTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata Alignment from Exonerate_protein2genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagTTTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata Alignment from Exonerate_coding2genome TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagTTTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata Alignment from GeneWise TTTTTCGACCTATATCTGCTAGTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCTGACCCCAAAATAAACCTGGCTGTTGATTTACATACCATAGCAATTGAGTTTAATAAACCACAG gagacgcggttgtaaatataacgacaacggtgtttggtgttttgctgtagTTTTTAGA---ATATCCGCCACTGCCAAACTTCAGATGAATCGACGATCAGATTTTGACTTTTCAGATTCCAAAATAAACTTGGCTGTTGATTTACATACCATAGCAATTCAATCTAATAAACCACAGgtaagaggggaggagccaagatggctaactaggaacagccccagtcaata #### Vti1a_ID11633_2 --> 2 - 0 Original Alignment atGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagatGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta Alignment from CESAR atGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagatGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta Alignment from Spaln_aa2Genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagATGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta Alignment from Spaln_nt2Genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagATGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta Alignment from Pairagon ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagATGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta Alignment from Exonerate_protein2genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagATGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta Alignment from Exonerate_coding2genome ATGAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagATGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta Alignment from GeneWise --GAGAAGAAGCAAATGGTTGCCAATGTGGAGAAACAGCTTGAAGAGGCCAGAGAACTG cccttaagggtgagtaattctcatttcctgtggtatttgatatttggcagATGAGAAGAAGCAAATGGTTGCCAATGTGGAAAAACAGCTTGAAGAGGCCAGAGAACTGgtacgtattaagaacaccaaggtgagctattccattagactaactttgta #### Vti1a_ID11708_6 --> 2 - 0 Original Alignment agCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagagCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga Alignment from CESAR agCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagagCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga Alignment from Spaln_aa2Genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga Alignment from Spaln_nt2Genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga Alignment from Pairagon AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga Alignment from Exonerate_protein2genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga Alignment from Exonerate_coding2genome AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga Alignment from GeneWise AGCAAATCGGCCAAGAGATGTTGGAAAACCTGAGTCATGACAGAGAAAAGATACAGCGGGCACGTGACCGA tgaatatgccccaacaggattcacttaagctgtgctttctttctgtctagAGCAAATTGGTCAAGAGATGTTAGAAAACTTAAGCCATGATCGAGAAATGATACAGCGGGCACGAGACAGGgtaagtatacattgtcctccttccatttccattatgtgttcacaagtaga #### Vwa2_ID12231_4 --> 0 - 2 Original Alignment GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCaa gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCaagtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat Alignment from CESAR GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCaa gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCaagtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat Alignment from Spaln_aa2Genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCAAgtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat Alignment from Spaln_nt2Genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCAAgtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat Alignment from Pairagon GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCAAgtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat Alignment from Exonerate_protein2genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCAAgtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat Alignment from Exonerate_coding2genome GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTCAA gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCAAgtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat Alignment from GeneWise GTCAGAGTCGGAGCCTTGCAGTTTGGTTCCACTCCTCATCTGGAATTCCCCTTGGACTCCTTCTCAACTCGACAGGAAGTGAAGGAAAGCATCAAGGGGATAGTTTTC-- gagatttaatgcattcccacaataaacatatatccatctgtccaccacagGTCAGGGTTGGAACCTTGCAGTTTGGTTCTACTCCTCATTTGGAATTTCCCTTGGACTCCTTTTCGACTCGACAGGAGGTGAAGGAAAGCATCAAGGGGATAGTCTTCAAgtaagtgtacttggggcatcctcacttaaacctcattatcttccttccat #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagccCTCTGTTCCTTTGGCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGggtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagccCTCTGTTCCTTTGGCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGggtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Spaln_aa2Genome CTGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcatttgtctgtgcaactaagatgtatttttctgtctggctattta gCCCTCTGTTCCTTTGGCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Spaln_nt2Genome TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttag---CCCTCTGTTCCTTTGGCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Pairagon TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttag---CCCTCTGTTCCTTTGGCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagCCCTCTGTTCCTTTGGCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGCCCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagCC---CTCTGTTCCTTTGGCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg #### Vwce_ID2955_10 --> 2 - 0 Original Alignment gcTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tgatgccaggttggaataaattctcaatcgcctgggatttgtctctgaaggcTGCTTTCACAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGTGTGTGTGTCTGTTTGgtcagtatctatggcagcccataacatagggccctagaactggattatcc Alignment from CESAR gcTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tgatgccaggttggaataaattctcaatcgcctgggatttgtctctgaaggcTGCTTTCACAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGTGTGTGTGTCTGTTTGgtcagtatctatggcagcccataacatagggccctagaactggattatcc Alignment from Spaln_aa2Genome GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tgatgccaggttggaataaattctcaatcgcctgggatttgtctctgaagGCTGCTTTCACAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGTGTGTGTGTCTGTTTGgtcagtatctatggcagcccataacatagggccctagaactggattatcc Alignment from Spaln_nt2Genome GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tgatgccaggttggaataaattctcaatcgcctgggatttgtctctgaagGCTGCTTTCACAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGTGTGTGTGTCTGTTTGgtcagtatctatggcagcccataacatagggccctagaactggattatcc Alignment from Pairagon GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tgatgccaggttggaataaattctcaatcgcctgggatttgtctctgaagGCTGCTTTCACAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGTGTGTGTGTCTGTTTGgtcagtatctatggcagcccataacatagggccctagaactggattatcc Alignment from Exonerate_protein2genome GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tgatgccaggttggaataaattctcaatcgcctgggatttgtctctgaagGCTGCTTTCACAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGTGTGTGTGTCTGTTTGgtcagtatctatggcagcccataacatagggccctagaactggattatcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTTTCACAGTGGCGCTATCCGAGCCGAAGGGGATGTGTTTTCACCTCCTGAGGAGAACTGTACTGTGTGTGTCTGTCTG tgatgccaggttggaataaattctcaatcgcctgggatttgtctctgaagGCTGCTTTCACAGTGGTGCCATCCGAGCTGAAGGGGATGTATTTTCACCCCCTGAAGAGAACTTTAGTGTGTGTGTCTGTTTGgtcagtatctatggcagcccataacatagggccctagaactggattatcc #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagggGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagggGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from Exonerate_coding2genome GGGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacaGGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga Alignment from GeneWise GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGCGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA aagttgctgtatttagtcacctcagtatccctgttcctgggacccaacagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTTGCTCCATTGGGACAACCACGGAGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCAGTGAGACCCAAgtaaggaggctatggcttggtcaaagtcacaagagctgtagaattcctga #### Wdr74_ID2317_7 --> 0 - 2 Original Alignment GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCaa ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTaagtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt Alignment from CESAR GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCaa ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTaagtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt Alignment from Spaln_aa2Genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTAAgtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt Alignment from Spaln_nt2Genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTAAgtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt Alignment from Pairagon GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTAAgtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt Alignment from Exonerate_protein2genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTAAgtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt Alignment from Exonerate_coding2genome GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTAAgtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt Alignment from GeneWise GTCCGTGTCTATGATCCAGTCTCCCCCCAGCGCCGGCCAGTCCTAGAGGCCACCTATGGAGAGTACCCACTGACAGCTATGACCCTTACTCCTGAGGGCAA ggactcatgatggcacagtttactttggggcccttttttcttcgtcccagGTCCGTGTTTATGACCCAATCTCTTCACAGCGATGTCCGGTTCTCAAGGCCAATTACGGAGAGTCCCCCCTAACAGCTATGTCCTTGACTCCTAAGGCTAAgtaaacgtatggaccgagtcttcatcaactgtaatcaagtacactctatt #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcaggcAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcaggcAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcagGCAGACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct Alignment from GeneWise TCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG agagtgtaatattggctaatccgccaaaacccctttctgtttctctgcaggcagACTAGTTGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAATATTGAGGATGCACAGGATACGCAACCCTTGCGGTCTAGAGCATAAGgtaggattagctaacagggtgcaatgggtcacacactcatgtcactatct #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggaggctatacacacttggtatctgtcttatactcacagGTTTATCTTAAGTGTCAACTTAACTGTCTTCTCCTGTCAGGCCGGGATAACTGGGAGgtcagcaaagaataagtaaataaggtaaggcctttagtgacaggcattta #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac Alignment from CESAR ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAAC---TGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac Alignment from Pairagon ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAA---AACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAAC---TGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gcattatctctttgaacatcgttaatgtctcctgccctgactttccacagAATCATAAGAAGAATATCGAAAACAACTGCAAAAAGCTCCTCAGGAAGTTGGGCAAGTACAGCAATCAGAAGGCTGTTGCTAACTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtgaggccatctttccgctacagtgtcttcattctaacagtcccagtgac #### Wdr96_ID10341_30 --> 0 - 0 Original Alignment ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTG---GCAGAGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag Alignment from CESAR ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCA---GAGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag Alignment from Spaln_aa2Genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTA---GTGGCAGAGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag Alignment from Spaln_nt2Genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAG---AGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag Alignment from Pairagon ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCAG---AGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag Alignment from Exonerate_protein2genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTA---GTGGCAGAGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag Alignment from Exonerate_coding2genome ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTA---GTGGCAGAGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag Alignment from GeneWise ACCAAGACTGCAGAAGCCATCCAGAAGGCGAGAGAAGATCTGGACGTATTCAAGGAGCACCATGACATGTTAGTGGCA---GAGGACAAA actatgctggcttcatgagcgcttcggttctgattctgtgtttttaccagACCAAAACTGCAGAGGACATTCAGAAGACAAGAGAAGGTCTAGATGTATTCAATGAGCATCATGACATGTTGGTGGTAGTGAAGGATAAAgtgctgcatcaccatcagaaaagacacaagctgcagatgatactcattag #### Wdr96_ID10343_28 --> 0 - 0 Original Alignment TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg Alignment from CESAR TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg Alignment from Spaln_aa2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg Alignment from Spaln_nt2Genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg Alignment from Pairagon TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg Alignment from Exonerate_protein2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg Alignment from Exonerate_coding2genome TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg Alignment from GeneWise TCTTTAGAAGCGGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGACGACCATCTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAAATGGTCATCAACCAG gaaggaacatgttaatcacccattcattttcctctgaccctgttctacagTCCTTGGAAACAGAGCTGAAGAAACTTCAAAATTCTATTCAAGAGAGCACGCAGAACTTTGATGATCATCTGCAAAGACTTTTCGAGAGGAGAGTGAAGGCTGAAATGGTCGTTAACCAGgtaagagacttgcattgctctgactggaccttacatgcatcctcttttgg #### Wdr96_ID10347_24 --> 0 - 0 Original Alignment GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta Alignment from CESAR GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta Alignment from Spaln_aa2Genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta Alignment from Spaln_nt2Genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta Alignment from Pairagon GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta Alignment from Exonerate_protein2genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta Alignment from Exonerate_coding2genome GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta Alignment from GeneWise GATATCATTTACAATATAAAAAGGAATTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGTGTAAAAGAAAAGAATGTTAGAATTGCAGAAATTATTTCAGACTTGGAATTGGAAGAAACAGTGTGGCAGCCAGTGTTTGAAGACAGTGAGAAACCAGAAAGAGCCCTTGTCGTGGAAGATGATGAG atcagcgaaatagaatgtgctttcattagtctctctgtgtcttcatgtagGATATTATTTATAACATACGAAGGAACTTCAATAGTGAATTTGATGCTGCCTATAAGCCGAAAGAGATTAAAATTGCGCGTGTAAAAGAAAAGAATGTCAGGATTGCAGAGATTATCTCAGACTTGGAATCAGAAGAAACAGTGTGGCAGCCAGTCTTTGAAGACAGTGAGAAGCCGGAAAGAGCCATTGTGGTTGAAGATGATGAAgtgggtgctaacaaccctctctattttcatctcaacatcccctctacgta #### Wdr96_ID10352_19 --> 0 - 0 Original Alignment GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt Alignment from CESAR GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt Alignment from Spaln_aa2Genome GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt Alignment from Spaln_nt2Genome GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt Alignment from Pairagon GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt Alignment from Exonerate_protein2genome GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt Alignment from Exonerate_coding2genome GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt Alignment from GeneWise GCCATCAAAAAGGAGGTGAGGATTTTTTCCCCTAGAAGAAAGGAGATCAAAAGAGGAATTAAGGAGCTCGCTCAGGTT agtgccccctatcacccacctcgtcaacctttctttttcttttctaaaagGCTGTCAAAAAGGAGCTGAGAATTTTTTCTCCTAGGAGAAAGGAGATCAAGAGGGGGATTAAAGAGCTCGCCCAGGTTgtatgttcggcagtgctcaaataggggtacttattggaacagtcaggggt #### Wdr96_ID10361_10 --> 0 - 0 Original Alignment ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg Alignment from CESAR ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg Alignment from Spaln_aa2Genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg Alignment from Spaln_nt2Genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg Alignment from Pairagon ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg Alignment from Exonerate_protein2genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg Alignment from Exonerate_coding2genome ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg Alignment from GeneWise ACACTCACTAGTTCTGGGGAAGTTTCCACTGTATCACTAGAAGACTGCAATTGTACAAGCAGGATTTTCCTGAAGACTCAA agtttaacaagtgctcacttgtgtatctttactcttccctttcgccacagACACTTACTAGTCCTGGGGAAGTTTCGACTGTATCACTAGAAGACTGCAATTGTACAAGTAGGATTTTCATTAGAACTCAAgtgagagtgttctgaggagccacaaatcgttgacctacctagtatgcctg #### Wdr96_ID10364_7 --> 2 - 0 Original Alignment atGGAGCCCCGCTCATCAACCCA---CTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagacAGAGCCCCACTCATCAACCCACTCATCACACTAGTATTCCAGAAGGACAGGATCATTGCATCTGGAGTTgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa Alignment from CESAR atGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagacAGAGCCCCACTCATCAACCCACTCATCACACTAGTATTCCAGAAGGACAGGATCATTGCATCTGGAGTTgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa Alignment from Spaln_aa2Genome ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagACAGAGCCCCACTCATCAACCCACTCATCACACTAGTATTCCAGAAGGACAGGATCATTGCATCTGGAGTTgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa Alignment from Spaln_nt2Genome ATGGAGCCCCGCTCATCAACCCACTCA---CGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagACAGAGCCCCACTCATCAACCCACTCATCACACTAGTATTCCAGAAGGACAGGATCATTGCATCTGGAGTTgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa Alignment from Pairagon ATGGAGCCCCGCTCATCAACCCAC---TCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagACAGAGCCCCACTCATCAACCCACTCATCACACTAGTATTCCAGAAGGACAGGATCATTGCATCTGGAGTTgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa Alignment from Exonerate_protein2genome ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagACAGAGCCCCACTCATCAACCCACTCATCACACTAGTATTCCAGAAGGACAGGATCATTGCATCTGGAGTTgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa Alignment from Exonerate_coding2genome tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagacagagccccactcatcaacccactcatcacactagtattccagaaggacaggatcattgcatctggagttgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa Alignment from GeneWise ATGGAGCCCCGCTCATCAACCCACTC---ACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATT tgcagcatgagtattcatgtgctacttctatgtattatctttttctatagACAGAGCCCCACTCATCAACCCACTCATCACACTAGTATTCCAGAAGGACAGGATCATTGCATCTGGAGTTgtaagcaattcgcctactcagaacccctcaacttcattgcaaataataaa #### Xpnpep1_ID11142_14 --> 1 - 0 Original Alignment gGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccaggGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca Alignment from CESAR gGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccaggGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca Alignment from Spaln_aa2Genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccagGGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca Alignment from Spaln_nt2Genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccagGGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca Alignment from Pairagon GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccagGGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca Alignment from Exonerate_protein2genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccagGGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca Alignment from Exonerate_coding2genome GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccagGGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca Alignment from GeneWise GGATGGAACCACGGACGTCACCCGGACCATGCACTTTGGGACCCCCACTGCCTATGAGAAG gtgttcttccaagtggacaaagaatattgacagctcttctctgcccccagGGATGGAACCACAGGTGTAACCCAGACCACACGTTCTGGGACACCCACTGCATACGAAAAGgtacgtagaagtgaaattactgcctgctttccatccccccaggggtggca #### Zdhhc16_ID8347_4 --> 1 - 1 Original Alignment gTGTGTGCTGAAGATGGATCATCACTGCc gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccaggTGTGTGTTGAAGATGGATCATCACTGTcgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc Alignment from CESAR gTGTGTGCTGAAGATGGATCATCACTGCc gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccaggTGTGTGTTGAAGATGGATCATCACTGTcgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc Alignment from Spaln_aa2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccagGTGTGTGTTGAAGATGGATCATCACTGTCgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc Alignment from Spaln_nt2Genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccagGTGTGTGTTGAAGATGGATCATCACTGTCgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc Alignment from Pairagon GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccagGTGTGTGTTGAAGATGGATCATCACTGTCgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc Alignment from Exonerate_protein2genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccagGTGTGTGTTGAAGATGGATCATCACTGTCgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc Alignment from Exonerate_coding2genome GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccagGTGTGTGTTGAAGATGGATCATCACTGTCgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc Alignment from GeneWise GTGTGTGCTGAAGATGGATCATCACTGCC gattaccatccaatcccaagaagctcaaaactgctgtttctctgttccagGTGTGTGTTGAAGATGGATCATCACTGTCgtgaggactgtagtgtttcaatatcctcattcactagtgtcttgtgactc #### Zdhhc16_ID8348_5 --> 2 - 0 Original Alignment ccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaaggcaatctcttccgacagccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag Alignment from CESAR ccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaaggcaatctcttccgacagccTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag Alignment from Spaln_aa2Genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaaggcaatctcttccgacagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag Alignment from Spaln_nt2Genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaaggcaatctcttccgacagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag Alignment from Pairagon CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaaggcaatctcttccgacagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag Alignment from Exonerate_protein2genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaaggcaatctcttccgacagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag Alignment from Exonerate_coding2genome CCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaaggcaatctcttccgacagCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag Alignment from GeneWise -ATGGATCATCACTGCCCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGCTACTTCTTCTCTTTCTGCTTTTTCATGACTCTGGGCTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG cagataatactgtactacaactgatcttctaagGCAATCTCTTCCGACAGCCTGGCTAAACAACTGTGTGGGCCACTATAACCATCGGTACTTCTTTTCCTTCTGCTTCTTCATGACTCTGGGTTGTGTCTACTGTAGCTATGGAAGTTGGGACCTTTTCCGGGAGTCTTATGCTGCCATAGAGgtaagcttctaactagtgaatggaagcagctaagaaggaaacagcttgag #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGGTG----------------------------------------------- tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGGTGCTTGTTGGAGGCACCGCTTTATTATGTGGAAAAATGGTCATGGGTAT Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat #### Zdhhc6_ID11625_4 --> 0 - 0 Original Alignment CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat Alignment from CESAR CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat Alignment from Spaln_aa2Genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat Alignment from Spaln_nt2Genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat Alignment from Pairagon CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat Alignment from Exonerate_protein2genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat Alignment from Exonerate_coding2genome CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat Alignment from GeneWise CTCTCCTTTGGGTGGAACACAGTCAAGATTGACATGAGTGCAGCCAGGAGAGATCCACCTCCAATTGTTCCCTTCGGATTGGCTGCGTTTGCCGCCACCTTGTTTGCCTTGGGATTGGCTTTGGGAACAACCATAGCTGTTGGGATGTTGTTTTTCATACAG ttgggctctgagaacaagtatacagcacctgtccttcctttcttctctagCTATCCTTTGGGTGGAACACTGTTAAAATTGACATGAGTGCAGCCAGGAGAGACCCACCGCCAATTGTGCCTTTTGGGTTGGCTTCCTTTGCCACCACCTTGTTTGCCTTGGGACTGGCTTTAGGAACAACGATAGCTGTCGGGATGCTATTCTTCATACAGgtgaggggctaagtttcacctttgtcctggagttgccatcatacaagtat #### Zdhhc6_ID11627_2 --> 0 - 2 Original Alignment GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACag taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACaagtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac Alignment from CESAR GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACag taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACaagtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac Alignment from Spaln_aa2Genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac Alignment from Spaln_nt2Genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac Alignment from Pairagon GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac Alignment from Exonerate_protein2genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac Alignment from Exonerate_coding2genome GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac Alignment from GeneWise GAAAAGTCTCAGGATAGCATGTATCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCGCCACGTTCACACCATTGCAGAAAGTGTAACAG taagtatatcatttaggaataagtaacagtatgtattttttttgtaatagGAAAAGTCTCAGGATAGCACATATCTCCAGTATTGCAAAGTCTGTCAAGCATACAAGGCTCCACGTTCACACCACTGCCGAAAATGCAACAAgtaaggtgagttcttcgtatgtcaaaccttctatctttactgactctgac #### Zfp91_ID3461_5 --> 1 - 2 Original Alignment tAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAag gtcttgttcggaggccagatgtccaacacccactcctgtgtgccctacagtAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACaggtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa Alignment from CESAR tAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAag gtcttgttcggaggccagatgtccaacacccactcctgtgtgccctacagtAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACaggtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa Alignment from Spaln_aa2Genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gtcttgttcggaggccagatgtccaacacccactcctgtgtgccctacagTAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACAGgtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa Alignment from Spaln_nt2Genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gtcttgttcggaggccagatgtccaacacccactcctgtgtgccctacagTAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACAGgtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa Alignment from Pairagon TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gtcttgttcggaggccagatgtccaacacccactcctgtgtgccctacagTAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACAGgtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa Alignment from Exonerate_protein2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAGTAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gtcttgttcggagGCCAGATGTCCAACACCCACTCCTGTGTGCCCTACAGTAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACAGgtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa Alignment from Exonerate_coding2genome TAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gtcttgttcggaggccagatgtccaacacccactcctgtgtgccctacagTAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACAGgtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa Alignment from GeneWise ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAGTAGTGATGAGGAAGAGGAGGAGGAAGAAGAAATGTTAATCAGTGAAGAGGAAATACCATTCAAAGATGACCCAAGAGATGAGACTTACAAGCCCCACCTTGAAAG gtcttgttcggagGCCAGATGTCCAACACCCACTCCTGTGTGCCCTACAGTAGTGATGAGGAAGAGGAAGAGGAGGAAGAGATGTTGATCAGTGAAGAAGAAGTATCCTTCAAGGATGACTCAAGAGATGAGTCTTATAAGCCCTACCTTGACAGgtaggcttgggattttaccatatacacatggcaagagaaatctgtattaa #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagatGTTCCTGAAGAGCAACGAACACCTGGTGGGATTaggtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc Alignment from CESAR atGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTag atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagatGTTCCTGAAGAGCAACGAACACCTGGTGGGATTaggtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagATGTTCCTGAAGAGCAACGAACACCTGGTGGGATTAGgtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagATGTTCCTGAAGAGCAACGAACACCTGGTGGGATTAGgtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc Alignment from Pairagon ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagATGTTCCTGAAGAGCAACGAACACCTGGTGGGATTAGgtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc Alignment from Exonerate_protein2genome atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagatgttcctgaagagcaacgaacacctggtgggattaggtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc Alignment from Exonerate_coding2genome ATGTTCCAGAAGAACATCAGTCTCCCGGTGGCATTAG atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagATGTTCCTGAAGAGCAACGAACACCTGGTGGGATTAGgtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc Alignment from GeneWise atagaggttgagtttttggctgtgtatgccccacgctgctttccctacagatgttcctgaagagcaacgaacacctggtgggattaggtgagtggttgctccctatacacccaatgcttcatattgcagaatgtttc #### Zfyve27_ID8420_2 --> 1 - 1 Original Alignment gTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGg ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagaTGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGggtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc Alignment from CESAR gTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGg ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagaTGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGggtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc Alignment from Spaln_aa2Genome GTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGG ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagATGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGGgtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc Alignment from Spaln_nt2Genome GTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGG ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagATGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGGgtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc Alignment from Pairagon GTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGG ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagATGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGGgtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc Alignment from Exonerate_protein2genome GTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGG ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagATGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGGgtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc Alignment from Exonerate_coding2genome GTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGG ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagATGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGGgtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc Alignment from GeneWise GTGGCAGATGCCTTTGTGTTCCTTGCTGACTTGCCTGGGCCTCAACATCTTGTTCCTCACTTTGAACGAGG ggcagataaaataaaagggagcaggctatgcactctgttgtgtctcgcagATGGCACATGCCATTGTGTTCCTTGCTGACCTGCCTGGGCCTCAATATCTTGTTCCTCACGCTCAATCAGGgtaatggttaggaggtgtacctcaagtcatagaagttccatctcaacacc #### Zfyve27_ID8426_8 --> 0 - 0 Original Alignment GAGACCCACCTGGTGGTGCTG acaacttccatctttgaatttcaacaccttcccccttccctctttattagGAAACACACCTGGTGGTGCTTgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc Alignment from CESAR GAGACCCACCTGGTGGTGCTG acaacttccatctttgaatttcaacaccttcccccttccctctttattagGAAACACACCTGGTGGTGCTTgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc Alignment from Spaln_aa2Genome GAGACCCACCTGGTGGTGCTG acaacttccatctttgaatttcaacaccttcccccttccctctttattagGAAACACACCTGGTGGTGCTTgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc Alignment from Spaln_nt2Genome GAGACCCACCTGGTGGTGCTG acaacttccatctttgaatttcaacaccttcccccttccctctttattagGAAACACACCTGGTGGTGCTTgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc Alignment from Pairagon GAGACCCACCTGGTGGTGCTG acaacttccatctttgaatttcaacaccttcccccttccctctttattagGAAACACACCTGGTGGTGCTTgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc Alignment from Exonerate_protein2genome GAGACCCACCTGGTGGTGCTG acaacttccatctttgaatttcaacaccttcccccttccctctttattagGAAACACACCTGGTGGTGCTTgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc Alignment from Exonerate_coding2genome acaacttccatctttgaatttcaacaccttcccccttccctctttattaggaaacacacctggtggtgcttgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc Alignment from GeneWise acaacttccatctttgaatttcaacaccttcccccttccctctttattaggaaacacacctggtggtgcttgtaaggtgaagtagcctgaagggtggggtcaggccaatcagactacattc #### Zfyve27_ID8428_10 --> 2 - 0 Original Alignment ggAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacaggaAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt Alignment from CESAR ggAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacaggaAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt Alignment from Spaln_aa2Genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacagGAAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt Alignment from Spaln_nt2Genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacagGAAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt Alignment from Pairagon GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacagGAAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt Alignment from Exonerate_protein2genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacagGAAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt Alignment from Exonerate_coding2genome GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacagGAAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt Alignment from GeneWise GGAATTGTGCAGGCTGTGCCGCTACGTTCTCCGTGCTGAAGAAGAGG tagataagcctggcctgggttgtggcattgacttgcatctccctatacagGAAATTGTGCAGGCTGTGCTGCAACATTTTCTGTGCTGGAGAAAAGAgtaggaatgtgtttatttgtcaggcctgttactatcgcctaatgaagatt #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAggtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAggtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGCTTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtatcctatacagtccaaaggtcacactaattgctcctgttatcttacagCGAAGCTGCAGCAACTGTGCAAACAGCTTCTGCTCACATTGCTGCTCATTCAAGGTACCCCGCTCCTCCATGGGCGCCACAGgtaagagaggaggattgtagataggctgagagaaagaaagctcctgagac #### Zp1_ID3066_6 --> 0 - 2 Original Alignment GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCcggtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg Alignment from CESAR GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCcggtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg Alignment from Spaln_aa2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg Alignment from Spaln_nt2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg Alignment from Pairagon GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg Alignment from Exonerate_protein2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg Alignment from Exonerate_coding2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg Alignment from GeneWise GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG ataacatactcccatcacttcctgaaatacattaccccttttcttcccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTTCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtaagtactaaataggcaagcctgtagactagttgacaagatggagtgtg #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAggtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAggtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt ####